Citrus Sinensis ID: 014644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEcccEEEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccccEEEEEEccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEccccccccEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHEEEcccccccEEEEEccccEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEcccEEEEEEEEEcccccEEEEccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHccEEEcccccEEEEEcEEEEEEEEEccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHEHHHcccccccEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
mdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhleWTENMATKIANVgnsvharcqkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrDYMNLKLWDirmdstpvatfkihehlrpklcdlynndsifdkfecsvsgdglhfatgsySNLLRIFShgvgsaggitveagknenrkpilqaaprarrssLSNLTRGLYRQahensssghhelsYNLSSKLLhlawhpttnliacangnslffhya
Flexible Loop (DISEMBL)
mdftstshpeyryktefqshepeFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGItveagknenrkpilqaaprarrsslsNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Low Complexity Region (SEG)
MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered region (IsUnstruct)
***********************FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV*********************************************SYNLSSKLLHLAWHPTTNLIACANGNSLFFHY*
Disordered Region (DISOPRED)
********PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE*************************************ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISEMBL)
*********EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR***********ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Disordered Region (DISPRO)
*****TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD*******************************LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK****************************************LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.969	0.814	0.596	1e-143
Q0E2P1	525	Serine/threonine protein	yes	no	0.973	0.780	0.571	1e-139
A2X2K3	525	Serine/threonine protein	N/A	no	0.973	0.780	0.571	1e-139
Q5Z8Z7	581	Serine/threonine protein	no	no	0.973	0.705	0.569	1e-136
Q38821	513	Serine/threonine protein	no	no	0.966	0.793	0.569	1e-136
Q12702	463	Protein phosphatase PP2A	yes	no	0.902	0.820	0.482	1e-103
Q6DIY3	447	Serine/threonine-protein	yes	no	0.869	0.818	0.458	2e-97
Q29090	426	Serine/threonine-protein	yes	no	0.895	0.884	0.466	5e-96
P63150	447	Serine/threonine-protein	yes	no	0.895	0.843	0.466	8e-96
Q6P1F6	447	Serine/threonine-protein	yes	no	0.895	0.843	0.466	8e-96

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/421 (59%), Positives = 318/421 (75%), Gaps = 13/421 (3%)

Query: 8   HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 67
           HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+LSTNDKTIK WKV+++
Sbjct: 87  HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEK 146

Query: 68  KVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 120
           K+KKI EM+  P  SS        N L A+K         SF  G        +   + +
Sbjct: 147 KIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSL--RLPVVVTS 204

Query: 121 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP 180
              ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NLWNLEIS+Q FNIVD+KP
Sbjct: 205 QETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKP 264

Query: 181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 240
           +NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD   ++  +  E+ GS+
Sbjct: 265 TNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEP-EAPGSR 323

Query: 241 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 300
           SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA++++HEHLRP+LCDLY 
Sbjct: 324 SFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYE 383

Query: 301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360
           NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA KN  R+ I   A  
Sbjct: 384 NDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARP 443

Query: 361 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420
           +R  S+ ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT N IACA  NSL+ +Y
Sbjct: 444 SR--SIGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYY 500

Query: 421 A 421
           A
Sbjct: 501 A 501

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/443 (57%), Positives = 319/443 (72%), Gaps = 33/443 (7%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
            D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+LSTNDKTIK
Sbjct: 94  QDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTNDKTIK 153

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKNFMNEHNPP 100
            WKV+++KVK+I  M+     +S+                    N   +EK +   +N  
Sbjct: 154 YWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNFPNNDL 210

Query: 101 SFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFVSADD 158
            F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD ET++SADD
Sbjct: 211 LFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADD 266

Query: 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 218
           LRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +RL+D+R
Sbjct: 267 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLR 326

Query: 219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 278
           QSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKLWDI MD
Sbjct: 327 QSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMD 385

Query: 279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 338
           S PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GSA
Sbjct: 386 SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSA 445

Query: 339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLH 398
              T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+LS+KLLH
Sbjct: 446 EATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDLSTKLLH 502

Query: 399 LAWHPTTNLIACANGNSLFFHYA 421
           LAWHPT N IACA  NSL+ +YA
Sbjct: 503 LAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/443 (57%), Positives = 319/443 (72%), Gaps = 33/443 (7%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
            D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+LSTNDKTIK
Sbjct: 94  QDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTNDKTIK 153

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKNFMNEHNPP 100
            WKV+++KVK+I  M+     +S+                    N   +EK +   +N  
Sbjct: 154 YWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNFPNNDL 210

Query: 101 SFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDCETFVSADD 158
            F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD ET++SADD
Sbjct: 211 LFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADD 266

Query: 159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 218
           LRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +RL+D+R
Sbjct: 267 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLR 326

Query: 219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 278
           QSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM LKLWDI MD
Sbjct: 327 QSALCDNHAKLFEEH-EAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMD 385

Query: 279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 338
           S PVATF++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GSA
Sbjct: 386 SGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSA 445

Query: 339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLH 398
              T+EA +N  R+ +      AR  +L++LTR + R+  EN     +  SY+LS+KLLH
Sbjct: 446 EATTLEASRNPMRRQVANPTRPAR--TLTSLTRAV-RRGGENPGVDANGNSYDLSTKLLH 502

Query: 399 LAWHPTTNLIACANGNSLFFHYA 421
           LAWHPT N IACA  NSL+ +YA
Sbjct: 503 LAWHPTENSIACAAANSLYMYYA 525

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/439 (56%), Positives = 317/439 (72%), Gaps = 29/439 (6%)

Query: 2   DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKL 61
           D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   N S+ +LSTNDKTIK 
Sbjct: 94  DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKTIKY 153

Query: 62  WKVRDQKVKKIKEMD-----------HFPFVSSENTLLA------EKNFMNEHN--PPSF 102
           WKV+++KVK++  M+                SS   LL       + +F+N     PP  
Sbjct: 154 WKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCSDKSSFLNSDILFPPG- 212

Query: 103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 162
             GY    +  +   +A+   ++ ARC++VY HAHD++INSIS NSD ET++SADDLRIN
Sbjct: 213 --GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRIN 267

Query: 163 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 222
           LWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYSSS+G +RL+D+RQSAL
Sbjct: 268 LWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSAL 327

Query: 223 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 282
           CD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LKLWD+ MDS PV
Sbjct: 328 CDNHSKIFEEH-EAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPV 386

Query: 283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 342
           +TF++HEHLRPKLCDLY NDSIFDKFEC +SGDGLH ATGSY NL R+F    GS    T
Sbjct: 387 STFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEATT 446

Query: 343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 402
           +EA +N  R+ I+   P     +L++L RG+ R+  EN     +  S++ S+KLLHLAWH
Sbjct: 447 LEASRNPMRRQIVN--PTRPTRTLTSLARGV-RRGGENQGVDANGNSFDFSTKLLHLAWH 503

Query: 403 PTTNLIACANGNSLFFHYA 421
           PT N IACA  NSL+ +YA
Sbjct: 504 PTENSIACAAANSLYMYYA 522

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/432 (56%), Positives = 314/432 (72%), Gaps = 25/432 (5%)

Query: 8   HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 67
           HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   NG++F+LSTNDKTIK WKV+D+
Sbjct: 89  HPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDK 148

Query: 68  KVKKIKEMDHFPFVSSENTLLAE------------KNFMNEHNPPSFAHGYHLEWTENMA 115
           K+KKI +M+  P  +  N  +A                ++E N  S  + + L      +
Sbjct: 149 KIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGVSEVNN-SLCNDFSLPAGGISS 207

Query: 116 TKIANV----GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 171
            ++  V     +S  ARC++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q
Sbjct: 208 LRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 267

Query: 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231
            FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G +RL+D+RQSALCD  +++  
Sbjct: 268 SFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHSKLFE 327

Query: 232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 291
           +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM LKLWDI MD+ PVATF++HE+L
Sbjct: 328 EP-EQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGPVATFQVHEYL 386

Query: 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351
           +PKLCDLY NDSIFDKFEC +SG+GL  ATGSYSNL R+F    GS    T+EA +N  R
Sbjct: 387 KPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGVAPGSTETATLEASRNPMR 446

Query: 352 K--PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA 409
           +  PI     RA    LS++TR + R +      G+   + + ++KLLHLAWHP  N IA
Sbjct: 447 RHVPIPSRPSRA----LSSITRVVSRGSESPGVDGNTN-ALDYTTKLLHLAWHPNENSIA 501

Query: 410 CANGNSLFFHYA 421
           CA  NSL+ +YA
Sbjct: 502 CAAANSLYMYYA 513

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/421 (48%), Positives = 275/421 (65%), Gaps = 41/421 (9%)

Query: 10  EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 69
           EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+LSTNDKTIKLWK+ ++ +
Sbjct: 66  EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTNDKTIKLWKLYEKNL 125

Query: 70  KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC 129
           K                ++AE N  +  + P    G     ++    ++ +    + A  
Sbjct: 126 K----------------VVAENNLSDSFHSP--MQGPLTTPSQLRLPRLNHHDMIIAAYP 167

Query: 130 QKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 189
           ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  FNIVD+KP NM++LTEV
Sbjct: 168 RRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHSFNIVDIKPENMEELTEV 227

Query: 190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 249
           ITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D  E   SKSFF+EII+S
Sbjct: 228 ITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED-QEDQDSKSFFSEIISS 286

Query: 250 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 309
           ISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ LR KLCDLY ND IFDKFE
Sbjct: 287 ISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFE 346

Query: 310 CSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 366
           C+ SGD  H  +GSYSN   I+   S   G  G I ++A K         AA RAR+S+ 
Sbjct: 347 CTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK---------AAFRARKSAA 397

Query: 367 SNLT----------RGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL 416
           +N+           R   + A  ++S G    + + + K+LH +WHP  + +A A  N+L
Sbjct: 398 NNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDNLDYNKKILHASWHPFEDSVAIAATNNL 457

Query: 417 F 417
           F
Sbjct: 458 F 458

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 193/421 (45%), Positives = 266/421 (63%), Gaps = 55/421 (13%)

Query: 7   SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-- 64
           S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLWK+  
Sbjct: 67  SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISE 126

Query: 65  RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 117
           RD++V+         +  D F   S    +L   + M E +P                  
Sbjct: 127 RDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP------------------ 168

Query: 118 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD 177
                       ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIVD
Sbjct: 169 ------------RRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVD 216

Query: 178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 237
           +KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E  
Sbjct: 217 IKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEE-PEDP 275

Query: 238 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297
            S+SFF+EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC 
Sbjct: 276 SSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCS 335

Query: 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 357
           LY ND IFDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP    
Sbjct: 336 LYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDR--NTRRDITLEASR-ESSKPRAIL 392

Query: 358 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
            PR        +  G  R+  E +       S + + K+LH AWHPT N+IA A  N+L+
Sbjct: 393 KPR-------KVCTGGKRKKDEINVD-----SLDFNKKILHTAWHPTDNIIAVAATNNLY 440

Query: 418 F 418
            
Sbjct: 441 I 441

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q29090|2ABA_PIG Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (Fragment) OS=Sus scrofa GN=PPP2R2A PE=2 SV=1

 Score =  351 bits (901), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 193/414 (46%), Positives = 263/414 (63%), Gaps = 37/414 (8%)

Query: 5   STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 64
           S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLW  
Sbjct: 44  SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW-- 101

Query: 65  RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 124
                 KI E D  P    E   L E++    +  P+      +     M          
Sbjct: 102 ------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMDLM------- 142

Query: 125 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
           V A  ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 143 VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANME 202

Query: 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
           +LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+
Sbjct: 203 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFS 261

Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
           EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 262 EIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 321

Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
           FDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +
Sbjct: 322 FDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTVLKPRKVCA 378

Query: 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
           S         R+  E S       S + + K+LH AWHP  N+IA A  N+L+ 
Sbjct: 379 SGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNLYI 420

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Sus scrofa (taxid: 9823)

>sp|P63150|2ABA_RABIT Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryctolagus cuniculus GN=PPP2R2A PE=2 SV=1

 Score =  350 bits (899), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 193/414 (46%), Positives = 263/414 (63%), Gaps = 37/414 (8%)

Query: 5   STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 64
           S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLW  
Sbjct: 65  SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW-- 122

Query: 65  RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 124
                 KI E D  P    E   L E++    +  P+      +     M          
Sbjct: 123 ------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMDLM------- 163

Query: 125 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
           V A  ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query: 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
           +LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+
Sbjct: 224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFS 282

Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
           EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342

Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
           FDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +
Sbjct: 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTVLKPRKVCA 399

Query: 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
           S         R+  E S       S + + K+LH AWHP  N+IA A  N+L+ 
Sbjct: 400 SGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNLYI 441

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q6P1F6|2ABA_MOUSE Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Mus musculus GN=Ppp2r2a PE=1 SV=1

 Score =  350 bits (899), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 193/414 (46%), Positives = 263/414 (63%), Gaps = 37/414 (8%)

Query: 5   STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 64
           S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLW  
Sbjct: 65  SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW-- 122

Query: 65  RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 124
                 KI E D  P    E   L E++    +  P+      +     M          
Sbjct: 123 ------KISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMDLM------- 163

Query: 125 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
           V A  ++++ +AH ++INSIS NSD ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query: 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
           +LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+
Sbjct: 224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFS 282

Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
           EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKIWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342

Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
           FDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +
Sbjct: 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTVLKPRKVCA 399

Query: 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
           S         R+  E S       S + + K+LH AWHP  N+IA A  N+L+ 
Sbjct: 400 SGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNLYI 441

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
359491379	507	PREDICTED: serine/threonine protein phos	0.997	0.828	0.760	0.0
297733754	503	unnamed protein product [Vitis vinifera]	0.997	0.834	0.760	0.0
224133594	520	predicted protein [Populus trichocarpa]	0.997	0.807	0.721	0.0
255540613	506	protein phosphatase pp2a regulatory subu	0.992	0.826	0.75	0.0
449440662	514	PREDICTED: serine/threonine protein phos	0.997	0.817	0.674	1e-164
356508685	506	PREDICTED: serine/threonine protein phos	0.985	0.820	0.645	1e-158
413950527	515	hypothetical protein ZEAMMB73_989132 [Ze	0.978	0.8	0.601	1e-143
212274793	514	uncharacterized protein LOC100191387 [Ze	0.978	0.801	0.605	1e-143
357135420	503	PREDICTED: serine/threonine protein phos	0.983	0.823	0.607	1e-142
224088860	521	predicted protein [Populus trichocarpa]	0.988	0.798	0.584	1e-142

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/430 (76%), Positives = 375/430 (87%), Gaps = 10/430 (2%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           +DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN S+FILSTNDKTIK
Sbjct: 79  LDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPNESLFILSTNDKTIK 138

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMA-- 115
           LWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY LEWTE   NM+  
Sbjct: 139 LWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEWTEKIDNMSPS 198

Query: 116 ----TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 171
                K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSADDLRINLWNLEISDQ
Sbjct: 199 QDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRINLWNLEISDQ 258

Query: 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231
           CFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+RQSA+CDH+ARIL+
Sbjct: 259 CFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSAICDHNARILQ 318

Query: 232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 291
              ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM+++PVA FKIHEHL
Sbjct: 319 HG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRMETSPVAIFKIHEHL 377

Query: 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351
           RPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS  GIT+EA +N NR
Sbjct: 378 RPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGSEEGITMEASRNPNR 437

Query: 352 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 411
           K  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLLHLAWHPTT  IACA
Sbjct: 438 KSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLLHLAWHPTTKFIACA 497

Query: 412 NGNSLFFHYA 421
            GNSL+ +YA
Sbjct: 498 AGNSLYMYYA 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/430 (76%), Positives = 374/430 (86%), Gaps = 10/430 (2%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           +DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN S+FILSTNDKTIK
Sbjct: 75  LDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPNESLFILSTNDKTIK 134

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMA-- 115
           LWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY LEWTE   NM+  
Sbjct: 135 LWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGYALEWTEKIDNMSPS 194

Query: 116 ----TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 171
                K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSADDLRINLWNLEISDQ
Sbjct: 195 QDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSADDLRINLWNLEISDQ 254

Query: 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231
           CFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+RQSA+CDH+ARIL+
Sbjct: 255 CFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDLRQSAICDHNARILQ 314

Query: 232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 291
              ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLKLWDIRM+++PVA FKIHEHL
Sbjct: 315 HG-ESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLWDIRMETSPVAIFKIHEHL 373

Query: 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351
           RPKLCDLYNND+IFDKFEC +SG GLHFATGSYSNLLRIFS+GVGS  GIT+EA +N NR
Sbjct: 374 RPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLRIFSYGVGSEEGITMEASRNPNR 433

Query: 352 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 411
           K  LQAAP+ARRSS+SNLTRG  RQA+EN SSG +ELS NLSSKLLHLAWHPTT  IACA
Sbjct: 434 KSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELSCNLSSKLLHLAWHPTTKFIACA 493

Query: 412 NGNSLFFHYA 421
            GNSL+ +YA
Sbjct: 494 AGNSLYMYYA 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/435 (72%), Positives = 361/435 (82%), Gaps = 15/435 (3%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS+FILSTNDKTIK
Sbjct: 87  LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGSLFILSTNDKTIK 146

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA----- 115
           LWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L+W E +A     
Sbjct: 147 LWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNLDWAEKIAKDTLS 206

Query: 116 -----TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 170
                TKI +   +  A C+KVY HAHDFNINSISNNSD ETF+S+DDLRINLWNLEISD
Sbjct: 207 SQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDDLRINLWNLEISD 266

Query: 171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 230
           QCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMRQSA+CDHSARIL
Sbjct: 267 QCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMRQSAICDHSARIL 326

Query: 231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 290
           +DA E  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLKLWD+RMDS+PVA FKIHEH
Sbjct: 327 QDA-ECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLWDMRMDSSPVAVFKIHEH 385

Query: 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 350
           LRPKL DLYN+DSIFDKFEC +SGDGLHFATGSYSN LRIFSHGVG+  GIT+EA KN N
Sbjct: 386 LRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYSNNLRIFSHGVGNEEGITIEASKNPN 445

Query: 351 RKPILQAAPRARRSSLSNLTRGLYRQ----AHENSSSGHHELSYNLSSKLLHLAWHPTTN 406
           R+ IL +  R RRSSLSN+ RG YRQ     HEN  SG +E S NLSSKLLHLAWHPTTN
Sbjct: 446 RRSILHSTSRPRRSSLSNMARGFYRQVDYVGHENYRSGSNEFSCNLSSKLLHLAWHPTTN 505

Query: 407 LIACANGNSLFFHYA 421
            IACA+GNSL  ++A
Sbjct: 506 FIACASGNSLLMYHA 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/428 (75%), Positives = 364/428 (85%), Gaps = 10/428 (2%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FILSTNDKTIK
Sbjct: 82  LDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFILSTNDKTIK 141

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA----- 115
           LWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WTEN +     
Sbjct: 142 LWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWTENNSSPFQE 199

Query: 116 --TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF 173
             TK A   ++  A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLWNLEISDQCF
Sbjct: 200 GHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLWNLEISDQCF 259

Query: 174 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 233
           NI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD SARIL+DA
Sbjct: 260 NIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCDQSARILQDA 319

Query: 234 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP 293
            E  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLKLWDIRMD  P++ FKIHEHLRP
Sbjct: 320 -ECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPLPISIFKIHEHLRP 378

Query: 294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 353
           KL DLYNNDSIFDKFEC +SGDGLHFATGSYSNLLRIFS+GVGS  GITVEA KN NRK 
Sbjct: 379 KLSDLYNNDSIFDKFECCISGDGLHFATGSYSNLLRIFSYGVGSENGITVEASKNPNRKS 438

Query: 354 ILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 413
           + ++  RARRSSLSNLTRG Y   +ENSSSG +E S +L+SKLLHLAWHPTTN+IAC++G
Sbjct: 439 LPRSTSRARRSSLSNLTRGFYWHGNENSSSGGNEFSCDLTSKLLHLAWHPTTNMIACSSG 498

Query: 414 NSLFFHYA 421
           NSL+ +YA
Sbjct: 499 NSLYMYYA 506

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/436 (67%), Positives = 349/436 (80%), Gaps = 16/436 (3%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           ++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++WC +PNGS FILSTNDKTIK
Sbjct: 80  LNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNDKTIK 139

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK--- 117
           LWKV++ KVK +KEM+   FVS EN LLAE +F +E +  S ++G H   +ENM      
Sbjct: 140 LWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKASLSNGCHWNLSENMEMSNVA 199

Query: 118 -------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 170
                  IA+  N+   RC+KVY HAHD+NINSISNNSD ETF+SADDLRINLWNLEISD
Sbjct: 200 CKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISD 259

Query: 171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 230
           QCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRGF+RLVDMRQSALCDHSA +L
Sbjct: 260 QCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILL 319

Query: 231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 290
           R   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNLKLWDI   S+PVA FKIHEH
Sbjct: 320 R-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEH 378

Query: 291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 350
           LRP+LC+LY+NDSIFD+FEC +S DGLHFATGSYSN LR+FS+G GS+ GIT E GK  +
Sbjct: 379 LRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNHLRMFSYGSGSSEGITTEVGKFPD 438

Query: 351 RKPILQ-----AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 405
           R+P LQ        RARRSSLSNLTR  +R   E+SSS   E S +L+SKLLHLAWHP+ 
Sbjct: 439 RRPHLQITRQATTRRARRSSLSNLTRDFFRHGSEHSSSDGSETSVDLNSKLLHLAWHPSE 498

Query: 406 NLIACANGNSLFFHYA 421
           NLIACA G+ LF +YA
Sbjct: 499 NLIACAAGSGLFVYYA 514

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/431 (64%), Positives = 340/431 (78%), Gaps = 16/431 (3%)

Query: 2   DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKL 61
           DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VRW  + +   FILSTNDKTIKL
Sbjct: 81  DFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVRWWMSNDSLQFILSTNDKTIKL 140

Query: 62  WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE--------- 112
           WKV++ KVK++KEM   P + SEN LLAE++F+      + A+GYHLEW E         
Sbjct: 141 WKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLETTANGYHLEWIEKTPKNHLLP 196

Query: 113 -NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 171
            ++  +I  + + + A+CQKVY +AH FNINSISNNSD ETF+SADDLRINLWNLE+SDQ
Sbjct: 197 QDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDYETFISADDLRINLWNLEVSDQ 256

Query: 172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231
           CFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+GF+RL D+RQ+A+CDH++R+ +
Sbjct: 257 CFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQGFIRLSDLRQAAICDHASRMFQ 316

Query: 232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 291
              ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+KLWD+RM+S+PVA FKIHEHL
Sbjct: 317 HG-ESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNMKLWDMRMESSPVAIFKIHEHL 375

Query: 292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351
           RPKL +LYNND IFDKFEC  SGDGLHFATGSYSN++RIFS G      I +E   N +R
Sbjct: 376 RPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRIFSPGSERKEEIKLEIRGNSHR 435

Query: 352 KPILQAAPRARRSSLSNLT-RGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIAC 410
           K I QA  R RR SLSNL  R +Y+ AH +S S   + S NLSSKLLH+AWHPT NL+ C
Sbjct: 436 KVIHQAKSRVRRPSLSNLIPREIYQHAHTDSESSRADFSCNLSSKLLHVAWHPTCNLVVC 495

Query: 411 ANGNSLFFHYA 421
           A  +SL  +YA
Sbjct: 496 AAESSLVLYYA 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413950527|gb|AFW83176.1| hypothetical protein ZEAMMB73_989132 [Zea mays]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/424 (60%), Positives = 325/424 (76%), Gaps = 12/424 (2%)

Query: 2   DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKL 61
           D + + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC A NG++++LSTNDKTIK 
Sbjct: 100 DHSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINQIKWCQAANGALYLLSTNDKTIKF 159

Query: 62  WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE----NMATK 117
           WKV+++KVKK+ EM+     +  N       +++    PS ++G  L+        +   
Sbjct: 160 WKVQEKKVKKLSEMNLDRSAAPANGSPGGVGYLS----PSLSNGNALKPGRLPLLRLPVV 215

Query: 118 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD 177
           + +   S+   C++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q FNI+D
Sbjct: 216 VTSQETSLATSCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIID 275

Query: 178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH 237
           +KP+NM+DLTEVITSAEFHP +CN LAYSSS+G +RLVD+RQSALCD   +I  +  E+ 
Sbjct: 276 VKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDTHYQIF-EQHEAP 334

Query: 238 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 297
           GS+SFFTEIIASISDIKF+ DG+HLLSRDYM LKLWD++M+S PVATF++HE+LRPKLCD
Sbjct: 335 GSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDVKMNSGPVATFQVHEYLRPKLCD 394

Query: 298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 357
           LY NDSIFDKFEC  SGDGL  ATGSYSN+ R+F  G G++   T+EA +N  R+  LQ 
Sbjct: 395 LYENDSIFDKFECCQSGDGLRVATGSYSNIFRVFGCGTGNSEATTLEATRNPTRRQ-LQN 453

Query: 358 APRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
             RA R SLS+LTR + R+  E++    +  SY+LS+KLLHLAWHP+ NLIACA  NSL+
Sbjct: 454 PTRATR-SLSSLTRAV-RRGGESTGIDVNGNSYDLSTKLLHLAWHPSENLIACAAANSLY 511

Query: 418 FHYA 421
            +YA
Sbjct: 512 MYYA 515

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212274793|ref|NP_001130293.1| uncharacterized protein LOC100191387 [Zea mays] gi|194688766|gb|ACF78467.1| unknown [Zea mays] gi|413950526|gb|AFW83175.1| hypothetical protein ZEAMMB73_989132 [Zea mays]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/423 (60%), Positives = 326/423 (77%), Gaps = 11/423 (2%)

Query: 2   DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKL 61
           D + + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC A NG++++LSTNDKTIK 
Sbjct: 100 DHSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINQIKWCQAANGALYLLSTNDKTIKF 159

Query: 62  WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 121
           WKV+++KVKK+ EM+     +  N       +++    PS ++G  L+       ++  V
Sbjct: 160 WKVQEKKVKKLSEMNLDRSAAPANGSPGGVGYLS----PSLSNGNALKPGRLPLLRLPVV 215

Query: 122 GN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM 178
            +   S+   C++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q FNI+D+
Sbjct: 216 TSQETSLATSCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDV 275

Query: 179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 238
           KP+NM+DLTEVITSAEFHP +CN LAYSSS+G +RLVD+RQSALCD   +I  +  E+ G
Sbjct: 276 KPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDTHYQIF-EQHEAPG 334

Query: 239 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 298
           S+SFFTEIIASISDIKF+ DG+HLLSRDYM LKLWD++M+S PVATF++HE+LRPKLCDL
Sbjct: 335 SRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDVKMNSGPVATFQVHEYLRPKLCDL 394

Query: 299 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358
           Y NDSIFDKFEC  SGDGL  ATGSYSN+ R+F  G G++   T+EA +N  R+  LQ  
Sbjct: 395 YENDSIFDKFECCQSGDGLRVATGSYSNIFRVFGCGTGNSEATTLEATRNPTRRQ-LQNP 453

Query: 359 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
            RA R SLS+LTR + R+  E++    +  SY+LS+KLLHLAWHP+ NLIACA  NSL+ 
Sbjct: 454 TRATR-SLSSLTRAV-RRGGESTGIDVNGNSYDLSTKLLHLAWHPSENLIACAAANSLYM 511

Query: 419 HYA 421
           +YA
Sbjct: 512 YYA 514

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135420|ref|XP_003569307.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Brachypodium distachyon]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/423 (60%), Positives = 320/423 (75%), Gaps = 9/423 (2%)

Query: 2   DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKL 61
           D++ + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   NG+ F+LSTNDKTIK 
Sbjct: 87  DYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQGTNGASFLLSTNDKTIKF 146

Query: 62  WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 121
           WKV+++KVKKI EM+  P  +  N   A  N +         +G  L        ++  V
Sbjct: 147 WKVQEKKVKKICEMNLDPSNAPANGSPAGNNMVGPST--RIPNGGFLRPGGPPLLRLPVV 204

Query: 122 GN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM 178
            +   S+ A C++VY HAHD++INSISNNSD ETF+SADDLRINLWNLEIS+Q FNI+D+
Sbjct: 205 TSQEISLAANCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIIDV 264

Query: 179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG 238
           KP+NM+DLTEVIT AEFHP +CN LAYSSS+G +RLVD+RQSALCD  +++  +  E+ G
Sbjct: 265 KPTNMEDLTEVITCAEFHPSHCNTLAYSSSKGSIRLVDLRQSALCDTHSQLF-EQHEAPG 323

Query: 239 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 298
           S+SFFTEIIASISDIKF+ DG+H+LSRDYM LKLWD+ MDS PVATF++HE+LRPKLCDL
Sbjct: 324 SRSFFTEIIASISDIKFSKDGRHILSRDYMTLKLWDVNMDSGPVATFQVHEYLRPKLCDL 383

Query: 299 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 358
           Y NDSIFDKFEC  SGDGL  ATGSYSN+ R+F+ G G +   T+EA +N  R+ I   A
Sbjct: 384 YENDSIFDKFECCQSGDGLQVATGSYSNIFRVFNCGAGGSEVTTLEATRNPTRRQIQNPA 443

Query: 359 PRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
             AR  SLS+LTR + R+  EN+    +  SY+LS+KLLHLAWHP  NLIACA  NSL+ 
Sbjct: 444 RPAR--SLSSLTR-VVRRGAENTGIDANGNSYDLSTKLLHLAWHPDENLIACAAANSLYM 500

Query: 419 HYA 421
           +YA
Sbjct: 501 YYA 503

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/436 (58%), Positives = 326/436 (74%), Gaps = 20/436 (4%)

Query: 1   MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIK 60
           MDF    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC + NG++F+LSTNDKTIK
Sbjct: 91  MDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTNDKTIK 150

Query: 61  LWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK--- 117
            WKV+++KVKKI +M+  P  ++ N  L   + ++  + P  A+G  L+    ++     
Sbjct: 151 FWKVQEKKVKKICDMNVDPAKAAGNGPLVGPS-ISTSSKPYTANGGCLDKPLGLSNDFSF 209

Query: 118 ------------IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN 165
                       + ++  S+  RC+++Y HAHD++INSISNNSD ETF+SADDLRINLWN
Sbjct: 210 PPGGVSSLHLPVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 269

Query: 166 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 225
           LEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSSRG +RLVDMRQSALCD 
Sbjct: 270 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMRQSALCDS 329

Query: 226 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 285
            +++  +  E  GS+SFFTEIIASISDIKFA DG+++LSRDYM LKLWDI MDS PV+TF
Sbjct: 330 HSKLFEE-QEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVSTF 388

Query: 286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 345
           ++HE+LRPKLCDLY NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA
Sbjct: 389 QVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTEATTLEA 448

Query: 346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 405
            KN  R+ + Q   R  R SL  L+RG +R+  + S +  +  +++ ++KLLHLAWHPT 
Sbjct: 449 SKNPMRRQV-QTPSRPSR-SLGTLSRG-FRRGADTSGADTNGNAFDFTTKLLHLAWHPTE 505

Query: 406 NLIACANGNSLFFHYA 421
           N +ACA  NSL+ +YA
Sbjct: 506 NSLACAASNSLYMYYA 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.969	0.814	0.581	2.6e-127
POMBASE|SPAC227.07c	463	pab1 "protein phosphatase regu	0.831	0.755	0.430	4.8e-95
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.935	0.815	0.441	7.8e-94
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.657	0.619	0.477	1.3e-92
WB|WBGene00006352	495	sur-6 [Caenorhabditis elegans	0.676	0.575	0.491	1.1e-91
UNIPROTKB|Q7ZX64	447	ppp2r2d "Serine/threonine-prot	0.657	0.619	0.460	3e-91
UNIPROTKB|J9P487	422	PPP2R2D "Uncharacterized prote	0.657	0.656	0.477	3.8e-91
UNIPROTKB|F1PX98	435	PPP2R2D "Uncharacterized prote	0.657	0.636	0.479	6.2e-91
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.657	0.615	0.467	2.7e-90
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.657	0.614	0.467	2.7e-90

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
 Identities = 245/421 (58%), Positives = 311/421 (73%)

Query:     8 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 67
             HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F+LSTNDKTIK WKV+++
Sbjct:    87 HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEK 146

Query:    68 KVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 120
             K+KKI EM+  P  SS        N L A+K         SF  G  +  +  +   + +
Sbjct:   147 KIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPG-GIP-SLRLPVVVTS 204

Query:   121 VGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKP 180
                ++ ARC++VY HAHD+         D ETF+SADDLR+NLWNLEIS+Q FNIVD+KP
Sbjct:   205 QETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKP 264

Query:   181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 240
             +NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALCD   ++  +  E+ GS+
Sbjct:   265 TNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEP-EAPGSR 323

Query:   241 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 300
             SFFTEIIASISDIKF+ DG+++LSRDYM LKLWDI MDS PVA++++HEHLRP+LCDLY 
Sbjct:   324 SFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYE 383

Query:   301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 360
             NDSIFDKFEC +SGDGL  ATGSYSNL R+F    GS    T+EA KN  R+ I Q   R
Sbjct:   384 NDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQI-QTPAR 442

Query:   361 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 420
               RS + ++TR + R+  E+  +  +  +Y+ ++KLLH+AWHPT N IACA  NSL+ +Y
Sbjct:   443 PSRS-IGSMTR-VVRRGSESPGTEANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYY 500

Query:   421 A 421
             A
Sbjct:   501 A 501

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

POMBASE|SPAC227.07c pab1 "protein phosphatase regulatory subunit Pab1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 716 (257.1 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
 Identities = 160/372 (43%), Positives = 224/372 (60%)

Query:    66 DQKVKKIK-----EMDHFPFVSSENTL----LAEKNF--MNEHN-PPSFAHGYHLEWTEN 113
             ++K+ KI+        HF   +++ T+    L EKN   + E+N   SF        T  
Sbjct:    89 EEKINKIRWCKRTNRAHFLLSTNDKTIKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTTP 148

Query:   114 MATKIANVGNS---VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISD 170
                ++  + +    + A  ++VY +AH +         D ET++SADDLRINLWNL ISD
Sbjct:   149 SQLRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISD 208

Query:   171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 230
               FNIVD+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++ 
Sbjct:   209 HSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLF 268

Query:   231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 290
              D  E   SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK+WD+ M+  PV T  +H+ 
Sbjct:   269 EDQ-EDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIPLHDV 327

Query:   291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGK 347
             LR KLCDLY ND IFDKFEC+ SGD  H  +GSYSN   I+   S   G  G I ++A K
Sbjct:   328 LRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADK 387

Query:   348 N--ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTT 405
                  RK      P+      +N  R   + A  ++S G    + + + K+LH +WHP  
Sbjct:   388 AAFRARKSAANNVPKLNAVK-NNDWRSQPQAAMGSASVGLDPDNLDYNKKILHASWHPFE 446

Query:   406 NLIACANGNSLF 417
             + +A A  N+LF
Sbjct:   447 DSVAIAATNNLF 458

GO:0000159 "protein phosphatase type 2A complex" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISO

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IGI

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IMP

GO:0034047 "regulation of protein phosphatase type 2A activity" evidence=IC

GO:0034260 "negative regulation of GTPase activity" evidence=IGI

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IMP

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IMP

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 191/433 (44%), Positives = 269/433 (62%)

Query:     9 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 68
             PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+L+TNDKTIKLWKV ++K
Sbjct:    66 PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLTTNDKTIKLWKVYEKK 125

Query:    69 VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---- 124
             +K++         S   +L +     N  +P    + Y+     NM   + N  N+    
Sbjct:   126 IKQVSTSATTTGPSYNGSLASN----NTRSPSHTTYIYNSSGAHNMNNNMNNSNNNNNLN 181

Query:   125 -------------VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQ 171
                          V A  +K++ +AH +         D ET++S+DDLRI+LWNL I+ +
Sbjct:   182 NFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDDLRIHLWNLNINTE 241

Query:   172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 231
             CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R SALCD+ A++  
Sbjct:   242 CFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLRSSALCDNHAKVFE 301

Query:   232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHL 291
             +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LKLWDI M++ PV T +IH++L
Sbjct:   302 EY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINMENKPVKTIQIHDYL 360

Query:   292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 351
             +PKLCDLY ND IFDKFEC+++ DG    TGSY N L I+               +N  +
Sbjct:   361 KPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIYD--------------RNSKQ 406

Query:   352 KPILQAAPRARRSSLSNLTRGL-YRQAHENSSSGH--HELSYNLSSKLLHLAWHPTTNLI 408
                L+A+ +A +S    LT  +  R + +        H  +   + K LH AWHP  NLI
Sbjct:   407 DVCLEASKQATKSKTKTLTTKMKLRSSKKEPKKPEDIHPDAIEYTKKTLHCAWHPKDNLI 466

Query:   409 ACANGNSLFFHYA 421
             A    N+++ + A
Sbjct:   467 AVGAANTVYLYAA 479

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 702 (252.2 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
 Identities = 140/293 (47%), Positives = 197/293 (67%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF+N G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   343 FDKFECCWNGSDSAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 395

Query:   365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                  T G  ++   N  S    L +N   K+LH AWHPT N+IA A  N+L+
Sbjct:   396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

WB|WBGene00006352 sur-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 712 (255.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 145/295 (49%), Positives = 196/295 (66%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++VY +AH +         D ETF+SADDLR+NLWNLEI+++ FNIVD+KP+NM+
Sbjct:   204 VEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANME 263

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP  CN   YSSS+G +RL DMR  ALCD  A+I  +  E   S+SFF+
Sbjct:   264 ELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEP-EDPQSRSFFS 322

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EIIAS+SD+KF+++G++LL+RDY+ +K+WD+ M+S PV T+ +H +LR KLC LY NDSI
Sbjct:   323 EIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSI 382

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ--AAPRAR 362
             FDKFEC  SGD  H  TGSY NL R ++ G  +    T EA   E    +      P A+
Sbjct:   383 FDKFECDWSGDDKHILTGSYHNLFRSYARG-NNQDAKTWEARPQEPHSQLRSRFVVPSAK 441

Query:   363 RSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
             R   +NL+        E+ SS   +L ++   K+LH AWHP  N+IA A  N+L+
Sbjct:   442 RKR-NNLSSS-GETTEEDLSSD--QLQFD--RKILHTAWHPKDNIIALAATNNLY 490

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040026 "positive regulation of vulval development" evidence=IGI;IMP

UNIPROTKB|Q7ZX64 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus laevis (taxid:8355)]

 Score = 689 (247.6 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
 Identities = 135/293 (46%), Positives = 197/293 (67%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D +T++SADDLR+NLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHQTYLSADDLRVNLWHLEITDRSFNIVDIKPANME 223

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP +C++  YSSS+G +RL DMR +ALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCHMFVYSSSKGTIRLCDMRDAALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T+++HE+LR KLC LY ND I
Sbjct:   283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCI 342

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   343 FDKFECCWNGSDSSIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRATLKPR---- 395

Query:   365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                  T G  ++   N  S    L +N   K+LH AWHPT N+IA A  N+L+
Sbjct:   396 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPTDNIIAVAATNNLY 440

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007067 "mitosis" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IMP

GO:0010458 "exit from mitosis" evidence=IMP

UNIPROTKB|J9P487 PPP2R2D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 695 (249.7 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
 Identities = 140/293 (47%), Positives = 193/293 (65%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP NM+
Sbjct:   139 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPVNME 198

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  A+   +  E   S+SFF+
Sbjct:   199 ELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEP-EDPSSRSFFS 257

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T ++HE+LR KLC LY ND I
Sbjct:   258 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQVHEYLRSKLCSLYENDCI 317

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
             FDKFEC  SG      TGSY+N  R+F     +   +T+EA + EN KP     PR    
Sbjct:   318 FDKFECCWSGSDSAIMTGSYNNFFRMFDRN--TRRDVTLEASR-ENSKPRASLKPR---- 370

Query:   365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                 +  G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   371 ---KVCTGGKRKKDEISVDS---LDFN--KKILHTAWHPAENIIAVAATNNLY 415

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|F1PX98 PPP2R2D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 693 (249.0 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
 Identities = 141/294 (47%), Positives = 194/294 (65%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP NM+
Sbjct:   151 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPVNME 210

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  A+   +  E   S+SFF+
Sbjct:   211 ELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEP-EDPSSRSFFS 269

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF++ G+++++RDY+++K+WD+ M+S PV T ++HE+LR KLC LY ND I
Sbjct:   270 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQVHEYLRSKLCSLYENDCI 329

Query:   305 FDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 363
             FDKFEC  SG D     TGSY+N  R+F     +   +T+EA + EN KP     PR   
Sbjct:   330 FDKFECCWSGSDSSAIMTGSYNNFFRMFDRN--TRRDVTLEASR-ENSKPRASLKPR--- 383

Query:   364 SSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                  +  G  R+  E S      L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   384 ----KVCTGGKRKKDEISVDS---LDFN--KKILHTAWHPAENIIAVAATNNLY 428

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 686 (246.5 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
 Identities = 137/293 (46%), Positives = 196/293 (66%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   286 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 345

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   346 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 398

Query:   365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                  T G  ++   N  S    L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   399 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 443

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 686 (246.5 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
 Identities = 137/293 (46%), Positives = 196/293 (66%)

Query:   125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
             EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 346

Query:   305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
             FDKFEC  +G      TGSY+N  R+F     +   IT+EA + E+ KP     PR    
Sbjct:   347 FDKFECCWNGSDGAIMTGSYNNFFRMFDRN--TRRDITLEASR-ESSKPRAILKPR---- 399

Query:   365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
                  T G  ++   N  S    L +N   K+LH AWHP  N+IA A  N+L+
Sbjct:   400 --KVCTGGKRKKDEINVDS----LDFN--KKILHTAWHPMENIIAVAATNNLY 444

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5711	0.9738	0.7809	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.5961	0.9691	0.8143	yes	no
Q54Q99	PH2AB_DICDI	No assigned EC number	0.4530	0.9524	0.8302	yes	no
Q6DIY3	2ABD_XENTR	No assigned EC number	0.4584	0.8693	0.8187	yes	no
P36876	2ABA_RAT	No assigned EC number	0.4661	0.8954	0.8434	yes	no
Q29090	2ABA_PIG	No assigned EC number	0.4661	0.8954	0.8849	yes	no
Q12702	2ABA_SCHPO	No assigned EC number	0.4821	0.9026	0.8207	yes	no
P63151	2ABA_HUMAN	No assigned EC number	0.4661	0.8954	0.8434	yes	no
P63150	2ABA_RABIT	No assigned EC number	0.4661	0.8954	0.8434	yes	no
Q6P1F6	2ABA_MOUSE	No assigned EC number	0.4661	0.8954	0.8434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	1e-116
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-04

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  346 bits (888), Expect = e-116
 Identities = 179/415 (43%), Positives = 247/415 (59%), Gaps = 24/415 (5%)

Query: 8   HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ 67
             EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+LSTNDKTIKLWK+ ++
Sbjct: 60  GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119

Query: 68  KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 127
            +K          V +EN L    +            G      E +  +++     + A
Sbjct: 120 NLK----------VVAENNLSDSFHSPMG--------GPLTSTKELLLPRLSEHDEIIAA 161

Query: 128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 187
           +  +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  FNIVD+KP NM++LT
Sbjct: 162 KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELT 221

Query: 188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 247
           EVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++            FF EI+
Sbjct: 222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIV 280

Query: 248 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 307
           +SISD KF+++G+++LSRDY+ +K+WD+ M   P+ T  +H  L  +L D+Y ND+IFDK
Sbjct: 281 SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340

Query: 308 FECSVSGDGLHFATGSYSNLLRIF---SHGVGSAGGITVEAGKN-ENRKPILQAAPRARR 363
           FE S SGD  H  +GSYSN   I+   S G    G +   A  + E+ K   +     ++
Sbjct: 341 FEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKK 400

Query: 364 SSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 417
             L N        + +    +     + +L  K+LH +WHP  + +A A  N+LF
Sbjct: 401 DKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSWHPFEDSVAIAATNNLF 455

Length = 460

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 48/229 (20%), Positives = 81/229 (35%), Gaps = 60/229 (26%)

Query: 135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 193
             H   ++S++ + D     S+  D  I +W++E       +           T+ + S 
Sbjct: 90  TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL--------RGHTDWVNSV 141

Query: 194 EFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 252
            F P        SSS+ G ++L D+R +  C  +                 T     ++ 
Sbjct: 142 AFSP--DGTFVASSSQDGTIKLWDLR-TGKCVAT----------------LTGHTGEVNS 182

Query: 253 IKFANDGQHLL--SRDYMNLKLWDIRMDSTPVATFKIHE--------HLRPKLCDLYNND 302
           + F+ DG+ LL  S D   +KLWD+      + T + HE             L    + D
Sbjct: 183 VAFSPDGEKLLSSSSD-GTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGYLLASGSED 240

Query: 303 S---IFD--KFECS--------------VSGDGLHFATGSYSNLLRIFS 332
               ++D    EC                S DG   A+GS    +RI+ 
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
PTZ00421	493	coronin; Provisional	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG0649	325	consensus WD40 repeat protein [General function pr	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
KOG1334	559	consensus WD40 repeat protein [General function pr	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.4
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
KOG2321	703	consensus WD40 repeat protein [General function pr	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.27
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
KOG2315	566	consensus Predicted translation initiation factor	99.09
KOG2314	698	consensus Translation initiation factor 3, subunit	99.09
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
KOG2314	698	consensus Translation initiation factor 3, subunit	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	98.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.93
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.8
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
KOG2695	425	consensus WD40 repeat protein [General function pr	98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.68
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.65
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.55
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.46
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.4
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.37
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.31
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.27
KOG2695	425	consensus WD40 repeat protein [General function pr	98.26
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.21
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.19
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.14
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.07
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.02
KOG3621	726	consensus WD40 repeat-containing protein [General	98.01
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.99
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.97
KOG3621	726	consensus WD40 repeat-containing protein [General	97.96
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.95
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.9
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.79
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.78
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.58
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.47
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.37
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.34
PRK13616	591	lipoprotein LpqB; Provisional	97.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.31
PRK02888	635	nitrous-oxide reductase; Validated	97.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.23
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.2
KOG2395	644	consensus Protein involved in vacuole import and d	97.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.09
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.05
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.88
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.86
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.64
COG3391	381	Uncharacterized conserved protein [Function unknow	96.62
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.49
COG3391	381	Uncharacterized conserved protein [Function unknow	96.45
KOG2395	644	consensus Protein involved in vacuole import and d	96.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.31
PRK13616	591	lipoprotein LpqB; Provisional	96.27
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.24
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.17
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.02
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.92
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.85
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.76
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.68
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.4
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.28
KOG2444	238	consensus WD40 repeat protein [General function pr	95.22
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.15
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.05
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.02
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.94
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.83
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.81
KOG2444	238	consensus WD40 repeat protein [General function pr	94.65
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.35
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.25
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.46
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.28
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.21
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.02
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.79
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.48
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.38
PRK13684	334	Ycf48-like protein; Provisional	92.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.76
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.38
COG4590	733	ABC-type uncharacterized transport system, permeas	91.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.89
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.51
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.82
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.51
COG5167	776	VID27 Protein involved in vacuole import and degra	88.38
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.38
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.0
KOG2247	615	consensus WD40 repeat-containing protein [General	87.98
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.67
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.34
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.13
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.5
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.47
COG5167	776	VID27 Protein involved in vacuole import and degra	86.16
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.07
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.94
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.72
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.14
PRK13684	334	Ycf48-like protein; Provisional	84.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.63
COG4590	733	ABC-type uncharacterized transport system, permeas	83.22
KOG2247	615	consensus WD40 repeat-containing protein [General	82.57
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.56
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.63
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.52
PRK10115	686	protease 2; Provisional	81.02

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-50  Score=334.62  Aligned_cols=326  Identities=16%  Similarity=0.248  Sum_probs=274.1

Q ss_pred             cccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           25 DYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        25 ~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .+..++ ||.++|.++.|  +|++..|++|+.|.++|+||+.+... ......|...            ++|++++|++.
T Consensus       106 rCssS~~GH~e~Vl~~~f--sp~g~~l~tGsGD~TvR~WD~~TeTp-~~t~KgH~~W------------VlcvawsPDgk  170 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQF--SPTGSRLVTGSGDTTVRLWDLDTETP-LFTCKGHKNW------------VLCVAWSPDGK  170 (480)
T ss_pred             eeccccCCCCCcEEEEEe--cCCCceEEecCCCceEEeeccCCCCc-ceeecCCccE------------EEEEEECCCcc
Confidence            333343 89999999999  78999999999999999999998662 2223345554            55566667888


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-----CCCEEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~  177 (421)
                      .+++|+.  ++.+++|+..++.  +..+.+ .+|...|++|+|.|     ..++||++ .||+|+|||+. .+.++.++ 
T Consensus       171 ~iASG~~--dg~I~lwdpktg~--~~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~l-  243 (480)
T KOG0271|consen  171 KIASGSK--DGSIRLWDPKTGQ--QIGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTL-  243 (480)
T ss_pred             hhhcccc--CCeEEEecCCCCC--cccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEe-
Confidence            8888887  7789999988871  334555 99999999999966     67899998 99999999998 66676654 


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc-
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-  256 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-  256 (421)
                            .+|+.+|+|++|--+|  +|++++.|++|++|+...|..+    +.+.+|             ...|+.++.+ 
T Consensus       244 ------sgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkGH-------------ahwvN~lalsT  298 (480)
T KOG0271|consen  244 ------SGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKGH-------------AHWVNHLALST  298 (480)
T ss_pred             ------ccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhccc-------------chheeeeeccc
Confidence                  8999999999998765  9999999999999999988766    666664             6677777666 


Q ss_pred             ----------CCC-------------------------CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccC
Q 014644          257 ----------NDG-------------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  300 (421)
Q Consensus       257 ----------~~~-------------------------~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                                |.+                         +.+++|+| .++.+|+.....+++.++.+|+..+        
T Consensus       299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV--------  370 (480)
T KOG0271|consen  299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV--------  370 (480)
T ss_pred             hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe--------
Confidence                      223                         34999988 9999999877678999999999976        


Q ss_pred             CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-cc
Q 014644          301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HE  379 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~i  379 (421)
                             ..+.||||+++||++|.|..|++|+.+++ +....+++|-++|..++|+.+  .+     +|++|+.|.+ ++
T Consensus       371 -------n~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaD--sR-----LlVS~SkDsTLKv  435 (480)
T KOG0271|consen  371 -------NHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSAD--SR-----LLVSGSKDSTLKV  435 (480)
T ss_pred             -------eeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccC--cc-----EEEEcCCCceEEE
Confidence                   89999999999999999999999999998 778999999999999999998  44     9999999999 99


Q ss_pred             C--CCCCccccccccccCeEEEEEccCCCeEEEecCCc-eEEEe
Q 014644          380 N--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY  420 (421)
Q Consensus       380 w--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~i~~  420 (421)
                      |  ........+-+|...|..+.|+|||..+++|+.|. +++|.
T Consensus       436 w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  436 WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9  55566777889999999999999999999999665 77774

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-47  Score=309.81  Aligned_cols=373  Identities=52%  Similarity=0.826  Sum_probs=314.8

Q ss_pred             CceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccc
Q 014644            9 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL   88 (421)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~   88 (421)
                      +||++..+||+|+|+|+|+++++.+++|+.++|++..+...++.+..|++|++|.+.....+. ...+.+.         
T Consensus        60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~---------  129 (433)
T KOG1354|consen   60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE---------  129 (433)
T ss_pred             cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc---------
Confidence            599999999999999999999999999999999977778899999999999999998755322 1111111         


Q ss_pred             cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCC
Q 014644           89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEI  168 (421)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~  168 (421)
                        ..             +.+...+...+.+-..+......|.+++..+|+-.|+++.++.|++.+++++|-.|.+|+++.
T Consensus       130 --~~-------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei  194 (433)
T KOG1354|consen  130 --EG-------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI  194 (433)
T ss_pred             --cC-------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence              00             111111222455555666667789999989999999999999999999999999999999998


Q ss_pred             CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc
Q 014644          169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  248 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  248 (421)
                      ..+.+.++++||.++..-+.-|++..|+|..++.++..+..|+|++.|+|+..+++.+.+.++. .+.|..+.++.+.-.
T Consensus       195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIs  273 (433)
T KOG1354|consen  195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIIS  273 (433)
T ss_pred             cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhh
Confidence            9999999999999999999999999999998899999999999999999999999999999998 899999999999999


Q ss_pred             ceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644          249 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  328 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i  328 (421)
                      .|..+.|+++|+|+++.+.-+|++||+....+++.++..|......+|.+|++|+||+-+.++|+.++.++++|+..+.+
T Consensus       274 SISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f  353 (433)
T KOG1354|consen  274 SISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF  353 (433)
T ss_pred             hhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence            99999999999999999889999999988899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCe
Q 014644          329 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNL  407 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~  407 (421)
                      +++++..+.....++.+...+...-....        ...+.+++.+.. .+|      ....++...+...+|||..+.
T Consensus       354 rvf~~~~gsk~d~tl~asr~~~~~~~~~k--------~~~V~~~g~r~~~~~~------vd~ldf~kkilh~aWhp~en~  419 (433)
T KOG1354|consen  354 RVFNLARGSKEDFTLEASRKNMKPRKVLK--------LRLVSSSGKRKRDEIS------VDALDFRKKILHTAWHPKENS  419 (433)
T ss_pred             EEecCCCCcceeecccccccCCccccccc--------ceeeecCCCccccccc------cchhhhhhHHHhhccCCccce
Confidence            99998888776667666555421111110        123455554444 444      445567788899999999999


Q ss_pred             EEEecCCceEEEeC
Q 014644          408 IACANGNSLFFHYA  421 (421)
Q Consensus       408 la~~~~~~~~i~~~  421 (421)
                      +|++..+++|||++
T Consensus       420 ia~aatnnlyif~~  433 (433)
T KOG1354|consen  420 IAVAATNNLYIFQD  433 (433)
T ss_pred             eeeeecCceEEecC
Confidence            99999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9e-45  Score=305.51  Aligned_cols=280  Identities=16%  Similarity=0.212  Sum_probs=246.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ++-+.+|..+.|  +.++..|+|||.+|.++||+..+..                                         
T Consensus       172 ~gd~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~-----------------------------------------  208 (459)
T KOG0272|consen  172 VGDTRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCN-----------------------------------------  208 (459)
T ss_pred             ccCCCcceeeEe--ecCCCeEEEeecCCceeEeecCCcc-----------------------------------------
Confidence            455789999999  7999999999999999999987743                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                         .+.++ .+|...|.++.|+|.  +..+|+| .||++++|++. +..++.       .+.+|
T Consensus       209 -------------------~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH  260 (459)
T KOG0272|consen  209 -------------------LLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGH  260 (459)
T ss_pred             -------------------eeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcc
Confidence                               23445 899999999999996  6689999 99999999998 445553       45899


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ...|..++|+|+| ++|++++.|.+-++||++++...    ...++             |...|.+++|.|||.++++|+
T Consensus       261 ~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~QEG-------------Hs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  261 LARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQEG-------------HSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             hhhheeeeecCCC-ceeeecccccchhhcccccchhh----Hhhcc-------------cccccceeEecCCCceeeccC
Confidence            9999999999999 99999999999999999997643    33444             588999999999999999987


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      . ..-+|||+++ +.++..+.+|...+               .+++|+|+|..||||+.|++++|||++.. ....++.+
T Consensus       323 lD~~~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipA  385 (459)
T KOG0272|consen  323 LDSLGRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPA  385 (459)
T ss_pred             ccchhheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccc-ccceeccc
Confidence            5 8889999998 99999999998876               89999999999999999999999999987 66899999


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      |.+.|..+.|.|. .|.     +|++++.|++ +||  .....+..+.||...|.++..+||+..+++++ +..+.+|..
T Consensus       386 H~nlVS~Vk~~p~-~g~-----fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQ-EGY-----FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             ccchhhheEeccc-CCe-----EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            9999999999983 244     9999999999 999  44567778889999999999999999999999 667999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.6e-41  Score=277.91  Aligned_cols=294  Identities=15%  Similarity=0.174  Sum_probs=245.3

Q ss_pred             cccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEE
Q 014644           85 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  163 (421)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~l  163 (421)
                      ++....+.+++..++|++..+++|+-  +.++|+||..+.   .+..+. ++|.+.|.|++|+|||+.||+| .||+|++
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsG--D~TvR~WD~~Te---Tp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSG--DTTVRLWDLDTE---TPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCC--CceEEeeccCCC---Ccceee-cCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            34445678899999999999999986  668999999998   888888 9999999999999999999999 9999999


Q ss_pred             EeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC
Q 014644          164 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  239 (421)
Q Consensus       164 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~  239 (421)
                      ||.+++++..+       .+.+|...|++++|.|-.    +.+|++++.||.|+|||+..+...    ..+.+       
T Consensus       184 wdpktg~~~g~-------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~----~~lsg-------  245 (480)
T KOG0271|consen  184 WDPKTGQQIGR-------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV----RTLSG-------  245 (480)
T ss_pred             ecCCCCCcccc-------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE----EEecc-------
Confidence            99996666554       459999999999998632    378999999999999999987654    45555       


Q ss_pred             cccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-
Q 014644          240 KSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-  317 (421)
Q Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-  317 (421)
                            |..+|+++.|--+| +|++|+. ++|++|+... +.....+++|...+..++=.  .|..  ...-+|.|.++ 
T Consensus       246 ------HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lals--Tdy~--LRtgaf~~t~~~  313 (480)
T KOG0271|consen  246 ------HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALS--TDYV--LRTGAFDHTGRK  313 (480)
T ss_pred             ------CccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHHhhcccchheeeeecc--chhh--hhcccccccccc
Confidence                  48999999998655 8888876 9999999985 99999999999887543200  0000  01123444444 


Q ss_pred             ------------------------EEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          318 ------------------------HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       318 ------------------------~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                              .|++|++|.++.+|+-....+.+..+.+|...|+.+.|+|+  ++     ++|+++
T Consensus       314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--~r-----~IASaS  386 (480)
T KOG0271|consen  314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--GR-----YIASAS  386 (480)
T ss_pred             CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--cc-----EEEEee
Confidence                                    49999999999999988776778899999999999999999  44     999999


Q ss_pred             ccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          374 YRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       374 ~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      .|.. ++|  ..+..+....+|-..|..++|+.|.++|++++ +..|.+|+.
T Consensus       387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            9999 999  67788889999999999999999999999999 556999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-38  Score=255.43  Aligned_cols=280  Identities=15%  Similarity=0.159  Sum_probs=236.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|..+|.++.|  ++|+++++++|.||.+.|||.-+.. ...                                     
T Consensus        52 kGH~~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~ha-------------------------------------   92 (343)
T KOG0286|consen   52 KGHLNKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHA-------------------------------------   92 (343)
T ss_pred             cccccceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeE-------------------------------------
Confidence            489999999999  7999999999999999999976643 111                                     


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDD  185 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~  185 (421)
                                              + .-....|..++|+|.|+++|+| -|+...||++...  +..++..    ..+.+
T Consensus        93 ------------------------i-pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~----r~l~g  143 (343)
T KOG0286|consen   93 ------------------------I-PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS----RELAG  143 (343)
T ss_pred             ------------------------E-ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceee----eeecC
Confidence                                    1 2334579999999999999999 9999999999843  2122211    35689


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEE
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS  264 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  264 (421)
                      |++.+.|+.|.+|  ..|+++|.|.+..+||+++++..    ..|.+             |.+.|.+++++| +++.+++
T Consensus       144 HtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f~G-------------H~gDV~slsl~p~~~ntFvS  204 (343)
T KOG0286|consen  144 HTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVFHG-------------HTGDVMSLSLSPSDGNTFVS  204 (343)
T ss_pred             ccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEecC-------------CcccEEEEecCCCCCCeEEe
Confidence            9999999999996  58999999999999999998755    55555             599999999999 9999999


Q ss_pred             ec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          265 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       265 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      |+ |+..+|||++. +..++.|.+|+..+               .+++|.|+|.-+++|++|++.++||++.. +.+..+
T Consensus       205 g~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~y  267 (343)
T KOG0286|consen  205 GGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVY  267 (343)
T ss_pred             cccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCCCceeEEEeecCC-cEEeee
Confidence            85 59999999996 89999999999855               89999999999999999999999999987 445555


Q ss_pred             ec--CCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          344 EA--GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       344 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      +.  -..++.+++|+.+  |+     +|.+|..|.. .+|  -.++....+.+|+.+|.++..+|||..|++|+ +..++
T Consensus       268 s~~~~~~gitSv~FS~S--GR-----lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr  340 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKS--GR-----LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR  340 (343)
T ss_pred             ccCcccCCceeEEEccc--cc-----EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence            43  3457899999988  66     8999999999 999  45677888889999999999999999999999 56699


Q ss_pred             EEe
Q 014644          418 FHY  420 (421)
Q Consensus       418 i~~  420 (421)
                      ||+
T Consensus       341 iW~  343 (343)
T KOG0286|consen  341 IWA  343 (343)
T ss_pred             ecC
Confidence            995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5e-40  Score=276.98  Aligned_cols=241  Identities=18%  Similarity=0.263  Sum_probs=213.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|.++.|.|-.++..+|||+.||++++|++++.                                          
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------------------------------------  251 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------------------------------------  251 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------------------------------------
Confidence            48999999999953323678999999999999998874                                          


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        .++..+ .+|..+|..++|+|+|++|+++ .|.+-++||+++..+.+.        .++|..
T Consensus       252 ------------------~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGHs~  304 (459)
T KOG0272|consen  252 ------------------TPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGHSK  304 (459)
T ss_pred             ------------------cchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccccc
Confidence                              333445 8999999999999999999999 999999999995555443        289999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+||| .++++|+.|..-+|||+++++.+    ..+.+             |..+|.+++|+|+|..||+|+. 
T Consensus       305 ~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  305 GVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGSSD  366 (459)
T ss_pred             ccceeEecCCC-ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecCCC
Confidence            99999999999 99999999999999999999865    55555             4889999999999999999975 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      ++++|||++. ...+.++.+|...+               ..++|+| .|.+|++++.|++++||.-.+. .+.+.+.||
T Consensus       367 nt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGH  429 (459)
T KOG0272|consen  367 NTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGH  429 (459)
T ss_pred             CcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCC
Confidence            9999999997 77789999999877               7999999 6899999999999999999988 889999999


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      .+.|-++..+++       ...+++++.|++ ++|.
T Consensus       430 e~kV~s~Dis~d-------~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 EGKVISLDISPD-------SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccceEEEEeccC-------CceEEEeccCceeeecc
Confidence            999999999999       448999999999 9993

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=249.50  Aligned_cols=285  Identities=15%  Similarity=0.163  Sum_probs=228.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|++.|+.++..+ .+.+.+++++.|.++.+|++.....                                        
T Consensus        12 ~gh~d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~dd~----------------------------------------   50 (315)
T KOG0279|consen   12 EGHTDWVTALAIKI-KNSDILVSASRDKTIIVWKLTSDDI----------------------------------------   50 (315)
T ss_pred             cCCCceEEEEEeec-CCCceEEEcccceEEEEEEeccCcc----------------------------------------
Confidence            47999999999953 3578999999999999999876420                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                  .   -+.+++.+ .||+..|..+..++||++.+++ .|+++++||+. .++..+.+       .+|..
T Consensus        51 ------------~---~G~~~r~~-~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~~t~~f-------~GH~~  106 (315)
T KOG0279|consen   51 ------------K---YGVPVRRL-TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGESTRRF-------VGHTK  106 (315)
T ss_pred             ------------c---cCceeeee-eccceEecceEEccCCceEEeccccceEEEEEec-CCcEEEEE-------EecCC
Confidence                        0   01566777 8999999999999999999999 99999999999 45655544       89999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD  266 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~  266 (421)
                      .|.+++|+||. ..|++|+.|.+|++|++......     .+..           ..+.+.|+++.|+|+  ..+|++++
T Consensus       107 dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-----t~~~-----------~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen  107 DVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-----TIHE-----------DSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             ceEEEEecCCC-ceeecCCCcceeeeeeecccEEE-----EEec-----------CCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            99999999998 99999999999999999875422     1111           112578999999998  67888887


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      . +++++||+++ .+....+.+|.+.+               +.+++||||..+++|+.||.+.+||++.++.  .....
T Consensus       170 ~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~  231 (315)
T KOG0279|consen  170 WDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLE  231 (315)
T ss_pred             CCceEEEEccCC-cchhhccccccccE---------------EEEEECCCCCEEecCCCCceEEEEEccCCce--eEecc
Confidence            5 9999999996 88888898998866               7899999999999999999999999997733  55567


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCcccCCCC--C----cccccccc-----ccCeEEEEEccCCCeEEEec-C
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS--G----HHELSYNL-----SSKLLHLAWHPTTNLIACAN-G  413 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~--~----~~~~~~~~-----~~~v~~~~~spd~~~la~~~-~  413 (421)
                      |...|++++|+|.+.       .|+.+.....+||+..  .    ......+.     .-...+++|++||..|.+|- +
T Consensus       232 a~~~v~sl~fspnry-------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td  304 (315)
T KOG0279|consen  232 AFDIVNSLCFSPNRY-------WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD  304 (315)
T ss_pred             CCCeEeeEEecCCce-------eEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence            889999999999842       5666665556999332  1    12222222     22356899999999999998 6


Q ss_pred             CceEEEeC
Q 014644          414 NSLFFHYA  421 (421)
Q Consensus       414 ~~~~i~~~  421 (421)
                      +.|++|+.
T Consensus       305 ~~irv~qv  312 (315)
T KOG0279|consen  305 NVIRVWQV  312 (315)
T ss_pred             CcEEEEEe
Confidence            67999963

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-36  Score=261.46  Aligned_cols=372  Identities=13%  Similarity=0.185  Sum_probs=267.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      -+|...++-.+|  +|.|.++|+|...|+|||||....+ +.+-.-....++|.+++|.....+|.+....+.. +...-
T Consensus        56 tEH~~~vtVAky--SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F  132 (603)
T KOG0318|consen   56 TEHAHQVTVAKY--SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVF  132 (603)
T ss_pred             ccccceeEEEEe--CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEE
Confidence            478999999999  6889999999999999999977644 4444444577899999999998888887765443 22211


Q ss_pred             cccccc---------------------ceeEEeec--------ccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC
Q 014644          109 EWTENM---------------------ATKIANVG--------NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD  158 (421)
Q Consensus       109 ~~~~~~---------------------~~~~~~~~--------~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d  158 (421)
                      .++++.                     -.|+-...        .+...+-...+ +.|..-|+|+.|+|||.++++. .|
T Consensus       133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCC
Confidence            111111                     11111110        01112233345 6789999999999999999998 99


Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccc------------
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS------------  226 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~------------  226 (421)
                      |++.+||=. .++.+..++    .-.+|++.|++++|+||+ ..+++++.|.+++|||+.+..+..+.            
T Consensus       212 gki~iyDGk-tge~vg~l~----~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG  285 (603)
T KOG0318|consen  212 GKIYIYDGK-TGEKVGELE----DSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG  285 (603)
T ss_pred             ccEEEEcCC-CccEEEEec----CCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence            999999998 455555542    236899999999999999 99999999999999999886542110            


Q ss_pred             ----------------hhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc--------
Q 014644          227 ----------------ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--------  281 (421)
Q Consensus       227 ----------------~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~--------  281 (421)
                                      +..++.  ..+.....+.+|...|+++..+||+++|++|+. |.|.-|+..+ +..        
T Consensus       286 ~lWqkd~lItVSl~G~in~ln~--~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~g~~h  362 (603)
T KOG0318|consen  286 CLWQKDHLITVSLSGTINYLNP--SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLAGKGH  362 (603)
T ss_pred             EEEeCCeEEEEEcCcEEEEecc--cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccccccc
Confidence                            011111  122244557899999999999999999999987 9999999864 221        


Q ss_pred             ---eeEEeecc---------------------------------Cccc--c-----------------c---ccccCCCc
Q 014644          282 ---VATFKIHE---------------------------------HLRP--K-----------------L---CDLYNNDS  303 (421)
Q Consensus       282 ---~~~~~~~~---------------------------------~~~~--~-----------------~---~~~~~~~~  303 (421)
                         +..+..++                                 ++..  .                 +   ..+...+.
T Consensus       363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~  442 (603)
T KOG0318|consen  363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI  442 (603)
T ss_pred             cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence               11111111                                 0000  0                 0   00111223


Q ss_pred             ceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          304 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       304 ~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      .|...+++++|++..++.|++||.|+||.+..+. .....+..|.+++..++++|+       +.+||+|...++ -+|+
T Consensus       443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd-------~~yla~~Da~rkvv~yd  515 (603)
T KOG0318|consen  443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD-------GAYLAAGDASRKVVLYD  515 (603)
T ss_pred             ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC-------CcEEEEeccCCcEEEEE
Confidence            3335678999999999999999999999999764 335578899999999999999       559999999999 9994


Q ss_pred             CCC--c-cccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          382 SSG--H-HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       382 ~~~--~-~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ...  . .....-|...|.+++|+|+..++|+|+ +.+++||+.
T Consensus       516 ~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  516 VASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             cccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            332  2 222234889999999999999999999 677999963

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6e-37  Score=241.41  Aligned_cols=290  Identities=15%  Similarity=0.184  Sum_probs=231.7

Q ss_pred             CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644           47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  126 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  126 (421)
                      .-+|++++.|.+||+|...+|..  .....+++           ..+.++...++...++.+..   ..+|++|+.+...
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C--~rTiqh~d-----------sqVNrLeiTpdk~~LAaa~~---qhvRlyD~~S~np   73 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGIC--SRTIQHPD-----------SQVNRLEITPDKKDLAAAGN---QHVRLYDLNSNNP   73 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeE--EEEEecCc-----------cceeeEEEcCCcchhhhccC---CeeEEEEccCCCC
Confidence            45899999999999999999872  22223333           46667777777777776553   4689999987643


Q ss_pred             eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          127 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                       .++.++ .+|++.|.++.|..+|+.+++| +||+++|||++ ...+.+.        ..|..+|.++..+|+. ..|++
T Consensus        74 -~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-~~~~qR~--------~~~~spVn~vvlhpnQ-teLis  141 (311)
T KOG0315|consen   74 -NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-SLSCQRN--------YQHNSPVNTVVLHPNQ-TELIS  141 (311)
T ss_pred             -CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEecc-Ccccchh--------ccCCCCcceEEecCCc-ceEEe
Confidence             378888 9999999999999999999999 99999999999 4444333        4577999999999998 89999


Q ss_pred             EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC-----C
Q 014644          206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----S  279 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~-----~  279 (421)
                      +..+|.|++||+.......    .+            .++....|.++...|||.+++++.. |..++|++-..     -
T Consensus       142 ~dqsg~irvWDl~~~~c~~----~l------------iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l  205 (311)
T KOG0315|consen  142 GDQSGNIRVWDLGENSCTH----EL------------IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL  205 (311)
T ss_pred             ecCCCcEEEEEccCCcccc----cc------------CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence            9999999999999864321    11            1112468999999999999999987 99999998641     2


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  359 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (421)
                      +++.+++.|..-+               ..+-+|||+++|+++|.|.+++||+.++.-.....+++|...+...+|+.+ 
T Consensus       206 ~P~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d-  269 (311)
T KOG0315|consen  206 EPVHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD-  269 (311)
T ss_pred             eEhhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC-
Confidence            4566677777654               789999999999999999999999999875667889999999999999999 


Q ss_pred             cccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEc
Q 014644          360 RARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH  402 (421)
Q Consensus       360 ~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~s  402 (421)
                       +     .+|++|+.|.. ++|  ..++......+|.....+++.+
T Consensus       270 -g-----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  270 -G-----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             -c-----cEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence             4     49999999999 999  4445555556676666565543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-38  Score=267.29  Aligned_cols=277  Identities=19%  Similarity=0.269  Sum_probs=233.9

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      -+-.|+.|.|  .|+|+.|++|+..|.+.||+......+                                         
T Consensus        95 vkc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFE-----------------------------------------  131 (464)
T KOG0284|consen   95 VKCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFE-----------------------------------------  131 (464)
T ss_pred             cccceeeEEE--cCCCceeEeecccccEEEecCceeeHH-----------------------------------------
Confidence            3558999999  799999999999999999997442211                                         


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                          ++.+.|...|+++.|++++.++++| .+|.|++|+.+  ..-++.+      ...|...|
T Consensus       132 --------------------tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk~~------~ahh~eaI  183 (464)
T KOG0284|consen  132 --------------------TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVKII------QAHHAEAI  183 (464)
T ss_pred             --------------------HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhHHh------hHhhhhhh
Confidence                                1127899999999999999999999 99999999987  3333332      13355899


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      ++++|+|+. ..+++++.||+|+|||....+..    +.+.+             |.-.|.+++|+|...+|++++. ..
T Consensus       184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             heeccCCCC-ceeEEecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCce
Confidence            999999988 99999999999999999876533    44455             4788999999999999999986 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  349 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  349 (421)
                      |++||.++ +.++.++.+|...+               ..+.|+|++.+|+++|.|..++++|+++- ....++++|...
T Consensus       246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkd  308 (464)
T KOG0284|consen  246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKD  308 (464)
T ss_pred             eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhh
Confidence            99999997 99999999999866               89999999999999999999999999965 678899999999


Q ss_pred             ccceeeecCCcccccccceeeeecccCc-ccCCC--C-CccccccccccCeEEEEEccCCCeEEEecC-CceEEEe
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--S-GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY  420 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~-~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~i~~  420 (421)
                      +.++.|+|-..      ++|.+|+.||. ..|..  . ........|...|++++|||-|.+||+|+. ..+++|.
T Consensus       309 v~~~~WhP~~~------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  309 VTSLTWHPLNE------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             heeeccccccc------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            99999999843      47999999999 88832  2 333344578999999999999999999994 5588885

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-36  Score=273.37  Aligned_cols=266  Identities=16%  Similarity=0.232  Sum_probs=217.8

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...++|..|  ++++.+||.|-.|-.|++|.+...+++++.....-..                        +-.++.  
T Consensus       378 ~~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~------------------------~d~~sa--  429 (707)
T KOG0263|consen  378 YQGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSN------------------------IDTESA--  429 (707)
T ss_pred             CCcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhcc------------------------cccccc--
Confidence            457899999  7889999999999999999998765444432111000                        000000  


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      +....+.|....   ...+.+ .||.++|..+.|+|+.++|+++ .|+++|+|.+.+ ..++-..       .+|..+|+
T Consensus       430 d~~~~~~D~~~~---~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y-------~GH~~PVw  497 (707)
T KOG0263|consen  430 DVDVDMLDDDSS---GTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIY-------KGHLAPVW  497 (707)
T ss_pred             chhhhhccccCC---ceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEe-------cCCCccee
Confidence            001222222222   344445 7999999999999999999999 999999999994 4444333       79999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      .+.|+|.| .++|+++.|++.++|.......    .+++.+|             .+.|.++.|+|+..|+++|+. .++
T Consensus       498 dV~F~P~G-yYFatas~D~tArLWs~d~~~P----lRifagh-------------lsDV~cv~FHPNs~Y~aTGSsD~tV  559 (707)
T KOG0263|consen  498 DVQFAPRG-YYFATASHDQTARLWSTDHNKP----LRIFAGH-------------LSDVDCVSFHPNSNYVATGSSDRTV  559 (707)
T ss_pred             eEEecCCc-eEEEecCCCceeeeeecccCCc----hhhhccc-------------ccccceEEECCcccccccCCCCceE
Confidence            99999999 9999999999999999887443    3777665             889999999999999999976 999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      ++||..+ +..++.|.+|..++               .+++|||+|++|++|++||.|.+||+.++ .+...+.+|++.+
T Consensus       560 RlWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti  622 (707)
T KOG0263|consen  560 RLWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTI  622 (707)
T ss_pred             EEEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCC-cchhhhhcccCce
Confidence            9999997 99999999999976               89999999999999999999999999987 7888999999999


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccC
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .++.|+.+       +..|++|+.|.. ++|
T Consensus       623 ~SlsFS~d-------g~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  623 YSLSFSRD-------GNVLASGGADNSVRLW  646 (707)
T ss_pred             eEEEEecC-------CCEEEecCCCCeEEEE
Confidence            99999988       449999999999 999

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=230.84  Aligned_cols=283  Identities=16%  Similarity=0.231  Sum_probs=223.1

Q ss_pred             ccccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           28 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      +..+|+++|..++|  +|. |..||+++.|+.||+|+...+..                                     
T Consensus         9 ~~~gh~~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~~~s-------------------------------------   49 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAW--HPGKGVILASCGTDKAVRIWSTSSGDS-------------------------------------   49 (312)
T ss_pred             eecCCCCcEEEEEe--ccCCceEEEeecCCceEEEEecCCCCc-------------------------------------
Confidence            34589999999999  676 88999999999999999875320                                     


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMD  184 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~  184 (421)
                                  |        .|...+..+|+..|++++|+|.|++|+++ .|.++.||.-.... +++.       +++
T Consensus        50 ------------~--------~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~-------~lE  102 (312)
T KOG0645|consen   50 ------------W--------TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA-------TLE  102 (312)
T ss_pred             ------------E--------EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe-------eee
Confidence                        0        34444447899999999999999999999 99999999876221 3333       459


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      +|...|.|++|+++| ++||+++.|+.|-||.+..+... ....++             ..|...|..+.|+|...+|++
T Consensus       103 GHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-ec~aVL-------------~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen  103 GHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-ECIAVL-------------QEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             ccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-EEEeee-------------ccccccccEEEEcCCcceeEE
Confidence            999999999999999 99999999999999998854321 112333             445889999999999999999


Q ss_pred             ecC-CeEEEEECCC--CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          265 RDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       265 ~~~-~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      ++. .+|++|+-..  +-.+++++.+|...+               ++++|+|.|..|+++++|++++||...+.     
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----  227 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----  227 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCcceEeeeeccC-----
Confidence            987 9999998652  246788898888755               89999999999999999999999986533     


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC----CCccc-----cccccccCeEEEEEccC-CCeEEE
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS----SGHHE-----LSYNLSSKLLHLAWHPT-TNLIAC  410 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~----~~~~~-----~~~~~~~~v~~~~~spd-~~~la~  410 (421)
                      .-..|..++..+.+...         .||+++.|+. +++..    .+...     .-..|...|++++|.|. .++|++
T Consensus       228 ~~~~~sr~~Y~v~W~~~---------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s  298 (312)
T KOG0645|consen  228 LSGMHSRALYDVPWDNG---------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS  298 (312)
T ss_pred             cchhcccceEeeeeccc---------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceee
Confidence            22345667777777732         7999999999 99921    22222     22367889999999995 778888


Q ss_pred             ecCCc-eEEEe
Q 014644          411 ANGNS-LFFHY  420 (421)
Q Consensus       411 ~~~~~-~~i~~  420 (421)
                      +++|+ +.+|.
T Consensus       299 ~~DDG~v~~W~  309 (312)
T KOG0645|consen  299 GGDDGIVNFWE  309 (312)
T ss_pred             cCCCceEEEEE
Confidence            88655 88885

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.8e-35  Score=236.72  Aligned_cols=279  Identities=16%  Similarity=0.225  Sum_probs=232.3

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..+|++.|+.++|  +|+|.+||+|+.|..|.||++...+                                        
T Consensus        43 l~gh~geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdc----------------------------------------   80 (338)
T KOG0265|consen   43 LPGHKGEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDC----------------------------------------   80 (338)
T ss_pred             cCCCcceEEEEEE--CCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence            3589999999999  7899999999999999999976643                                        


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                         +...++ ++|++.|..+.|.+|+..|+++ .|.+|+.||++ .++..+       ++.+|.
T Consensus        81 -------------------eN~~~l-kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~r-------k~k~h~  132 (338)
T KOG0265|consen   81 -------------------ENFWVL-KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIR-------KHKGHT  132 (338)
T ss_pred             -------------------cceeee-ccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeee-------hhcccc
Confidence                               222334 7999999999999999999998 99999999999 455443       348899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      .-|.++.-+.-|+.++.+++.|+++++||+|+....    +++..              ...++++.|..++..+.+|.-
T Consensus       133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~~--------------kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFEN--------------KYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             ceeeecCccccCCeEEEecCCCceEEEEeecccchh----hcccc--------------ceeEEEEEecccccceeeccc
Confidence            999999866667778889999999999999986654    55544              567899999999999998865


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC---CCceeEE
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGITV  343 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~  343 (421)
                       +.|++||++. +.....+.+|...+               +.+..+|+|.++.+-+.|.++++||++..   ++.+..+
T Consensus       195 dn~ikvWd~r~-~d~~~~lsGh~DtI---------------t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  195 DNDIKVWDLRK-NDGLYTLSGHADTI---------------TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             cCceeeecccc-CcceEEeecccCce---------------eeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence             9999999996 89999999999876               89999999999999999999999999864   3446777


Q ss_pred             ecCCCCc----cceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEecC-Cc
Q 014644          344 EAGKNEN----RKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANG-NS  415 (421)
Q Consensus       344 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~  415 (421)
                      ++|....    -...|+|+       ...+..|+.|+. .+|+.  -..+..+-+|...|.+++|+|..++|.+++. ..
T Consensus       259 ~g~~hnfeknlL~cswsp~-------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPN-------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             ecchhhhhhhcceeeccCC-------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence            7775432    34456666       347889999999 99943  3567788899999999999999999998884 45


Q ss_pred             eEE
Q 014644          416 LFF  418 (421)
Q Consensus       416 ~~i  418 (421)
                      ||+
T Consensus       332 i~l  334 (338)
T KOG0265|consen  332 IYL  334 (338)
T ss_pred             eEe
Confidence            664

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8e-35  Score=248.84  Aligned_cols=332  Identities=16%  Similarity=0.203  Sum_probs=263.7

Q ss_pred             ccccccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           28 KSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      +-+.|+.+|.+.+|  +|-.. ++++++.|-+.++|++....  .......+|.- -.+..-.+.++.+.+++++.++.+
T Consensus       173 kvl~~~~~V~~~~W--nP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~-~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  173 KVLRHESEVFICAW--NPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI-REGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             eeccCCCceEEEec--CchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh-hhhcccCCccCCcceEEecCCCCe
Confidence            34569999999999  56544 89999999999999987522  11111111110 011223345678999999999999


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      +++|..  ++.+++|+...    ..+.++ ..|.++|.+|.|+.+|++|+++ .|+++.+||.. .+...+.+       
T Consensus       250 LatG~~--~G~~riw~~~G----~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~f-------  314 (524)
T KOG0273|consen  250 LATGSE--DGEARIWNKDG----NLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQF-------  314 (524)
T ss_pred             EEEeec--CcEEEEEecCc----hhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEee-------
Confidence            999998  78899998765    556677 8999999999999999999999 99999999998 45555443       


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      .-|..+-..+.|-.+  ..+++++.|+.|+++.+...++.    ..+.+             |.++|.++.|.|.|.+|+
T Consensus       315 ~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t~~G-------------H~g~V~alk~n~tg~LLa  375 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KTFIG-------------HHGEVNALKWNPTGSLLA  375 (524)
T ss_pred             eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc----eeeec-------------ccCceEEEEECCCCceEE
Confidence            557777678888876  57999999999999998875543    55555             489999999999999999


Q ss_pred             EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC---------CEEEEeeCCCeEEEEec
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSH  333 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---------~~l~~~s~dg~i~iwd~  333 (421)
                      ++++ ++++||.+.. ......+.+|...+               ..+.|+|+|         ..+++++.|++|++||+
T Consensus       376 S~SdD~TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  376 SCSDDGTLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             EecCCCeeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            9987 9999999975 77788888888765               678888854         57899999999999999


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEe
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACA  411 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~  411 (421)
                      ..+ .....+..|..+|.+++|+|+  ++     ++|+|+.||. .||. ....+.....-...|..++|+.+|+.|.++
T Consensus       440 ~~g-v~i~~f~kH~~pVysvafS~~--g~-----ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  440 ESG-VPIHTLMKHQEPVYSVAFSPN--GR-----YLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             cCC-ceeEeeccCCCceEEEEecCC--Cc-----EEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEE
Confidence            988 778899999999999999999  44     9999999999 9993 334444444556679999999999887755


Q ss_pred             c-CCceEEEe
Q 014644          412 N-GNSLFFHY  420 (421)
Q Consensus       412 ~-~~~~~i~~  420 (421)
                      . ++.+++.+
T Consensus       512 ~sd~~vcvld  521 (524)
T KOG0273|consen  512 ASDGSVCVLD  521 (524)
T ss_pred             ecCCCceEEE
Confidence            5 55565543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=264.31  Aligned_cols=343  Identities=15%  Similarity=0.149  Sum_probs=267.1

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .|+.+|..++|  +|.+.+|++|+.|+.|+|||+..+. ...+..  +++.|+++.|++....          ..+..|.
T Consensus       103 ~He~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG--~gGvVssl~F~~~~~~----------~lL~sg~  168 (775)
T KOG0319|consen  103 IHEAPVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG--HGGVVSSLLFHPHWNR----------WLLASGA  168 (775)
T ss_pred             ccCCCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC--CCceEEEEEeCCccch----------hheeecC
Confidence            49999999999  7889999999999999999999877 333333  5666665555543222          1233332


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCC--------
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP--------  180 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~--------  180 (421)
                        .+..+++|+.....  .|+.++ ..|...|++++|++|+..++++ .|..+.+||+.. .+..+++++.+        
T Consensus       169 --~D~~v~vwnl~~~~--tcl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~vv~l  242 (775)
T KOG0319|consen  169 --TDGTVRVWNLNDKR--TCLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESVVRL  242 (775)
T ss_pred             --CCceEEEEEcccCc--hHHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhh-hhhhheechhhheeeEEEe
Confidence              36789999998653  367777 8999999999999999999987 999999999852 11111110000        


Q ss_pred             --------------------------------------------------------------------------------
Q 014644          181 --------------------------------------------------------------------------------  180 (421)
Q Consensus       181 --------------------------------------------------------------------------------  180 (421)
                                                                                                      
T Consensus       243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~  322 (775)
T KOG0319|consen  243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY  322 (775)
T ss_pred             chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence                                                                                            


Q ss_pred             ------------------------------------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc-
Q 014644          181 ------------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-  223 (421)
Q Consensus       181 ------------------------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~-  223 (421)
                                                          .-+.+|++.|.++....+| -+|++++.|.++++|.+.++... 
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~  401 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS  401 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh
Confidence                                                2246888899999866666 79999999999999988543221 


Q ss_pred             -------------------------------ccchhhhccccccCC--------CcccccccccceeEEEEcCCCCEEEE
Q 014644          224 -------------------------------DHSARILRDAAESHG--------SKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       224 -------------------------------~~~~~~~~~h~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                                                     +..++.|.. .....        .+.....|...|++++++|+.++||+
T Consensus       402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhcccccccceeeecccCccEEEEecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence                                           111222322 11000        01123568889999999999999999


Q ss_pred             ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      |+. .+.+||++.. ......+.+|...+               +++.|+|..+.++|+|.|++|+||.+.+. ...+++
T Consensus       481 ~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~  543 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTF  543 (775)
T ss_pred             cccccceeeecccC-ceEEEEeeCCccce---------------EEEEeccccceeEeccCCceEEEEEeccc-eeeeee
Confidence            987 9999999984 88999999999865               89999999999999999999999999998 789999


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEE
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFH  419 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~  419 (421)
                      .||...|....|-.+  +.     .|++++.||. ++|  +..+....+-.|...|+.++-+|...++++|+.| .+.+|
T Consensus       544 eGH~~aVlra~F~~~--~~-----qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  544 EGHTSAVLRASFIRN--GK-----QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             cCccceeEeeeeeeC--Cc-----EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            999999999999877  44     8999999999 999  6777888888999999999999999999999855 57666

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=245.81  Aligned_cols=393  Identities=43%  Similarity=0.675  Sum_probs=289.4

Q ss_pred             CCCCceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccc
Q 014644            6 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN   85 (421)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~   85 (421)
                      ..+-||.|.++||+|+++|+|+++++.+++|+.|+|+...+...++.++.|++|++|.+....++.....+..+.+    
T Consensus        58 s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----  133 (460)
T COG5170          58 SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----  133 (460)
T ss_pred             ccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc----
Confidence            4567899999999999999999999999999999998655567899999999999999988765554443333211    


Q ss_pred             ccccccc-eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEE
Q 014644           86 TLLAEKN-FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW  164 (421)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lw  164 (421)
                       +.+.++ +.+.              .....+++-.-.......+.+.+...|.-.|+++.|+.|.+.+++++|-.|.+|
T Consensus       134 -~~~~~g~~~s~--------------~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLW  198 (460)
T COG5170         134 -HSPMGGPLTST--------------KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLW  198 (460)
T ss_pred             -ccccCCCcCCH--------------HHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeec
Confidence             111110 0000              000122222222222225556666889999999999999999999999999999


Q ss_pred             eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccc
Q 014644          165 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  244 (421)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (421)
                      +++.....+.++++||..+..-+.-|++..|+|..++.+...+..|+|++-|+|+..+++...++++. ...+....++.
T Consensus       199 nl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~  277 (460)
T COG5170         199 NLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFE  277 (460)
T ss_pred             cccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHH
Confidence            99988999999999999998888999999999998888999999999999999999988888888887 67777888888


Q ss_pred             ccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       245 ~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      +....|..+.|+++|++|++.+.-+++|||.+....+++++..|......++..|++|+||+-+.+.|+.|.+.+++|+.
T Consensus       278 eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         278 EIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             HHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence            88899999999999999999988999999999989999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCCc----eeEEecCCCCccc---eeeecCCccccc-ccceeeeecccCcccCCCCCccccccccccCe
Q 014644          325 SNLLRIFSHGVGSAG----GITVEAGKNENRK---PILQAAPRARRS-SLSNLTRGLYRQAHENSSSGHHELSYNLSSKL  396 (421)
Q Consensus       325 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v  396 (421)
                      .+..-|+-..+.+..    +..+..|..+-..   ..-...+..... +--...+.+.+|.-.-   ..-...+++...|
T Consensus       358 ~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~---~eD~d~ld~~k~i  434 (460)
T COG5170         358 SNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA---CEDPDNLDLLKKI  434 (460)
T ss_pred             ccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee---ccCcchhHHHHHH
Confidence            998888875543211    1222222211111   000000000000 0000000011110000   0001122345667


Q ss_pred             EEEEEccCCCeEEEecCCceEEEeC
Q 014644          397 LHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       397 ~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      ...+|||-...+|++..+++++|.+
T Consensus       435 lh~sWhp~e~svaiaatnnlfvfs~  459 (460)
T COG5170         435 LHRSWHPFEDSVAIAATNNLFVFSK  459 (460)
T ss_pred             HhhccCCcccceeeeecCceEEEec
Confidence            8889999999999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-34  Score=227.86  Aligned_cols=250  Identities=16%  Similarity=0.215  Sum_probs=196.1

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||+-.|+.+..  ++++++.++++.|+++|+||+.+++..+.... |..            .+++.+++++.+.+.+|+
T Consensus        60 ~GHsH~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~------------dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   60 TGHSHFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTK------------DVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             eccceEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEe-cCC------------ceEEEEecCCCceeecCC
Confidence            379999999999  79999999999999999999999874433332 333            456666667777777776


Q ss_pred             cccccceeEEeecccceeeeeeeecC-CCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      -  +.++++|+.-..    |..+... .|.+.|.|+.|+|+  ..+|+++ .|++|++||++ +-+...       .+.+
T Consensus       125 r--DkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~g  190 (315)
T KOG0279|consen  125 R--DKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIG  190 (315)
T ss_pred             C--cceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------cccc
Confidence            6  668999998764    4444412 23889999999997  7788988 99999999998 555443       3488


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |++.++.++++||| .++++|+.||.+.+||++.++.+    ..++.              ...|.+++|+|+...|+.+
T Consensus       191 h~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~a  251 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAA  251 (315)
T ss_pred             ccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeec
Confidence            99999999999999 99999999999999999998754    44444              7899999999999888888


Q ss_pred             cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      .+..|+|||+.+ +.++..++.......    ....+.+.  .+++|++||+.|++|-.|+.|++|.+.
T Consensus       252 t~~sIkIwdl~~-~~~v~~l~~d~~g~s----~~~~~~~c--lslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  252 TATSIKIWDLES-KAVVEELKLDGIGPS----SKAGDPIC--LSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCceEEEeccc-hhhhhhccccccccc----cccCCcEE--EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            877799999986 777666654322210    00011111  689999999999999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-33  Score=251.22  Aligned_cols=318  Identities=14%  Similarity=0.162  Sum_probs=255.9

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .+|++.+|  ++...+|++|-..|...|+++.+.. ++.+...              +..|....++..+.+++-|+.. 
T Consensus       266 ~kvtaa~f--H~~t~~lvvgFssG~f~LyelP~f~lih~LSis--------------~~~I~t~~~N~tGDWiA~g~~k-  328 (893)
T KOG0291|consen  266 SKVTAAAF--HKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS--------------DQKILTVSFNSTGDWIAFGCSK-  328 (893)
T ss_pred             cceeeeec--cCCceEEEEEecCCeeEEEecCCceEEEEeecc--------------cceeeEEEecccCCEEEEcCCc-
Confidence            78999999  7889999999999999999998877 3333221              2467778888888888888764 


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      .+.+-+|+....   .-+... ++|...+.+++++|||+++|+| +||.|+|||.. .+-|+-++       ..|+..|+
T Consensus       329 lgQLlVweWqsE---sYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~vTF-------teHts~Vt  396 (893)
T KOG0291|consen  329 LGQLLVWEWQSE---SYVLKQ-QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFVTF-------TEHTSGVT  396 (893)
T ss_pred             cceEEEEEeecc---ceeeec-cccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEEEe-------ccCCCceE
Confidence            456778877654   445555 8999999999999999999999 99999999998 67777655       88999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN  269 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~  269 (421)
                      .+.|+..+ +.+++++.||+|+.||+...+..    +.+..    |.        .-...+++..|.|.++.+|+.  =.
T Consensus       397 ~v~f~~~g-~~llssSLDGtVRAwDlkRYrNf----RTft~----P~--------p~QfscvavD~sGelV~AG~~d~F~  459 (893)
T KOG0291|consen  397 AVQFTARG-NVLLSSSLDGTVRAWDLKRYRNF----RTFTS----PE--------PIQFSCVAVDPSGELVCAGAQDSFE  459 (893)
T ss_pred             EEEEEecC-CEEEEeecCCeEEeeeeccccee----eeecC----CC--------ceeeeEEEEcCCCCEEEeeccceEE
Confidence            99999999 99999999999999999876543    44443    11        234678899999999998864  68


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  349 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  349 (421)
                      |.+|++++ |+.+..+.+|++++               .+++|+|.+..|+++|.|.+|++||+-.......++ .+...
T Consensus       460 IfvWS~qT-GqllDiLsGHEgPV---------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sd  522 (893)
T KOG0291|consen  460 IFVWSVQT-GQLLDILSGHEGPV---------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSD  522 (893)
T ss_pred             EEEEEeec-CeeeehhcCCCCcc---------------eeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccc
Confidence            99999998 99999999999987               789999999999999999999999997653333333 45677


Q ss_pred             ccceeeecCCcccccccceeeeecccCc-ccCCCCCccc----------------------cccccccCeEEEEEccCCC
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHE----------------------LSYNLSSKLLHLAWHPTTN  406 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~----------------------~~~~~~~~v~~~~~spd~~  406 (421)
                      +..+.|.|+  |+     -||...-||. .+|+..+...                      ....-....+.+++++||.
T Consensus       523 vl~vsfrPd--G~-----elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~  595 (893)
T KOG0291|consen  523 VLAVSFRPD--GK-----ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK  595 (893)
T ss_pred             eeEEEEcCC--CC-----eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence            889999999  44     8999999999 9993321110                      0001235788999999999


Q ss_pred             eEEEec-CCceEEEeC
Q 014644          407 LIACAN-GNSLFFHYA  421 (421)
Q Consensus       407 ~la~~~-~~~~~i~~~  421 (421)
                      .|++|+ .+.+.||++
T Consensus       596 ~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  596 CILAGGESNSICIYDV  611 (893)
T ss_pred             EEEecCCcccEEEEEC
Confidence            998888 677999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-34  Score=263.40  Aligned_cols=284  Identities=21%  Similarity=0.306  Sum_probs=232.4

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      |...|.++.|  +++|+.+++++.|+.+++|+....+.                                          
T Consensus       158 ~~~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------------  193 (456)
T KOG0266|consen  158 ECPSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------------------------------------------  193 (456)
T ss_pred             ccCceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------------------------------------------
Confidence            3788999999  79999999999999999999855331                                          


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                      ..++.+ .+|...|++++|+|++++++++ .|++|++||+......++++       .+|...|
T Consensus       194 ----------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-------~gH~~~v  249 (456)
T KOG0266|consen  194 ----------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-------KGHSTYV  249 (456)
T ss_pred             ----------------hhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-------cCCCCce
Confidence                            012223 6899999999999999999999 99999999996455777765       8999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      ++++|+|++ +++++|+.|++|++||+++++..    +.+..             |...|++++|++++.+|++++. +.
T Consensus       250 ~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~~-------------hs~~is~~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  250 TSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLKG-------------HSDGISGLAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             EEEEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeeec-------------cCCceEEEEECCCCCEEEEcCCCcc
Confidence            999999999 99999999999999999996654    55555             4889999999999999999975 99


Q ss_pred             EEEEECCCCCc--ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          270 LKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       270 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      |++||+.+ +.  ++..+..+.... .            +..++|+|+++++++++.|+.+++||+..+ .....+.+|.
T Consensus       312 i~vwd~~~-~~~~~~~~~~~~~~~~-~------------~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~  376 (456)
T KOG0266|consen  312 IRVWDLET-GSKLCLKLLSGAENSA-P------------VTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHS  376 (456)
T ss_pred             EEEEECCC-CceeeeecccCCCCCC-c------------eeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccC
Confidence            99999987 66  456666665541 1            278999999999999999999999999987 6677788887


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccccc-ccCeEEEEEccCCCeEEEec---CCceEEEe
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY  420 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~-~~~v~~~~~spd~~~la~~~---~~~~~i~~  420 (421)
                      ..+.+. +++..   ......+.+|+.|+. ++|  ..++.+....+| ...+..++|+|..+++++++   +..+.+|.
T Consensus       377 ~~~~~~-~~~~~---~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  377 NLVRCI-FSPTL---STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CcceeE-ecccc---cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            764222 22211   111448999999999 999  345666777788 88999999999999999998   55688885

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.9e-34  Score=251.04  Aligned_cols=321  Identities=15%  Similarity=0.163  Sum_probs=250.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .|+++|.+|.|  +|....++++-..|.|.||+.++..+. .+...              +..++++.+-....|+..|+
T Consensus        11 ~rSdRVKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------------~~PvRa~kfiaRknWiv~Gs   74 (794)
T KOG0276|consen   11 SRSDRVKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------------EVPVRAAKFIARKNWIVTGS   74 (794)
T ss_pred             ccCCceeeeec--CCCCceEEEeeecCeeEEEecccceeeeeeeec--------------ccchhhheeeeccceEEEec
Confidence            47899999999  899999999999999999999987632 22221              23566666767777888887


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      -  +..+++++..+.   +.++.| .+|.+-|++++.+|...+++++ +|-+|++||.+..-.+.+++       ++|..
T Consensus        75 D--D~~IrVfnynt~---ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-------eGH~H  141 (794)
T KOG0276|consen   75 D--DMQIRVFNYNTG---EKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-------EGHEH  141 (794)
T ss_pred             C--CceEEEEecccc---eeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-------cCcce
Confidence            5  568999999998   999999 9999999999999999999999 99999999999555555554       99999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEec
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRD  266 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~  266 (421)
                      .|.+++|+|..++.+++++.|++|++|.+.+....    .+++             +|...|+++.+-+-|  .+|++|+
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~-------------gHekGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLE-------------GHEKGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeee-------------ccccCcceEEeccCCCcceEEecC
Confidence            99999999998899999999999999999875432    3444             458899999998844  5999998


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      | .+++|||..+ ..+++++.+|...+               ..++|+|.-..+++|++||+++||+..+- .+..++..
T Consensus       205 DD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~  267 (794)
T KOG0276|consen  205 DDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY  267 (794)
T ss_pred             CCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc
Confidence            7 9999999998 99999999999976               78899999999999999999999998876 55555655


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccC-------------------cccCCC-CCccc---cccc-----------
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQ-------------------AHENSS-SGHHE---LSYN-----------  391 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~-------------------~~iw~~-~~~~~---~~~~-----------  391 (421)
                      .-..+.+++..+.       ...++.|.+.|                   +.+|.. ++...   ...+           
T Consensus       268 gleRvW~I~~~k~-------~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL  340 (794)
T KOG0276|consen  268 GLERVWCIAAHKG-------DGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERL  340 (794)
T ss_pred             CCceEEEEeecCC-------CCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccc
Confidence            5566666655443       11344444443                   244511 11000   0000           


Q ss_pred             ---------cccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          392 ---------LSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       392 ---------~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                               ..--...++.+|+|+.+++++++...||.+
T Consensus       341 ~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa  379 (794)
T KOG0276|consen  341 PLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA  379 (794)
T ss_pred             cchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence                     011123578999999999999999888854

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.7e-33  Score=249.75  Aligned_cols=335  Identities=14%  Similarity=0.186  Sum_probs=246.7

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      .++|-+.|.++.|  +.|.++|++||.|-++|||.++..+ +.......|.+.|...            -+..+...+.+
T Consensus       141 ~~g~fddi~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvac------------fF~~~~~~l~t  206 (893)
T KOG0291|consen  141 YLGHFDDITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVAC------------FFGANSLDLYT  206 (893)
T ss_pred             ecCCccceeEEEe--ccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEE------------EeccCcceEEE
Confidence            3589999999999  7899999999999999999998766 3344444455544422            22222222222


Q ss_pred             cccccccceeEEeeccc-----------------------c-------eeeeeeeecCCCCcceEEEeecCCCCEEEEE-
Q 014644          108 LEWTENMATKIANVGNS-----------------------V-------HARCQKVYPHAHDFNINSISNNSDCETFVSA-  156 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~-----------------------~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-  156 (421)
                      .+.  ++.+.+|.....                       .       -....+.+.......|++.+|++..+.|++| 
T Consensus       207 vsk--dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF  284 (893)
T KOG0291|consen  207 VSK--DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF  284 (893)
T ss_pred             Eec--CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence            211  333444443300                       0       0011122223344667777777777777777 


Q ss_pred             cCCcEEEEeCCCCceeeeeeecCC------------------------------------CCCCccCCCeeEEEEecCCC
Q 014644          157 DDLRINLWNLEISDQCFNIVDMKP------------------------------------SNMDDLTEVITSAEFHPIYC  200 (421)
Q Consensus       157 ~d~~i~lwd~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~v~~~~~~p~~~  200 (421)
                      ..|...+|.+. .-.++..+.+..                                    .+..+|...+.+++++||| 
T Consensus       285 ssG~f~LyelP-~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-  362 (893)
T KOG0291|consen  285 SSGEFGLYELP-DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-  362 (893)
T ss_pred             cCCeeEEEecC-CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC-
Confidence            77776677664 222222221110                                    2347899999999999999 


Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      +++++|+.||.|++||...+-+.    .+|..             |.+.|+.+.|+..|+.+++.+- |+|+.||+.. .
T Consensus       363 q~iaTG~eDgKVKvWn~~SgfC~----vTFte-------------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y  424 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSGFCF----VTFTE-------------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y  424 (893)
T ss_pred             cEEEeccCCCcEEEEeccCceEE----EEecc-------------CCCceEEEEEEecCCEEEEeecCCeEEeeeecc-c
Confidence            99999999999999999987654    45555             4899999999999999999875 9999999986 7


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC-eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      ...+++..+....              ..+++..|.|..+++|+.|. .|++|++++| ++.-.+.||.+||..+.|+|.
T Consensus       425 rNfRTft~P~p~Q--------------fscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQ--------------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             ceeeeecCCCcee--------------eeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccc
Confidence            8888887665432              15789999999999999887 6999999998 889999999999999999999


Q ss_pred             CcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          359 PRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       359 ~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                             +..|++|+-|.+ ++|+.-  ....+.+.+...++.++|+|||+.||++. ++.|.||++
T Consensus       490 -------~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  490 -------GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             -------cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence                   459999999999 999332  22445566778899999999999999999 667999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-34  Score=222.00  Aligned_cols=277  Identities=20%  Similarity=0.254  Sum_probs=229.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|+++|++++|  +.+|++.+++++|++||+|+...+                                           
T Consensus        15 ~~qgaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg-------------------------------------------   49 (307)
T KOG0316|consen   15 CAQGAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRG-------------------------------------------   49 (307)
T ss_pred             ccccceEEEEE--ccCCCEEEEcCCCceEEeeccccc-------------------------------------------
Confidence            57899999999  899999999999999999997664                                           


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                       .+++++ .+|..+|..++.+.|...++++ .|+.+.+||++ .++..+.       +.+|.+.
T Consensus        50 -----------------~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv~Rr-------~rgH~aq  103 (307)
T KOG0316|consen   50 -----------------ALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKVDRR-------FRGHLAQ  103 (307)
T ss_pred             -----------------ceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCeeeee-------cccccce
Confidence                             566777 8999999999999999999998 99999999999 5665553       4899999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |..+.|+.+. ..+++|+.|.++++||.++...  ++++++..             ....|.++...  +..|++|+- |
T Consensus       104 VNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen  104 VNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             eeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeEEEec--ccEEEeeccCC
Confidence            9999999998 9999999999999999998642  23344443             36788888887  667888764 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      +++.||++. ++...-+.+|.-                 ++++|++|++..+.++-|+++++.|-.++ ++...+.+|.+
T Consensus       166 tvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn  226 (307)
T KOG0316|consen  166 TVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKN  226 (307)
T ss_pred             cEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeecccchh-HHHHHhccccc
Confidence            999999996 777666655543                 79999999999999999999999999988 88889999998


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCC-CCCccc-cccccccC-eEEEEEccCCCeEEEecCCceEEEe
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHE-LSYNLSSK-LLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~-~~~~~~~~-v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .-..+..+..+.     ...+++|+.||. .+|+ .++.+. ....+... |.++++||.-..|.++...+.++|.
T Consensus       227 ~eykldc~l~qs-----dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  227 MEYKLDCCLNQS-----DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             ceeeeeeeeccc-----ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence            877776665533     348999999999 9993 333333 33344455 7999999999999999988888885

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=238.91  Aligned_cols=280  Identities=14%  Similarity=0.204  Sum_probs=241.2

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..+|..+|+.+.|  +|+-..+++++.|.+|++||..++++                                       
T Consensus       104 l~g~r~~vt~v~~--hp~~~~v~~as~d~tikv~D~~tg~~---------------------------------------  142 (406)
T KOG0295|consen  104 LAGHRSSVTRVIF--HPSEALVVSASEDATIKVFDTETGEL---------------------------------------  142 (406)
T ss_pred             hhccccceeeeee--ccCceEEEEecCCceEEEEEccchhh---------------------------------------
Confidence            4579999999999  79999999999999999999998752                                       


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                           .+.+ +||.+.|.+++|+..|++|+++ .|-.+++||..+..++.+.       +.+|.
T Consensus       143 ---------------------e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-------~~gh~  193 (406)
T KOG0295|consen  143 ---------------------ERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-------LIGHE  193 (406)
T ss_pred             ---------------------hhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-------hcCcc
Confidence                                 2334 8999999999999999999999 8988999999844455543       47899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..|.+++|-|.| .+|++++.|.+|+.|++.++-..    +.+.+|             ...|..++.+.||.++++++.
T Consensus       194 h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~h-------------~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  194 HGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPGH-------------SEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             cceeeEEEEecC-CeeeecccccceeEEecccceeE----EeccCc-------------hHhEEEEEecCCeeEEEecCC
Confidence            999999999999 99999999999999999998755    666664             789999999999999999976


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---------------CCCEEEEeeCCCeEEEE
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---------------DGLHFATGSYSNLLRIF  331 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---------------~~~~l~~~s~dg~i~iw  331 (421)
                       .++++|-+.+ +++...++.|+.++               -+++|.|               .++++.+++.|++|++|
T Consensus       256 dqtl~vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  256 DQTLRVWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             CceEEEEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence             9999999987 87777888888876               3444443               13689999999999999


Q ss_pred             ecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeE
Q 014644          332 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~l  408 (421)
                      |+.++ ..+.++.+|.+.|+.++|+|.  |+     +|++..+|+. ++|  .....+...-.|..-|+++.|+.+.+++
T Consensus       320 dv~tg-~cL~tL~ghdnwVr~~af~p~--Gk-----yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  320 DVSTG-MCLFTLVGHDNWVRGVAFSPG--GK-----YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             eccCC-eEEEEEecccceeeeeEEcCC--Ce-----EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence            99998 889999999999999999998  55     9999999999 999  4445566666889999999999999999


Q ss_pred             EEec-CCceEEEe
Q 014644          409 ACAN-GNSLFFHY  420 (421)
Q Consensus       409 a~~~-~~~~~i~~  420 (421)
                      ++|+ +-...+|.
T Consensus       392 vTGsVdqt~KvwE  404 (406)
T KOG0295|consen  392 VTGSVDQTVKVWE  404 (406)
T ss_pred             Eeccccceeeeee
Confidence            9999 55577773

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.7e-35  Score=264.10  Aligned_cols=250  Identities=16%  Similarity=0.203  Sum_probs=213.1

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCcee--------eeee------------ecC----CCC
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--------FNIV------------DMK----PSN  182 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~--------~~~~------------~~~----~~~  182 (421)
                      -|.-++ ..-...++|..|++|+..||.| .|..|++|.+.. .++        +..+            +..    ..+
T Consensus       369 ic~YT~-~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p-~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  369 ICMYTF-HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTP-KKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             EEEEEE-EEcCCcceeEeecCCcchhhccccccEEEEEecch-hhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            445555 3445679999999999999999 999999999873 111        1111            000    034


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      +.+|.++|+++.|+|+. ++|+++|.|+++|+|.+++....    -.+.+             |..+|..+.|+|-|-|+
T Consensus       447 L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~----V~y~G-------------H~~PVwdV~F~P~GyYF  508 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCL----VIYKG-------------HLAPVWDVQFAPRGYYF  508 (707)
T ss_pred             eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeE----EEecC-------------CCcceeeEEecCCceEE
Confidence            67999999999999998 99999999999999999987644    34444             58999999999999999


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      |+++. ++.++|.... ..+++.+.+|-..+               .++.|+|++.|+++||.|.++|+||+.++ ..++
T Consensus       509 atas~D~tArLWs~d~-~~PlRifaghlsDV---------------~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VR  571 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDH-NKPLRIFAGHLSDV---------------DCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVR  571 (707)
T ss_pred             EecCCCceeeeeeccc-CCchhhhccccccc---------------ceEEECCcccccccCCCCceEEEEEcCCC-cEEE
Confidence            99976 9999999986 88999999998754               78999999999999999999999999998 7799


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      .+.||.++|.+++|+|.  |+     +|++|+.|+. ++|  ..+.++....+|++.|.++.|+.||..||+|+ ++.++
T Consensus       572 iF~GH~~~V~al~~Sp~--Gr-----~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPC--GR-----YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             EecCCCCceEEEEEcCC--Cc-----eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence            99999999999999998  66     9999999999 999  45567888899999999999999999999999 66799


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      +|+.
T Consensus       645 lWD~  648 (707)
T KOG0263|consen  645 LWDL  648 (707)
T ss_pred             EEEc
Confidence            9974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2e-33  Score=221.54  Aligned_cols=264  Identities=12%  Similarity=0.136  Sum_probs=216.7

Q ss_pred             eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCce-eeeeeecCCC
Q 014644          103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-CFNIVDMKPS  181 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~-~~~~~~~~~~  181 (421)
                      ..+++.+.  +.++|+|...++   .|.+++ +.....|+.|...|+++.||++..-.||+||++++.. .+..      
T Consensus        11 viLvsA~Y--DhTIRfWqa~tG---~C~rTi-qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t------   78 (311)
T KOG0315|consen   11 VILVSAGY--DHTIRFWQALTG---ICSRTI-QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT------   78 (311)
T ss_pred             eEEEeccC--cceeeeeehhcC---eEEEEE-ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE------
Confidence            34444444  568999999998   999999 6667889999999999999999778999999996554 4443      


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                       +.+|+..|+++.|..+| +.+++|++||+++|||+|.....    +.++.              ..+|+++..+|+...
T Consensus        79 -~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~q----R~~~~--------------~spVn~vvlhpnQte  138 (311)
T KOG0315|consen   79 -FEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQ----RNYQH--------------NSPVNTVVLHPNQTE  138 (311)
T ss_pred             -EeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccc----hhccC--------------CCCcceEEecCCcce
Confidence             48999999999999999 99999999999999999985433    44444              689999999999999


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC---
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS---  337 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~---  337 (421)
                      |++++. |.|++||+.. ..+...+..... .             .+.++...|||.+|+.+...|..++|++-+..   
T Consensus       139 Lis~dqsg~irvWDl~~-~~c~~~liPe~~-~-------------~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGE-NSCTHELIPEDD-T-------------SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             EEeecCCCcEEEEEccC-CccccccCCCCC-c-------------ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence            999987 9999999985 544444332222 1             23799999999999999999999999987642   


Q ss_pred             --CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc---cccccccccCeEEEEEccCCCeEEEe
Q 014644          338 --AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKLLHLAWHPTTNLIACA  411 (421)
Q Consensus       338 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~---~~~~~~~~~~v~~~~~spd~~~la~~  411 (421)
                        ..+..+++|...+....++|+  +     .+|++.+.|.. +||+.+..   ...+.+|...+++++||.||.+|++|
T Consensus       204 ~l~P~~k~~ah~~~il~C~lSPd--~-----k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  204 ELEPVHKFQAHNGHILRCLLSPD--V-----KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             cceEhhheecccceEEEEEECCC--C-----cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence              235568899999999999999  4     49999999999 99955543   33456888999999999999999999


Q ss_pred             cC-CceEEEe
Q 014644          412 NG-NSLFFHY  420 (421)
Q Consensus       412 ~~-~~~~i~~  420 (421)
                      +. +..++|+
T Consensus       277 ssd~~~rlW~  286 (311)
T KOG0315|consen  277 SSDHTARLWD  286 (311)
T ss_pred             CCCCceeecc
Confidence            94 5588886

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.6e-32  Score=233.07  Aligned_cols=352  Identities=16%  Similarity=0.170  Sum_probs=250.7

Q ss_pred             CCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEee-ecCCCCCcccccccccccceeeccC
Q 014644           22 PEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIK-EMDHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        22 ~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      |.|.+-.+. .|..-|+|++|  +|||+++++++.||+|.+||=.+++ +..+. ...|.+            .|+++++
T Consensus       178 PPFKFk~s~r~HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG------------sIfalsW  243 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG------------SIFALSW  243 (603)
T ss_pred             CCeeeeecccccccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc------------cEEEEEE
Confidence            334444444 47778999999  7999999999999999999988887 33343 223444            5555555


Q ss_pred             CCCceeeeecccccccceeEEeecccc----------------------------------------eeeeeeeecCCCC
Q 014644           99 PPSFAHGYHLEWTENMATKIANVGNSV----------------------------------------HARCQKVYPHAHD  138 (421)
Q Consensus        99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~h~  138 (421)
                      +|+.+.+++.+.  +..+++|++.+..                                        ...+++.+ .||.
T Consensus       244 sPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-~GHn  320 (603)
T KOG0318|consen  244 SPDSTQFLTVSA--DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-SGHN  320 (603)
T ss_pred             CCCCceEEEecC--CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-cccc
Confidence            555555555444  3345555544320                                        01233355 7999


Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ..|++|..+|++++|.+| .||.|.-|+... +..-+..      -.+|...|.+++-+..+  .+++.+.|.++++.++
T Consensus       321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~-g~~~~~~------g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  321 KSITALTVSPDGKTIYSGSYDGHINSWDSGS-GTSDRLA------GKGHTNQIKGMAASESG--ELFTIGWDDTLRVISL  391 (603)
T ss_pred             cceeEEEEcCCCCEEEeeccCceEEEEecCC-ccccccc------cccccceEEEEeecCCC--cEEEEecCCeEEEEec
Confidence            999999999999999999 999999999983 4333221      16799999999887754  5888999999999988


Q ss_pred             Ccccccccchhhhcccc-----ccCC---------Cccccc--------ccccceeEEEEcCCCCEEEEecC-CeEEEEE
Q 014644          218 RQSALCDHSARILRDAA-----ESHG---------SKSFFT--------EIIASISDIKFANDGQHLLSRDY-MNLKLWD  274 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~-----~~~~---------~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d  274 (421)
                      ..........-.+...+     ..+.         ...++.        ...-...+++++|++..++.|.+ +.|+||.
T Consensus       392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys  471 (603)
T KOG0318|consen  392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS  471 (603)
T ss_pred             ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence            65433211100000000     0000         000011        11234678999999999999876 9999999


Q ss_pred             CCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccce
Q 014644          275 IRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP  353 (421)
Q Consensus       275 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  353 (421)
                      +.... ........|...+               +.+++|||+.+||+|...+.+.+||+.+.........-|+..+.++
T Consensus       472 l~g~~l~ee~~~~~h~a~i---------------T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  472 LSGDELKEEAKLLEHRAAI---------------TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             ecCCcccceeeeecccCCc---------------eEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            97422 2233444566654               7999999999999999999999999998866666777899999999


Q ss_pred             eeecCCcccccccceeeeecccCc-ccCCCCC---ccccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          354 ILQAAPRARRSSLSNLTRGLYRQA-HENSSSG---HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~---~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      +|+|+       ..++|+|+-|.. .+|....   .+...-.|...|+.+.|--+..++-+|.+-++++|+.
T Consensus       537 aWsP~-------n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  537 AWSPN-------NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             EeCCC-------ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence            99999       459999999999 9994443   3334447888899999998888777777889999974

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=241.80  Aligned_cols=281  Identities=21%  Similarity=0.335  Sum_probs=230.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      -+|+..|+++.|+| ..+.+|++++.|+.|+||++....                                         
T Consensus       211 ~gH~kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~-----------------------------------------  248 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR-----------------------------------------  248 (503)
T ss_pred             cCCccccchhhhcc-ceeeEEEecCCCceEEEEEEecCc-----------------------------------------
Confidence            48999999999963 368999999999999999987633                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        .|+++| .+|..+|.+++|+++|..++++ .|+.|++||++ .+++...+.        ...
T Consensus       249 ------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG~~~~~f~--------~~~  300 (503)
T KOG0282|consen  249 ------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TGQVLSRFH--------LDK  300 (503)
T ss_pred             ------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cceEEEEEe--------cCC
Confidence                              788888 9999999999999999999998 99999999999 566655441        235


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .++|+.|+|++++.+++|+.|+.|+.||+|+++..    +.+..|             -+.|..+.|-++|+++++.++ 
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~h-------------Lg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDRH-------------LGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHhh-------------hhheeeeEEccCCceEeeeccC
Confidence            68899999999899999999999999999998765    666664             789999999999999999987 


Q ss_pred             CeEEEEECCCCCcceeEEeec-cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC--CceeEEe
Q 014644          268 MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AGGITVE  344 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~  344 (421)
                      +.++||+.+. ..+++....+ ....               .++..+|++.+++.-+.|+.|.++.+...-  .....+.
T Consensus       364 ks~riWe~~~-~v~ik~i~~~~~hsm---------------P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  364 KSVRIWENRI-PVPIKNIADPEMHTM---------------PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             ccEEEEEcCC-CccchhhcchhhccC---------------cceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence            9999999986 4444332211 1111               578999999999999999999999976542  3356788


Q ss_pred             cCCCCc--cceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-eEEEec-CCceE
Q 014644          345 AGKNEN--RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLF  417 (421)
Q Consensus       345 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-~~~~~  417 (421)
                      +|..+-  -.+.|+|+  |+     +|++|+.+|. .+|  ....++.....|...+..+.|||..+ .+|+++ ++.|.
T Consensus       428 Gh~vaGys~~v~fSpD--G~-----~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik  500 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPD--GR-----TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK  500 (503)
T ss_pred             ceeccCceeeEEEcCC--CC-----eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence            887654  45678888  44     9999999999 898  55567777888999999999999964 466666 67799


Q ss_pred             EEe
Q 014644          418 FHY  420 (421)
Q Consensus       418 i~~  420 (421)
                      +|+
T Consensus       501 iwd  503 (503)
T KOG0282|consen  501 IWD  503 (503)
T ss_pred             ecC
Confidence            995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.8e-34  Score=234.51  Aligned_cols=265  Identities=15%  Similarity=0.236  Sum_probs=215.0

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...|.|+.+    |...+++|..|++|+|||..+-                                             
T Consensus       197 skgVYClQY----DD~kiVSGlrDnTikiWD~n~~---------------------------------------------  227 (499)
T KOG0281|consen  197 SKGVYCLQY----DDEKIVSGLRDNTIKIWDKNSL---------------------------------------------  227 (499)
T ss_pred             CCceEEEEe----cchhhhcccccCceEEeccccH---------------------------------------------
Confidence            356888887    4567899999999999997763                                             


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                     .|++.+ .||++.|.|+.|.  .+.|++| .|.+|++||++ ++++++++       -.|...|.
T Consensus       228 ---------------~c~~~L-~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~tl-------ihHceaVL  281 (499)
T KOG0281|consen  228 ---------------ECLKIL-TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNTL-------IHHCEAVL  281 (499)
T ss_pred             ---------------HHHHhh-hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhHH-------hhhcceeE
Confidence                           556666 8999999999995  6699999 99999999999 67777654       78999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      .+.|+.   .++++++.|.++++||+..... ....+++             .+|...|+.+.|+  .++|++++. .+|
T Consensus       282 hlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVL-------------vGHrAaVNvVdfd--~kyIVsASgDRTi  342 (499)
T KOG0281|consen  282 HLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVL-------------VGHRAAVNVVDFD--DKYIVSASGDRTI  342 (499)
T ss_pred             EEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHH-------------hhhhhheeeeccc--cceEEEecCCceE
Confidence            999984   6899999999999999988652 1122333             4458999999997  569998865 999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      ++|++.+ .+.+.++.+|...+               .++  --.++++++||.|.+|++||+..| .....++||..-|
T Consensus       343 kvW~~st-~efvRtl~gHkRGI---------------ACl--QYr~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLv  403 (499)
T KOG0281|consen  343 KVWSTST-CEFVRTLNGHKRGI---------------ACL--QYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELV  403 (499)
T ss_pred             EEEeccc-eeeehhhhcccccc---------------eeh--hccCeEEEecCCCceEEEEecccc-HHHHHHhchHHhh
Confidence            9999987 99999999998754               233  347999999999999999999998 8899999999999


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCCCC--C---------ccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G---------HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  418 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~---------~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i  418 (421)
                      +++.|...         .+++|+.||+ ++|+..  .         .+.....|++.|..+.|..- +++++.-++.|.|
T Consensus       404 RciRFd~k---------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-qIvsssHddtILi  473 (499)
T KOG0281|consen  404 RCIRFDNK---------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-QIISSSHDDTILI  473 (499)
T ss_pred             hheeecCc---------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-EEEeccCCCeEEE
Confidence            99999866         7999999999 999322  1         22344578889999998532 3444444899999


Q ss_pred             Ee
Q 014644          419 HY  420 (421)
Q Consensus       419 ~~  420 (421)
                      |+
T Consensus       474 Wd  475 (499)
T KOG0281|consen  474 WD  475 (499)
T ss_pred             EE
Confidence            97

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-31  Score=236.85  Aligned_cols=277  Identities=20%  Similarity=0.318  Sum_probs=226.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.++|++++|  ++++++|++++.||.|++|++.+++.                                         
T Consensus         7 ~h~~~i~~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------------------------   43 (289)
T cd00200           7 GHTGGVTCVAF--SPDGKLLATGSGDGTIKVWDLETGEL-----------------------------------------   43 (289)
T ss_pred             ccCCCEEEEEE--cCCCCEEEEeecCcEEEEEEeeCCCc-----------------------------------------
Confidence            78999999999  68899999999999999999887531                                         


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                         ...+ ..|...+..+.|+|++++|+++ .|+.|++|++. ..+....+       ..|...
T Consensus        44 -------------------~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~~~~-------~~~~~~   95 (289)
T cd00200          44 -------------------LRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECVRTL-------TGHTSY   95 (289)
T ss_pred             -------------------EEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccceEEE-------eccCCc
Confidence                               1122 5677888999999999999998 89999999998 43344333       567789


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CC
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~  268 (421)
                      +.++.|+|++ .++++++.|+.|++||+++++..    ..+..             |...+.+++|+|++.++++++ ++
T Consensus        96 i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          96 VSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLRG-------------HTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEecc-------------CCCcEEEEEEcCcCCEEEEEcCCC
Confidence            9999999997 88888888999999999865433    22223             367899999999999999988 59


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .|++||++. ++.+..+..+...+               .+++|+|+++.+++++.+|.|++||+..+ .....+..|..
T Consensus       158 ~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~  220 (289)
T cd00200         158 TIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHEN  220 (289)
T ss_pred             cEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCC
Confidence            999999986 77777777766544               78999999999999999999999999876 56667778888


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .+..+.+.++  +.     ++++++.++. ++|+.  +........+...|.+++|+|+++.|++++ ++.+.+|+
T Consensus       221 ~i~~~~~~~~--~~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         221 GVNSVAFSPD--GY-----LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ceEEEEEcCC--Cc-----EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999987  33     7888887888 99943  344455557788999999999999999988 45699985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=226.50  Aligned_cols=244  Identities=17%  Similarity=0.243  Sum_probs=204.5

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      -.+|.+.|.||++  .|...+|++|+.|++++|||+.+++++.... .|.+            .+..+.+++...|+..+
T Consensus       147 i~gHlgWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~------------~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  147 ISGHLGWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIE------------TVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hhhccceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEeec-chhh------------eeeeeeecccCceEEEe
Confidence            3589999999999  7889999999999999999999998654432 2333            34445556666666665


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      ..  +..++-||++..   +.++.| .||-..|.|++.+|.-..|++| .|.++++||++ ....+.+       +.+|.
T Consensus       212 ge--dk~VKCwDLe~n---kvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~-------l~GH~  277 (460)
T KOG0285|consen  212 GE--DKQVKCWDLEYN---KVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHV-------LSGHT  277 (460)
T ss_pred             cC--CCeeEEEechhh---hhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEE-------ecCCC
Confidence            54  678999999998   999999 9999999999999999999999 99999999999 4555544       38999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      .+|.++.+.|.. ..+++||.|++|++||++.++..    ..+             ..|...+.+++.+|....+|+++.
T Consensus       278 ~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  278 NPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             CcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccceeeEEecCCchhhhhccCC
Confidence            999999999988 78999999999999999998643    222             334789999999999989999887


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ..|+.|++.. +..+..+.+|...+               .+++...|+ ++++|+++|.|.+||.+++
T Consensus       340 dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  340 DNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             ccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            8999999975 88888888888765               677777665 6789999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.1e-31  Score=265.64  Aligned_cols=284  Identities=15%  Similarity=0.155  Sum_probs=218.1

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|...|.+++|  ++++++||+|+.|++|+||++........ .  .+                                
T Consensus       481 ~~~~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~-~--~~--------------------------------  523 (793)
T PLN00181        481 NSSNLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGR-D--IH--------------------------------  523 (793)
T ss_pred             CCCCcEEEEEE--CCCCCEEEEEeCCCEEEEEECCccccccc-c--cc--------------------------------
Confidence            48999999999  78999999999999999999764210000 0  00                                


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                       .+...+  .+...|.+++|++ ++.+|+++ .|++|++||+. .++.+..+       .+|..
T Consensus       524 -----------------~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~~~~~~-------~~H~~  576 (793)
T PLN00181        524 -----------------YPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA-RSQLVTEM-------KEHEK  576 (793)
T ss_pred             -----------------cceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-------cCCCC
Confidence                             111112  2345789999987 47889998 99999999998 45555443       78999


Q ss_pred             CeeEEEEec-CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc-CCCCEEEEec
Q 014644          189 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD  266 (421)
Q Consensus       189 ~v~~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  266 (421)
                      .|++++|+| ++ .+|++|+.|++|++||++++...    ..+..              ...+.++.|+ ++|.+|++|+
T Consensus       577 ~V~~l~~~p~~~-~~L~Sgs~Dg~v~iWd~~~~~~~----~~~~~--------------~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        577 RVWSIDYSSADP-TLLASGSDDGSVKLWSINQGVSI----GTIKT--------------KANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             CEEEEEEcCCCC-CEEEEEcCCCEEEEEECCCCcEE----EEEec--------------CCCeEEEEEeCCCCCEEEEEe
Confidence            999999997 55 89999999999999999876533    22222              3468899995 5799999987


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-----CCce
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGG  340 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-----~~~~  340 (421)
                      . +.|++||++....++..+.+|...+               ..+.|. ++.+|++++.|+.|++||+...     ....
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V---------------~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTV---------------SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCE---------------EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            6 9999999986444667777787654               688897 6789999999999999999753     1346


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc--cc-------------cccccccCeEEEEEccC
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HE-------------LSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~--~~-------------~~~~~~~~v~~~~~spd  404 (421)
                      ..+.+|...+..+.++++       ..+|++|+.|+. .+|.....  ..             ....+...|.+++|+|+
T Consensus       702 ~~~~gh~~~i~~v~~s~~-------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVS-------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             EEEcCCCCCeeEEEEcCC-------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence            788899999999999988       348999999999 99943211  10             01234557999999999


Q ss_pred             CCeEEEec-CCceEEEe
Q 014644          405 TNLIACAN-GNSLFFHY  420 (421)
Q Consensus       405 ~~~la~~~-~~~~~i~~  420 (421)
                      ++.|++|+ ++.|.||+
T Consensus       775 ~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        775 SSTLVAANSTGNIKILE  791 (793)
T ss_pred             CCeEEEecCCCcEEEEe
Confidence            99999998 56799996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=232.16  Aligned_cols=285  Identities=14%  Similarity=0.169  Sum_probs=225.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eE-EeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ..|+++|.-+.|  +++|++||+++.|.+..+|++.... ++ ......|..+|.-+.|+|.+..++++..         
T Consensus       221 ~~htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---------  289 (519)
T KOG0293|consen  221 QDHTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---------  289 (519)
T ss_pred             hhCCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---------
Confidence            479999999999  7999999999999999999965443 22 2222345555555555555555544444         


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc-
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-  185 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-  185 (421)
                           ...+.+||+.++   .+...+..+|...+.+++|.|||..+++| .|+++..||++  +......       ++ 
T Consensus       290 -----~e~~~lwDv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W-------~gv  352 (519)
T KOG0293|consen  290 -----DEVLSLWDVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNW-------EGV  352 (519)
T ss_pred             -----hHheeeccCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhcc-------ccc
Confidence                 334799999998   88888867778999999999999999999 99999999998  3333221       22 


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      ....|.+++.++|| +.+++...|..|++++..+....    .....              ..+++++..|.|++++++.
T Consensus       353 r~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~Lvn  413 (519)
T KOG0293|consen  353 RDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVN  413 (519)
T ss_pred             ccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEE
Confidence            22568999999999 99999999999999998764321    23344              5789999999999999987


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      -. ..+++||++ +...+..+.||......             ..-||.- +..++++||+|+.|+||+..++ .+..++
T Consensus       414 L~~qei~LWDl~-e~~lv~kY~Ghkq~~fi-------------IrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~L  478 (519)
T KOG0293|consen  414 LQDQEIHLWDLE-ENKLVRKYFGHKQGHFI-------------IRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVL  478 (519)
T ss_pred             cccCeeEEeecc-hhhHHHHhhcccccceE-------------EEeccCCCCcceEEecCCCceEEEEEccCC-ceeEee
Confidence            54 899999998 58888999998875422             2446654 5689999999999999999988 889999


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      .||...|+.+++.|..+      .+||++++||+ +||..
T Consensus       479 sGHs~~vNcVswNP~~p------~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  479 SGHSKTVNCVSWNPADP------EMFASASDDGTIRIWGP  512 (519)
T ss_pred             cCCcceeeEEecCCCCH------HHhhccCCCCeEEEecC
Confidence            99999999999999853      37999999999 99943

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.4e-32  Score=216.96  Aligned_cols=249  Identities=14%  Similarity=0.163  Sum_probs=204.2

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ ++|.+.|.++.|++|.+.|+++ .||.+.|||.-+. .....+       +-....|..++|+|.+ +++++|
T Consensus        46 ~~rr~L-kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~hai-------pl~s~WVMtCA~sPSg-~~VAcG  115 (343)
T KOG0286|consen   46 RTRRTL-KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAI-------PLPSSWVMTCAYSPSG-NFVACG  115 (343)
T ss_pred             eeEEEe-cccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEE-------ecCceeEEEEEECCCC-CeEEec
Confidence            455777 9999999999999999999999 9999999999844 444444       3456889999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|....||++...... .          .......+.+|.+.+.++.|-+|+..|-+.+|.++-+||+++ ++.+..|.
T Consensus       116 GLdN~Csiy~ls~~d~~-g----------~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~-g~~~~~f~  183 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAE-G----------NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET-GQQTQVFH  183 (343)
T ss_pred             CcCceeEEEeccccccc-c----------cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc-ceEEEEec
Confidence            99999999999864211 0          001112256679999999999876544444569999999997 99999999


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      +|...+               .+++++| +++.+++|+-|+..++||++.+ ...+.+.+|...|+++.|.|+       
T Consensus       184 GH~gDV---------------~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~-------  240 (343)
T KOG0286|consen  184 GHTGDV---------------MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPS-------  240 (343)
T ss_pred             CCcccE---------------EEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccC-------
Confidence            999854               8999999 8999999999999999999998 889999999999999999999       


Q ss_pred             cceeeeecccCc-ccC--CCCCccc--cccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          366 LSNLTRGLYRQA-HEN--SSSGHHE--LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw--~~~~~~~--~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      +..+++|++|+. +++  ..+..+.  ........|++++||..|++|.+|. +.++.+|++
T Consensus       241 G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  241 GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            448999999999 999  3322222  2223356899999999999999987 567999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.6e-33  Score=235.57  Aligned_cols=257  Identities=18%  Similarity=0.268  Sum_probs=213.5

Q ss_pred             CCceeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccc
Q 014644            8 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL   87 (421)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~   87 (421)
                      .|||.++.... .  .|+. ....|.++|.+++|  ++++.++++|+.+|.||+|+..-..                   
T Consensus       117 SGEFtLWNg~~-f--nFEt-ilQaHDs~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnn-------------------  171 (464)
T KOG0284|consen  117 SGEFTLWNGTS-F--NFET-ILQAHDSPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNN-------------------  171 (464)
T ss_pred             cccEEEecCce-e--eHHH-HhhhhcccceeEEE--ccCCCEEEEcCCCceEEecccchhh-------------------
Confidence            47777776622 1  1222 23589999999999  6899999999999999999975422                   


Q ss_pred             ccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644           88 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  166 (421)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~  166 (421)
                                                                ++.+...|...|++++|+|+...++++ +||+|+|||.
T Consensus       172 ------------------------------------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf  209 (464)
T KOG0284|consen  172 ------------------------------------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF  209 (464)
T ss_pred             ------------------------------------------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence                                                      122213455899999999998899998 9999999998


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      ....+ -+       .+.+|.-.|.++.|+|.. .+|++++.|..|++||.++++.+    ..+..             |
T Consensus       210 ~~~ke-e~-------vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~tlh~-------------H  263 (464)
T KOG0284|consen  210 RMPKE-ER-------VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----ATLHG-------------H  263 (464)
T ss_pred             cCCch-hh-------eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchh----hhhhh-------------c
Confidence            84333 22       348999999999999998 99999999999999999998765    44445             4


Q ss_pred             ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeC
Q 014644          247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSY  324 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~  324 (421)
                      ...|..+.|+|++.+|++++. ..++++|+++ -+.+..+++|...+               +++.|+| ...++.+|+.
T Consensus       264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~  327 (464)
T KOG0284|consen  264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGS  327 (464)
T ss_pred             cceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccC
Confidence            889999999999999999976 9999999996 78888999999865               8999999 4677889999


Q ss_pred             CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          325 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       325 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ||.|..|.+.........-.+|...|.++++.|-       +..|++|+.|.. +.|
T Consensus       328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-------Ghil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-------GHILATGSNDRTVRFW  377 (464)
T ss_pred             CCceEEEeccccccccCCCcccccceeeeecccc-------ceeEeecCCCcceeee
Confidence            9999999998655666667899999999999998       449999999999 999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.4e-31  Score=219.27  Aligned_cols=330  Identities=11%  Similarity=0.027  Sum_probs=256.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|++.|.+++.  +|+.++++||+.|..-.||++.+++. ......|++            .+.++.++.++.++++|.
T Consensus        61 ~~H~~svFavsl--~P~~~l~aTGGgDD~AflW~~~~ge~-~~eltgHKD------------SVt~~~FshdgtlLATGd  125 (399)
T KOG0296|consen   61 DKHTDSVFAVSL--HPNNNLVATGGGDDLAFLWDISTGEF-AGELTGHKD------------SVTCCSFSHDGTLLATGD  125 (399)
T ss_pred             hhcCCceEEEEe--CCCCceEEecCCCceEEEEEccCCcc-eeEecCCCC------------ceEEEEEccCceEEEecC
Confidence            369999999999  78999999999999999999999982 222233444            688889999999999998


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      +  .+.+.+|...++   .....+ .+..+.+.-+.|+|.+..|++| .||.+.+|.+. .+...++       +.+|+.
T Consensus       126 m--sG~v~v~~~stg---~~~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv-------~~Gh~~  191 (399)
T KOG0296|consen  126 M--SGKVLVFKVSTG---GEQWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKV-------MSGHNS  191 (399)
T ss_pred             C--CccEEEEEcccC---ceEEEe-ecccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeE-------ecCCCC
Confidence            8  678999999887   555565 4566778889999999999999 99999999998 4344444       489999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      ++++=.|.|+| +.++++..||+|++||+.+++..    ..+.. .           ......++.++.++..++.|+. 
T Consensus       192 ~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~-----------e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  192 PCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-A-----------EGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             CcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-c-----------ccCcCCccccccccceeEeccCC
Confidence            99999999999 99999999999999999998654    22221 0           0235677888888888888865 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.+++-...+ ++.+....+..   +.+. ..+.+.+..|-.+.++..-.+.|+|+-||+|.|||+...  ..+..-.|.
T Consensus       255 ~~~~~~~~~s-gKVv~~~n~~~---~~l~-~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he  327 (399)
T KOG0296|consen  255 GVACGVNNGS-GKVVNCNNGTV---PELK-PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHE  327 (399)
T ss_pred             ccEEEEcccc-ceEEEecCCCC---cccc-ccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCC
Confidence            8888887765 66655554200   0000 000111111134555556677899999999999999864  455666788


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  420 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~  420 (421)
                      .+|..+.|-+.        .+|++++.+|. ++|  ..+..+....+|...|.+++.+|+.+++++++++ ..++|.
T Consensus       328 ~~V~~l~w~~t--------~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  328 DGVTKLKWLNT--------DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             CceEEEEEcCc--------chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            88999999873        28999999999 999  7788899999999999999999999999999954 577775

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3e-32  Score=233.15  Aligned_cols=240  Identities=14%  Similarity=0.131  Sum_probs=205.8

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ...|++|+|+.+|..||+| .||.+++|+..  +.+..+       +..|.++|.++.|+..| .+|++++.|+++.+||
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~t-------l~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd  304 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLIST-------LGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWD  304 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC--chhhhh-------hhccCCceEEEEEcCCC-CEEEeccCCccEEEEe
Confidence            3579999999999999999 99999999997  555543       47899999999999999 9999999999999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      ..++...    +.+..|             ..+...+.|-.+..+..++.++.|+++.+.. ..|+.++.+|...+    
T Consensus       305 ~~~g~~~----q~f~~~-------------s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V----  362 (524)
T KOG0273|consen  305 AHTGTVK----QQFEFH-------------SAPALDVDWQSNDEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEV----  362 (524)
T ss_pred             ccCceEE----Eeeeec-------------cCCccceEEecCceEeecCCCceEEEEEecC-CCcceeeecccCce----
Confidence            9887654    444443             5555778998777666666779999999985 89999999999876    


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccc--ccccceeeeecc
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR--RSSLSNLTRGLY  374 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~  374 (421)
                                 ..+.|.|.|.+|+++|+|++++||.+... .....+++|...+..+.|+|..++.  ...+..+++.+.
T Consensus       363 -----------~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~  430 (524)
T KOG0273|consen  363 -----------NALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF  430 (524)
T ss_pred             -----------EEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence                       79999999999999999999999998876 7788999999999999999986543  223567899999


Q ss_pred             cCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          375 RQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       375 d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      |.. ++|  ..+..+..+..|..+|.+++|+|+|++||+|+ ++++.||+.
T Consensus       431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            999 999  45667777789999999999999999999999 677999963

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=222.02  Aligned_cols=294  Identities=13%  Similarity=0.154  Sum_probs=243.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ++.++-+.|..|  +|||++|++|+.||.|.+|+..+|++++-..+...+     .|-.-+..++|++++.+...+++|+
T Consensus       210 Fg~KSh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  210 FGQKSHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----NFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             cccccchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-----ceeecccceEEEeecccHHHhhccC
Confidence            456778899999  799999999999999999999999865544443333     2333456889999999999999998


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|.+.++   +|++.|.++|+..|+|+.|+.|+..++++ .|.++++.-++ .+++++       .+.+|+.
T Consensus       283 q--DGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LK-------EfrGHsS  349 (508)
T KOG0275|consen  283 Q--DGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLK-------EFRGHSS  349 (508)
T ss_pred             c--CCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHH-------HhcCccc
Confidence            7  788999999998   99999977999999999999999999998 99999999998 677765       3489999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  267 (421)
                      .|....|.++| +.+++++.||+|++|+..+....    ..+..           .+...+|+.+..-|. ...++.+..
T Consensus       350 yvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNr  413 (508)
T KOG0275|consen  350 YVNEATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNR  413 (508)
T ss_pred             cccceEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcC
Confidence            99999999999 99999999999999999987754    34433           112557888888774 556777765


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                       ++++|-++.  ++.++.+........            +..+++.+|.|.++++.++|+.++.+.+.++ .+..++..|
T Consensus       414 sntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~Vh  478 (508)
T KOG0275|consen  414 SNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVH  478 (508)
T ss_pred             CCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecc
Confidence             899999985  888888865433221            1258899999999999999999999999998 788899999


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ...+-.++..|.       -+.||+-+.||. ++|.
T Consensus       479 EkdvIGl~HHPH-------qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  479 EKDVIGLTHHPH-------QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccccCcc-------cchhhhhcccchhhhcC
Confidence            988888888888       338999999999 9993

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.5e-32  Score=223.34  Aligned_cols=238  Identities=17%  Similarity=0.209  Sum_probs=210.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      ||++.|.+|+|  +..|.++++++.|-.+++||.++..                                          
T Consensus       148 GHt~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------  183 (406)
T KOG0295|consen  148 GHTDSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------  183 (406)
T ss_pred             ccccceeEEEE--ecCccEEEecCCccchhheeHHHHH------------------------------------------
Confidence            89999999999  6789999999999999999987632                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                       +|++.+ .+|...|.++.|-|.|.+|+++ .|.+|+.|++. ++.+++++       .+|...
T Consensus       184 -----------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~-------~~h~ew  237 (406)
T KOG0295|consen  184 -----------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTF-------PGHSEW  237 (406)
T ss_pred             -----------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEec-------cCchHh
Confidence                             566666 7999999999999999999999 99999999999 67777755       899999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----------
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----------  258 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----------  258 (421)
                      |..++.+.|| .++++++.|.+|++|-+.+++..    ..+..             |+.+|.+++|.|.           
T Consensus       238 vr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~lR~-------------hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  238 VRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AELRE-------------HEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             EEEEEecCCe-eEEEecCCCceEEEEEeccchhh----hhhhc-------------cccceEEEEecccccCcchhhccC
Confidence            9999999999 99999999999999999987543    44444             4778888888763           


Q ss_pred             ----CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          259 ----GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       259 ----~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                          ++++++++. ++|++||+.+ +.++.++.+|..++               .+++|+|.|+||+++.+|+++++||+
T Consensus       300 ~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  300 STNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             CCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEe
Confidence                257888875 9999999998 99999999999976               89999999999999999999999999


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ++. +...++..|..-+.++.|....       .++++|+-|.. ++|
T Consensus       364 ~~~-~cmk~~~ah~hfvt~lDfh~~~-------p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  364 KNL-QCMKTLEAHEHFVTSLDFHKTA-------PYVVTGSVDQTVKVW  403 (406)
T ss_pred             ccc-eeeeccCCCcceeEEEecCCCC-------ceEEeccccceeeee
Confidence            998 7788899999999999998773       38999999998 888

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-31  Score=245.01  Aligned_cols=247  Identities=23%  Similarity=0.390  Sum_probs=206.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|++++|  ++++.++++++.|++|+|||+....                                         
T Consensus       200 ~~h~~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~-----------------------------------------  236 (456)
T KOG0266|consen  200 SGHTRGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDG-----------------------------------------  236 (456)
T ss_pred             cccccceeeeEE--CCCCcEEEEecCCceEEEeeccCCC-----------------------------------------
Confidence            489999999999  7999999999999999999994432                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        .+++++ .+|...|++++|+|+++++++| .|++|++||++ .+++.+.+       .+|..
T Consensus       237 ------------------~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l-------~~hs~  289 (456)
T KOG0266|consen  237 ------------------RNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKL-------KGHSD  289 (456)
T ss_pred             ------------------eEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEee-------eccCC
Confidence                              555667 8999999999999999999999 99999999999 57777655       89999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|++++ ++|++++.|+.|++||+.++...  ..+.+..+          .... +++.+.|+|++++++++.. 
T Consensus       290 ~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~----------~~~~-~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  290 GISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGA----------ENSA-PVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             ceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCC----------CCCC-ceeEEEECCCCcEEEEecCC
Confidence            99999999999 99999999999999999998621  11233331          1112 6899999999999999977 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-  346 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-  346 (421)
                      +.+++||++. +..+..+.+|.....         ++   .+...++.++++++|+.|+.|++||+.++ .....+.+| 
T Consensus       356 ~~~~~w~l~~-~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~  421 (456)
T KOG0266|consen  356 RTLKLWDLRS-GKSVGTYTGHSNLVR---------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHS  421 (456)
T ss_pred             CeEEEEEccC-CcceeeecccCCcce---------eE---ecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCC
Confidence            8999999986 888888888876420         11   45666889999999999999999999986 778899999 


Q ss_pred             CCCccceeeecCCcccccccceeeeec--ccCc-ccCC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGL--YRQA-HENS  381 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~--~d~~-~iw~  381 (421)
                      ...+..+.+.+.       ..++++++  .|+. ++|.
T Consensus       422 ~~~~~~~~~~~~-------~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  422 KAAVSDLSSHPT-------ENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CCceeccccCCC-------cCeeeecCcCCCceEEEec
Confidence            888889999888       44777777  5666 8883

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-31  Score=242.28  Aligned_cols=273  Identities=14%  Similarity=0.164  Sum_probs=181.3

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.++|.+++|  ++||+|||+||.|+.|+||.+...+...........-...++-   +..+.................
T Consensus       265 ah~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~---~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  265 AHKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA---NSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh---ccccCcccccccccccccccc
Confidence            79999999999  7999999999999999999987754322211111100000000   000111111110000000000


Q ss_pred             cc---ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          111 TE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       111 ~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      ..   ...+.+-........++++.| .||.+.|.+|.|+.++ +|+++ .|.+||||++. ...+++++        .|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~F--------~H  408 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKVF--------SH  408 (712)
T ss_pred             ccccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeEE--------ec
Confidence            00   001122222222334788888 9999999999999765 77776 99999999999 77888876        59


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      .+.|+|++|+|...+++++|+.||.||||++...+..    ...+.              ..-|++++|.|||++.+.|+
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl--------------~~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----DWNDL--------------RDLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----eehhh--------------hhhheeEEeccCCceEEEEE
Confidence            9999999999977799999999999999999986643    33333              46899999999999999999


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      . |.+++|+... .+....+..+.......    ...   .|+++.|.|. ...|++.+.|..|||+|.++. .++..+.
T Consensus       471 ~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~----~~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfK  541 (712)
T KOG0283|consen  471 FNGYCRFYDTEG-LKLVSDFHIRLHNKKKK----QGK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFK  541 (712)
T ss_pred             eccEEEEEEccC-CeEEEeeeEeeccCccc----cCc---eeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhc
Confidence            8 9999999974 55544443322111000    000   2378988874 345778899999999999765 4444444


Q ss_pred             cC
Q 014644          345 AG  346 (421)
Q Consensus       345 ~~  346 (421)
                      |.
T Consensus       542 G~  543 (712)
T KOG0283|consen  542 GF  543 (712)
T ss_pred             cc
Confidence            43

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-29  Score=206.19  Aligned_cols=270  Identities=17%  Similarity=0.226  Sum_probs=203.2

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ..+|+++.|  +++|.+|++++.|.+++|||..++...+....+.-             ++....+......+..++...
T Consensus        14 ~~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-------------G~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen   14 NGKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-------------GVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             CCceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-------------cccEEEEecCCceEEEccCCC
Confidence            678999999  79999999999999999999999884333322211             122222222222233333333


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      +..++..++.+.   +.++.| .||...|.+|+.+|-+..++++ .|++|++||++ ..++.-.+         +...-.
T Consensus        79 d~tIryLsl~dN---kylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~~~p  144 (311)
T KOG1446|consen   79 DDTIRYLSLHDN---KYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLSGRP  144 (311)
T ss_pred             CCceEEEEeecC---ceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecCCCc
Confidence            457888888888   999999 9999999999999999999998 99999999999 44444333         122334


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      .++|.|.| -++|++.....|++||+|.-..  .+...+..          ...-....+.+.|||||++|+.++. +.+
T Consensus       145 i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~  211 (311)
T KOG1446|consen  145 IAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSI----------TDNDEAEWTDLEFSPDGKSILLSTNASFI  211 (311)
T ss_pred             ceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEcc----------CCCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence            57899999 8888888777999999997531  11122222          0122467899999999999998877 999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-CCCC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNE  349 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~  349 (421)
                      ++.|.-. |.....+..+.......            .+.+|+||++++++|+.||+|.+|+++++ .....+++ +..+
T Consensus       212 ~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~~~~~  277 (311)
T KOG1446|consen  212 YLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGPNGGP  277 (311)
T ss_pred             EEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCCCCCC
Confidence            9999875 88888888776542111            47899999999999999999999999998 66666766 7899


Q ss_pred             ccceeeecC
Q 014644          350 NRKPILQAA  358 (421)
Q Consensus       350 ~~~~~~~~~  358 (421)
                      +..+.|.|.
T Consensus       278 ~~~~~fnP~  286 (311)
T KOG1446|consen  278 VSCVRFNPR  286 (311)
T ss_pred             ccccccCCc
Confidence            999999988

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-31  Score=217.38  Aligned_cols=242  Identities=15%  Similarity=0.173  Sum_probs=209.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ .+|.+.|+|+++.|..+++++| .|++++|||+. .+++..+       +.+|...|..+++++-. .+++++
T Consensus       142 Kl~rVi-~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-tg~Lklt-------ltGhi~~vr~vavS~rH-pYlFs~  211 (460)
T KOG0285|consen  142 KLYRVI-SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-TGQLKLT-------LTGHIETVRGVAVSKRH-PYLFSA  211 (460)
T ss_pred             eehhhh-hhccceEEEEeeCCCceeEEecCCCceeEEEEcc-cCeEEEe-------ecchhheeeeeeecccC-ceEEEe
Confidence            445666 8999999999999999999999 99999999999 5666543       48999999999999998 899999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|+.|+.||+...+.+    +.+.+             |-+.|.+++.+|.-+.|++++. .++++||+++ ...+..+
T Consensus       212 gedk~VKCwDLe~nkvI----R~YhG-------------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~~l  273 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVI----RHYHG-------------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVHVL  273 (460)
T ss_pred             cCCCeeEEEechhhhhH----HHhcc-------------ccceeEEEeccccceeEEecCCcceEEEeeecc-cceEEEe
Confidence            99999999999987654    55555             4789999999999999999865 9999999998 8889999


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      .+|...+               .++.+.|-...+++||.|++|++||+..+ +...++..|...+++++..|.       
T Consensus       274 ~GH~~~V---------------~~V~~~~~dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~-------  330 (460)
T KOG0285|consen  274 SGHTNPV---------------ASVMCQPTDPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPK-------  330 (460)
T ss_pred             cCCCCcc---------------eeEEeecCCCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCc-------
Confidence            9999876               78888886667899999999999999998 778899999999999999988       


Q ss_pred             cceeeeecccCcccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          366 LSNLTRGLYRQAHEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       366 ~~~l~~g~~d~~~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ...+|+++.|..+-|  ..++.+..+.+|..-|+.++.+.|+-+++-+..+.+.+|+
T Consensus       331 e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  331 ENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD  387 (460)
T ss_pred             hhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence            568999999999888  4556677788999999999999998554444455677775

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=1.2e-30  Score=217.64  Aligned_cols=297  Identities=16%  Similarity=0.204  Sum_probs=227.3

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      +..+-|.+-|.+|.-  .  +..+++|+.||++++||....                                       
T Consensus        99 l~~~~hdDWVSsv~~--~--~~~IltgsYDg~~riWd~~Gk---------------------------------------  135 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKG--A--SKWILTGSYDGTSRIWDLKGK---------------------------------------  135 (423)
T ss_pred             cccccchhhhhhhcc--c--CceEEEeecCCeeEEEecCCc---------------------------------------
Confidence            345578888888877  2  789999999999999998663                                       


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC---CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                            +...+ .||.++|.+++|.-   ....++++ .|.++++|.++......+.+    ..
T Consensus       136 ----------------------~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~  188 (423)
T KOG0313|consen  136 ----------------------SIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KV  188 (423)
T ss_pred             ----------------------eEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hH
Confidence                                  33344 78999999888843   23357777 99999999998544433332    12


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccc---------hhhhccccccCCCcccccccccceeEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---------ARILRDAAESHGSKSFFTEIIASISDI  253 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---------~~~~~~h~~~~~~~~~~~~~~~~v~~~  253 (421)
                      ..||...|.++...+++ ..+++|+.|.+|.||+..+.. .+..         ....+.......+...+.+|..+|.++
T Consensus       189 ~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             hcccccceeEEEecCCC-CeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence            25999999999999999 999999999999999933211 0000         000000011122334578999999999


Q ss_pred             EEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          254 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       254 ~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      .|++ ...+.+++. .+|+.||+.+ +.....+.+....                +++..+|..++|++|+.|..|++||
T Consensus       267 ~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  267 VWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             EEcC-CCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecC
Confidence            9998 557777765 9999999998 7666666665543                6999999999999999999999999


Q ss_pred             cCCCC--CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEEEEEccCCC
Q 014644          333 HGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN  406 (421)
Q Consensus       333 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~~  406 (421)
                      -+++.  ...+.+.+|.+.|.++.++|..      ...|++|+.|++ ++|   .....+..+.+|...|.++.|+.. .
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~------~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~  401 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTN------EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-G  401 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCC------ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-c
Confidence            98764  3467889999999999999984      347999999999 999   344588899999999999999865 4


Q ss_pred             eEEEec-CCceEEEe
Q 014644          407 LIACAN-GNSLFFHY  420 (421)
Q Consensus       407 ~la~~~-~~~~~i~~  420 (421)
                      .|++|+ ++.|+||.
T Consensus       402 ~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  402 LIVSGGADNKLRIFK  416 (423)
T ss_pred             eEEeccCcceEEEec
Confidence            667777 67799985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=8.3e-30  Score=229.84  Aligned_cols=340  Identities=11%  Similarity=0.041  Sum_probs=260.4

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ++.-..+|.++.|.|++....-+.--.++++.++.++... ...   .....+..+.+......+++.+++.+...+.+|
T Consensus       316 ~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~-~~~---p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg  391 (888)
T KOG0306|consen  316 TIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG-KTS---PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG  391 (888)
T ss_pred             heechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC-CCC---ccccccceeeeccchhheeEEEeecCceeeeec
Confidence            3445678999999877665533333778899999877511 110   011111122222233456666666666666665


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      .   +..+++|+..+.   +|++++ .  .+-+.+..|-|.+++++.| ..|.+.++|+. ....+..+       +.|.
T Consensus       392 a---~~SikiWn~~t~---kciRTi-~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Eti-------~AHd  454 (888)
T KOG0306|consen  392 A---GESIKIWNRDTL---KCIRTI-T--CGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVETI-------RAHD  454 (888)
T ss_pred             C---CCcEEEEEccCc---ceeEEe-c--cccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhhh-------hccc
Confidence            4   346899999988   999998 2  3378999999999999999 99999999998 55566544       7899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc-chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      +.|++++.+||+ ..+++||.|.+|++||+.--..... ..+.+..+      ....-.....|.++.+||||++|+.+-
T Consensus       455 gaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~------~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  455 GAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK------HTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             cceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeec------cceEEeccccEEEEEEcCCCcEEEEEe
Confidence            999999999999 9999999999999999753211000 00111110      000011256899999999999999985


Q ss_pred             -CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                       +.++++|-+++ -+..-.+.||.-++               .++..+||++.++|||.|.+|+||-++-| .+.+.+-+
T Consensus       528 LdnTVkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fA  590 (888)
T KOG0306|consen  528 LDNTVKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFA  590 (888)
T ss_pred             ccCeEEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhc
Confidence             49999999987 77777788998876               89999999999999999999999999987 78889999


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      |.+.|..+.|.|.       ..++.+++.|+. +-|+.  -+.+..+.+|...|++++.+|+|.++++++ +-+|++|.
T Consensus       591 HdDSvm~V~F~P~-------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  591 HDDSVMSVQFLPK-------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             ccCceeEEEEccc-------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            9999999999997       558999999999 99943  456777889999999999999999999999 56799995

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=6.8e-30  Score=203.10  Aligned_cols=273  Identities=18%  Similarity=0.278  Sum_probs=218.5

Q ss_pred             ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ...+|..+|.+|+|  +-+|..|++|+.|+++++|+++......-                                   
T Consensus        15 ~~~~~~~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~-----------------------------------   57 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE-----------------------------------   57 (313)
T ss_pred             HhhhhhhcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----------------------------------
Confidence            34578999999999  78999999999999999999987531100                                   


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                             ..+ .+|.+.|-.++|+| ....++++ .|.+|++||++ .+++...+       ..
T Consensus        58 -----------------------~~~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~~k~~~~i-------~~  105 (313)
T KOG1407|consen   58 -----------------------LVY-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-SGKCTARI-------ET  105 (313)
T ss_pred             -----------------------hcc-cCCCcchhhheeCCCCCcceEEecCCceEEEEEec-cCcEEEEe-------ec
Confidence                                   112 78999999999987 46678887 99999999999 45554443       11


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      . ..-.-+.|+|+| .+++.++.|..|.+.|.++.+...    ..+-              ...+..+.|+.++.+++..
T Consensus       106 ~-~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~----~~~~--------------~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen  106 K-GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN----EEQF--------------KFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             c-CcceEEEEcCCC-CEEEEecCcccEEEEEecccceee----hhcc--------------cceeeeeeecCCCCEEEEe
Confidence            2 223457899999 999999999999999999865431    1111              3467888999877777766


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. |.|.|..... -+++..+++|....               .++.|+|+|+++|+|+.|..+.+||++.. ...+.+.
T Consensus       166 ~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is  228 (313)
T KOG1407|consen  166 NGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS  228 (313)
T ss_pred             cCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeeccChhHh-hhheeec
Confidence            55 9999999874 88999999998754               68999999999999999999999999876 6688899


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEecC
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~  413 (421)
                      .+.-+|+.+.|+-+  |+     +||+|+.|-- .|= ...+.....+.+.++...++|||...+||.+++
T Consensus       229 RldwpVRTlSFS~d--g~-----~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHD--GR-----MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             cccCceEEEEeccC--cc-----eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEec
Confidence            99999999999988  55     9999999977 444 333444556678889999999999999998874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.6e-30  Score=235.30  Aligned_cols=294  Identities=16%  Similarity=0.183  Sum_probs=231.6

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      +..|..++|  +|...+++++--.|.|++||.+-+. +.++..  |            ++.+..+.+.+...++.+|+- 
T Consensus         9 SsRvKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFde--H------------dGpVRgv~FH~~qplFVSGGD-   71 (1202)
T KOG0292|consen    9 SSRVKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--H------------DGPVRGVDFHPTQPLFVSGGD-   71 (1202)
T ss_pred             cccccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhhc--c------------CCccceeeecCCCCeEEecCC-
Confidence            567899999  8999999999999999999988765 222222  3            356777777888888888865 


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                       +..+++|+....   +|+-++ .||-+-|+.+.|++.-.+|+++ +|.+|+||+.. +..++.++       ++|...|
T Consensus        72 -DykIkVWnYk~r---rclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavl-------tGHnHYV  138 (1202)
T KOG0292|consen   72 -DYKIKVWNYKTR---RCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVL-------TGHNHYV  138 (1202)
T ss_pred             -ccEEEEEecccc---eehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEE-------ecCceEE
Confidence             568999999988   999999 8999999999999999999999 99999999999 77888776       8999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch----hhhccc--------cccCCCcccccccccceeEEEEcCC
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----RILRDA--------AESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~h--------~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                      .|..|+|.. .+++++|.|.+||+||+..-+......    ..+.++        ...-..+..+.+|...|+-++|+|.
T Consensus       139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence            999999998 899999999999999987532211000    011110        0122345668999999999999999


Q ss_pred             CCEEEEecC-CeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          259 GQHLLSRDY-MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       259 ~~~l~~~~~-~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      -.+|++|+| +.|++|.+...+ -.+.+.++|...+               .++-|+|...+|++.++|++|++||+...
T Consensus       218 lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  218 LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             cceEEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccc
Confidence            999999987 999999996311 2356678888876               79999999999999999999999999875


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  380 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw  380 (421)
                       ...++++...+..+.++..|.       +++++.|.+.|..++
T Consensus       283 -t~v~tfrrendRFW~laahP~-------lNLfAAgHDsGm~VF  318 (1202)
T KOG0292|consen  283 -TSVQTFRRENDRFWILAAHPE-------LNLFAAGHDSGMIVF  318 (1202)
T ss_pred             -cceeeeeccCCeEEEEEecCC-------cceeeeecCCceEEE
Confidence             556666656666666666665       345555555554333

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-30  Score=234.17  Aligned_cols=291  Identities=15%  Similarity=0.190  Sum_probs=236.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .|-.+.|.+++|. .|+.++||.++..+.+|+++..+...+-+  ..|.+            .+++++...++-++++++
T Consensus       320 vG~ndEI~Dm~~l-G~e~~~laVATNs~~lr~y~~~~~~c~ii--~GH~e------------~vlSL~~~~~g~llat~s  384 (775)
T KOG0319|consen  320 VGYNDEILDMKFL-GPEESHLAVATNSPELRLYTLPTSYCQII--PGHTE------------AVLSLDVWSSGDLLATGS  384 (775)
T ss_pred             cCCchhheeeeec-CCccceEEEEeCCCceEEEecCCCceEEE--eCchh------------heeeeeecccCcEEEEec
Confidence            3668899999997 68889999999999999998887664422  22434            455555555667788887


Q ss_pred             cccccceeEEeecccc-eeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeec-CCCCCCc
Q 014644          110 WTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDM-KPSNMDD  185 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~-~~~~~~~  185 (421)
                      .  +..+++|.++... ...|+... .+|++.|.+++++..+ .+|+++ .|+++++|++....+.-..+.+ ...+...
T Consensus       385 K--D~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  385 K--DKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             C--CceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            7  6689999884432 23566677 8999999999997754 577777 9999999999842211111100 0113367


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...|.+++.+|+. ++|++||.|++.+||++.+.+..    .++.+             |...+.++.|+|..+.++++
T Consensus       462 HdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~----~vLsG-------------H~RGvw~V~Fs~~dq~laT~  523 (775)
T KOG0319|consen  462 HDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLL----GVLSG-------------HTRGVWCVSFSKNDQLLATC  523 (775)
T ss_pred             hcccccceEecCCC-ceEEecccccceeeecccCceEE----EEeeC-------------CccceEEEEeccccceeEec
Confidence            99999999999998 99999999999999999965543    44445             58999999999999999998


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. ++|+||.+.+ ..+++++.+|...+               ..+.|-.+|+.|++++.||-|++|++.+. .....+.
T Consensus       524 SgD~TvKIW~is~-fSClkT~eGH~~aV---------------lra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD  586 (775)
T KOG0319|consen  524 SGDKTVKIWSIST-FSCLKTFEGHTSAV---------------LRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLD  586 (775)
T ss_pred             cCCceEEEEEecc-ceeeeeecCcccee---------------EeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhh
Confidence            65 9999999997 99999999999876               89999999999999999999999999998 8899999


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      +|.+.|++++.++.       ..++++|+.||. .+|
T Consensus       587 ~H~DrvWaL~~~~~-------~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  587 AHNDRVWALSVSPL-------LDMFVTGGGDGRIIFW  616 (775)
T ss_pred             hccceeEEEeecCc-------cceeEecCCCeEEEEe
Confidence            99999999999988       558999999999 999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-30  Score=227.52  Aligned_cols=274  Identities=15%  Similarity=0.143  Sum_probs=227.5

Q ss_pred             ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc
Q 014644           92 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  170 (421)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~  170 (421)
                      ++.++.+.|...++..+-.  .+.+.+|+.++.   ..++.+ .-..-+|++..|-+.-+++++| +|..|++|+.+ +.
T Consensus        15 RVKsVd~HPtePw~la~Ly--nG~V~IWnyetq---tmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~   87 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAALY--NGDVQIWNYETQ---TMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TG   87 (794)
T ss_pred             ceeeeecCCCCceEEEeee--cCeeEEEecccc---eeeeee-eecccchhhheeeeccceEEEecCCceEEEEecc-cc
Confidence            4445555555555555554  567899999998   888888 6778899999999999999999 99999999999 56


Q ss_pred             eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644          171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                      +.++.+       +.|.+.|++++.+|.. .+++++|.|-+|++||-..+=.+   .+++++             |...|
T Consensus        88 ekV~~F-------eAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qtfeG-------------H~HyV  143 (794)
T KOG0276|consen   88 EKVKTF-------EAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQTFEG-------------HEHYV  143 (794)
T ss_pred             eeeEEe-------eccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeEEcC-------------cceEE
Confidence            666655       8999999999999998 89999999999999998875333   245555             58999


Q ss_pred             eEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEEeeCCC
Q 014644          251 SDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSN  326 (421)
Q Consensus       251 ~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg  326 (421)
                      .+++|.| |...+++++- ++|++|.+.. ..+..++++|+..+               .++++-+.  ..+|++|++|.
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCc
Confidence            9999999 5668888875 9999999986 88899999999876               78998874  46999999999


Q ss_pred             eEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccc-cccCeEEEEEcc
Q 014644          327 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN-LSSKLLHLAWHP  403 (421)
Q Consensus       327 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~-~~~~v~~~~~sp  403 (421)
                      +|+|||.++. .+++++.||...|..+.|.|.       .+.+++|+.||+ +||.. .-.+..... .-.+|++++-.+
T Consensus       208 tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k  279 (794)
T KOG0276|consen  208 TIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK  279 (794)
T ss_pred             eEEEeecchH-HHHHHhhcccccceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence            9999999987 889999999999999999999       669999999999 99933 223333322 346899999999


Q ss_pred             CCCeEEEecCCceEEEe
Q 014644          404 TTNLIACANGNSLFFHY  420 (421)
Q Consensus       404 d~~~la~~~~~~~~i~~  420 (421)
                      .+..+++|.+.+..+.+
T Consensus       280 ~~~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  280 GDGKIAVGFDEGSVTVK  296 (794)
T ss_pred             CCCeEEEeccCCcEEEE
Confidence            99999999987765543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-29  Score=200.23  Aligned_cols=286  Identities=14%  Similarity=0.169  Sum_probs=218.1

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      +.-.||+.+++.|+|  +.+|.+|++++.|.++.||-..++                                       
T Consensus         4 i~l~GHERplTqiKy--N~eGDLlFscaKD~~~~vw~s~nG---------------------------------------   42 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNG---------------------------------------   42 (327)
T ss_pred             cccccCccccceEEe--cCCCcEEEEecCCCCceEEEecCC---------------------------------------
Confidence            445689999999999  899999999999999999986555                                       


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                           +.+.++ .||++.|+|+....+.+.+++| .|.+++|||++ .++.+..+        .
T Consensus        43 ---------------------erlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la~~--------k   91 (327)
T KOG0643|consen   43 ---------------------ERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLATW--------K   91 (327)
T ss_pred             ---------------------ceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEEEe--------e
Confidence                                 334556 8999999999999999999999 99999999999 55555544        2


Q ss_pred             cCCCeeEEEEecCCCCeEEEEE-----cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          186 LTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ...+|..+.|+++| ++++...     ..+.|.++|++.....      .    ....+-..+..+...++.+-|.|-++
T Consensus        92 ~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~------~----~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   92 TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSD------I----DSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhh------h----cccCceEEecCCccceeeeeecccCC
Confidence            45789999999999 7776665     3468999999854311      0    00011111233467899999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      +|++|.+ |.|.+||+++..+.+..-+.|...+               ++++++||..+++++|.|.+-++||+.+. ..
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dttakl~D~~tl-~v  224 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTAKLVDVRTL-EV  224 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccceeeeccce-ee
Confidence            9999976 9999999998446666667777655               79999999999999999999999999976 33


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeee-cccCcccC----C------------CCCccccccccccCeEEEEEc
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQAHEN----S------------SSGHHELSYNLSSKLLHLAWH  402 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~d~~~iw----~------------~~~~~~~~~~~~~~v~~~~~s  402 (421)
                      ++++. -.-|+++.+++|..       ..++.| +.+...+-    .            ..|.+....+|-++|++++||
T Consensus       225 ~Kty~-te~PvN~aaisP~~-------d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  225 LKTYT-TERPVNTAAISPLL-------DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             EEEee-ecccccceeccccc-------ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            33333 34678888888872       244443 33333332    1            124455667899999999999


Q ss_pred             cCCCeEEEecCCc-eEEE
Q 014644          403 PTTNLIACANGNS-LFFH  419 (421)
Q Consensus       403 pd~~~la~~~~~~-~~i~  419 (421)
                      |||+..++|+.|+ +++.
T Consensus       297 PdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             CCCcccccCCCCceEEEE
Confidence            9999999999554 6553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-30  Score=206.61  Aligned_cols=253  Identities=18%  Similarity=0.205  Sum_probs=205.3

Q ss_pred             CCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCC
Q 014644           22 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  101 (421)
Q Consensus        22 ~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  101 (421)
                      +.+....++.-++.+..|+|++ ...+.+++++.||+++|||....+                                 
T Consensus        49 ~gi~e~~s~d~~D~LfdV~Wse-~~e~~~~~a~GDGSLrl~d~~~~s---------------------------------   94 (311)
T KOG0277|consen   49 KGIQECQSYDTEDGLFDVAWSE-NHENQVIAASGDGSLRLFDLTMPS---------------------------------   94 (311)
T ss_pred             CCeEEEEeeecccceeEeeecC-CCcceEEEEecCceEEEeccCCCC---------------------------------
Confidence            3455566677788999999953 336789999999999999954322                                 


Q ss_pred             ceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644          102 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                                                .+++.+ +.|..+|.++.|++ +.+.++++ .|++|++|+.. ..+.+.++   
T Consensus        95 --------------------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf---  143 (311)
T KOG0277|consen   95 --------------------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTF---  143 (311)
T ss_pred             --------------------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEee---
Confidence                                      455666 89999999999998 45566677 99999999998 55666554   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-  258 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-  258 (421)
                          .+|...|+...|+|..+++++++|.|+++++||++.....    ..+..             |...+.++.|+.- 
T Consensus       144 ----~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~  202 (311)
T KOG0277|consen  144 ----NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYN  202 (311)
T ss_pred             ----cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccC
Confidence                8999999999999998899999999999999999875322    33555             4779999999985 


Q ss_pred             CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCC
Q 014644          259 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       259 ~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ...+++|+. +.|++||+++-..++..+.+|+..+               +.+.|||- ...|++++.|-+++|||....
T Consensus       203 ~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  203 HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             CcEEEecCCCceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccc
Confidence            455666654 9999999998788888898888765               89999995 567999999999999999877


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ...+.+...|+.-+..+.|++..++      .+|+.+-|.. .+|+
T Consensus       268 ds~~e~~~~HtEFv~g~Dws~~~~~------~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  268 DSAIETVDHHTEFVCGLDWSLFDPG------QVASTGWDELLYVWN  307 (311)
T ss_pred             hhhhhhhhccceEEeccccccccCc------eeeecccccceeeec
Confidence            6677788889999999999887443      5788888887 8883

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6e-31  Score=207.78  Aligned_cols=284  Identities=13%  Similarity=0.122  Sum_probs=228.3

Q ss_pred             ccccccccccEEEEEEEEc-CCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           26 YLKSLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~-~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .+..-+|+.+|-.++|+|- |+|-+|++++.|+.-.+-+=+++. +-.+..  |++.|++.            ..+.+..
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg--hkgavw~~------------~l~~na~   72 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG--HKGAVWSA------------TLNKNAT   72 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec--cCcceeee------------ecCchhh
Confidence            3456799999999999653 468889999999999888877776 444433  55555533            3333333


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                      ..++++  .+.+.++|+.-++   ..+..+  .|..-|.+++|+.|.++|++| .+.-+++||++..+...+       .
T Consensus        73 ~aasaa--adftakvw~a~tg---delhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-------E  138 (334)
T KOG0278|consen   73 RAASAA--ADFTAKVWDAVTG---DELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-------E  138 (334)
T ss_pred             hhhhhc--ccchhhhhhhhhh---hhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------h
Confidence            222222  2557799998877   666666  799999999999999999999 999999999985444332       4


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      +.+|++.|..+.|.... +.|++++.|++||+||.+++...    +.+..              +.+|+++.++++|++|
T Consensus       139 ~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRIL  199 (334)
T ss_pred             hcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEE
Confidence            58999999999999887 88999999999999999998765    44444              5689999999999999


Q ss_pred             EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                      ..+..+.|.+||..+ -.+++.++.+...                .+.+.+|+...+++|++|+.++.||..++......
T Consensus       200 Tia~gssV~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  200 TIAYGSSVKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             EEecCceeEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence            888778999999986 6777777665543                68899999999999999999999999999555554


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ..+|.++|-++.|+|+       +...++|+.||+ +||
T Consensus       263 nkgh~gpVhcVrFSPd-------GE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPD-------GELYASGSEDGTIRLW  294 (334)
T ss_pred             ccCCCCceEEEEECCC-------CceeeccCCCceEEEE
Confidence            5999999999999999       448999999999 999

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=5.5e-30  Score=207.52  Aligned_cols=242  Identities=18%  Similarity=0.189  Sum_probs=196.7

Q ss_pred             eeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644          129 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       129 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      ++..+ .+|++.|+.+.|+|+|.+||+| .|..|.+|++....+-+.       .+.+|.++|..+.|.+|+ +.|++++
T Consensus        39 p~m~l-~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~-------~lkgHsgAVM~l~~~~d~-s~i~S~g  109 (338)
T KOG0265|consen   39 PIMLL-PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW-------VLKGHSGAVMELHGMRDG-SHILSCG  109 (338)
T ss_pred             hhhhc-CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee-------eeccccceeEeeeeccCC-CEEEEec
Confidence            33444 8999999999999999999999 999999999872323222       447999999999999999 9999999


Q ss_pred             cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-EecC-CeEEEEECCCCCcceeEE
Q 014644          208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      .|.+|+.||+++++..    +.+..             |..-++.+.-+.-|..++ ++++ +++++||+++ ...++++
T Consensus       110 tDk~v~~wD~~tG~~~----rk~k~-------------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~  171 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRI----RKHKG-------------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTF  171 (338)
T ss_pred             CCceEEEEecccceee----ehhcc-------------ccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhcc
Confidence            9999999999998765    44444             477888888555565554 6676 9999999996 7777777


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      ......                +++.|..++..+.+|+-|+.|++||++.. ....++.||.++|..+..++.       
T Consensus       172 ~~kyql----------------tAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~-------  227 (338)
T KOG0265|consen  172 ENKYQL----------------TAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRY-------  227 (338)
T ss_pred             ccceeE----------------EEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccC-------
Confidence            544432                79999999999999999999999999876 778999999999999999988       


Q ss_pred             cceeeeecccCc-ccCCC-----CCc-ccc----ccccccCeEEEEEccCCCeEEEecCC-ceEEEeC
Q 014644          366 LSNLTRGLYRQA-HENSS-----SGH-HEL----SYNLSSKLLHLAWHPTTNLIACANGN-SLFFHYA  421 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw~~-----~~~-~~~----~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~~  421 (421)
                      +.++.+-+.|.. ++|+.     .+. +..    ...++.....++|+|+++.+.+|+.| .+|+|++
T Consensus       228 gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  228 GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence            448999999999 99932     222 222    22445667789999999999999955 5999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.9e-30  Score=214.38  Aligned_cols=278  Identities=12%  Similarity=0.049  Sum_probs=219.7

Q ss_pred             eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce
Q 014644           93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  171 (421)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~  171 (421)
                      +--+.++++++++++++.  +.+..+|.+......+..+++ .+|..+|..+.||||.++|+++ .|..+.+||+. .+.
T Consensus       227 VWfl~FS~nGkyLAsaSk--D~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd  302 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASK--DSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGD  302 (519)
T ss_pred             EEEEEEcCCCeeEeeccC--CceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCC-cch
Confidence            445667788999999887  456677877766556778888 8999999999999999999998 88889999999 555


Q ss_pred             eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644          172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  251 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  251 (421)
                      +.....      .++...+.+++|.||| ..+++|+.|+++..||+.....     ..|++ ..           ...|.
T Consensus       303 ~~~~y~------~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~-----~~W~g-vr-----------~~~v~  358 (519)
T KOG0293|consen  303 LRHLYP------SGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNIL-----GNWEG-VR-----------DPKVH  358 (519)
T ss_pred             hhhhcc------cCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchh-----hcccc-cc-----------cceeE
Confidence            554431      3356889999999999 9999999999999999986531     34444 10           24689


Q ss_pred             EEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644          252 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  330 (421)
Q Consensus       252 ~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i  330 (421)
                      ++++++||+++++. .+..|++|+..+ .........+.. +               ++++.|.|++++++.-.+..|++
T Consensus       359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~-i---------------ts~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP-I---------------TSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc-e---------------eEEEEcCCCcEEEEEcccCeeEE
Confidence            99999999998865 559999999875 444433433332 2               79999999999999999999999


Q ss_pred             EecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-
Q 014644          331 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-  406 (421)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~-  406 (421)
                      ||++.. .....+.||+..-..+.-+..  |.  +..++++|+.|++ +||  ..+.++..+.||...|++++|+|..+ 
T Consensus       422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFg--g~--~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  422 WDLEEN-KLVRKYFGHKQGHFIIRSCFG--GG--NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             eecchh-hHHHHhhcccccceEEEeccC--CC--CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence            999954 677888898876555544433  11  1358999999999 999  66788889999999999999999875 


Q ss_pred             eEEEecC-CceEEEe
Q 014644          407 LIACANG-NSLFFHY  420 (421)
Q Consensus       407 ~la~~~~-~~~~i~~  420 (421)
                      ++|+|++ +.|+||.
T Consensus       497 m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  497 MFASASDDGTIRIWG  511 (519)
T ss_pred             HhhccCCCCeEEEec
Confidence            5888885 5599995

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=196.89  Aligned_cols=244  Identities=15%  Similarity=0.170  Sum_probs=194.4

Q ss_pred             eeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCc--eeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644          128 RCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  203 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  203 (421)
                      ..++.+ ++|.+++..++|+|. |..||++ .|+.|++|+.....  .+..++      -.+|+..|++++|+|.| ++|
T Consensus         5 ~~~~~~-~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl------d~~hkrsVRsvAwsp~g-~~L   76 (312)
T KOG0645|consen    5 ILEQKL-SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL------DDGHKRSVRSVAWSPHG-RYL   76 (312)
T ss_pred             eeEEee-cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec------cccchheeeeeeecCCC-cEE
Confidence            344556 899999999999998 8899999 99999999998311  233332      26899999999999999 999


Q ss_pred             EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC--Cc
Q 014644          204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD--ST  280 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~--~~  280 (421)
                      +++|.|.++.||.-..+..  +....+             .+|...|.+++|+++|.+||+++. ..|-||.....  -+
T Consensus        77 a~aSFD~t~~Iw~k~~~ef--ecv~~l-------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEF--ECVATL-------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             EEeeccceEEEeecCCCce--eEEeee-------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence            9999999999997665432  112333             456999999999999999999976 99999998732  34


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC--CceeEEecCCCCccceeeecC
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--AGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      +...++.|.+-+               -.+.|+|...+|+++|+|++|++|+-..+.  ...+++.+|...|.+++|.+.
T Consensus       142 c~aVL~~HtqDV---------------K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  142 CIAVLQEHTQDV---------------KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI  206 (312)
T ss_pred             EEeeeccccccc---------------cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC
Confidence            566778888754               789999999999999999999999877322  458899999999999999988


Q ss_pred             CcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          359 PRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       359 ~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                             +..|+++++|+. +||..-  -.....|+..+..++|.  .-.||+++ ++.|++|.
T Consensus       207 -------G~rl~s~sdD~tv~Iw~~~--~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  207 -------GSRLVSCSDDGTVSIWRLY--TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             -------CceEEEecCCcceEeeeec--cCcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence                   348999999999 999321  11223467889999999  44667666 77798885

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-29  Score=200.01  Aligned_cols=259  Identities=15%  Similarity=0.172  Sum_probs=201.2

Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      +.+.|.+.......+..+.+  .-.+.+..++|++. ...++++ .||+++|||......++..       +++|...|.
T Consensus        38 G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~-------~kEH~~EV~  108 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSY--DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHK-------FKEHKREVY  108 (311)
T ss_pred             ceEEEEecCCCCCeEEEEee--ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhH-------HHhhhhheE
Confidence            34555555433222333333  34678999999985 4455566 9999999997755555543       488999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-Ce
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MN  269 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~  269 (421)
                      ++.|++.....++++|.|++|++|+...+...    .++.+             |...|...+|+|. +.++++++. +.
T Consensus       109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv----~Tf~g-------------h~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen  109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV----QTFNG-------------HNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             EeccccccceeEEeeccCCceEeecCCCCcce----EeecC-------------CccEEEEEecCCCCCCeEEEccCCce
Confidence            99999987678888999999999998765433    44444             5899999999995 667777754 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      +++||++..++.+. +..|...+               .++.|+. +...|+||+.|+.|++||++.-...+..+.+|.-
T Consensus       172 l~lwdvr~~gk~~~-i~ah~~Ei---------------l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~  235 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMS-IEAHNSEI---------------LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL  235 (311)
T ss_pred             EEEEEecCCCceeE-EEecccee---------------EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce
Confidence            99999998777665 77887543               7999998 6778999999999999999998888999999999


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCCCC---CccccccccccCeEEEEEccC-CCeEEEec-CCceEEEe
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPT-TNLIACAN-GNSLFFHY  420 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~---~~~~~~~~~~~~v~~~~~spd-~~~la~~~-~~~~~i~~  420 (421)
                      .|+.+.|+|.+      -..|++++.|-+ +||+..   ..+....-|+.-|..+.||+- ..++|+.+ +..++||+
T Consensus       236 AVRkvk~Sph~------~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  236 AVRKVKFSPHH------ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EEEEEecCcch------hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            99999999984      247999999999 999433   334444567888999999987 45677766 77899998

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=219.68  Aligned_cols=296  Identities=17%  Similarity=0.255  Sum_probs=211.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecC--CCCCcccccccccccceeeccCCCCceee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMD--HFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      .+|+..|.++++  .|.|..|++||.|-+|++||+....  ++.+....  ...++.++.|+.....++++..+.     
T Consensus       164 ~hgtk~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a-----  236 (641)
T KOG0772|consen  164 KHGTKIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA-----  236 (641)
T ss_pred             cCCceEEEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc-----
Confidence            467889999999  8999999999999999999987644  22221111  122344555555444444444322     


Q ss_pred             eecccccccceeEEeecccceeeeee---------eecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeee
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQK---------VYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFN  174 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~  174 (421)
                               .+++.|-+.....++.+         .. +||...++|.+|+|+. ..++++ .||++++||++......+
T Consensus       237 ---------qakl~DRdG~~~~e~~KGDQYI~Dm~nT-KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  237 ---------QAKLLDRDGFEIVEFSKGDQYIRDMYNT-KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             ---------ceeEEccCCceeeeeeccchhhhhhhcc-CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence                     23333332221112221         22 7999999999999964 355566 999999999986666666


Q ss_pred             eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc--ceeE
Q 014644          175 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISD  252 (421)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~  252 (421)
                      ++..+  ...+..-++++++|+|++ +.||+|..||.|.+|+.+..... ....+-..             |..  .|++
T Consensus       307 Vik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~A-------------H~~g~~Its  369 (641)
T KOG0772|consen  307 VIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDA-------------HLPGQDITS  369 (641)
T ss_pred             EEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc-cceEeeec-------------cCCCCceeE
Confidence            65333  334556788999999999 89999999999999998654321 11122222             344  8999


Q ss_pred             EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------C
Q 014644          253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------S  325 (421)
Q Consensus       253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------d  325 (421)
                      |.||+||++|++.+. +++++||++...+++....+-...             |.-+.++|||+.++|++|+.      .
T Consensus       370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~  436 (641)
T KOG0772|consen  370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTA  436 (641)
T ss_pred             EEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCC
Confidence            999999999999765 999999999877777665543221             12268999999999999864      5


Q ss_pred             CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          326 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      |.+.+||..+. ..+..+......|-.+.|+|.       ++.+..|+.||. +++
T Consensus       437 g~L~f~d~~t~-d~v~ki~i~~aSvv~~~Whpk-------LNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  437 GTLFFFDRMTL-DTVYKIDISTASVVRCLWHPK-------LNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEEeccce-eeEEEecCCCceEEEEeecch-------hhheeeecCCCceEEE
Confidence            78999998876 667777777888999999998       678899999999 766

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.4e-29  Score=233.87  Aligned_cols=305  Identities=15%  Similarity=0.171  Sum_probs=224.0

Q ss_pred             cc-cccEEEEEEEEcCCCCeEEEEe--CCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           31 EI-EEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h-~~~V~~v~~~~~~~~~~l~t~s--~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      +| +..|.+|..  +|++..++||+  .|+.++||+.+.-- .....                                 
T Consensus        10 ~H~~~~IfSIdv--~pdg~~~aTgGq~~d~~~~iW~~~~vl-~~~~~---------------------------------   53 (942)
T KOG0973|consen   10 NHNEKSIFSIDV--HPDGVKFATGGQVLDGGIVIWSQDPVL-DEKEE---------------------------------   53 (942)
T ss_pred             ccCCeeEEEEEe--cCCceeEecCCccccccceeecccccc-chhhh---------------------------------
Confidence            44 446889999  89999999999  99999999965421 00000                                 


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC--c------------ee
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--D------------QC  172 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~--~------------~~  172 (421)
                                 ++...   .+.+-.. ..|.+.|+|+.|+|||++||+| +|+.|.+|.....  +            +.
T Consensus        54 -----------~~~~l---~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~  118 (942)
T KOG0973|consen   54 -----------KNENL---PKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVES  118 (942)
T ss_pred             -----------hhccc---chhheee-ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccce
Confidence                       00000   0233333 7899999999999999999999 9999999998720  0            01


Q ss_pred             eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          173 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       173 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      ++.+    ..+.+|...|..++|+|++ .+|++++.|++|.+||.++....    +.+.+|             .+.|-.
T Consensus       119 wk~~----~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~----~vl~~H-------------~s~VKG  176 (942)
T KOG0973|consen  119 WKVV----SILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELL----KVLRGH-------------QSLVKG  176 (942)
T ss_pred             eeEE----EEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceee----eeeecc-------------cccccc
Confidence            1111    2357899999999999999 99999999999999999986433    565554             899999


Q ss_pred             EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC----CCe
Q 014644          253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNL  327 (421)
Q Consensus       253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~----dg~  327 (421)
                      +.|.|-|+|||+-++ ++|++|++.. -...+.+..+-...+..       ..  ++.+.|||||++|++...    -..
T Consensus       177 vs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~-------T~--f~RlSWSPDG~~las~nA~n~~~~~  246 (942)
T KOG0973|consen  177 VSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLT-------TF--FLRLSWSPDGHHLASPNAVNGGKST  246 (942)
T ss_pred             eEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCc-------ce--eeecccCCCcCeecchhhccCCcce
Confidence            999999999999876 9999999764 55555555543321100       11  178999999999997643    346


Q ss_pred             EEEEecCCCCCceeEEecCCCCccceeeecCCc------cccc----ccceeeeecccCc-ccCCC--CCcccccc-ccc
Q 014644          328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPR------ARRS----SLSNLTRGLYRQA-HENSS--SGHHELSY-NLS  393 (421)
Q Consensus       328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~l~~g~~d~~-~iw~~--~~~~~~~~-~~~  393 (421)
                      +.|.+-.+. .....+-||..++..+.|.|.--      |...    .+..+|+|+.|+. .+|..  ..++.... -+.
T Consensus       247 ~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~  325 (942)
T KOG0973|consen  247 IAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN  325 (942)
T ss_pred             eEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence            888887665 56788999999999999998611      1110    1136899999999 99943  23333333 457


Q ss_pred             cCeEEEEEccCCCeEEEec-CCceEEE
Q 014644          394 SKLLHLAWHPTTNLIACAN-GNSLFFH  419 (421)
Q Consensus       394 ~~v~~~~~spd~~~la~~~-~~~~~i~  419 (421)
                      .+|.+++|+|||-.|.+++ ++.+.++
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            8899999999998887777 6777765

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.6e-28  Score=224.23  Aligned_cols=232  Identities=17%  Similarity=0.243  Sum_probs=173.9

Q ss_pred             ccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|++++|  +| ++++|++|+.|++|++||+.++......                                   
T Consensus        72 ~GH~~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-----------------------------------  114 (493)
T PTZ00421         72 LGQEGPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-----------------------------------  114 (493)
T ss_pred             eCCCCCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCcccccc-----------------------------------
Confidence            589999999999  56 7889999999999999999764311000                                   


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                        ..++..+ .+|...|.+++|+|++ .+|+++ .|++|+|||++ .++....+       .+|
T Consensus       115 ------------------~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~l-------~~h  167 (493)
T PTZ00421        115 ------------------SDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVI-------KCH  167 (493)
T ss_pred             ------------------CcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEEE-------cCC
Confidence                              0344556 7999999999999985 688998 99999999998 45555443       679


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc-ceeEEEEcCCCCEEEEe
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR  265 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~  265 (421)
                      ...|.+++|+|++ .+|++++.|++|++||+++++..    ..+..|             .+ ....+.|.+++..++++
T Consensus       168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H-------------~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEAH-------------ASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEecC-------------CCCcceEEEEcCCCCeEEEE
Confidence            9999999999999 99999999999999999987643    333332             33 34567889988777753


Q ss_pred             c-----CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCc
Q 014644          266 D-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG  339 (421)
Q Consensus       266 ~-----~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~  339 (421)
                      +     ++.|++||+++...++.....+....              +....|++++++|++++ .|+.|++||+.++. .
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~  294 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-L  294 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-e
Confidence            2     38999999986455555444333221              13567899999998887 59999999999873 3


Q ss_pred             eeEEe-cCCCCccceeeecC
Q 014644          340 GITVE-AGKNENRKPILQAA  358 (421)
Q Consensus       340 ~~~~~-~~~~~~~~~~~~~~  358 (421)
                      ...+. .+..+.+.+++.|.
T Consensus       295 ~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        295 TFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeccCCCCCcceEeccc
Confidence            33333 34556777777776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.1e-28  Score=200.86  Aligned_cols=307  Identities=13%  Similarity=0.180  Sum_probs=218.5

Q ss_pred             CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      +++-.--..|+.++.+.+|  ++||.++|||+.|-.|+|.|++..-.+.    .+.+                       
T Consensus       102 ~yEt~ylt~HK~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks----~~~e-----------------------  152 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKS----KPKE-----------------------  152 (430)
T ss_pred             ccceEEEeecccceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhc----chhh-----------------------
Confidence            4444444579999999999  8999999999999999999987421000    0000                       


Q ss_pred             eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc--eeeeeeecC
Q 014644          103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMK  179 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~  179 (421)
                                     +..-++...-..++++ -.|.++|+++.|+|....|++| .|++|+++|.....  +..++    
T Consensus       153 ---------------m~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~----  212 (430)
T KOG0640|consen  153 ---------------MISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV----  212 (430)
T ss_pred             ---------------hccCCcccCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH----
Confidence                           0000001111456777 8999999999999999999999 99999999997432  12222    


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                          -....+|.++.|+|.| .+|+.|..-.++++||+.+-+.....         .     .-..|.+.|+++.+++.|
T Consensus       213 ----~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvsa---------n-----Pd~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  213 ----FQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSA---------N-----PDDQHTGAITQVRYSSTG  273 (430)
T ss_pred             ----hhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeec---------C-----cccccccceeEEEecCCc
Confidence                2345789999999999 99999999999999999986543110         0     124568899999999999


Q ss_pred             CEEEEecC-CeEEEEECCCCCcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          260 QHLLSRDY-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      ++.++++. |.|+|||--+ ++++.++.. |.+.              .|.+..|+.+|+||++.+.|..+++|.+.++ 
T Consensus       274 ~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-  337 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG-  337 (430)
T ss_pred             cEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeecCC-
Confidence            99999986 9999999875 778777653 4432              2368899999999999999999999999998 


Q ss_pred             CceeEEecCCC-----CccceeeecCCcccccccceeeeecccCc--ccC---CCCCccccccccccCeEEEEEccCCCe
Q 014644          338 AGGITVEAGKN-----ENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN---SSSGHHELSYNLSSKLLHLAWHPTTNL  407 (421)
Q Consensus       338 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw---~~~~~~~~~~~~~~~v~~~~~spd~~~  407 (421)
                      +.+..+.|-..     .-....|...       ..++..-.....  --|   +.........+|.+.++.+.-||.++.
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNht-------EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHT-------EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCc-------cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence            44444443211     0111122221       123333222222  445   122333456789999999999999999


Q ss_pred             EEEecCC-ceEEEe
Q 014644          408 IACANGN-SLFFHY  420 (421)
Q Consensus       408 la~~~~~-~~~i~~  420 (421)
                      ++++++| +.++|+
T Consensus       411 FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  411 FMTCSDDFRARFWY  424 (430)
T ss_pred             eeeecccceeeeee
Confidence            9999965 599996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=7e-28  Score=200.31  Aligned_cols=282  Identities=13%  Similarity=0.137  Sum_probs=222.9

Q ss_pred             ccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644           88 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  166 (421)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~  166 (421)
                      .....+++++.+|+.++.++|+-  +....+|+..++   .....+ .+|...|+++.|+.+|.+||+| .+|.|+||..
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGg--DD~AflW~~~~g---e~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGG--DDLAFLWDISTG---EFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCC--CceEEEEEccCC---cceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            33457888888888888888876  457789999988   566666 8999999999999999999999 9999999999


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      .++.....+        ....+.+.-+.|+|.+ ..|++|+.||.+.+|.+.++..+    +++.+|             
T Consensus       136 stg~~~~~~--------~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~----kv~~Gh-------------  189 (399)
T KOG0296|consen  136 STGGEQWKL--------DQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALC----KVMSGH-------------  189 (399)
T ss_pred             ccCceEEEe--------ecccCceEEEEecccc-cEEEeecCCCcEEEEECCCccee----eEecCC-------------
Confidence            955544433        2344668889999998 99999999999999999986544    666664             


Q ss_pred             ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644          247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  325 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d  325 (421)
                      ..++++=.|.|+|+.++++.+ |+|++|++.+ ++++..+....+..              ..++.++..+..++.|+.+
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~--------------~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLE--------------LPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCc--------------CCccccccccceeEeccCC
Confidence            889999999999999999976 9999999997 88888887544321              1467888889999999999


Q ss_pred             CeEEEEecCCCCCceeEEe--------cCCCCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccC
Q 014644          326 NLLRIFSHGVGSAGGITVE--------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSK  395 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~  395 (421)
                      +.+++-+..++ +.+....        .+...+.++.+.|.  .  ...++.|+|+-||. .||+ ....+.....|...
T Consensus       255 ~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~~~~--s--s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~  329 (399)
T KOG0296|consen  255 GVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVESIPS--S--SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG  329 (399)
T ss_pred             ccEEEEccccc-eEEEecCCCCccccccchhhhhhhhhccc--c--cccchhhcccccceEEEEecccchhheeccCCCc
Confidence            99988887776 3333333        45555666666554  1  11568899999999 9994 44566777889999


Q ss_pred             eEEEEEccCCCeEEEecCCceEEEeC
Q 014644          396 LLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       396 v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      |+.+.|-++..+++++.++.++.|++
T Consensus       330 V~~l~w~~t~~l~t~c~~g~v~~wDa  355 (399)
T KOG0296|consen  330 VTKLKWLNTDYLLTACANGKVRQWDA  355 (399)
T ss_pred             eEEEEEcCcchheeeccCceEEeeec
Confidence            99999999554555555888999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-28  Score=225.62  Aligned_cols=238  Identities=11%  Similarity=0.173  Sum_probs=206.4

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ...+.+|..++|+|...+++++ ..|.|++||.+ .+.++.       .+.+|.++|+.++|+|++ .++++|+.|..|+
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~-------rFdeHdGpVRgv~FH~~q-plFVSGGDDykIk   76 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLID-------RFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIK   76 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHh-------hhhccCCccceeeecCCC-CeEEecCCccEEE
Confidence            4567789999999999999999 99999999999 455554       348899999999999999 8999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +|+..+.++.    ..+-             +|-..|..+.|++.-.+|++++| .+|+||++.+ .+++..+.+|.+-+
T Consensus        77 VWnYk~rrcl----ftL~-------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~iavltGHnHYV  138 (1202)
T KOG0292|consen   77 VWNYKTRRCL----FTLL-------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIAVLTGHNHYV  138 (1202)
T ss_pred             EEecccceeh----hhhc-------------cccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceEEEEecCceEE
Confidence            9999987654    3333             45889999999999999999988 9999999997 99999999999876


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC----------------------------CCceeEEe
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----------------------------SAGGITVE  344 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~----------------------------~~~~~~~~  344 (421)
                                     .+..|+|....++++|-|.+||+||+..-                            .....++.
T Consensus       139 ---------------McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  139 ---------------MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             ---------------EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence                           78999999999999999999999997631                            01245788


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC----ccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~----~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      ||.-.|+-.+|.|.       .+++++|++|+. ++|...+    ......+|...|.++-|||..+++.+.+ +..|++
T Consensus       204 GHDRGVNwaAfhpT-------lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  204 GHDRGVNWAAFHPT-------LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             ccccccceEEecCC-------cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence            99999999999998       569999999999 9995444    3456779999999999999999999999 566999


Q ss_pred             EeC
Q 014644          419 HYA  421 (421)
Q Consensus       419 ~~~  421 (421)
                      |+.
T Consensus       277 wDm  279 (1202)
T KOG0292|consen  277 WDM  279 (1202)
T ss_pred             Eec
Confidence            974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.8e-28  Score=207.57  Aligned_cols=286  Identities=17%  Similarity=0.250  Sum_probs=207.6

Q ss_pred             ccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccC
Q 014644           19 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        19 ~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      .+...++....+.|.+.|+.+++.| .+...+|+.+..+.|.|||..+..-.......+                     
T Consensus       110 ~~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~---------------------  167 (422)
T KOG0264|consen  110 AVSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC---------------------  167 (422)
T ss_pred             ccccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccC---------------------
Confidence            4555677777889999999999974 457888999999999999987644111100000                     


Q ss_pred             CCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeee
Q 014644           99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIV  176 (421)
Q Consensus        99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~  176 (421)
                                                   .+-..+ .+|...-++|+|++.. -.|+++ .|++|.+||+......-+++
T Consensus       168 -----------------------------~Pdl~L-~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~  217 (422)
T KOG0264|consen  168 -----------------------------RPDLRL-KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV  217 (422)
T ss_pred             -----------------------------CCceEE-EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence                                         222234 6888888899999853 356666 99999999998443321111


Q ss_pred             ecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          177 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                      . ....+.+|...|..++|+|....++++++.|+.+.|||+|++  ..+..+..             .+|...+++++|+
T Consensus       218 ~-p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~-------------~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  218 D-PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSV-------------KAHSAEVNCVAFN  281 (422)
T ss_pred             c-ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccc-------------cccCCceeEEEeC
Confidence            0 112358899999999999987689999999999999999973  22222333             3458999999999


Q ss_pred             CCCC-EEEEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEec
Q 014644          257 NDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       257 ~~~~-~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~  333 (421)
                      |-+. .||+|+ |++|.+||+|+-.+++..+.+|...+               +.+.|+|. ...||+++.|+.+.+||+
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEec
Confidence            9655 556776 49999999998788999999999865               89999996 567889999999999999


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEe-c
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA-N  412 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~-~  412 (421)
                      ..-+.....-.+..++                                 .|++....||...|.+++|+|..+++++. +
T Consensus       347 s~ig~eq~~eda~dgp---------------------------------pEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGP---------------------------------PELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             cccccccChhhhccCC---------------------------------cceeEEecCcccccccccCCCCCCeEEEEec
Confidence            8653322111111110                                 13445555889999999999999886544 4


Q ss_pred             -CCceEEEe
Q 014644          413 -GNSLFFHY  420 (421)
Q Consensus       413 -~~~~~i~~  420 (421)
                       ++.+.||+
T Consensus       394 eDN~LqIW~  402 (422)
T KOG0264|consen  394 EDNILQIWQ  402 (422)
T ss_pred             CCceEEEee
Confidence             55688986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=180.84  Aligned_cols=315  Identities=15%  Similarity=0.114  Sum_probs=228.5

Q ss_pred             cCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEee-ecCCCCCcccccccccccceeecc
Q 014644           20 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIK-EMDHFPFVSSENTLLAEKNFMNEH   97 (421)
Q Consensus        20 ~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~   97 (421)
                      -++.|+.+..++-+..|.+++|  +|.|.+.++|+..++.||.....-. ++.-. ....+..|.+-.---..+.|+|.+
T Consensus        19 ~k~~f~~i~~l~dsqairav~f--hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   19 EKKHFEAINILEDSQAIRAVAF--HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             cccceEEEEEecchhheeeEEe--cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence            3567999999999999999999  8999999999999999998643211 00000 000111122222222245788999


Q ss_pred             CCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC----CCCEEEEE--cCCcEEEEeCCCCce
Q 014644           98 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQ  171 (421)
Q Consensus        98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~--~d~~i~lwd~~~~~~  171 (421)
                      +++++..+++|+.+..-.+.-++.++....-.-..+ .-|.+.|+.++|..    .+.+|+++  .|..|++-|.. .++
T Consensus        97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~  174 (350)
T KOG0641|consen   97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQ  174 (350)
T ss_pred             ecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCC
Confidence            999999999999844332222344433222233345 67999999999954    36677775  78888888987 555


Q ss_pred             eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644          172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  251 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  251 (421)
                      .+..+       .+|++.|.++ ++-++ ..+++|+.|.+|++||++-.......-..+..    .      .-..+.|.
T Consensus       175 ~~~a~-------sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~----~------glessava  235 (350)
T KOG0641|consen  175 GFHAL-------SGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD----G------GLESSAVA  235 (350)
T ss_pred             cceee-------cCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccceeeeccCcccC----C------CcccceeE
Confidence            55543       8899999987 45556 89999999999999999986544221111111    0      00136799


Q ss_pred             EEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644          252 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  330 (421)
Q Consensus       252 ~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i  330 (421)
                      +++..|.|++|++|.. ....+||++- +..++.+..|...+               .++.|+|...|+++++.|..|++
T Consensus       236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEE
Confidence            9999999999999965 8899999995 99999999888754               89999999999999999999999


Q ss_pred             EecCCC---CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          331 FSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       331 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      -|++..   +....+...|.+.+-...|.|.       ...+++.+.|.+ .+|
T Consensus       300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~-------d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ-------DFSFISSSADKTATLW  346 (350)
T ss_pred             eecccchhhcCceEEEEeccCceEEEEecCc-------cceeeeccCcceEEEe
Confidence            998853   2235566788888888889887       336677788887 888

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=215.76  Aligned_cols=254  Identities=15%  Similarity=0.187  Sum_probs=174.2

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      .+++|+....   .++..+ .+|.+.|.+++|+|+ +.+|++| .|++|+|||+...+.....+......+.+|...|.+
T Consensus        55 vI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s  130 (568)
T PTZ00420         55 AIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI  130 (568)
T ss_pred             EEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence            3566665544   556667 899999999999996 7899998 999999999974332111100000134789999999


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      ++|+|++..+|++++.|++|++||+++++..    ..+..              ...|.+++|+|+|.+|++++. +.|+
T Consensus       131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~~--------------~~~V~SlswspdG~lLat~s~D~~Ir  192 (568)
T PTZ00420        131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQINM--------------PKKLSSLKWNIKGNLLSGTCVGKHMH  192 (568)
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEec--------------CCcEEEEEECCCCCEEEEEecCCEEE
Confidence            9999998445689999999999999987532    11221              457999999999999998864 9999


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC----eEEEEecCCCCCceeEEecCC
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg----~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      |||+++ ++.+..+.+|...+...          .+....|++++.+|++++.|+    .|+|||++.....+..+..+.
T Consensus       193 IwD~Rs-g~~i~tl~gH~g~~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~  261 (568)
T PTZ00420        193 IIDPRK-QEIASSFHIHDGGKNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN  261 (568)
T ss_pred             EEECCC-CcEEEEEecccCCceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence            999997 88888888887643110          012335678999999887764    799999996544444443332


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccc--cccccCeEEEEEccCCC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELS--YNLSSKLLHLAWHPTTN  406 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~--~~~~~~v~~~~~spd~~  406 (421)
                       ....+....+.+.    +.++++|..|+. ++|.. .+.+..+  ..+..++..++|.|+..
T Consensus       262 -~~~~L~p~~D~~t----g~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        262 -ASAPLIPHYDEST----GLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             -CccceEEeeeCCC----CCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence             2222221111110    237889999999 99932 2222211  23456788899999853

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.7e-29  Score=207.49  Aligned_cols=230  Identities=11%  Similarity=0.198  Sum_probs=189.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||++.|.|+.|+    .+.+++||+|.+|++||+++++                                         
T Consensus       234 ~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge-----------------------------------------  268 (499)
T KOG0281|consen  234 TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGE-----------------------------------------  268 (499)
T ss_pred             hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCc-----------------------------------------
Confidence            4899999999994    4599999999999999999864                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +++++ -+|.+.|..+.|+  ..+++++ .|.++.+||+..... ...-    ..+.+|.+
T Consensus       269 -------------------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~-it~r----rVLvGHrA  321 (499)
T KOG0281|consen  269 -------------------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD-ITLR----RVLVGHRA  321 (499)
T ss_pred             -------------------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH-HHHH----HHHhhhhh
Confidence                               44555 7899999999997  4588888 999999999984432 1110    23489999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|..+.|+.   +++++++.|.+|++|++.+....    +++.+|             ...|.++.+.  |+++++|+. 
T Consensus       322 aVNvVdfd~---kyIVsASgDRTikvW~~st~efv----Rtl~gH-------------kRGIAClQYr--~rlvVSGSSD  379 (499)
T KOG0281|consen  322 AVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNGH-------------KRGIACLQYR--DRLVVSGSSD  379 (499)
T ss_pred             heeeecccc---ceEEEecCCceEEEEeccceeee----hhhhcc-------------cccceehhcc--CeEEEecCCC
Confidence            999999984   79999999999999999997765    777765             7788888775  899999965 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC--------c
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------G  339 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~--------~  339 (421)
                      .+|++||+.. |.++..+++|+..+               .++.|  |.+.|++|.+||+|++||+..+..        .
T Consensus       380 ntIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~C  441 (499)
T KOG0281|consen  380 NTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLC  441 (499)
T ss_pred             ceEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccccCCcccccchH
Confidence            9999999996 99999999999987               78888  678899999999999999987632        2


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ...+..|.+.|..+.|..-         .+++.+.|.. -+|
T Consensus       442 l~~lv~hsgRVFrLQFD~f---------qIvsssHddtILiW  474 (499)
T KOG0281|consen  442 LRTLVEHSGRVFRLQFDEF---------QIISSSHDDTILIW  474 (499)
T ss_pred             HHhhhhccceeEEEeecce---------EEEeccCCCeEEEE
Confidence            4456678888888877654         6777777777 899

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=205.67  Aligned_cols=275  Identities=14%  Similarity=0.181  Sum_probs=207.5

Q ss_pred             cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .+.|.+++|+  |... -+|+++ .-.+.||+..+.. .+.+..  +.            ..+.+.++-.+++.++.|..
T Consensus        26 ~~~vssl~fs--p~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr--Fk------------~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   26 HNSVSSLCFS--PKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR--FK------------DVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             cCcceeEecC--CCCCCceEEec-ccEEEEEecchhhhhhhHHh--hc------------cceeEEEeecCCeEEEccCC
Confidence            4689999995  4422 344433 3479999977755 222322  22            24556667778888888765


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                        .+.++++|+.+.   ..++.+ .+|+.+|....|+|++. .+++| +|+.+++||+.+..  + .+     .+.+|++
T Consensus        89 --sG~V~vfD~k~r---~iLR~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v-~~-----~l~~htD  154 (487)
T KOG0310|consen   89 --SGHVKVFDMKSR---VILRQL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--V-QA-----ELSGHTD  154 (487)
T ss_pred             --cCcEEEeccccH---HHHHHH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--E-EE-----EecCCcc
Confidence              678999996554   567777 89999999999999655 55557 89999999998333  3 22     3589999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  268 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  268 (421)
                      .|+|.+|+|..+.++++|+.||.|++||++.....   ...+              .|..+|..+.+-|.|..|++++..
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~el--------------nhg~pVe~vl~lpsgs~iasAgGn  217 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVEL--------------NHGCPVESVLALPSGSLIASAGGN  217 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEe--------------cCCCceeeEEEcCCCCEEEEcCCC
Confidence            99999999987689999999999999999985311   1222              237899999999999999999888


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .+++||+-+.++.+..+..|...+               +|+++..++..|++|+-|+.+++||+.+.            
T Consensus       218 ~vkVWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~------------  270 (487)
T KOG0310|consen  218 SVKVWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNY------------  270 (487)
T ss_pred             eEEEEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccce------------
Confidence            999999987566666666577755               89999999999999999999999996654            


Q ss_pred             CccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  418 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i  418 (421)
                         .+.++-                                 .+.++|.+++.+||++.+++|-.|++..
T Consensus       271 ---Kvv~s~---------------------------------~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  271 ---KVVHSW---------------------------------KYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ---EEEEee---------------------------------ecccceeeEEecCCCceEEEecccceee
Confidence               122211                                 2357788899999988888888776543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3e-27  Score=213.47  Aligned_cols=287  Identities=13%  Similarity=0.142  Sum_probs=229.2

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      +.-.||...|.++++  +.+...++ ++..+.+++|+..+.+ ++++..                ..+++..+-|...++
T Consensus       367 i~~~GHR~dVRsl~v--S~d~~~~~-Sga~~SikiWn~~t~kciRTi~~----------------~y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCV--SSDSILLA-SGAGESIKIWNRDTLKCIRTITC----------------GYILASKFVPGDRYI  427 (888)
T ss_pred             eeeccchhheeEEEe--ecCceeee-ecCCCcEEEEEccCcceeEEecc----------------ccEEEEEecCCCceE
Confidence            334689999999999  34444444 4456799999999876 344322                356666777777777


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC----CceeeeeeecCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI----SDQCFNIVDMKP  180 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~----~~~~~~~~~~~~  180 (421)
                      ..|..  .+.+.++++...   ..+.+. ++|.+.|.+++.+||++.+++| .|.+|++||..-    ++...+.+.++.
T Consensus       428 v~G~k--~Gel~vfdlaS~---~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~  501 (888)
T KOG0306|consen  428 VLGTK--NGELQVFDLASA---SLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH  501 (888)
T ss_pred             EEecc--CCceEEEEeehh---hhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence            77765  456677777766   666666 7999999999999999999999 999999999641    111222222222


Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      .+.-.-.+.|.|+++|||+ ++|+.+-.|.+|++|-+.+-+..    -.             +.+|.-+|.++.++||++
T Consensus       502 ~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFf----ls-------------LYGHkLPV~smDIS~DSk  563 (888)
T KOG0306|consen  502 TRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFF----LS-------------LYGHKLPVLSMDISPDSK  563 (888)
T ss_pred             ceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeee----ee-------------ecccccceeEEeccCCcC
Confidence            2222345789999999999 99999999999999999885432    12             345689999999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      ++++|+. .+|++|-++- |.+.+.+-+|+..+               .++.|-|....+.+++.|+.|+-||-..- ..
T Consensus       564 livTgSADKnVKiWGLdF-GDCHKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~  626 (888)
T KOG0306|consen  564 LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EE  626 (888)
T ss_pred             eEEeccCCCceEEecccc-chhhhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhh-hh
Confidence            9999976 9999999985 99999999999865               79999999999999999999999998876 77


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .+.+.+|...+++++..|+       +.++++++.|.. ++|
T Consensus       627 iq~L~~H~~ev~cLav~~~-------G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  627 IQKLDGHHSEVWCLAVSPN-------GSFVVSSSHDKSIRLW  661 (888)
T ss_pred             heeeccchheeeeeEEcCC-------CCeEEeccCCceeEee
Confidence            8999999999999999999       449999999999 999

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.2e-28  Score=207.83  Aligned_cols=280  Identities=20%  Similarity=0.206  Sum_probs=210.4

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecC-CCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .|..+|+.+.|  -++...|++|+.|..|++|++..++........ ..+.+..+.+..++..+++...           
T Consensus       173 ~h~gev~~v~~--l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~-----------  239 (459)
T KOG0288|consen  173 AHEGEVHDVEF--LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN-----------  239 (459)
T ss_pred             ccccccceeEE--ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC-----------
Confidence            58899999999  477789999999999999998876632222211 2233444444444444333332           


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                         +...++|+++..   +...++ .+|++.|+++.|......+++| .|.+|++||+. ...+.+.+      +  ...
T Consensus       240 ---d~~~r~Wnvd~~---r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l--~~S  303 (459)
T KOG0288|consen  240 ---DKNLRLWNVDSL---RLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------L--PGS  303 (459)
T ss_pred             ---CCceeeeeccch---hhhhhh-cccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------c--ccc
Confidence               557899999987   788888 8999999999998877678898 99999999998 45555442      1  224


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .+..++.+  . ..++++-.|+.|++||.+.....    .....              .+.|+++..+++|..+++++- 
T Consensus       304 ~cnDI~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRD  362 (459)
T KOG0288|consen  304 QCNDIVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRD  362 (459)
T ss_pred             cccceEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCC
Confidence            45556655  3 67889999999999999987654    44444              468999999999999988764 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      .++.+.|+++ .+....+.......           --+.+.+.|||++.|+++||.||.|+||++.++ ++...+....
T Consensus       363 dtl~viDlRt-~eI~~~~sA~g~k~-----------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~  429 (459)
T KOG0288|consen  363 DTLKVIDLRT-KEIRQTFSAEGFKC-----------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLST  429 (459)
T ss_pred             Cceeeeeccc-ccEEEEeecccccc-----------ccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCC
Confidence            9999999997 66666665543221           012378999999999999999999999999998 6666666555


Q ss_pred             CC--ccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          348 NE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       348 ~~--~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .+  +.++.|.|.       +..|++.+.++. .+|
T Consensus       430 s~~aI~s~~W~~s-------G~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  430 SNAAITSLSWNPS-------GSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcceEEEEEcCC-------CchhhcccCCcceEec
Confidence            54  999999998       347888888887 887

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.9e-26  Score=213.48  Aligned_cols=231  Identities=16%  Similarity=0.141  Sum_probs=166.4

Q ss_pred             CCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      .+|.+.|++++|+| ++++|++| .|++|++||+...+. ..........+.+|...|.+++|+|++.++|++++.|++|
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            79999999999999 88999999 999999999974321 0000000013478999999999999864799999999999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      ++||+.++...    ..+..             |...|.+++|+|+|.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus       151 rIWDl~tg~~~----~~l~~-------------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~  212 (493)
T PTZ00421        151 NVWDVERGKAV----EVIKC-------------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA  212 (493)
T ss_pred             EEEECCCCeEE----EEEcC-------------CCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence            99999986533    33333             4778999999999999999876 9999999997 7788888887653


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEee----CCCeEEEEecCCCCCceeEEecCCC-CccceeeecCCccccccc
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGS----YSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRARRSSL  366 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s----~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  366 (421)
                      ..              ..+.|.+++..+++++    .|+.|++||+++..........+.. .+....|.++       .
T Consensus       213 ~~--------------~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d-------~  271 (493)
T PTZ00421        213 KS--------------QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED-------T  271 (493)
T ss_pred             cc--------------eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC-------C
Confidence            21              3678899877777654    4799999999876544444443433 3334456665       3


Q ss_pred             ceeeeec-ccCc-ccCCC--CCccccc-cccccCeEEEEEccCC
Q 014644          367 SNLTRGL-YRQA-HENSS--SGHHELS-YNLSSKLLHLAWHPTT  405 (421)
Q Consensus       367 ~~l~~g~-~d~~-~iw~~--~~~~~~~-~~~~~~v~~~~~spd~  405 (421)
                      ..|++++ .|+. ++|+.  +...... ..+...+..++|.|..
T Consensus       272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            3677766 4888 99932  2222221 2334567778888763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.3e-26  Score=204.52  Aligned_cols=239  Identities=17%  Similarity=0.226  Sum_probs=196.8

Q ss_pred             eecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC
Q 014644          132 VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  210 (421)
Q Consensus       132 ~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~  210 (421)
                      .+ .+|.+.|.+++|+|++++|+++ .|+.+++|++. ..+....+       ..|...+..+.|+|++ +.+++++.|+
T Consensus         4 ~~-~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~~l~~~~~~~   73 (289)
T cd00200           4 TL-KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTL-------KGHTGPVRDVAASADG-TYLASGSSDK   73 (289)
T ss_pred             Hh-cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEE-------ecCCcceeEEEECCCC-CEEEEEcCCC
Confidence            44 6899999999999999999999 89999999998 34333332       5688889999999998 8999999999


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcceeEEeecc
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      .|++||+..++..    ..+..             |...+.++.|+|+++++++++ ++.+++||+++ ++....+..|.
T Consensus        74 ~i~i~~~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~  135 (289)
T cd00200          74 TIRLWDLETGECV----RTLTG-------------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRGHT  135 (289)
T ss_pred             eEEEEEcCcccce----EEEec-------------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEeccCC
Confidence            9999999875432    22333             366899999999999999887 59999999985 77777777666


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccccee
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  369 (421)
                      ..+               .+++|+|+++++++++.||.|++||++++ .....+..|...+..+.+.++  +     ..+
T Consensus       136 ~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~--~-----~~l  192 (289)
T cd00200         136 DWV---------------NSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPD--G-----EKL  192 (289)
T ss_pred             CcE---------------EEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCC--c-----CEE
Confidence            543               78999999999999988999999999876 566777889899999999988  3     378


Q ss_pred             eeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          370 TRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       370 ~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ++++.++. ++|+.  +........+...+.+++|+|++.++++++ ++.+++|+.
T Consensus       193 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~  248 (289)
T cd00200         193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL  248 (289)
T ss_pred             EEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence            88888888 99943  344444447788999999999999999998 888999973

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=212.19  Aligned_cols=243  Identities=14%  Similarity=0.160  Sum_probs=194.5

Q ss_pred             eeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                      +.+..+ .+|+..|.++.|.| .+.+|+++ .|+.|+||++...+.+++++       .+|..+|..++|+++| ..+++
T Consensus       205 k~~~~~-~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-------~gH~k~Vrd~~~s~~g-~~fLS  275 (503)
T KOG0282|consen  205 KLSHNL-SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-------KGHRKPVRDASFNNCG-TSFLS  275 (503)
T ss_pred             hheeec-cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-------hcchhhhhhhhccccC-Ceeee
Confidence            345567 89999999999999 89999998 99999999998667788755       8999999999999999 99999


Q ss_pred             EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEec-CCeEEEEECCCCCccee
Q 014644          206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTPVA  283 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~i~d~~~~~~~~~  283 (421)
                      ++.|+.|++||+.+|+..    ..+..              ...++++.|.||+ +.+++|. ++.|+.||+++ ++.++
T Consensus       276 ~sfD~~lKlwDtETG~~~----~~f~~--------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvq  336 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVL----SRFHL--------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQ  336 (503)
T ss_pred             eecceeeeeeccccceEE----EEEec--------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHH
Confidence            999999999999999865    44444              5678999999998 5666664 59999999997 99998


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      .+..|-+.+               ..+.|-++|+.+++.++|++++||+.+..-........+.....++...|.     
T Consensus       337 eYd~hLg~i---------------~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-----  396 (503)
T KOG0282|consen  337 EYDRHLGAI---------------LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-----  396 (503)
T ss_pred             HHHhhhhhe---------------eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-----
Confidence            888877755               789999999999999999999999998774444455555556667777776     


Q ss_pred             cccceeeeecccCc-ccCCCCC-----ccccccccc--cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          364 SSLSNLTRGLYRQA-HENSSSG-----HHELSYNLS--SKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw~~~~-----~~~~~~~~~--~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                        ...++.-+.|.. .++....     ......+|.  +--..+.|||||.+|++|. ++.+++|+
T Consensus       397 --~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  397 --GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             --CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence              337777777776 6652211     112223443  3345789999999999999 66699996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.8e-27  Score=189.50  Aligned_cols=276  Identities=13%  Similarity=0.135  Sum_probs=204.5

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCc-eeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      +...-.-++.|.+++|+| ....+++++|.|++||+|+++.. .+.                                  
T Consensus        20 ~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------------   64 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------------   64 (347)
T ss_pred             eecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecCCccc----------------------------------
Confidence            333334468899999953 25678889999999999999873 211                                  


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                              + +.. ..|.++|.+++|+.||..+++| .|+.+++||+. .++...+        
T Consensus        65 ------------------------~-ka~-~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~~~v--------  109 (347)
T KOG0647|consen   65 ------------------------P-KAQ-QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQVSQV--------  109 (347)
T ss_pred             ------------------------c-hhh-hccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCeeee--------
Confidence                                    0 111 6789999999999999999999 99999999999 4554433        


Q ss_pred             CccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      ..|.++|..+.|-+.. ...|++||.|++|++||+|+....    ..+..              .+.+.++..-  ..++
T Consensus       110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~  169 (347)
T KOG0647|consen  110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMA  169 (347)
T ss_pred             eecccceeEEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--Ccee
Confidence            6799999999998765 138999999999999999986543    34444              3456555543  3455


Q ss_pred             EEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-Cce
Q 014644          263 LSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGG  340 (421)
Q Consensus       263 ~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~  340 (421)
                      +.+. ++.|.+|+++......+....+-..              -+++++..+|....+.|+-+|.+-|..++.+. ...
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence            5554 4899999997644433333222111              12688888887777999999999999998742 334


Q ss_pred             eEEecCCC---------CccceeeecCCcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeE
Q 014644          341 ITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       341 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~l  408 (421)
                      ..++.|+.         .|++++|.|-       ...|++.+.||. ..|+.+  ..+.....+..+|++.+|+.+|.++
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~-------hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if  308 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPV-------HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF  308 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecc-------cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence            56677763         4788999997       448999999999 999544  3445556788999999999999999


Q ss_pred             EEec
Q 014644          409 ACAN  412 (421)
Q Consensus       409 a~~~  412 (421)
                      |.+.
T Consensus       309 aYA~  312 (347)
T KOG0647|consen  309 AYAL  312 (347)
T ss_pred             EEEe
Confidence            9765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.7e-27  Score=200.08  Aligned_cols=273  Identities=18%  Similarity=0.200  Sum_probs=211.0

Q ss_pred             CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE-Eeeec----C-CCCCcccccccccccceeec
Q 014644           23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM----D-HFPFVSSENTLLAEKNFMNE   96 (421)
Q Consensus        23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~----~-~~~~v~~~~~~~~~~~~~~~   96 (421)
                      ..++..-..|.-+|.++.+  +++..+.++++.|++|.=|++.++... .+...    . +..+.. ...-.+.+.++++
T Consensus       132 s~~~~~~~~H~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k-~~r~~h~keil~~  208 (479)
T KOG0299|consen  132 SSDFRVIGKHQLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLK-ESRKGHVKEILTL  208 (479)
T ss_pred             cccceeeccccCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCC-cccccccceeEEE
Confidence            3444555679999999999  789999999999999999999988722 11111    0 111000 0001335678999


Q ss_pred             cCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeee
Q 014644           97 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  175 (421)
Q Consensus        97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~  175 (421)
                      +.++++.++++|..  +..+.+|+..+.   +.++.+ .+|.+.|.+++|-.....|.++ .|++|++|+++ ....+. 
T Consensus       209 avS~Dgkylatgg~--d~~v~Iw~~~t~---ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve-  280 (479)
T KOG0299|consen  209 AVSSDGKYLATGGR--DRHVQIWDCDTL---EHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE-  280 (479)
T ss_pred             EEcCCCcEEEecCC--CceEEEecCccc---chhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-
Confidence            99999999999987  567899999998   888888 9999999999998877778887 99999999998 444444 


Q ss_pred             eecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644          176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  255 (421)
                            ++.+|++.|.++.-..-+ +.+-.|+.|+++++|++.....     .++.+             +.+.+.+++|
T Consensus       281 ------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lifrg-------------~~~sidcv~~  335 (479)
T KOG0299|consen  281 ------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIFRG-------------GEGSIDCVAF  335 (479)
T ss_pred             ------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----eeeeC-------------CCCCeeeEEE
Confidence                  458999999999887776 6666667999999999965331     34444             3678999999


Q ss_pred             cCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          256 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       256 s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      -. ...+++|++ |.|.+|++.+ .+++.+.....+..+.+.....+   +++++++..|...++++|+.+|.|++|.+.
T Consensus       336 In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  336 IN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEec
Confidence            85 557888877 9999999986 88888777655554443222333   577999999999999999999999999999


Q ss_pred             CC
Q 014644          335 VG  336 (421)
Q Consensus       335 ~~  336 (421)
                      .+
T Consensus       411 ~g  412 (479)
T KOG0299|consen  411 DG  412 (479)
T ss_pred             CC
Confidence            87

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=188.41  Aligned_cols=248  Identities=14%  Similarity=0.119  Sum_probs=193.7

Q ss_pred             cCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEEEEEcCC
Q 014644          134 PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRG  210 (421)
Q Consensus       134 ~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~d~  210 (421)
                      ..+|.+.|.++...--|+.||++ .|++|+|+.++.+++....     .++.+|.++|+.++|..  .| .+|++++.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg   80 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG   80 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence            37899999999888889999999 9999999999966642322     25699999999999965  56 9999999999


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec-CCeEEEEECCCCCc--ceeEE
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD-YMNLKLWDIRMDST--PVATF  285 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~~~i~i~d~~~~~~--~~~~~  285 (421)
                      .|.||.-.+++-.  ....+             ..|...|++++|.|.  |-.|++++ ||.|.|.+.+..+.  ..+..
T Consensus        81 kVIiWke~~g~w~--k~~e~-------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   81 KVIIWKEENGRWT--KAYEH-------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             eEEEEecCCCchh--hhhhh-------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence            9999998887432  12223             445899999999996  55666664 59999999986522  23334


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCC---C-----------CEEEEeeCCCeEEEEecCCCC-CceeEEecCCCCc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNEN  350 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~-----------~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~  350 (421)
                      ..|...+               .+++|.|.   |           +.|++|+.|..|+||+...+. .+..+|++|.+.|
T Consensus       146 ~aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV  210 (299)
T KOG1332|consen  146 FAHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV  210 (299)
T ss_pred             hcccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence            5566544               78999985   4           569999999999999998764 2356699999999


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCCCCCc-----cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-----~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +.++++|...-   +...||+++.||. -||+.++.     ...+..+...+..++||+.|++||+++ ++++.+|.
T Consensus       211 RDVAwaP~~gl---~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  211 RDVAWAPSVGL---PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhhhccccCC---CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            99999998421   2468999999999 99933322     122345778899999999999999887 66799984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=186.06  Aligned_cols=222  Identities=18%  Similarity=0.296  Sum_probs=186.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|..+|..++-  +.|...|++|+.|+.|.+||+++++                                         
T Consensus        56 sghG~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGk-----------------------------------------   92 (307)
T KOG0316|consen   56 SGHGHEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGK-----------------------------------------   92 (307)
T ss_pred             cCCCceeeeccc--cccccccccCCCCceEEEEEcccCe-----------------------------------------
Confidence            378999999998  6788899999999999999999975                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~  187 (421)
                                         ..+.+ .+|.+.|+.++|+.+...+++| .|.++++||.+... ++++++       ....
T Consensus        93 -------------------v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-------dea~  145 (307)
T KOG0316|consen   93 -------------------VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-------DEAK  145 (307)
T ss_pred             -------------------eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-------hhhc
Confidence                               33445 8999999999999999999999 99999999998432 344443       5667


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      +.|.++..+.   ..|++|+.||++|.||++.|+..    ..+-+               .+|+++.|++|++..++++.
T Consensus       146 D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  146 DGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             CceeEEEecc---cEEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeec
Confidence            8899998774   66999999999999999998754    23333               48999999999999888875


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                       +++++.|-.+ ++.++.+++|....+++             .+++......+++||+||.|++||+... .....+..+
T Consensus       204 ~stlrLlDk~t-GklL~sYkGhkn~eykl-------------dc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~  268 (307)
T KOG0316|consen  204 DSTLRLLDKET-GKLLKSYKGHKNMEYKL-------------DCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVV  268 (307)
T ss_pred             cceeeecccch-hHHHHHhcccccceeee-------------eeeecccceeEEeccCCceEEEEEeccc-eeeeeeccC
Confidence             9999999987 99999999998765443             6788888889999999999999999987 666677777


Q ss_pred             CCC-ccceeeecC
Q 014644          347 KNE-NRKPILQAA  358 (421)
Q Consensus       347 ~~~-~~~~~~~~~  358 (421)
                      ... +..+.+.|.
T Consensus       269 ~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  269 STVIVTDLSCHPT  281 (307)
T ss_pred             CceeEEeeecccC
Confidence            666 788888887

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.4e-26  Score=231.21  Aligned_cols=243  Identities=15%  Similarity=0.110  Sum_probs=188.6

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..|.+.|.+++|+|++++|++| .|++|+||+.................+. +...+.+++|+|....+|++++.||+|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            4589999999999999999999 9999999998621100000000000112 3467899999986448999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      +||+.+++..    ..+..             |...|.+++|+| ++.+|++++. +.|++||+++ +..+..+..+.. 
T Consensus       559 lWd~~~~~~~----~~~~~-------------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~~~~-  619 (793)
T PLN00181        559 VWDVARSQLV----TEMKE-------------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKTKAN-  619 (793)
T ss_pred             EEECCCCeEE----EEecC-------------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEecCCC-
Confidence            9999876533    33334             488999999997 7889999876 9999999986 777777664432 


Q ss_pred             ccccccccCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceee
Q 014644          292 RPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLT  370 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  370 (421)
                      +               .++.|+ +++.+|++|+.||.|++||+++.......+.+|...+..+.|...        ..|+
T Consensus       620 v---------------~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~--------~~lv  676 (793)
T PLN00181        620 I---------------CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS--------STLV  676 (793)
T ss_pred             e---------------EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC--------CEEE
Confidence            2               688885 579999999999999999998765456788899999999999632        2799


Q ss_pred             eecccCc-ccCCCC--------CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          371 RGLYRQA-HENSSS--------GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       371 ~g~~d~~-~iw~~~--------~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +++.|+. ++|+..        ..+....+|...+..++|+|++++||+|+ ++.+++|+
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            9999999 999432        23445668888999999999999999999 56699996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=4.2e-27  Score=196.65  Aligned_cols=252  Identities=17%  Similarity=0.258  Sum_probs=199.1

Q ss_pred             cccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           29 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ..||.++|.++.|....+ ...|++++.|.++++|.++.++...                                    
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~------------------------------------  183 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV------------------------------------  183 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh------------------------------------
Confidence            468999999999963222 4579999999999999998765110                                    


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeec-------
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM-------  178 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~-------  178 (421)
                                          ++++.- .||...|.+++..++|..+++| .|.+|++|+..... ..+.-...       
T Consensus       184 --------------------~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  184 --------------------KALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             --------------------hHHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence                                222222 6999999999999999999999 99999999933110 00100000       


Q ss_pred             ---------CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccc
Q 014644          179 ---------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  249 (421)
Q Consensus       179 ---------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  249 (421)
                               ...++.+|.++|.++.|++.  ..+++++.|.+|+.||+.+++..    ..+..              ...
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~~--------------~ks  302 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK----STLTT--------------NKS  302 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce----eeeec--------------Ccc
Confidence                     01346899999999999994  68999999999999999998755    22222              457


Q ss_pred             eeEEEEcCCCCEEEEecC-CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCC
Q 014644          250 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYS  325 (421)
Q Consensus       250 v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~d  325 (421)
                      ..++..+|..++|++|+. ..|++||.++..  -+...+.+|..++               .++.|+|.. ..|++|+.|
T Consensus       303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  303 LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecC
Confidence            899999999999999865 999999998743  3456788999876               799999964 458899999


Q ss_pred             CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          326 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      +++++||+++.......+.+|.+.|.++.|...        ..+++|+.|.+ +|+
T Consensus       368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~--------~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG--------GLIVSGGADNKLRIF  415 (423)
T ss_pred             CeEEEEEeccCCCcceeeccCCceEEEEeccCC--------ceEEeccCcceEEEe
Confidence            999999999987789999999999999988754        27999999998 887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2e-26  Score=205.90  Aligned_cols=234  Identities=17%  Similarity=0.179  Sum_probs=186.9

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      .+.|+++.|+++|.+|+.| .+|.|.|||.. ..+..+       ++.+ |...|.+++|+.   ..+.+|+.|+.|..+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~-------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTR-------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNH  285 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccc-------cccCCcCceeEEEeccC---ceEEEecCCCcEEEE
Confidence            7789999999999999999 99999999998 333333       3356 999999999993   679999999999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      |++..+...   ..+.             +|...|..++|++|+.++|+|+. +.+.|||... .++...+..|...+  
T Consensus       286 dvR~~~~~~---~~~~-------------~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAV--  346 (484)
T KOG0305|consen  286 DVRISQHVV---STLQ-------------GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAV--  346 (484)
T ss_pred             EEecchhhh---hhhh-------------cccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceee--
Confidence            999875431   2233             45899999999999999999865 9999999965 78888898998865  


Q ss_pred             cccccCCCcceeeeEEEEcC-CCCEEEEee--CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644          295 LCDLYNNDSIFDKFECSVSG-DGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                                   ..++|+| ....||+|+  .|+.|++||..++... ..+ --...|..+.|++..  +   .-....
T Consensus       347 -------------KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-~~v-dtgsQVcsL~Wsk~~--k---Ei~sth  406 (484)
T KOG0305|consen  347 -------------KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-DSV-DTGSQVCSLIWSKKY--K---ELLSTH  406 (484)
T ss_pred             -------------eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-ccc-ccCCceeeEEEcCCC--C---EEEEec
Confidence                         7899999 567788765  5999999999987332 222 234678899999872  2   112233


Q ss_pred             ecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          372 GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       372 g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      |..+.. .||  .....+....+|..+|..++++|||..+++|+ +.+|++|+.
T Consensus       407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            444555 899  44567778889999999999999999999998 677999973

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=9.4e-26  Score=209.86  Aligned_cols=234  Identities=17%  Similarity=0.230  Sum_probs=167.4

Q ss_pred             ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|.+++|  +|+ +.+|++|+.|++|+|||+.++..... .  .                               
T Consensus        71 ~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~--i-------------------------------  114 (568)
T PTZ00420         71 KGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVK-E--I-------------------------------  114 (568)
T ss_pred             cCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-c--c-------------------------------
Confidence            479999999999  565 78999999999999999976421000 0  0                               


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                        ..++..+ .+|...|.+++|+|++..+ +++ .|++|++||+++ ++....+       . |
T Consensus       115 ------------------~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i-------~-~  166 (568)
T PTZ00420        115 ------------------KDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQI-------N-M  166 (568)
T ss_pred             ------------------ccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEE-------e-c
Confidence                              0223345 7899999999999998765 577 899999999984 4433332       2 4


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce-----eEEEEcCCCCE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDGQH  261 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~  261 (421)
                      ...|.+++|+|+| .+|++++.|+.|++||++++...    ..+..|             .+.+     ....|++++.+
T Consensus       167 ~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~gH-------------~g~~~s~~v~~~~fs~d~~~  228 (568)
T PTZ00420        167 PKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHIH-------------DGGKNTKNIWIDGLGGDDNY  228 (568)
T ss_pred             CCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEE----EEEecc-------------cCCceeEEEEeeeEcCCCCE
Confidence            5779999999999 99999999999999999987644    334443             3332     33456689888


Q ss_pred             EEEec-C----CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE-cCCCCEEEEeeCCCeEEEEecCC
Q 014644          262 LLSRD-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       262 l~~~~-~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      |++++ +    ++|+|||++..+.++..+..+.... .             ....| .++|.++++|+.|+.|++|++..
T Consensus       229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~-~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA-P-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc-c-------------eEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            88753 3    3799999986567776665444321 0             11233 44689999999999999999987


Q ss_pred             CCCceeEEecCCCCccceeeecCC
Q 014644          336 GSAGGITVEAGKNENRKPILQAAP  359 (421)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~  359 (421)
                      +......-..+..+.+.++|.|.+
T Consensus       295 ~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        295 GSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CcEEeecccccCCCccceEEcccc
Confidence            622222222355778888988874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=8.2e-27  Score=185.62  Aligned_cols=235  Identities=16%  Similarity=0.122  Sum_probs=193.2

Q ss_pred             eeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          131 KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       131 ~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      +.+ ++|...|.+++|+.+|..|++| .|+++.+|+++. .....     .....+|.+.|-.++|+|..+.++++++.|
T Consensus        14 r~~-~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~-~r~~~-----~~~~~gh~~svdql~w~~~~~d~~atas~d   86 (313)
T KOG1407|consen   14 REL-QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLER-DRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFATASGD   86 (313)
T ss_pred             HHh-hhhhhcceEEEEcccCceeeecccCCceEEEEecc-hhhhh-----hhcccCCCcchhhheeCCCCCcceEEecCC
Confidence            444 7899999999999999999999 999999999983 33222     135588999999999999988999999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      .+|++||++.++.+    .....              ...-.-+.|+|+|++++.++. ..|.+.|.++ .+.+...+-.
T Consensus        87 k~ir~wd~r~~k~~----~~i~~--------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~~~~~~~  147 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCT----ARIET--------------KGENINITWSPDGEYIAVGNKDDRITFIDART-YKIVNEEQFK  147 (313)
T ss_pred             ceEEEEEeccCcEE----EEeec--------------cCcceEEEEcCCCCEEEEecCcccEEEEEecc-cceeehhccc
Confidence            99999999998765    22222              344567899999999999876 8999999986 5554444322


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccce
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  368 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (421)
                      ..                +..++|+.++.+++.....|.|.|...... +.+..+++|....-++.|.|+  |+     +
T Consensus       148 ~e----------------~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~--Gr-----y  203 (313)
T KOG1407|consen  148 FE----------------VNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPD--GR-----Y  203 (313)
T ss_pred             ce----------------eeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCC--Cc-----e
Confidence            22                257889877888777777899999998865 678999999999999999998  55     9


Q ss_pred             eeeecccCc-ccCCCCCcccc--ccccccCeEEEEEccCCCeEEEecCCc
Q 014644          369 LTRGLYRQA-HENSSSGHHEL--SYNLSSKLLHLAWHPTTNLIACANGNS  415 (421)
Q Consensus       369 l~~g~~d~~-~iw~~~~~~~~--~~~~~~~v~~~~~spd~~~la~~~~~~  415 (421)
                      ||+|+.|.. .+|+.++++..  ...+.-+|+.++||-||++||+|+.|.
T Consensus       204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence            999999999 99988887664  346778999999999999999999764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=212.82  Aligned_cols=269  Identities=14%  Similarity=0.199  Sum_probs=222.0

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      +...+.+..|  .  ...+++++.|++|++||..++.                                           
T Consensus       207 ~~~~~~~~q~--~--~~~~~~~s~~~tl~~~~~~~~~-------------------------------------------  239 (537)
T KOG0274|consen  207 DDHVVLCLQL--H--DGFFKSGSDDSTLHLWDLNNGY-------------------------------------------  239 (537)
T ss_pred             Ccchhhhhee--e--cCeEEecCCCceeEEeecccce-------------------------------------------
Confidence            4567778887  3  6789999999999999988764                                           


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                      .+...+ .||.+.|.++++..-+.+|++| .|.++++||.. .+++..++       .+|.+.|
T Consensus       240 ----------------~i~~~l-~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l-------~gh~stv  294 (537)
T KOG0274|consen  240 ----------------LILTRL-VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSL-------QGHTSSV  294 (537)
T ss_pred             ----------------EEEeec-cCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEe-------cCCCceE
Confidence                            222224 7999999999998878899999 89999999988 78888876       7999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      .++...+   ..+++|+.|.+|++|++.++...    +++.+             |..+|.++..+  +.++++|+. ++
T Consensus       295 ~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l----~l~~~-------------h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  295 RCLTIDP---FLLVSGSRDNTVKVWDVTNGACL----NLLRG-------------HTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             EEEEccC---ceEeeccCCceEEEEeccCcceE----EEecc-------------ccccEEEEEec--CCEEEEEecCce
Confidence            9988665   56888999999999999987654    55554             48899999998  788998876 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  349 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  349 (421)
                      |++||+.+ +++++.+.+|...+               .++.+.+. ..+++|+.|+.|++||+.+......++++|..-
T Consensus       353 v~VW~~~~-~~cl~sl~gH~~~V---------------~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~  415 (537)
T KOG0274|consen  353 VKVWDPRT-GKCLKSLSGHTGRV---------------YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL  415 (537)
T ss_pred             EEEEEhhh-ceeeeeecCCcceE---------------EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence            99999996 99999999999876               67777554 889999999999999999876788999999999


Q ss_pred             ccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccc-cccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~-~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      +..+.+...         .|.+++.|+. ++|  ..++......+ +...|..+++. +..+|+++.++.+.+|+.
T Consensus       416 v~~l~~~~~---------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  416 VSSLLLRDN---------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             ccccccccc---------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEec
Confidence            987777655         8999999999 999  45555555555 56888888887 444555555778999973

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.3e-27  Score=198.58  Aligned_cols=276  Identities=17%  Similarity=0.198  Sum_probs=204.4

Q ss_pred             ccccccEEEEEEEEcCCC-CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~-~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      -||.+.|.+++=  +|.. ..+++|+.||.|+|||+.+.+...... .|.+.|..+++.            . ..++..|
T Consensus        63 ~gHrdGV~~lak--hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~------------~-~~~~tvg  126 (433)
T KOG0268|consen   63 DGHRDGVSCLAK--HPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVT------------Q-TSFFTVG  126 (433)
T ss_pred             cccccccchhhc--CcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEec------------c-cceEEec
Confidence            389999999998  6765 789999999999999998866222211 133344333222            2 1122221


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                         .+.+++.|.++.    .+++++  .-...+..+.-+..+..++|+ .  .|-|||.. ...+++.+       .-..
T Consensus       127 ---dDKtvK~wk~~~----~p~~ti--lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-R~~Pv~sm-------swG~  187 (433)
T KOG0268|consen  127 ---DDKTVKQWKIDG----PPLHTI--LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-RDNPVSSM-------SWGA  187 (433)
T ss_pred             ---CCcceeeeeccC----Ccceee--eccccccccccccccccccccCc--eeeecccc-cCCcccee-------ecCC
Confidence               245788887765    366666  234557777777667777776 4  48899987 44444432       4456


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      +.|.++.|+|.....|+++..|+.|.+||++++....+...                  .-..+.|+|+|.+-.++++++
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL------------------TMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee------------------eccccceecCccccceeeccc
Confidence            77999999999877888888999999999999876633222                  235589999997766777765


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                       ..++.||++.-..++..+.+|...+               .++.|+|.|+-+++||.|.+|+||.++.+..........
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR  314 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR  314 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence             9999999998778888888888765               899999999999999999999999998774333333444


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      -..|.++.|+.+       ..++.+|++|+. ++|
T Consensus       315 Mq~V~~Vk~S~D-------skyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  315 MQHVFCVKYSMD-------SKYIISGSDDGNVRLW  342 (433)
T ss_pred             hheeeEEEEecc-------ccEEEecCCCcceeee
Confidence            567889999988       449999999999 999

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=188.11  Aligned_cols=302  Identities=13%  Similarity=0.189  Sum_probs=228.1

Q ss_pred             eccccccCCCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccc
Q 014644           14 KTEFQSHEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN   92 (421)
Q Consensus        14 ~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   92 (421)
                      +..|..-...|...+.+ ||.+.|..++-  ......+.+++.|.+.+||.++++                         
T Consensus       128 vssFk~~t~~~~lvre~~GHkDGiW~Vaa--~~tqpi~gtASADhTA~iWs~Esg-------------------------  180 (481)
T KOG0300|consen  128 VSSFKDGTVKFRLVRELEGHKDGIWHVAA--DSTQPICGTASADHTARIWSLESG-------------------------  180 (481)
T ss_pred             eeeecCCceeEeehhhhcccccceeeehh--hcCCcceeecccccceeEEeeccc-------------------------
Confidence            33444444455555544 68888888877  455668888888888888888775                         


Q ss_pred             eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC-----
Q 014644           93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL-----  166 (421)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~-----  166 (421)
                                                         .|+..| .||.+.|+++.|++.+.+++++ .|++..||..     
T Consensus       181 -----------------------------------~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  181 -----------------------------------ACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             -----------------------------------cceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence                                               666777 8999999999999999999999 9999999972     


Q ss_pred             -CCC--------ceee------------------eeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644          167 -EIS--------DQCF------------------NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       167 -~~~--------~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                       ..+        ++..                  ..+.+....+.+|.+.|.+..|...| +.+++++.|.+..+||+.+
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt  303 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET  303 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc
Confidence             110        0000                  01222224568899999999999998 9999999999999999999


Q ss_pred             ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccc
Q 014644          220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  298 (421)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  298 (421)
                      +...    ..+.+             |....+-++-+|..+++++.+. .+.++||++..-..+..|++|...+      
T Consensus       304 ge~v----~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV------  360 (481)
T KOG0300|consen  304 GEVV----NILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV------  360 (481)
T ss_pred             Ccee----ccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce------
Confidence            8765    55555             4888999999999999998875 9999999986556788899999876      


Q ss_pred             cCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-
Q 014644          299 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-  377 (421)
Q Consensus       299 ~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-  377 (421)
                               +++.|.-+.+ +++|++|.+|++||+++-...+.++. -.++++.++.+..       ...++...++.. 
T Consensus       361 ---------TS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g-------~~iIAiPhDNRqv  422 (481)
T KOG0300|consen  361 ---------TSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG-------HPIIAIPHDNRQV  422 (481)
T ss_pred             ---------eEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC-------CceEEeccCCceE
Confidence                     8899987755 78999999999999998755555554 3466777777766       226788888888 


Q ss_pred             ccCCCC-Cccc-----cccccccCeEEEEEccC---CCeEEEecCCceEEEe
Q 014644          378 HENSSS-GHHE-----LSYNLSSKLLHLAWHPT---TNLIACANGNSLFFHY  420 (421)
Q Consensus       378 ~iw~~~-~~~~-----~~~~~~~~v~~~~~spd---~~~la~~~~~~~~i~~  420 (421)
                      ++++.. ..+.     ...+|..-|.+++|..+   .+++.+|-+..+.-|+
T Consensus       423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             EEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence            999443 2222     23478889999999544   5666666676677775

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.5e-27  Score=207.39  Aligned_cols=241  Identities=18%  Similarity=0.238  Sum_probs=194.5

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      .+++++|+||+.||.|++|++......       .+                                            
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~-------~s--------------------------------------------   62 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNE-------PS--------------------------------------------   62 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCC-------cc--------------------------------------------
Confidence            366889999999999999998764310       00                                            


Q ss_pred             cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEE-ecCCC
Q 014644          124 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF-HPIYC  200 (421)
Q Consensus       124 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~  200 (421)
                         ..++..+ +.|.+.|+.++...+++.|+++ .|-+|++|+..... .+.++       +..|.+.|.|+++ .++. 
T Consensus        63 ---~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st-------ir~H~DYVkcla~~ak~~-  130 (735)
T KOG0308|consen   63 ---TPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST-------IRTHKDYVKCLAYIAKNN-  130 (735)
T ss_pred             ---cchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh-------hhcccchheeeeecccCc-
Confidence               0123334 7899999999999999999998 99999999998443 34444       4889999999999 6676 


Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      .++|+|+.|+.|.+||+..+...  ....++.    ........++...|.+++..+.|..|++|+- +.+++||.++ .
T Consensus       131 ~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt-~  203 (735)
T KOG0308|consen  131 ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT-C  203 (735)
T ss_pred             eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc-c
Confidence            89999999999999999987420  0111111    1111112267889999999999988888865 9999999998 8


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP  359 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (421)
                      +.+..+++|...+               ..+-.++||..++++|.||+|++||+... ....++..|...|.++..+++ 
T Consensus       204 ~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~s-  266 (735)
T KOG0308|consen  204 KKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPS-  266 (735)
T ss_pred             cceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCC-
Confidence            8888899999876               78899999999999999999999999876 778889999999999999887 


Q ss_pred             cccccccceeeeecccCc
Q 014644          360 RARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       360 ~~~~~~~~~l~~g~~d~~  377 (421)
                            ...+.+|+.||.
T Consensus       267 ------f~~vYsG~rd~~  278 (735)
T KOG0308|consen  267 ------FTHVYSGGRDGN  278 (735)
T ss_pred             ------cceEEecCCCCc
Confidence                  669999999997

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1e-25  Score=191.40  Aligned_cols=276  Identities=17%  Similarity=0.147  Sum_probs=218.0

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      ..++++..+  +..+.+++|+.|.++.++|...++                                             
T Consensus       220 pgi~ald~~--~s~~~ilTGG~d~~av~~d~~s~q---------------------------------------------  252 (506)
T KOG0289|consen  220 PGITALDII--PSSSKILTGGEDKTAVLFDKPSNQ---------------------------------------------  252 (506)
T ss_pred             CCeeEEeec--CCCCcceecCCCCceEEEecchhh---------------------------------------------
Confidence            457777774  447889999999999999987753                                             


Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                                     .+.++ .||...|..+.++|+...++++ .|..|++|.... ......       ...|.++|+.
T Consensus       253 ---------------~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~-------~~~h~~~V~~  308 (506)
T KOG0289|consen  253 ---------------ILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTS-------SRPHEEPVTG  308 (506)
T ss_pred             ---------------hhhhc-cCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCccc-------ccccccccee
Confidence                           34445 8999999999999999999998 999999999873 333322       3779999999


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      +..+|.| .+|++++.|++..+.|++++.........               ...-.+++.+|+|||..+.+|.. +.++
T Consensus       309 ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  309 LSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDE---------------TSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             eeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeec---------------cccceeEEeeEcCCceEEeccCCCceEE
Confidence            9999999 99999999999999999998654211110               01346899999999999999976 9999


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcc
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  351 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  351 (421)
                      |||+.. +..+..|.+|.+.+               ..++|+.+|-||+++++|+.|++||++..............++.
T Consensus       373 iwdlks-~~~~a~Fpght~~v---------------k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  373 IWDLKS-QTNVAKFPGHTGPV---------------KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             EEEcCC-ccccccCCCCCCce---------------eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence            999986 77889999999876               89999999999999999999999999987433333333445788


Q ss_pred             ceeeecCCcccccccceeeeecccCc-ccCC----CCCccccccccccCeEEEEEccCCCeEEEecCCc-eEEE
Q 014644          352 KPILQAAPRARRSSLSNLTRGLYRQA-HENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFH  419 (421)
Q Consensus       352 ~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~i~  419 (421)
                      ++.|...  |.     +|+.++.+-. .+..    ....+.....|.+..+.+.|....+++++++-|. ++++
T Consensus       437 s~~fD~S--Gt-----~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  437 SLSFDQS--GT-----YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eEEEcCC--CC-----eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            8888877  44     8888866655 4442    2234455556777888999999999999999655 5554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-25  Score=201.31  Aligned_cols=241  Identities=19%  Similarity=0.256  Sum_probs=188.3

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ++.|+++.|  +++|.+|++|..+|.|.|||..+.+..+.....|...|-+++|.              ...+..|+.  
T Consensus       217 ~~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--------------~~~lssGsr--  278 (484)
T KOG0305|consen  217 EELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--------------SSVLSSGSR--  278 (484)
T ss_pred             CCceEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--------------CceEEEecC--
Confidence            789999999  79999999999999999999887663333232244434444433              223333333  


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      ++.+..+|+....  ....++ .+|...|-.+.|++|+.++|+| .|+.+.|||.......++        +..|.++|.
T Consensus       279 ~~~I~~~dvR~~~--~~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aAVK  347 (484)
T KOG0305|consen  279 DGKILNHDVRISQ--HVVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAAVK  347 (484)
T ss_pred             CCcEEEEEEecch--hhhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------Eeccceeee
Confidence            4456666666542  222235 8999999999999999999999 999999999963333333        278999999


Q ss_pred             EEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c--
Q 014644          192 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D--  266 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~--  266 (421)
                      .++|+|-...+||+|+  .|+.|++||..++...    .....              ...|..+.|++..+-|+++ +  
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCC
Confidence            9999998778999876  8999999999988755    33443              5789999999998777765 2  


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++.|.||++.+ .+.+..+.+|...+               ..++++|||..+++|+.|.++++|++-..
T Consensus       410 ~n~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence            38999999987 78888899999865               79999999999999999999999998764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.4e-25  Score=182.20  Aligned_cols=290  Identities=16%  Similarity=0.199  Sum_probs=195.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +.||..|+|++.|++|+||++.+.+.+.-                                     
T Consensus        83 KgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-------------------------------------  123 (420)
T KOG2096|consen   83 KGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH-------------------------------------  123 (420)
T ss_pred             hccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh-------------------------------------
Confidence            489999999999  79999999999999999999987441110                                     


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCce---eeeeeecCCCCC-
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ---CFNIVDMKPSNM-  183 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~---~~~~~~~~~~~~-  183 (421)
                                        ++++.-  -.-+..+.++|+||.+-++.+  ...++++|.+.....   ....+......+ 
T Consensus       124 ------------------r~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~  183 (420)
T KOG2096|consen  124 ------------------RCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFE  183 (420)
T ss_pred             ------------------hHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccc
Confidence                              111111  111245778999998877664  777899998752211   111110000011 


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      +.|+..+..+-..-++ .+|++++.|..|.+|+++ |+..    ..++.             ........+.||+|++++
T Consensus       184 ~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq~~n~~aavSP~GRFia  244 (420)
T KOG2096|consen  184 RKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQSSNYDAAVSPDGRFIA  244 (420)
T ss_pred             hhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------ccccccceeeCCCCcEEE
Confidence            3466677777777776 999999999999999998 5443    22222             133456788999999999


Q ss_pred             EecC-CeEEEEECCC--CC-----cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          264 SRDY-MNLKLWDIRM--DS-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      ++.- ..+++|..--  .+     ..+..+++|...+               ..++|+|+++.+++.|.||+++|||.+-
T Consensus       245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             EecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            9876 8899998731  12     2345678888865               8999999999999999999999999764


Q ss_pred             CC------Ccee----EEecCCCCccceeeecCCcccccccceeeeecccCcccC--CCCCcccc-ccccccCeEEEEEc
Q 014644          336 GS------AGGI----TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHEL-SYNLSSKLLHLAWH  402 (421)
Q Consensus       336 ~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~~~~~~~~-~~~~~~~v~~~~~s  402 (421)
                      ..      ..+.    .+..-.+.--.+..+|.  +.     .||.......+++  ..++.... -.-|...|.+++|+
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~--g~-----~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS--GD-----SLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCC--Cc-----EEEeecCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence            21      1111    11111222225566666  33     5655554444555  22322222 23578899999999


Q ss_pred             cCCCeEEEecCCceEEE
Q 014644          403 PTTNLIACANGNSLFFH  419 (421)
Q Consensus       403 pd~~~la~~~~~~~~i~  419 (421)
                      |+|+++|++++..++++
T Consensus       383 ~~g~~~atcGdr~vrv~  399 (420)
T KOG2096|consen  383 SDGKYIATCGDRYVRVI  399 (420)
T ss_pred             CCCcEEeeecceeeeee
Confidence            99999999998777765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=8.4e-26  Score=195.94  Aligned_cols=298  Identities=13%  Similarity=0.103  Sum_probs=210.3

Q ss_pred             cccceeeccCCCCceeeeecccccccceeEEeecccc-eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644           89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  166 (421)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~  166 (421)
                      ..+.|.++.+.+.+..+++|+.  +..+++||..... ..+.-+.+.......|++++|++.|..|++. .....+|+|-
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~--Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSL--DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             CceEEEEeeecCCCceeeeccc--cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            3456788999999999999998  6689999987532 2233444445667789999999999888886 8888999998


Q ss_pred             CCCceeeeeeecCC-----CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcc
Q 014644          167 EISDQCFNIVDMKP-----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  241 (421)
Q Consensus       167 ~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  241 (421)
                      + +.+..+.....+     .+-.+|...++|.+|+|.....+++++.||++|+||+......   .+++.....      
T Consensus       244 d-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~~------  313 (641)
T KOG0772|consen  244 D-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKPA------  313 (641)
T ss_pred             C-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeeccC------
Confidence            7 544444332111     2337899999999999998789999999999999999875422   222222000      


Q ss_pred             cccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC-cc-eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644          242 FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS-TP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  318 (421)
Q Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  318 (421)
                        .+..-+++.++|+|||++||+|.. |.|.+|+..... .+ ...-.+|....             ++++++||+||++
T Consensus       314 --~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~-------------~Itsi~FS~dg~~  378 (641)
T KOG0772|consen  314 --GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ-------------DITSISFSYDGNY  378 (641)
T ss_pred             --CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC-------------ceeEEEeccccch
Confidence              122457899999999999999865 999999986421 12 22233454422             3489999999999


Q ss_pred             EEEeeCCCeEEEEecCCCCCceeEEecCC--CCccceeeecCCcccccccceeeeecccC----c-ccC--CCC--Cccc
Q 014644          319 FATGSYSNLLRIFSHGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYRQ----A-HEN--SSS--GHHE  387 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~d~----~-~iw--~~~--~~~~  387 (421)
                      |++-+.|+++++||++...+.+.+..+-.  .+-..++|+|+       ..+|++|..--    . .|+  +..  +...
T Consensus       379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd-------~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD-------DKLILTGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC-------ceEEEecccccCCCCCceEEEEeccceeeEE
Confidence            99999999999999998766655555443  34567889998       23677764221    1 233  211  2222


Q ss_pred             cccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          388 LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       388 ~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .+.-....|..+.|||.-+.|.+|+ ++++++|+
T Consensus       452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            2222366788999999977766666 67788875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=8e-25  Score=178.49  Aligned_cols=264  Identities=13%  Similarity=0.155  Sum_probs=199.1

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ++.|.+|+|  ++.++.|++++.||++++||+...+++                                          
T Consensus        13 ~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------------   48 (323)
T KOG1036|consen   13 EDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------------   48 (323)
T ss_pred             hhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhh------------------------------------------
Confidence            567899999  577888999999999999999875311                                          


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                        ..  -.|..++.+++|.++ ..+++| -||.|+++|+.+ +....        +..|..+|.
T Consensus        49 ------------------~~--~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~-~~~~~--------igth~~~i~   98 (323)
T KOG1036|consen   49 ------------------LK--FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT-GNEDQ--------IGTHDEGIR   98 (323)
T ss_pred             ------------------hh--eecCCceeeeeccCC-ceEEEeccCceEEEEEecC-Cccee--------eccCCCceE
Confidence                              11  367889999999974 466666 999999999994 33332        267999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i  270 (421)
                      |+.+++.. ..+++|+.|++|++||.+.....    ..++.              ...|.++..+  |..|+.| .+..+
T Consensus        99 ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~----~~~d~--------------~kkVy~~~v~--g~~LvVg~~~r~v  157 (323)
T KOG1036|consen   99 CIEYSYEV-GCVISGSWDKTIKFWDPRNKVVV----GTFDQ--------------GKKVYCMDVS--GNRLVVGTSDRKV  157 (323)
T ss_pred             EEEeeccC-CeEEEcccCccEEEEeccccccc----ccccc--------------CceEEEEecc--CCEEEEeecCceE
Confidence            99999887 89999999999999999974322    22222              3467777766  6667665 45999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC---CCceeEEecCC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGITVEAGK  347 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~  347 (421)
                      .+||+++-..+.+.-  .....+            -++++++-|++.-.+++|-||.|.+=.++..   +.....+..|.
T Consensus       158 ~iyDLRn~~~~~q~r--eS~lky------------qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr  223 (323)
T KOG1036|consen  158 LIYDLRNLDEPFQRR--ESSLKY------------QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR  223 (323)
T ss_pred             EEEEcccccchhhhc--ccccee------------EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence            999998744443221  111111            1278999998888899999999988666554   13355666664


Q ss_pred             ---------CCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEec
Q 014644          348 ---------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       348 ---------~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                               .||++++|+|-       ...|++|+.||. .+|+.  ...+..+..+...|..++|+-||..||+++
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~-------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPI-------HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             cccCCceEEEEeceeEeccc-------cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence                     47899999988       348999999999 99944  345666667788899999999999999997

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=2.3e-26  Score=181.94  Aligned_cols=205  Identities=16%  Similarity=0.246  Sum_probs=171.3

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      +.+.+++|+--|.+++|  +.|.++|+||+.++.+||+|++..+                                    
T Consensus        92 delhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~------------------------------------  133 (334)
T KOG0278|consen   92 DELHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPK------------------------------------  133 (334)
T ss_pred             hhhhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCC------------------------------------
Confidence            56778899999999999  7899999999999999999998754                                    


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                             .+.+.+ .+|.+.|+.+-|....+.|+++ +|++||+||.+ .+..++.+.      
T Consensus       134 -----------------------App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL~------  182 (334)
T KOG0278|consen  134 -----------------------APPKEI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSLE------  182 (334)
T ss_pred             -----------------------CCchhh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEEe------
Confidence                                   222334 7999999999999988899997 99999999999 566666552      


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                        ...+|.++..+++| .+ ++....+.|.+||..+-.++    +.+..              ...|.+...+|+...++
T Consensus       183 --~~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  183 --FNSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFV  240 (334)
T ss_pred             --cCCCCcceeeccCC-CE-EEEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEE
Confidence              34679999999998 54 45566788999999986654    44444              56789999999988888


Q ss_pred             EecC-CeEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +|+. ..++.||..+ ++.+..+ ++|.+++               .++.|+|+|..-++||+||+|+||.+..+
T Consensus       241 aGged~~~~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ecCcceEEEEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCC
Confidence            8866 9999999998 7777665 7887766               89999999999999999999999998876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.9e-24  Score=176.02  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=214.4

Q ss_pred             ccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E--cCCcEEEEeC
Q 014644           90 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A--DDLRINLWNL  166 (421)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~--~d~~i~lwd~  166 (421)
                      ...+.++.++.++..+...+.  +..+++++...+   ..++++ ..+...|..+.|......++. +  .|.+|+..++
T Consensus        14 ~~~i~sl~fs~~G~~litss~--dDsl~LYd~~~g---~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSE--DDSLRLYDSLSG---KQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             CCceeEEEecCCCCEEEEecC--CCeEEEEEcCCC---ceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            456777788788877777433  557899999888   888888 777778988999665555444 3  5999999999


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      . ..+.++.+       .||...|.+++.+|-+ ..+++++.|++|++||++..+..    ..+..              
T Consensus        88 ~-dNkylRYF-------~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~--------------  140 (311)
T KOG1446|consen   88 H-DNKYLRYF-------PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL--------------  140 (311)
T ss_pred             e-cCceEEEc-------CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------
Confidence            8 67778766       8999999999999998 99999999999999999965432    22221              


Q ss_pred             ccceeEEEEcCCCCEEEEecC-CeEEEEECCCC-CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                       ..-..++|+|.|-++|++.. ..|++||++.- +.+..++........            +...+.|||||++|+.++.
T Consensus       141 -~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  141 -SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             -CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeC
Confidence             23467899999999999977 69999999874 566666655422111            1278999999999999999


Q ss_pred             CCeEEEEecCCCCCceeEEecCCCCc---cceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccc-cccCeE
Q 014644          325 SNLLRIFSHGVGSAGGITVEAGKNEN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLL  397 (421)
Q Consensus       325 dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~-~~~~v~  397 (421)
                      .+.+++.|.-+| .....+.++...-   -...|+|+       ..++.+|+.||. .+|  ..+.......+ +..++.
T Consensus       208 ~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPd-------s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~  279 (311)
T KOG1446|consen  208 ASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPD-------SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS  279 (311)
T ss_pred             CCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCC-------CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence            999999999888 5677777776554   45677888       449999999999 999  55556666666 578899


Q ss_pred             EEEEccCCCeEEEecCCceEEE
Q 014644          398 HLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       398 ~~~~spd~~~la~~~~~~~~i~  419 (421)
                      ++.|+|...++|+++. .+.+|
T Consensus       280 ~~~fnP~~~mf~sa~s-~l~fw  300 (311)
T KOG1446|consen  280 CVRFNPRYAMFVSASS-NLVFW  300 (311)
T ss_pred             ccccCCceeeeeecCc-eEEEE
Confidence            9999999988888775 45555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=4.5e-25  Score=184.41  Aligned_cols=230  Identities=19%  Similarity=0.216  Sum_probs=176.1

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      .+.+.|.+.|+.++-.+-.+..++++-+..|.|+||++...- +.+.......                           
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~~~~~~~---------------------------  196 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALSEPGLEV---------------------------  196 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhcCccccc---------------------------
Confidence            346788888888888544567788888999999999986531 1111100000                           


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                                  -+    ...+++.++ .+|...=+.|+|||- .-.|++| .-+.|++|...++.-.+.     +..+.
T Consensus       197 ------------~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~  254 (440)
T KOG0302|consen  197 ------------KD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----QRPFT  254 (440)
T ss_pred             ------------cc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeeccCceeec-----Ccccc
Confidence                        00    112677777 899999999999993 2357888 788999999985433332     23457


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      +|+..|..++|+|.....|++||.||+|+|||+|.+....  ...             .+.|.+.|+.|.|+.+..+||+
T Consensus       255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~-------------~kAh~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVS-------------TKAHNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeE-------------eeccCCceeeEEccCCcceeee
Confidence            7999999999999988899999999999999999873210  111             1445889999999998889999


Q ss_pred             ecC-CeEEEEECCC--CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCC
Q 014644          265 RDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       265 ~~~-~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |+| |+++|||++.  .++++..|+.|..++               +++.|+|. ...|++++.|..|.|||+...
T Consensus       320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             cCCCceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            988 9999999985  367899999999877               89999995 567888999999999999864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=196.01  Aligned_cols=336  Identities=13%  Similarity=0.171  Sum_probs=230.4

Q ss_pred             EEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc---c
Q 014644           37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---T  111 (421)
Q Consensus        37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~  111 (421)
                      -++.|  ++....|...-.|+.++|||+++-.  .+......|...|+++.-.+      +--..+..+.++-+.+   .
T Consensus       328 IA~~F--det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------~nv~~~~~aclp~~cF~TCS  399 (1080)
T KOG1408|consen  328 IACQF--DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------CNVHSPTAACLPRGCFTTCS  399 (1080)
T ss_pred             eEEEe--cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc------ccccCcccccCCccceeEec
Confidence            34556  6778889899999999999998754  23333334555555443221      1112234455555555   3


Q ss_pred             cccceeEEeecccceeeeee-------------------e--------e------cCCCCcceEEEeecCCCCEEEEE-c
Q 014644          112 ENMATKIANVGNSVHARCQK-------------------V--------Y------PHAHDFNINSISNNSDCETFVSA-D  157 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~-------------------~--------~------~~~h~~~v~~l~~~~~~~~l~s~-~  157 (421)
                      +++++|+|+++.....+..+                   .        +      .-+....+++++.+|+|++||+| .
T Consensus       400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr  479 (1080)
T KOG1408|consen  400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR  479 (1080)
T ss_pred             CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence            45699999988632222211                   0        0      01123468999999999999999 9


Q ss_pred             CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeEEEEEcCCeEEEEECCcccccccchhhhccccc
Q 014644          158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  235 (421)
Q Consensus       158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~  235 (421)
                      -|++++|++. .-+...       .++.|...|.|+.|+--  +.++|++++.|..|.+||+...-..   ...+..   
T Consensus       480 ~GnlrVy~Lq-~l~~~~-------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld~---  545 (1080)
T KOG1408|consen  480 GGNLRVYDLQ-ELEYTC-------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---VQTLDG---  545 (1080)
T ss_pred             cCceEEEEeh-hhhhhh-------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---hhhhcc---
Confidence            9999999998 333332       34889999999999842  2478999999999999998764322   244444   


Q ss_pred             cCCCcccccccccceeEEEEcCCC--CEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE
Q 014644          236 SHGSKSFFTEIIASISDIKFANDG--QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  312 (421)
Q Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (421)
                                |...|+++.|..+|  ..++++ .|..| .|+..........+..|.....       ...+   ++++.
T Consensus       546 ----------HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~-------ktTl---YDm~V  604 (1080)
T KOG1408|consen  546 ----------HSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLS-------KTTL---YDMAV  604 (1080)
T ss_pred             ----------cccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccc-------cceE---EEeee
Confidence                      58999999999877  455554 44443 4444321222223333333221       1122   68999


Q ss_pred             cCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC-ccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccc
Q 014644          313 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE-NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL  388 (421)
Q Consensus       313 sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~  388 (421)
                      .|..+++++++.|..|+||+++.+ +..+.+.+..+. -.-+....+..|.     +|++.+.|.. .++  ..+|.+..
T Consensus       605 dp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgi-----Y~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  605 DPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGI-----YLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             CCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCcc-----EEEEeecCCceEEEEeccchhhhh
Confidence            999999999999999999999998 556666554433 3334444443244     9999999999 776  67899999


Q ss_pred             ccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          389 SYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       389 ~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ..+|...|+.+.|.+|.+.|++++ ++.|++|..
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            999999999999999999988777 677999963

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=8.2e-25  Score=196.18  Aligned_cols=378  Identities=12%  Similarity=0.119  Sum_probs=236.5

Q ss_pred             ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCC-CCCccccc-----------------ccccc
Q 014644           30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSEN-----------------TLLAE   90 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~-~~~v~~~~-----------------~~~~~   90 (421)
                      -||..+|+|+.|+|..+ ...+++|+.|++|++|.++.....++....+ ..++.|+.                 |....
T Consensus        51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~  130 (764)
T KOG1063|consen   51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQ  130 (764)
T ss_pred             cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCC
Confidence            48999999999975433 3389999999999999999655555555444 22222211                 11101


Q ss_pred             ccee---------------eccCCC-Ccee-eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC---
Q 014644           91 KNFM---------------NEHNPP-SFAH-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---  150 (421)
Q Consensus        91 ~~~~---------------~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---  150 (421)
                      ..+.               |++..+ ...+ ++.|+.  ...+.+..-. ....+.+..+ .||.+.|++++|...+   
T Consensus       131 ~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--~~~v~~~s~~-~d~f~~v~el-~GH~DWIrsl~f~~~~~~~  206 (764)
T KOG1063|consen  131 DEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--KFVVDLYSSS-ADSFARVAEL-EGHTDWIRSLAFARLGGDD  206 (764)
T ss_pred             CceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc--ceEEEEeccC-CcceeEEEEe-eccchhhhhhhhhccCCCc
Confidence            1111               111111 1111 111111  1133333333 2234556677 8999999999997643   


Q ss_pred             CEEEEE-cCCcEEEEeCCCCce--------------------eeeeee--cC-CCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          151 ETFVSA-DDLRINLWNLEISDQ--------------------CFNIVD--MK-PSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~~--------------------~~~~~~--~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      -+|+++ .|..||||.+...+.                    ....+.  +. ...+.+|.+.|+++.|+|.+ ..|+++
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSA  285 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSA  285 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheec
Confidence            367777 999999998763330                    000000  00 02345999999999999998 899999


Q ss_pred             EcCCeEEEEECCccccc----------c------------c------------chhhhccc-cccCCCccccccccccee
Q 014644          207 SSRGFVRLVDMRQSALC----------D------------H------------SARILRDA-AESHGSKSFFTEIIASIS  251 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~----------~------------~------------~~~~~~~h-~~~~~~~~~~~~~~~~v~  251 (421)
                      +.|.++.+|......-+          .            .            -.+.|... ...........+|...|.
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~  365 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK  365 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence            99999999976653110          0            0            00011100 000011233578899999


Q ss_pred             EEEEcCCCCEEEEec-CCeEEEEECCCCC----------------------------------cceeEEeeccC------
Q 014644          252 DIKFANDGQHLLSRD-YMNLKLWDIRMDS----------------------------------TPVATFKIHEH------  290 (421)
Q Consensus       252 ~~~~s~~~~~l~~~~-~~~i~i~d~~~~~----------------------------------~~~~~~~~~~~------  290 (421)
                      .++|+|.|++|++.+ |.+-|+|-.-..+                                  +.++.|+.+..      
T Consensus       366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~  445 (764)
T KOG1063|consen  366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLM  445 (764)
T ss_pred             eeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHH
Confidence            999999999998764 4666665432000                                  01111110000      


Q ss_pred             -----------------cccc------------------------------ccccc---------------C----CCcc
Q 014644          291 -----------------LRPK------------------------------LCDLY---------------N----NDSI  304 (421)
Q Consensus       291 -----------------~~~~------------------------------~~~~~---------------~----~~~~  304 (421)
                                       .++.                              .+.+.               +    ...-
T Consensus       446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG  525 (764)
T KOG1063|consen  446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG  525 (764)
T ss_pred             HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence                             0000                              00000               0    2223


Q ss_pred             eeeeEEEEcCCCCEEEEeeCC-----CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-c
Q 014644          305 FDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H  378 (421)
Q Consensus       305 ~~~~~~~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~  378 (421)
                      |+|++++.+|+++++|+++..     ..|++|+..+. ...+.+++|.-.|+.++|+|+  ++     +|++.++|+. .
T Consensus       526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpd--g~-----~LLsvsRDRt~s  597 (764)
T KOG1063|consen  526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPD--GR-----YLLSVSRDRTVS  597 (764)
T ss_pred             eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCC--Cc-----EEEEeecCceEE
Confidence            347999999999999998754     46999999887 556689999999999999999  55     9999999999 9


Q ss_pred             cCCCCCc------cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          379 ENSSSGH------HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       379 iw~~~~~------~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +|...+.      ......|+.-|++++|+||..++|++| +..+.+|.
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            9933321      223567889999999999999999999 55688884

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-24  Score=173.95  Aligned_cols=229  Identities=13%  Similarity=0.126  Sum_probs=192.2

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      +||..+++.+.++.+|.+|+++ .|.+..+|--. +++.+-+       ..+|++.|+|+..+-+. ..+++|+.|.+++
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGt-------y~GHtGavW~~Did~~s-~~liTGSAD~t~k   77 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGT-------YDGHTGAVWCCDIDWDS-KHLITGSADQTAK   77 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeee-------ecCCCceEEEEEecCCc-ceeeeccccceeE
Confidence            7999999999999999999999 99999999875 4555544       38999999999999998 9999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC------CeEEEEECCCC------Ccc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------MNLKLWDIRMD------STP  281 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~i~i~d~~~~------~~~  281 (421)
                      +||+.+|+..    ..+..              ..+|..+.|+++|.+++...+      +.|.++|++..      .++
T Consensus        78 LWDv~tGk~l----a~~k~--------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep  139 (327)
T KOG0643|consen   78 LWDVETGKQL----ATWKT--------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP  139 (327)
T ss_pred             EEEcCCCcEE----EEeec--------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence            9999999865    45555              678999999999998886532      67999999832      345


Q ss_pred             eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc
Q 014644          282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  361 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (421)
                      +..+..+...+               +.+-|+|-+++|++|.+||.|.+||++++...+...+.|...++.+.++++   
T Consensus       140 ~~kI~t~~ski---------------t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d---  201 (327)
T KOG0643|consen  140 YLKIPTPDSKI---------------TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD---  201 (327)
T ss_pred             eEEecCCccce---------------eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC---
Confidence            55665555443               789999999999999999999999999997778888899999999999999   


Q ss_pred             cccccceeeeecccCc-ccCCCCCcc-ccccccccCeEEEEEccCCCeEEEec
Q 014644          362 RRSSLSNLTRGLYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       362 ~~~~~~~l~~g~~d~~-~iw~~~~~~-~~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                          ..++++++.|.. ++|+...+. ........+|++.+++|-...++.|+
T Consensus       202 ----~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  202 ----RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG  250 (327)
T ss_pred             ----cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence                349999999999 999554332 23334578999999999988888776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.6e-25  Score=181.32  Aligned_cols=249  Identities=17%  Similarity=0.208  Sum_probs=196.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|.++|+++.|  +|....|++|+.|++|+++|+.....+                                       
T Consensus       169 YDH~devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saK---------------------------------------  207 (430)
T KOG0640|consen  169 YDHVDEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAK---------------------------------------  207 (430)
T ss_pred             hhccCcccceee--cchhheEEeccCCCeEEEEecccHHHH---------------------------------------
Confidence            479999999999  788999999999999999998764311                                       


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        +..+.+  ....+|+++.|+|.|.+|+.| +--++++||++ .-+++-...    .-.+|++
T Consensus       208 ------------------rA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsan----Pd~qht~  262 (430)
T KOG0640|consen  208 ------------------RAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSAN----PDDQHTG  262 (430)
T ss_pred             ------------------HHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeecC----ccccccc
Confidence                              111222  445689999999999999999 88899999999 556554321    2367999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc-ccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      .|+++.+++.+ ++.++++.||.|++||=-+++.+    ..+.. |            ....|.+..|..+|+|+++.+.
T Consensus       263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~AH------------~gsevcSa~Ftkn~kyiLsSG~  325 (430)
T KOG0640|consen  263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGNAH------------GGSEVCSAVFTKNGKYILSSGK  325 (430)
T ss_pred             ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHhhc------------CCceeeeEEEccCCeEEeecCC
Confidence            99999999999 99999999999999998777655    33332 1            1358999999999999998765


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCccc-ccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCceeEEe
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRP-KLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~  344 (421)
                       ..+++|.+.+ +.++..+.+...... ...           +...|.....|++.-.+ .+.+.-||.++..+....-.
T Consensus       326 DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~r-----------tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl  393 (430)
T KOG0640|consen  326 DSTVKLWEIST-GRMLKEYTGAGTTGRQKHR-----------TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL  393 (430)
T ss_pred             cceeeeeeecC-CceEEEEecCCcccchhhh-----------hhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence             9999999997 999988877532110 000           34567766777666554 57789999999866667778


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      +|.+.++.+..+|.       .+.+.+++.|.. +.|
T Consensus       394 gHn~a~R~i~HSP~-------~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  394 GHNGAVRWIVHSPV-------EPAFMTCSDDFRARFW  423 (430)
T ss_pred             CCCCCceEEEeCCC-------CCceeeecccceeeee
Confidence            99999999999998       447899999988 999

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-24  Score=176.73  Aligned_cols=234  Identities=13%  Similarity=0.181  Sum_probs=186.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|..+|++++.    ++.++|+||.|.+|+|||+....                                          
T Consensus        41 aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~------------------------------------------   74 (362)
T KOG0294|consen   41 AHAGSITALAV----SGPYVASGSSDETIHIYDMRKRK------------------------------------------   74 (362)
T ss_pred             ccccceeEEEe----cceeEeccCCCCcEEEEeccchh------------------------------------------
Confidence            68999999998    37899999999999999998743                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC--EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        .+..+ -.|.+.|+++.|.+.-.  .|++| +||.|.+|+.. .-.++..+       .+|.
T Consensus        75 ------------------qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~sl-------K~H~  127 (362)
T KOG0294|consen   75 ------------------QLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSL-------KAHK  127 (362)
T ss_pred             ------------------hhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeee-------cccc
Confidence                              11122 47899999999988764  78888 99999999998 56666654       8999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      +.|+.++.+|.+ ++.++.+.|+.+++||+-.++..    .....              ....+.+.|+|.|.+++....
T Consensus       128 ~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  128 GQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             cccceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEec
Confidence            999999999999 99999999999999999887643    22222              234556999999998888777


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      ..|-+|.+.+ ......+......                .++.|- ++..|++|.+|+.|.+||-+.. .....+.+|.
T Consensus       189 ~~i~i~q~d~-A~v~~~i~~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~  249 (362)
T KOG0294|consen  189 NKIDIYQLDN-ASVFREIENPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHE  249 (362)
T ss_pred             cEEEEEeccc-HhHhhhhhccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecch
Confidence            7899999986 4444443332211                344443 5778999999999999998875 7788999999


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ..|..+.+-....+.     +|++.+.||. ++|
T Consensus       250 ~RVK~i~~~~~~~~~-----~lvTaSSDG~I~vW  278 (362)
T KOG0294|consen  250 NRVKDIASYTNPEHE-----YLVTASSDGFIKVW  278 (362)
T ss_pred             hheeeeEEEecCCce-----EEEEeccCceEEEE
Confidence            999999976553333     9999999999 999

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4e-25  Score=202.89  Aligned_cols=208  Identities=21%  Similarity=0.366  Sum_probs=165.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||.+.|.++.|   ...++|+++|+|+|||||++...                                          
T Consensus       366 ~GHt~DILDlSW---SKn~fLLSSSMDKTVRLWh~~~~------------------------------------------  400 (712)
T KOG0283|consen  366 KGHTADILDLSW---SKNNFLLSSSMDKTVRLWHPGRK------------------------------------------  400 (712)
T ss_pred             hccchhheeccc---ccCCeeEeccccccEEeecCCCc------------------------------------------
Confidence            589999999999   34589999999999999998763                                          


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        .|++.|  .|.+-|+|++|+| |.+++++| -|+.|+||++. ..+.+.-        ..-.
T Consensus       401 ------------------~CL~~F--~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~-d~~Vv~W--------~Dl~  451 (712)
T KOG0283|consen  401 ------------------ECLKVF--SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS-DKKVVDW--------NDLR  451 (712)
T ss_pred             ------------------ceeeEE--ecCCeeEEEEecccCCCcEeecccccceEEeecC-cCeeEee--------hhhh
Confidence                              667777  8999999999999 78899999 99999999998 4443322        3344


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEe
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR  265 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~  265 (421)
                      .-|++++|.|+| +..+.|+.+|.+++|++...++.    ..+..+.....    -..|. .|+++.|.|..  +.|++.
T Consensus       452 ~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~----~~~~I~~~~~K----k~~~~-rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  452 DLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLV----SDFHIRLHNKK----KKQGK-RITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             hhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEE----EeeeEeeccCc----cccCc-eeeeeEecCCCCCeEEEec
Confidence            789999999999 99999999999999999886543    22222100000    01123 79999999853  377777


Q ss_pred             cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      .|..|||||.+. ..++..|++.......             ....|+.||++|+++++|..|+||++..
T Consensus       522 nDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  522 NDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            789999999985 8888889887665422             3789999999999999999999999743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9.1e-25  Score=195.95  Aligned_cols=270  Identities=12%  Similarity=0.099  Sum_probs=212.9

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.+.|..++.   .++..++++|.||++++|+-..++....                                      
T Consensus        12 gH~~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~~~~l~~--------------------------------------   50 (745)
T KOG0301|consen   12 GHKSDVRAVAV---TDGVCIISGSRDGTVKVWAKKGKQYLET--------------------------------------   50 (745)
T ss_pred             cCccchheeEe---cCCeEEeecCCCCceeeeeccCcccccc--------------------------------------
Confidence            46666777777   5567899999999999999755441111                                      


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEE-EeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                          ..+ .+|.+-|.. +++-+ ++-.|++| .|.+|.+|... +...+.       ++.+|.
T Consensus        51 --------------------~~~-~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-~~~P~~-------~LkgH~  101 (745)
T KOG0301|consen   51 --------------------HAF-EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-QAEPLY-------TLKGHK  101 (745)
T ss_pred             --------------------eec-ccCcceeeccceeccccCcceEeecccceEEEEecC-CCCchh-------hhhccc
Confidence                                112 456666655 66664 44457777 99999999998 455554       458999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~  266 (421)
                      ..|.|+....++ . +++||.|.++++|....-.      ..+.+             |...|.+++.-|++ .+++| .
T Consensus       102 snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~l~g-------------H~asVWAv~~l~e~-~~vTgsa  159 (745)
T KOG0301|consen  102 SNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YSLQG-------------HTASVWAVASLPEN-TYVTGSA  159 (745)
T ss_pred             cceeeeecCCcC-c-eEecccccceEEecchhhh------cccCC-------------cchheeeeeecCCC-cEEeccC
Confidence            999999988776 4 9999999999999865421      33444             58999999999988 55565 4


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      |.+|++|.-   ++.++++.+|...+               +++++-+++. +++++.||.|++|++.  +..+..+.+|
T Consensus       160 DKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~~-flScsNDg~Ir~w~~~--ge~l~~~~gh  218 (745)
T KOG0301|consen  160 DKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDSH-FLSCSNDGSIRLWDLD--GEVLLEMHGH  218 (745)
T ss_pred             cceeeeccC---Cchhhhhccchhhe---------------eeeEEecCCC-eEeecCCceEEEEecc--Cceeeeeecc
Confidence            599999984   78899999999876               7889887754 6799999999999994  3788999999


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ++-+.++...++       ...+++.+.|++ +||..++....+.-....|+++.+-++|.+++.+|++.++||.
T Consensus       219 tn~vYsis~~~~-------~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT  286 (745)
T KOG0301|consen  219 TNFVYSISMALS-------DGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT  286 (745)
T ss_pred             ceEEEEEEecCC-------CCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence            999999996555       348999999999 9997776666665556799999999999999888999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.5e-25  Score=189.21  Aligned_cols=289  Identities=15%  Similarity=0.120  Sum_probs=221.1

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      ..++.+.|.+-|.++..  +...+++.||+. |-|+|||+....        ...+|..+.....+..++++...++++.
T Consensus       411 rq~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg--------~k~PvsqLdcl~rdnyiRSckL~pdgrt  479 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPG--------NKSPVSQLDCLNRDNYIRSCKLLPDGRT  479 (705)
T ss_pred             HhhhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCC--------CCCccccccccCcccceeeeEecCCCce
Confidence            45567899999999999  566778888875 789999997643        2223333334445667888999999998


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      +..|..  ..++.|||+..... .....+ ..-.-...+|+.+||.+..+++ .||.|.|||+. +...++.       +
T Consensus       480 LivGGe--astlsiWDLAapTp-rikael-tssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------f  547 (705)
T KOG0639|consen  480 LIVGGE--ASTLSIWDLAAPTP-RIKAEL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------F  547 (705)
T ss_pred             EEeccc--cceeeeeeccCCCc-chhhhc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------c
Confidence            888877  56889999986511 111122 3333457889999999999999 99999999999 6667765       4


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      .+|++.+.|+..+++| ..|-+|+.|.+||.||++.++..    ...+-              .+.|.++..+|++.+++
T Consensus       548 qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrql----qqhdF--------------~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL----QQHDF--------------SSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh----hhhhh--------------hhhheecccCCCcccee
Confidence            9999999999999999 99999999999999999998643    11111              45799999999999999


Q ss_pred             EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                      .|-. +.+.+-...  +.....+..|+..+               .++.|++-|+++++.+.|+.+-.|...-+      
T Consensus       609 vGMens~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyG------  665 (705)
T KOG0639|consen  609 VGMENSNVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYG------  665 (705)
T ss_pred             eecccCcEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccc------
Confidence            9976 778777764  44445566666654               79999999999999999999999987766      


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY  420 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i~~  420 (421)
                               .-.|...                                 -..+|+++..|.|.++|++|+.+ .-.+|.
T Consensus       666 ---------asiFqsk---------------------------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  666 ---------ASIFQSK---------------------------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             ---------cceeecc---------------------------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence                     1122111                                 14678999999999999999966 455553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=9.5e-25  Score=205.55  Aligned_cols=263  Identities=13%  Similarity=0.151  Sum_probs=200.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|...|+|++|  ++||.+||+||.|+.|.||+...........  .                             .  
T Consensus        66 ~~h~~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fg--s-----------------------------~--  110 (942)
T KOG0973|consen   66 DDHDGSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFG--S-----------------------------T--  110 (942)
T ss_pred             ccccCceeEEEE--CCCCCeEeeccCcceEEEeeecccCCccccc--c-----------------------------c--
Confidence            368999999999  8999999999999999999976411000000  0                             0  


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                         +   ..-+.+..   ++...+ .+|...|..++|+|++.+|+++ .|++|.+||..+ .+..+++       .+|..
T Consensus       111 ---g---~~~~vE~w---k~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl-------~~H~s  172 (942)
T KOG0973|consen  111 ---G---GAKNVESW---KVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVL-------RGHQS  172 (942)
T ss_pred             ---c---ccccccee---eEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeee-------ecccc
Confidence               0   01111112   677777 8999999999999999999998 999999999984 4666654       89999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  266 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  266 (421)
                      .|..+.|.|-| ++|++-+.|++|++|++.+-...    +.+..+ ...      .........+.|||||++|++..  
T Consensus       173 ~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~p-f~~------~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  173 LVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKP-FEE------SPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             cccceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccc-hhh------CCCcceeeecccCCCcCeecchhhc
Confidence            99999999999 99999999999999997764432    222221 000      00134678999999999999852  


Q ss_pred             --C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-----CC------------EEEEeeCCC
Q 014644          267 --Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFATGSYSN  326 (421)
Q Consensus       267 --~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~------------~l~~~s~dg  326 (421)
                        . ..+.|.+-.+ .+.-..+-+|..++               ..+.|+|.     .+            .+|+|+.|+
T Consensus       241 n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  241 NGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             cCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence              2 6788988765 66677888999876               67788771     12            678999999


Q ss_pred             eEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          327 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       327 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      +|-||......++....+-....|..+.|+|+  |.     .|...+.||. .+.
T Consensus       305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd--G~-----~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD--GF-----SLFACSLDGTVALI  352 (942)
T ss_pred             cEEEEecCCCCchhhhhhhhcCceeeeeEcCC--CC-----eEEEEecCCeEEEE
Confidence            99999987665555566666788999999999  44     8888999998 555

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.4e-23  Score=184.82  Aligned_cols=325  Identities=12%  Similarity=0.073  Sum_probs=232.1

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      ..+|.+++|  +...+.||.+-.||.|.||++..+- +++......            ++.+.++++...++.+..|.  
T Consensus        25 Ps~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~------------drsIE~L~W~e~~RLFS~g~--   88 (691)
T KOG2048|consen   25 PSEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE------------DRSIESLAWAEGGRLFSSGL--   88 (691)
T ss_pred             ccceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeEEEecCC------------CCceeeEEEccCCeEEeecC--
Confidence            678999999  5778889999999999999998865 333333333            34455555544444443332  


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                       .+.+.-||+.+.   +.+..+ ....+.|.+++.+|.++.++.| +||.+...+..+..-..+.      .+...+++|
T Consensus        89 -sg~i~EwDl~~l---k~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRv  157 (691)
T KOG2048|consen   89 -SGSITEWDLHTL---KQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRV  157 (691)
T ss_pred             -CceEEEEecccC---ceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceE
Confidence             456888999988   777777 7788999999999999999999 9998888887733323322      234456899


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      .+++|+|++ ..|+.|+.||.|++||...+....-....+..    -.     +....-|.++.|-.++ .|++|+. |+
T Consensus       158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----l~-----k~~~~iVWSv~~Lrd~-tI~sgDS~G~  226 (691)
T KOG2048|consen  158 LSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR----LS-----KREPTIVWSVLFLRDS-TIASGDSAGT  226 (691)
T ss_pred             EEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccc----cc-----cCCceEEEEEEEeecC-cEEEecCCce
Confidence            999999999 89999999999999999987644200011111    00     1124467888888665 7788866 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC---ceeEEecC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA---GGITVEAG  346 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~  346 (421)
                      |.+||... +..++.+..|...+               .+++.++++.++++++.|+.|..+...+...   ....-..|
T Consensus       227 V~FWd~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h  290 (691)
T KOG2048|consen  227 VTFWDSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH  290 (691)
T ss_pred             EEEEcccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence            99999986 99999998888854               8999999999999999999999998877644   23334567


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-c------------------------------------------cCCCC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-H------------------------------------------ENSSS  383 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~------------------------------------------iw~~~  383 (421)
                      ...+++++..+.         .|.+|+.|.. .                                          +|..+
T Consensus       291 ~hdvrs~av~~~---------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG  361 (691)
T KOG2048|consen  291 AHDVRSMAVIEN---------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG  361 (691)
T ss_pred             cccceeeeeecc---------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc
Confidence            777778777665         4555555543 2                                          22111


Q ss_pred             Cc----------ccc-ccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          384 GH----------HEL-SYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       384 ~~----------~~~-~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ..          +.. ...-...|.+.+.||||++||.+.-..++||.
T Consensus       362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~  409 (691)
T KOG2048|consen  362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR  409 (691)
T ss_pred             CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence            00          000 01223467889999999999999977777764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1.8e-24  Score=200.66  Aligned_cols=230  Identities=16%  Similarity=0.251  Sum_probs=191.7

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..||.+.|.++++.  ..+.+|++|+.|.++++||+.++                                         
T Consensus       245 l~GH~g~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg-----------------------------------------  281 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFP--SGGDKLVSGSTDKTERVWDCSTG-----------------------------------------  281 (537)
T ss_pred             ccCCCCCceeEEEe--cCCCEEEEEecCCcEEeEecCCC-----------------------------------------
Confidence            56999999999993  46889999999999999998875                                         


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                         +|..++ .+|.+.|.++...  ...+++| .|.+|++|++. ++.++.++       .+|.
T Consensus       282 -------------------~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l~-------~~h~  331 (537)
T KOG0274|consen  282 -------------------ECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNLL-------RGHT  331 (537)
T ss_pred             -------------------cEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEEe-------cccc
Confidence                               566667 7999999998774  5567777 99999999999 77888775       6699


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ++|.++..+  + .++++|+.|++|++||+.+++..    +.+.+             |...|.++.+.+. ..+++|+.
T Consensus       332 ~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~  390 (537)
T KOG0274|consen  332 GPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSL  390 (537)
T ss_pred             ccEEEEEec--C-CEEEEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeee
Confidence            999999988  5 79999999999999999987654    55555             4899999988865 78888865


Q ss_pred             -CeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                       +.|++||+++ . +++..+.+|...+               .++  ...+++|++++.|++|++||..++ ....++.+
T Consensus       391 D~~IkvWdl~~-~~~c~~tl~~h~~~v---------------~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~  451 (537)
T KOG0274|consen  391 DTTIKVWDLRT-KRKCIHTLQGHTSLV---------------SSL--LLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEG  451 (537)
T ss_pred             ccceEeecCCc-hhhhhhhhcCCcccc---------------ccc--ccccceeEeccccccEEEeecccC-ceeeeecc
Confidence             9999999997 6 8999999998764               233  336789999999999999999988 67777877


Q ss_pred             -CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          346 -GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       346 -~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                       |...+..+.+...         .+++++.++. ++|
T Consensus       452 ~~~~~v~~l~~~~~---------~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  452 RHVGGVSALALGKE---------EILCSSDDGSVKLW  479 (537)
T ss_pred             CCcccEEEeecCcc---------eEEEEecCCeeEEE
Confidence             6677777776522         6888899999 999

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.4e-24  Score=172.40  Aligned_cols=281  Identities=14%  Similarity=0.149  Sum_probs=183.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+-|+++.|  +.-|+.+|||+.|++|+|||..+..                                 +.+     
T Consensus        10 s~h~DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s---------------------------------~~W-----   49 (361)
T KOG2445|consen   10 SGHKDLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDS---------------------------------GTW-----   49 (361)
T ss_pred             cCCcceeeeeee--cccCceeeeccCCCcEEEEeccCCC---------------------------------Cce-----
Confidence            468899999999  7889999999999999999975532                                 111     


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCC-----c-eeeeeeecCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS-----D-QCFNIVDMKP  180 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~-----~-~~~~~~~~~~  180 (421)
                                        .+-... +.|.+.|..+.|.+  -|+.+|++ .|+++.||.-...     + +-++.     
T Consensus        50 ------------------~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~-----  105 (361)
T KOG2445|consen   50 ------------------SCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR-----  105 (361)
T ss_pred             ------------------EEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE-----
Confidence                              222334 78999999999954  48999998 9999999975311     1 11111     


Q ss_pred             CCCCccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-
Q 014644          181 SNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-  258 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-  258 (421)
                      .++......|+.++|.|.. .-.+++++.||.||||+....-..    ..|....+-.........+..+..++.|+|. 
T Consensus       106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr  181 (361)
T KOG2445|consen  106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR  181 (361)
T ss_pred             EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeecccc
Confidence            2446667889999999963 167899999999999987764221    2222201111111122344678889999984 


Q ss_pred             --CCEEEEecCC------eEEEEECCCCC---cceeEEeeccCcccccccccCCCcceeeeEEEEcCC----CCEEEEee
Q 014644          259 --GQHLLSRDYM------NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGS  323 (421)
Q Consensus       259 --~~~l~~~~~~------~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~l~~~s  323 (421)
                        ..+||.|++.      .++||.....+   ..+..+..|..++               ++++|.|+    -..||+++
T Consensus       182 ~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  182 MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEee
Confidence              5688888554      89999876433   2234455666655               89999996    34689999


Q ss_pred             CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEcc
Q 014644          324 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHP  403 (421)
Q Consensus       324 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~sp  403 (421)
                      .|| |+||.+......+ .-.+-.        .|+....   +           .    -+.+...-+|...|+.+.|+-
T Consensus       247 kDg-v~I~~v~~~~s~i-~~ee~~--------~~~~~~~---l-----------~----v~~vs~~~~H~~~VWrv~wNm  298 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAI-EEEEVL--------APDLMTD---L-----------P----VEKVSELDDHNGEVWRVRWNM  298 (361)
T ss_pred             cCc-EEEEEEeeccchh-hhhccc--------CCCCccc---c-----------c----eEEeeeccCCCCceEEEEEee
Confidence            999 9999998531110 000000        0000000   0           0    012233446777888888888


Q ss_pred             CCCeEEEec-CCceEEEeC
Q 014644          404 TTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       404 d~~~la~~~-~~~~~i~~~  421 (421)
                      .|.+|++.+ ++.+++|.+
T Consensus       299 tGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  299 TGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eeeEEeecCCCceeeehhh
Confidence            888888777 445777753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.5e-23  Score=188.06  Aligned_cols=349  Identities=12%  Similarity=0.100  Sum_probs=242.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      .||++-|+++.|  +|.+..|+++|.|+++.+|...+..   ..........+         ..+++..+.++++...+.
T Consensus       264 ~GHeDWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg---------~a~GF~g~lw~~n~~~ii  332 (764)
T KOG1063|consen  264 MGHEDWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG---------SAGGFWGGLWSPNSNVII  332 (764)
T ss_pred             cCcccceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccc---------cccceeeEEEcCCCCEEE
Confidence            499999999999  7888899999999999999977653   12222111111         123455555555553333


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      .-+.  .+-.++|.......-...... .||.+.|.+++|.|.|++|++. .|.+-|++-.-..++...-+  .  .-.-
T Consensus       333 ~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi--a--RPQi  405 (764)
T KOG1063|consen  333 AHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI--A--RPQI  405 (764)
T ss_pred             Eecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--c--cccc
Confidence            3222  334678873332222333344 8999999999999999999998 99999998765222223222  1  1244


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccc------cc-----c--------------chh-hhc------cc
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL------CD-----H--------------SAR-ILR------DA  233 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~------~~-----~--------------~~~-~~~------~h  233 (421)
                      |...+.|++|-+.. ..+++|.....+|+|+....-.      +.     .              ..+ .+.      .+
T Consensus       406 HGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  406 HGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             ccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            77889999998864 7899999999999999864210      00     0              000 000      00


Q ss_pred             ----cc------------cCC-----------CcccccccccceeEEEEcCCCCEEEEec-----C-CeEEEEECCCCCc
Q 014644          234 ----AE------------SHG-----------SKSFFTEIIASISDIKFANDGQHLLSRD-----Y-MNLKLWDIRMDST  280 (421)
Q Consensus       234 ----~~------------~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~-~~i~i~d~~~~~~  280 (421)
                          .+            +|.           ..+.+.+|...|.+++.+|+|+++|++.     . ..|++|+..+ -.
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~  563 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WL  563 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hh
Confidence                00            000           0122578899999999999999999862     1 5799999986 66


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce---eEEecCCCCccceeeec
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQA  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~  357 (421)
                      .++.+.+|.-.+               +.++|||||++|++.|.|.++.+|.........   ..+..|+-.|....|+|
T Consensus       564 ~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  564 QVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             hhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence            666888888765               899999999999999999999999987553332   33778999999999999


Q ss_pred             CCcccccccceeeeecccCc-ccCCCCCc----cc--cccccccCeEEEEEccCCC-----eEEEec-CCceEEEe
Q 014644          358 APRARRSSLSNLTRGLYRQA-HENSSSGH----HE--LSYNLSSKLLHLAWHPTTN-----LIACAN-GNSLFFHY  420 (421)
Q Consensus       358 ~~~~~~~~~~~l~~g~~d~~-~iw~~~~~----~~--~~~~~~~~v~~~~~spd~~-----~la~~~-~~~~~i~~  420 (421)
                      +       ..+++++++|.+ ++|...+.    +.  ....+..+|+.++|.|--.     .+|+|- .+.|++|.
T Consensus       629 d-------e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  629 D-------EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             c-------cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            9       447999999999 99933222    11  4557889999999987632     455555 66799986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.5e-25  Score=182.57  Aligned_cols=279  Identities=18%  Similarity=0.158  Sum_probs=218.6

Q ss_pred             cceeeccCCCCceeeeecccccccceeEEeecccce-----eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEE
Q 014644           91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-----ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  164 (421)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lw  164 (421)
                      ..+.|..++|++.++.+|+.  ++.+.+|+..++..     .+....+ .-+...|.|+.|+.|...||+| .||.|++|
T Consensus       214 Sh~EcA~FSPDgqyLvsgSv--DGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSV--DGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             cchhheeeCCCCceEeeccc--cceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            35667888999999999998  77899999887621     1122233 4477899999999999999999 99999999


Q ss_pred             eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccc
Q 014644          165 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  244 (421)
Q Consensus       165 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (421)
                      .+. .+++++.++      ..|+..|+|+.|+.|+ ..+++++.|.++++--+.+|+..    +.+.+|           
T Consensus       291 ri~-tG~ClRrFd------rAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KEfrGH-----------  347 (508)
T KOG0275|consen  291 RIE-TGQCLRRFD------RAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KEFRGH-----------  347 (508)
T ss_pred             EEe-cchHHHHhh------hhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HHhcCc-----------
Confidence            999 778877653      5799999999999999 89999999999999999998765    666664           


Q ss_pred             ccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEe
Q 014644          245 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG  322 (421)
Q Consensus       245 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~  322 (421)
                        .+.|+...|.+||.++++++. |+|++|+.++ .+++.+++......             .|.++-.-| +...++++
T Consensus       348 --sSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  348 --SSYVNEATFTDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             --cccccceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEE
Confidence              899999999999999999865 9999999997 88888887654322             125665555 56788899


Q ss_pred             eCCCeEEEEecCCCCCceeEEecCCCC---ccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCe
Q 014644          323 SYSNLLRIFSHGVGSAGGITVEAGKNE---NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKL  396 (421)
Q Consensus       323 s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v  396 (421)
                      ...++|+|-+++  ++....+....-.   .-..+.+|.       +..+.+.+.|+. .-+  ..+.+.....-|+..|
T Consensus       412 Nrsntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpk-------GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv  482 (508)
T KOG0275|consen  412 NRSNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPK-------GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV  482 (508)
T ss_pred             cCCCeEEEEecc--ceEEeeeccCCccCCceEEEEecCC-------CcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence            999999999987  3455555433222   122233444       348888899998 666  5566666777889999


Q ss_pred             EEEEEccCCCeEEEecCC-ceEEEe
Q 014644          397 LHLAWHPTTNLIACANGN-SLFFHY  420 (421)
Q Consensus       397 ~~~~~spd~~~la~~~~~-~~~i~~  420 (421)
                      ..++-||..+.||+=+.| -+.+|.
T Consensus       483 IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccchhhhhcccchhhhcC
Confidence            999999999999998855 477774

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=171.35  Aligned_cols=283  Identities=16%  Similarity=0.219  Sum_probs=204.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      +.|.. -+|+.|  ++-|.+||+|+.||.|.|||+.+..                                         
T Consensus        21 ld~~~-a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~-----------------------------------------   56 (405)
T KOG1273|consen   21 LDNPL-AECCQF--SRWGDYLAVGCANGRVVIYDFDTFR-----------------------------------------   56 (405)
T ss_pred             ccCCc-cceEEe--ccCcceeeeeccCCcEEEEEccccc-----------------------------------------
Confidence            34444 689999  7899999999999999999998843                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         ..+++ .+|..+|.+++||+||+.|+++ .|..|.+||+.. +.+++.+.        ...
T Consensus        57 -------------------iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir--------f~s  107 (405)
T KOG1273|consen   57 -------------------IARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR--------FDS  107 (405)
T ss_pred             -------------------hhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE--------ccC
Confidence                               12334 7899999999999999999999 999999999984 44555442        458


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      +|+.+.|+|...+.++..-.+..-.+-++..+..     ..+..  ......      +.......|.+.|++|++|+. 
T Consensus       108 pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~--d~d~dl------n~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  108 PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK--DDDGDL------NSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             ccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eeccC--CCcccc------ccccccccccCCCCEEEEecCc
Confidence            8999999998756666655565556666554221     11111  011100      122233468999999999987 


Q ss_pred             CeEEEEECCCCCcceeEEeecc-CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-----e-
Q 014644          268 MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-----G-  340 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-----~-  340 (421)
                      |.+.++|..+ .+++..++... ..               +..+-++..|+.++..+.|..||.|+++.-...     . 
T Consensus       175 Gkllv~~a~t-~e~vas~rits~~~---------------IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e  238 (405)
T KOG1273|consen  175 GKLLVYDAET-LECVASFRITSVQA---------------IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE  238 (405)
T ss_pred             ceEEEEecch-heeeeeeeechhee---------------eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence            9999999987 77777776544 22               267889999999999999999999998732110     0 


Q ss_pred             --eEEe--cCCCCccceeeecCCcccccccceeeeecccCc--ccC--CCCCccccccccc-cCeEEEEEccCCCeEEEe
Q 014644          341 --ITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLS-SKLLHLAWHPTTNLIACA  411 (421)
Q Consensus       341 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~~~~~~~~~~~~~-~~v~~~~~spd~~~la~~  411 (421)
                        ..++  -.+..-+.+.|+.+       +.+++.|+...-  +||  ..|.++..+.|.+ ....++.|+|-...+++-
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~d-------geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGD-------GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCC-------ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence              1111  11233456677766       347877776655  899  5566666666776 567899999999999999


Q ss_pred             cCCceEEEeC
Q 014644          412 NGNSLFFHYA  421 (421)
Q Consensus       412 ~~~~~~i~~~  421 (421)
                      ..|.++||..
T Consensus       312 ~sg~v~iw~~  321 (405)
T KOG1273|consen  312 ASGVVYIWAV  321 (405)
T ss_pred             cCCceEEEEe
Confidence            9999999963

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9e-25  Score=172.45  Aligned_cols=249  Identities=16%  Similarity=0.139  Sum_probs=190.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      -+|++.|..+..  +--|.+|||+++|++|||+.++....         .                              
T Consensus         8 t~H~D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~---------s------------------------------   46 (299)
T KOG1332|consen    8 TQHEDMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ---------S------------------------------   46 (299)
T ss_pred             hhhhhhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC---------c------------------------------
Confidence            367888888776  55689999999999999999877431         0                              


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                        .++.++ .||.++|..++|..  -|.+||++ .||.|.||.-. +++--+.     .....|
T Consensus        47 ------------------~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-~g~w~k~-----~e~~~h  101 (299)
T KOG1332|consen   47 ------------------KLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-NGRWTKA-----YEHAAH  101 (299)
T ss_pred             ------------------eeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-CCchhhh-----hhhhhh
Confidence                              344456 89999999999965  79999999 99999999987 4432211     234679


Q ss_pred             CCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---C---
Q 014644          187 TEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---G---  259 (421)
Q Consensus       187 ~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~---  259 (421)
                      ...|.+++|.|.+ .-.|++++.||.|.+.+.+..... ...++.             ..|.-.|++++|.|.   |   
T Consensus       102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-~t~ki~-------------~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen  102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-TTSKIV-------------FAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-cchhhh-------------hccccccceeeecCcCCCcccc
Confidence            9999999999975 257889999999999998875211 111333             345788999999985   4   


Q ss_pred             --------CEEEEec-CCeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCC----CCEEEEeeCC
Q 014644          260 --------QHLLSRD-YMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYS  325 (421)
Q Consensus       260 --------~~l~~~~-~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~l~~~s~d  325 (421)
                              +.|++|+ |..|+||+..... ...+++.+|...+               +.++|.|.    -.+|+++|+|
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV---------------RDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV---------------RDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh---------------hhhhhccccCCCceeeEEecCC
Confidence                    5688875 5999999997521 3344588899876               89999995    3579999999


Q ss_pred             CeEEEEecCCCC--CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          326 NLLRIFSHGVGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       326 g~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      |++.||-.+...  .....+......+..+.|++.       ++.|+.++.|.. .+|
T Consensus       233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s-------Gn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS-------GNILAVSGGDNKVTLW  283 (299)
T ss_pred             CcEEEEEecCccCcccccccccCCcceEEEEEecc-------ccEEEEecCCcEEEEE
Confidence            999999877432  224455666788999999988       448988888888 999

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.9e-25  Score=198.60  Aligned_cols=231  Identities=16%  Similarity=0.193  Sum_probs=178.7

Q ss_pred             ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          140 NINSISNNS-DCETFVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      .+..+.|+. +.++||++ ..|.|.+||+...  .+++.       .+..|...+.++.|++..+++|++|+.||+|++|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~  161 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCW  161 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------HhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence            455677764 57899999 9999999999842  22222       3478999999999999999999999999999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      |++.....    ..+..             ....|..++|+|. +.+++++.+ |.+++||++...++...+.+|.+++ 
T Consensus       162 DlR~~~S~----~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV-  223 (839)
T KOG0269|consen  162 DLRSKKSK----STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV-  223 (839)
T ss_pred             eeeccccc----ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce-
Confidence            99986533    23322             2578999999994 667788888 9999999998888999999999987 


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                    .++.|+|++.+||+|+.|+.|+|||+.+........-.-..++..+.|.|.++.      .||+.+
T Consensus       224 --------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~------hLAtcs  283 (839)
T KOG0269|consen  224 --------------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY------HLATCS  283 (839)
T ss_pred             --------------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc------hhhhhh
Confidence                          899999999999999999999999998764433333445688999999999653      466654


Q ss_pred             --ccCc-ccCCCCC---ccccccccccCeEEEEEcc-CCCeEEEecCCc
Q 014644          374 --YRQA-HENSSSG---HHELSYNLSSKLLHLAWHP-TTNLIACANGNS  415 (421)
Q Consensus       374 --~d~~-~iw~~~~---~~~~~~~~~~~v~~~~~sp-d~~~la~~~~~~  415 (421)
                        .|.. ++|+...   +......|...++.++|-. |...|.+++.|+
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             ccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence              3334 9994432   2234557888999999965 444566666554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.5e-24  Score=184.35  Aligned_cols=215  Identities=16%  Similarity=0.244  Sum_probs=159.5

Q ss_pred             ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      +-.+|+..-..+.|. ......|++++.|++|.+||+......        ..+.                         
T Consensus       172 ~L~gH~~eg~glsWn-~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~-------------------------  217 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWN-RQQEGTLLSGSDDHTICLWDINAESKE--------DKVV-------------------------  217 (422)
T ss_pred             EEEeecccccccccc-cccceeEeeccCCCcEEEEeccccccC--------Cccc-------------------------
Confidence            445777777889994 233668999999999999999874411        0000                         


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD  184 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~  184 (421)
                                          .+...+ .+|...|..++|++-.. ++++. +|+.+.|||++.. .+..       ....
T Consensus       218 --------------------~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~-------~~~~  269 (422)
T KOG0264|consen  218 --------------------DPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS-------HSVK  269 (422)
T ss_pred             --------------------cceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc-------cccc
Confidence                                334455 89999999999999544 55555 9999999999952 1222       2347


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-E
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-L  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~  263 (421)
                      +|.+.|.|++|+|-+..+||+||.|++|++||+|+...   ....+..             |...|..+.|+|+...+ |
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~-------------H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEG-------------HEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccC-------------CCcceEEEEeCCCCCceeE
Confidence            89999999999998778999999999999999998543   2344444             58999999999986654 4


Q ss_pred             Ee-cCCeEEEEECCCCCcc-------------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeE
Q 014644          264 SR-DYMNLKLWDIRMDSTP-------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLL  328 (421)
Q Consensus       264 ~~-~~~~i~i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i  328 (421)
                      ++ .|+.+.+||+..-++.             +..-.||...+               ..+.|+|+.. .|++.++|+.+
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~L  398 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNIL  398 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceE
Confidence            44 4599999999653332             23334455443               7899999755 47788999999


Q ss_pred             EEEecCC
Q 014644          329 RIFSHGV  335 (421)
Q Consensus       329 ~iwd~~~  335 (421)
                      .||++..
T Consensus       399 qIW~~s~  405 (422)
T KOG0264|consen  399 QIWQMAE  405 (422)
T ss_pred             EEeeccc
Confidence            9999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=4.5e-24  Score=188.49  Aligned_cols=308  Identities=13%  Similarity=0.149  Sum_probs=219.2

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccc-cceeeccCCCCceeeee
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE-KNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~  107 (421)
                      -.+|++.|.+|..  ++.|.+|++|+.||+||||.+.++.  ++......+.|.|++|++.. ..+++++..        
T Consensus       396 yrGHtg~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~d~~I~~vaw~P~~~~~vLAvA~~--------  463 (733)
T KOG0650|consen  396 YRGHTGLVRSISV--DPSGEWLASGSDDGTVRIWEIATGR--CVRTVQFDSEIRSVAWNPLSDLCVLAVAVG--------  463 (733)
T ss_pred             EeccCCeEEEEEe--cCCcceeeecCCCCcEEEEEeecce--EEEEEeecceeEEEEecCCCCceeEEEEec--------
Confidence            3589999999999  7899999999999999999999986  33333455566666666532 233333331        


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----cCCcEEEEeCCCCcee---eeeeecC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQC---FNIVDMK  179 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~d~~i~lwd~~~~~~~---~~~~~~~  179 (421)
                                          .++-.+...-..   .+.--+....|+++     .++.+..|.-....+.   +++.   
T Consensus       464 --------------------~~~~ivnp~~G~---~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~---  517 (733)
T KOG0650|consen  464 --------------------ECVLIVNPIFGD---RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV---  517 (733)
T ss_pred             --------------------CceEEeCccccc---hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE---
Confidence                                111111000000   01111122333332     3667778865421111   1221   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcC---CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                          -.|...|..+.|+..| .+|++...+   ..|.|.++......    .-|             ....+.+.++.|+
T Consensus       518 ----I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF-------------~kskG~vq~v~FH  575 (733)
T KOG0650|consen  518 ----IKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPF-------------RKSKGLVQRVKFH  575 (733)
T ss_pred             ----EecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cch-------------hhcCCceeEEEec
Confidence                3477899999999999 999887654   57888888765432    112             2225689999999


Q ss_pred             CCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          257 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       257 ~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |...+|+.++...|+|||+.. +..++.+.....++               .+++.+|.|.-|+.|+.|+.+..+|+.-.
T Consensus       576 Ps~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi---------------S~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  576 PSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI---------------SSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             CCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee---------------eeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            999999999989999999975 77776665544443               68999999999999999999999999988


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--------CC---ccccccccccC----eEEEE
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--------SG---HHELSYNLSSK----LLHLA  400 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--------~~---~~~~~~~~~~~----v~~~~  400 (421)
                      ....+++..|...+++++|++.       +.+|++|+.||. .++..        +.   .+..+.+|...    |.++.
T Consensus       640 skPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~  712 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI  712 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence            8889999999999999999988       669999999999 77611        11   22345577655    99999


Q ss_pred             EccCCCeEEEecC-CceEEE
Q 014644          401 WHPTTNLIACANG-NSLFFH  419 (421)
Q Consensus       401 ~spd~~~la~~~~-~~~~i~  419 (421)
                      |||...+|.+++. +.|++|
T Consensus       713 wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  713 WHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccCCCceEEecCCCceEEee
Confidence            9999999998885 479888

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-22  Score=185.36  Aligned_cols=333  Identities=13%  Similarity=0.141  Sum_probs=244.7

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      |+++.- |+.--+.++.|+.+|.++||++.+++. ..+..  +.            ..|.++...|..-.++-|..  ++
T Consensus       162 Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~--~~------------s~IT~ieqsPaLDVVaiG~~--~G  224 (910)
T KOG1539|consen  162 ITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE--FF------------SRITAIEQSPALDVVAIGLE--NG  224 (910)
T ss_pred             eeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecc--cc------------cceeEeccCCcceEEEEecc--Cc
Confidence            777754 222356799999999999999999883 33322  11            35666666677666777665  67


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      .+.+.++...   +.+..+ +...+.|++++|..||+.+++ | ..|.+-+||++ ..++..++      ...|.+.|..
T Consensus       225 ~ViifNlK~d---kil~sF-k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe-~kkl~~v~------~nah~~sv~~  293 (910)
T KOG1539|consen  225 TVIIFNLKFD---KILMSF-KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE-KKKLINVT------RNAHYGSVTG  293 (910)
T ss_pred             eEEEEEcccC---cEEEEE-EccccceeEEEeccCCCeeEEeccCCceEEEEEcC-CCeeeeee------eccccCCccc
Confidence            8889998887   888888 444699999999999986665 5 67999999999 55554443      2578889999


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC---------------------------------
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS---------------------------------  239 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~---------------------------------  239 (421)
                      ..|.|.. ..+++++.|..+++|=..++......++.-.+|..+|..                                 
T Consensus       294 ~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~  372 (910)
T KOG1539|consen  294 ATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE  372 (910)
T ss_pred             ceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence            9999998 899999999999988554221100000000000000000                                 


Q ss_pred             ---------------c-----------------------------------------------------cccccccccee
Q 014644          240 ---------------K-----------------------------------------------------SFFTEIIASIS  251 (421)
Q Consensus       240 ---------------~-----------------------------------------------------~~~~~~~~~v~  251 (421)
                                     .                                                     ..++.-...+.
T Consensus       373 l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~  452 (910)
T KOG1539|consen  373 LGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINAT  452 (910)
T ss_pred             hcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceE
Confidence                           0                                                     00111235688


Q ss_pred             EEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE---eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644          252 DIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  327 (421)
Q Consensus       252 ~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~  327 (421)
                      +++.++.|++.+.|.. |.|.+|++.+ +-....+   ..|...+               ++++...-++.+++++.+|.
T Consensus       453 av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V---------------~gla~D~~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  453 AVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEV---------------TGLAVDGTNRLLVSAGADGI  516 (910)
T ss_pred             EEEEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCce---------------eEEEecCCCceEEEccCcce
Confidence            9999999999999976 9999999986 7777777   3566654               78898888899999999999


Q ss_pred             EEEEecCCCC----------------------------------------CceeEEecCCCCccceeeecCCcccccccc
Q 014644          328 LRIFSHGVGS----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       328 i~iwd~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                      +.+||.....                                        ...+.+.+|.+.++.+.|+|+  |+     
T Consensus       517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D--gr-----  589 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD--GR-----  589 (910)
T ss_pred             EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC--Cc-----
Confidence            9999987641                                        234455689999999999999  55     


Q ss_pred             eeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          368 NLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       368 ~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      .|++++.|+. ++|+ ....+........+.+++.|+|+|.+||++.  .++||+|.
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999999999 9994 3345556666788899999999999999998  36899995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=9.9e-25  Score=181.50  Aligned_cols=253  Identities=13%  Similarity=0.174  Sum_probs=194.2

Q ss_pred             eeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          131 KVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       131 ~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      ..+ .||.+.|.+++=+|.. ..+++| .||.|+|||+. ...+...+       ..|.+.|..+++..   ..+++++.
T Consensus        60 ~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f-------~AH~G~V~Gi~v~~---~~~~tvgd  127 (433)
T KOG0268|consen   60 GSL-DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTF-------KAHEGLVRGICVTQ---TSFFTVGD  127 (433)
T ss_pred             hhc-cccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhhee-------ecccCceeeEEecc---cceEEecC
Confidence            344 8999999999999976 788898 99999999998 55666544       88999999999987   45889999


Q ss_pred             CCeEEEEECCcccc-----------------------cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-E
Q 014644          209 RGFVRLVDMRQSAL-----------------------CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S  264 (421)
Q Consensus       209 d~~v~iwd~~~~~~-----------------------~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~  264 (421)
                      |.+|+.|-+...-.                       +.+.+.+|+.  ....+.+.+.-....+.++.|+|....|+ +
T Consensus       128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~--~R~~Pv~smswG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  128 DKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDE--QRDNPVSSMSWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             CcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccc--ccCCccceeecCCCceeEEecCCCcchheee
Confidence            99999998543210                       1111223322  11112223444456788999999776554 4


Q ss_pred             e-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          265 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       265 ~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      + +|+.|.|||++. ..+++.....-..                ..++|+|.+--+++|++|..++.+|++.......+.
T Consensus       206 ~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             eccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccceehhhhhhcccchhh
Confidence            4 569999999997 7777766544332                589999988778999999999999999988889999


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccc---cCeEEEEEccCCCeEEEec-CCceEE
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~---~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      .+|.+.|..+.|+|.  |.     -+++|+.|.. +|+...+.-..-+-|+   ..|.++.||-|.+++++|| ++++++
T Consensus       269 ~dhvsAV~dVdfspt--G~-----EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPT--GQ-----EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             cccceeEEEeccCCC--cc-----hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            999999999999999  44     8999999999 9995544333333333   4689999999999999999 567999


Q ss_pred             EeC
Q 014644          419 HYA  421 (421)
Q Consensus       419 ~~~  421 (421)
                      |.+
T Consensus       342 Wka  344 (433)
T KOG0268|consen  342 WKA  344 (433)
T ss_pred             eec
Confidence            964

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=176.84  Aligned_cols=242  Identities=17%  Similarity=0.204  Sum_probs=189.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||.-+|+.+.|  +++...+++++.|..|+||......                                         
T Consensus       258 ~Gh~kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s-----------------------------------------  294 (506)
T KOG0289|consen  258 KGHTKKITSVKF--HKDLDTVITASADEIIRVWSVPLSS-----------------------------------------  294 (506)
T ss_pred             cCcceEEEEEEe--ccchhheeecCCcceEEeecccccc-----------------------------------------
Confidence            389999999999  7889999999999999999976533                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +.... ..|.++|+.+..+|.|+||+++ .|++....|++.+.......+      +...-
T Consensus       295 -------------------~~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------~~s~v  348 (506)
T KOG0289|consen  295 -------------------EPTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------ETSDV  348 (506)
T ss_pred             -------------------Ccccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------ccccc
Confidence                               11112 6899999999999999999999 999999999994444333221      11224


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .+++.+|+||| .+|.+|..|+.|+|||+.++...    ..|             ++|.++|..++|+.+|-+|+++.+ 
T Consensus       349 ~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~F-------------pght~~vk~i~FsENGY~Lat~add  410 (506)
T KOG0289|consen  349 EYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AKF-------------PGHTGPVKAISFSENGYWLATAADD  410 (506)
T ss_pred             eeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----ccC-------------CCCCCceeEEEeccCceEEEEEecC
Confidence            58899999999 99999999999999999986532    334             446999999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-CceeEEecC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAG  346 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~  346 (421)
                      +.|++||+|. -+.++++...+..              ++.+++|.+.|++|+.++.|=.|++++-.+.+ .+...+.-|
T Consensus       411 ~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~  475 (506)
T KOG0289|consen  411 GSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH  475 (506)
T ss_pred             CeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence            8899999996 6667777655532              23689999999999999888788887744432 345667778


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .+....+.|...  .     .++++++.|.. +++
T Consensus       476 sg~st~v~Fg~~--a-----q~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  476 SGLSTGVRFGEH--A-----QYLASTSMDAILRLY  503 (506)
T ss_pred             ccccceeeeccc--c-----eEEeeccchhheEEe
Confidence            888888888766  2     37888888876 543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.9e-24  Score=175.12  Aligned_cols=260  Identities=16%  Similarity=0.169  Sum_probs=208.3

Q ss_pred             eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          127 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                      .+.++.+ .||.+.|..++.......+.++ .|.+.+||.++ .+.++..+       .+|.+.|.++.|++.+ .++++
T Consensus       138 ~~lvre~-~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-sg~CL~~Y-------~GH~GSVNsikfh~s~-~L~lT  207 (481)
T KOG0300|consen  138 FRLVREL-EGHKDGIWHVAADSTQPICGTASADHTARIWSLE-SGACLATY-------TGHTGSVNSIKFHNSG-LLLLT  207 (481)
T ss_pred             Eeehhhh-cccccceeeehhhcCCcceeecccccceeEEeec-cccceeee-------cccccceeeEEecccc-ceEEE
Confidence            3667778 8999999999988777788888 99999999999 66666544       8999999999999999 99999


Q ss_pred             EEcCCeEEEEEC------Cccccc-cc----chhhhcccccc------------CCCcccccccccceeEEEEcCCCCEE
Q 014644          206 SSSRGFVRLVDM------RQSALC-DH----SARILRDAAES------------HGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       206 ~~~d~~v~iwd~------~~~~~~-~~----~~~~~~~h~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      ++.|++-.||..      ...... +.    ...--+.|...            ..+...+++|...|.+..|-..|+.+
T Consensus       208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~  287 (481)
T KOG0300|consen  208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM  287 (481)
T ss_pred             ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence            999999999972      221000 00    00000010000            00112368899999999999999999


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      ++++. .+..+||+++ ++++..+.+|....               +.++-+|..+++++.+.|.+.++||++..-....
T Consensus       288 vTaSWDRTAnlwDVEt-ge~v~~LtGHd~EL---------------tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~  351 (481)
T KOG0300|consen  288 VTASWDRTANLWDVET-GEVVNILTGHDSEL---------------THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA  351 (481)
T ss_pred             eeeeccccceeeeecc-CceeccccCcchhc---------------cccccCCcceEEEEeccCceeEeccchhhcceee
Confidence            99986 9999999998 99999999998864               7889999999999999999999999997656688


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEecCCc-eE
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LF  417 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~-~~  417 (421)
                      +++||.+.|.+..|..+.        .+++|++|.+ ++|+.  .......+....+++.++.+..+++||.--+++ ++
T Consensus       352 VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR  423 (481)
T KOG0300|consen  352 VFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR  423 (481)
T ss_pred             eecccccceeEEEEecCC--------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence            999999999999998772        5899999999 99933  333334455678899999999999999998776 88


Q ss_pred             EEe
Q 014644          418 FHY  420 (421)
Q Consensus       418 i~~  420 (421)
                      +|+
T Consensus       424 lfD  426 (481)
T KOG0300|consen  424 LFD  426 (481)
T ss_pred             EEe
Confidence            886

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1e-23  Score=173.02  Aligned_cols=294  Identities=14%  Similarity=0.160  Sum_probs=203.2

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee------------EEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV------------KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      ...++|  +|||..|++-+.|..+++|++...-.            .........+.|.+-+|-+.-     -+..|+..
T Consensus        52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M-----~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM-----KSDQPSTN  124 (406)
T ss_pred             hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecc-----ccCCCccc
Confidence            457899  79999999999999999999754221            011111112222222211100     00111222


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeec-CCCCcc---eEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFN---INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~---v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                      +.+..+-  ..-|.+||.-++   +....+. -.|.++   ..+|+|+|||.+|++|..++|+++|+...+.........
T Consensus       125 l~a~ssr--~~PIh~wdaftG---~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  125 LFAVSSR--DQPIHLWDAFTG---KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             eeeeccc--cCceeeeecccc---ccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence            2222111  337899999887   4444440 134444   468999999999999999999999995455433322111


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      ...-.+..+.|.+++|+|..+..++.++....+-||.-..++.+    .++.+             |.+.|+-+.|.++|
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llgg-------------h~gGvThL~~~edG  262 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLGG-------------HGGGVTHLQWCEDG  262 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeecc-------------cCCCeeeEEeccCc
Confidence            11113346788999999988679999999999888877665543    44444             48999999999999


Q ss_pred             CEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          260 QHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       260 ~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      +.|.+|..  ..|..||++..+.++..+..|....        |..|    -+...|++++|++|+.||.|++||++...
T Consensus       263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             CeecccccCCCeEEEEeehhccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCC
Confidence            99999854  8899999998788888887776522        1122    35667899999999999999999999866


Q ss_pred             CceeEEecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644          338 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~  377 (421)
                      .....+..+...++.+.+.|.       ...+|+.+....
T Consensus       331 n~~sv~~~~sd~vNgvslnP~-------mpilatssGqr~  363 (406)
T KOG2919|consen  331 NEVSVTGNYSDTVNGVSLNPI-------MPILATSSGQRI  363 (406)
T ss_pred             CcccccccccccccceecCcc-------cceeeeccCcee
Confidence            788999999999999999998       346777765544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.4e-22  Score=156.22  Aligned_cols=262  Identities=19%  Similarity=0.257  Sum_probs=186.2

Q ss_pred             CccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE----EeeecCCCCCcccccccccccceeeccC
Q 014644           23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK----KIKEMDHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      ...+-+...|.+.|.|.+|  +|.|+++++|+.|++|++..++.....    .+.-.-|.+.|.+++|....        
T Consensus        79 ~v~~kr~khhkgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~--------  148 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP--------  148 (350)
T ss_pred             eEEeeeccccCccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC--------
Confidence            4556677789999999999  799999999999999999876653311    11111123333333332211        


Q ss_pred             CCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644           99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus        99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~  177 (421)
                      ...++.++++.. .+..+.+-|...+   +..+.+ .+|++.|.++- +-++-.+++| .|.+|+.||++ -..++++++
T Consensus       149 ~s~~~il~s~ga-gdc~iy~tdc~~g---~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlr-v~~~v~~l~  221 (350)
T KOG0641|consen  149 ESGGAILASAGA-GDCKIYITDCGRG---QGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLR-VNSCVNTLD  221 (350)
T ss_pred             CcCceEEEecCC-CcceEEEeecCCC---Ccceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeee-ccceeeecc
Confidence            112333443332 1235566676666   778888 89999998873 3358899999 99999999998 556776653


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                      ..-..-.-....|.+++..|.| ++|++|-.|....+||++.++.+    +.+..|             ...|.++.|+|
T Consensus       222 ~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~f~ph-------------sadir~vrfsp  283 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QRFHPH-------------SADIRCVRFSP  283 (350)
T ss_pred             CcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----eeeCCC-------------ccceeEEEeCC
Confidence            2110001123679999999999 99999999999999999998765    555554             78999999999


Q ss_pred             CCCEEEEecC-CeEEEEECCCC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          258 DGQHLLSRDY-MNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       258 ~~~~l~~~~~-~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      ...|+++++. ..|++-|+.-+   ..++.....|....               ..+.|+|..--+++.+.|.++.+|-+
T Consensus       284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CceEEEEecccceEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEecc
Confidence            9999999987 99999999631   11223333444432               57899999888899999999999976


Q ss_pred             C
Q 014644          334 G  334 (421)
Q Consensus       334 ~  334 (421)
                      .
T Consensus       349 ~  349 (350)
T KOG0641|consen  349 N  349 (350)
T ss_pred             C
Confidence            4

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=193.09  Aligned_cols=239  Identities=16%  Similarity=0.227  Sum_probs=185.5

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .+..|+|. ..+.++|||++..|.|.+||+....    .                                         
T Consensus        89 S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~----r-----------------------------------------  122 (839)
T KOG0269|consen   89 SAADVKWG-QLYSNLIATCSTNGVISVWDLNKSI----R-----------------------------------------  122 (839)
T ss_pred             ehhhcccc-cchhhhheeecCCCcEEEEecCccc----c-----------------------------------------
Confidence            46788895 5668899999999999999987621    0                                         


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                                  .+.+..| ..|+..++++.|++. ..+|++| .||+|++||++. .....+       +.+....|+.
T Consensus       123 ------------nk~l~~f-~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t-------~~~nSESiRD  181 (839)
T KOG0269|consen  123 ------------NKLLTVF-NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKST-------FRSNSESIRD  181 (839)
T ss_pred             ------------chhhhHh-hhhccceeeeeeccCCccEEEecCCCceEEEEeeec-cccccc-------ccccchhhhc
Confidence                        0333445 899999999999985 5577788 999999999993 443433       3567788999


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      +.|+|..+..++++...|.+++||+|....+   ...+..             |.++|.++.|+|++.+||+|+. +.|+
T Consensus       182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k~~A-------------H~GpV~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKKLTA-------------HNGPVLCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             eeeccCCCceEEEecCCceEEEeeccCchhH---HHHhhc-------------ccCceEEEeecCCCceeeecCCCccEE
Confidence            9999987789999999999999999987544   344444             5999999999999999999975 9999


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE-EEEee--CCCeEEEEecCCCCCceeEEecCCC
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGS--YSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      |||+.. .+.......+...              .+.++.|-|..++ |++++  .|-.|+|||++.......++..|++
T Consensus       246 iWd~t~-~~~~~~~tInTia--------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  246 IWDMTD-SRAKPKHTINTIA--------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             EEeccC-CCccceeEEeecc--------------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence            999974 4333333222221              2378999997655 66665  4789999999987777899999999


Q ss_pred             CccceeeecCCcccccccceeeeecccCc
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~  377 (421)
                      .+..++|....      ...|.++++|+.
T Consensus       311 ~vt~i~W~~~d------~~~l~s~sKD~t  333 (839)
T KOG0269|consen  311 SVTGIAWDSGD------RINLWSCSKDGT  333 (839)
T ss_pred             cccceeccCCC------ceeeEeecCccH
Confidence            99999997631      237888999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=7.7e-23  Score=175.43  Aligned_cols=280  Identities=16%  Similarity=0.241  Sum_probs=206.6

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .+.|++|.|  +|...+|++++.|++++||.++...-..++.                                      
T Consensus       213 ~~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N~~lqS--------------------------------------  252 (514)
T KOG2055|consen  213 HGGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS--------------------------------------  252 (514)
T ss_pred             cCCceEEEe--cCCCceEEEecCCCcEEEEEecCccChhhee--------------------------------------
Confidence            468999999  8999999999999999999998643111111                                      


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC-CC
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV  189 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~  189 (421)
                                          + .-...+|.++.|.|+|+ .++++ ....++.||+. ..+..++-     .+.++. ..
T Consensus       253 --------------------~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~~-----~~~g~e~~~  305 (514)
T KOG2055|consen  253 --------------------I-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKLK-----PPYGVEEKS  305 (514)
T ss_pred             --------------------e-eeccCccceeeecCCCceEEEecccceEEEEeecc-cccccccc-----CCCCcccch
Confidence                                1 12345789999999999 77777 88899999998 34333221     223333 35


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CC
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~  268 (421)
                      +.....+|++ ++|+..+..|.|.+.-..++..+    ..+..              .+.|..++|+.|++.|++.+ +|
T Consensus       306 ~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~G  366 (514)
T KOG2055|consen  306 MERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTG  366 (514)
T ss_pred             hheeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCc
Confidence            6778889999 99999999999999998887654    45554              67899999999999887664 49


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-----CCceeEE
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITV  343 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-----~~~~~~~  343 (421)
                      .|.+||++. ..++.++......-.              +++|.++++.|+|+||..|.|-|||.++.     .+.+..+
T Consensus       367 eV~v~nl~~-~~~~~rf~D~G~v~g--------------ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~  431 (514)
T KOG2055|consen  367 EVYVWNLRQ-NSCLHRFVDDGSVHG--------------TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV  431 (514)
T ss_pred             eEEEEecCC-cceEEEEeecCccce--------------eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence            999999997 788888765443311              57899999999999999999999996642     2445666


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc---ccCCCCC-----ccccccccccCeEEEEEccCCCeEEEec-CC
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENSSSG-----HHELSYNLSSKLLHLAWHPTTNLIACAN-GN  414 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~---~iw~~~~-----~~~~~~~~~~~v~~~~~spd~~~la~~~-~~  414 (421)
                      ..-...|..+.|+++  .     ..||.++.-..   ++-....     .....-.--..|++++|||.+-+||+|. .+
T Consensus       432 dNLtt~Itsl~Fn~d--~-----qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHD--A-----QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             hhhheeeeeeeeCcc--h-----hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence            666778899999998  3     36666655443   3331110     0011112235789999999999999999 56


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .+.+|.
T Consensus       505 rv~l~k  510 (514)
T KOG2055|consen  505 RVHLFK  510 (514)
T ss_pred             ceeeEe
Confidence            788885

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4e-23  Score=167.54  Aligned_cols=308  Identities=14%  Similarity=0.189  Sum_probs=203.4

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      -|.+.|+++..- ...|+++++|+.||.|.+||++...-.....                  +.+-              
T Consensus        41 ~HgGsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~------------------li~k--------------   87 (397)
T KOG4283|consen   41 PHGGSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASG------------------LIAK--------------   87 (397)
T ss_pred             cCCCccceeeec-cccceEEeecCCCccEEEEEeccccchhhcc------------------ceeh--------------
Confidence            588999999993 2459999999999999999998643111100                  0000              


Q ss_pred             ccccceeEEeecccceeee--eeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          111 TENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                      ..|  .+.-..+|...|.++.|-| |.-.+.++ .|.++++||.+ .-+..-.+     +   .
T Consensus        88 ----------------~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-TlQ~a~~F-----~---m  142 (397)
T KOG4283|consen   88 ----------------HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-TLQEAVDF-----K---M  142 (397)
T ss_pred             ----------------eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecc-cceeeEEe-----e---c
Confidence                            011  1111268999999999999 44455566 99999999999 44444443     1   3


Q ss_pred             CCCeeEEEEecCCC--CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-
Q 014644          187 TEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-  263 (421)
Q Consensus       187 ~~~v~~~~~~p~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  263 (421)
                      .+.|++-+++|-..  .++++|..|-.|++.|+.+|...    +.+.+             |.+.|.++.|+|..++++ 
T Consensus       143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~LsG-------------Hr~~vlaV~Wsp~~e~vLa  205 (397)
T KOG4283|consen  143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTLSG-------------HRDGVLAVEWSPSSEWVLA  205 (397)
T ss_pred             CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eeecc-------------ccCceEEEEeccCceeEEE
Confidence            36688888888531  47788889999999999998754    56555             489999999999988876 


Q ss_pred             EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcce-eeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF-DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      +|+. |.|++||++....++..+..|....+.+  +..+.+.+ .+.+++|+.++.++++.+.|..+++|+...+.....
T Consensus       206 tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~--~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~  283 (397)
T KOG4283|consen  206 TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI--LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR  283 (397)
T ss_pred             ecCCCceEEEEEeecccceeEEeecccCccCcc--ccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence            4554 9999999997667777787776422211  11122222 247999999999999999999999999998854333


Q ss_pred             EEe--cCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          342 TVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       342 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      .+-  .|... ...++... .+.   ...+.---.++. .+.  -.++.+.....|-..|.+.++-|+-+.+.+|. +++
T Consensus       284 ~~g~~~~n~~-~~~~~~~~-~~~---s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n  358 (397)
T KOG4283|consen  284 EFGPIIHNQT-TSFAVHIQ-SMD---SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGN  358 (397)
T ss_pred             cccccccccc-ccceEEEe-ecc---cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCc
Confidence            221  11110 11111100 000   001111111122 333  23445555567778899999999988888888 677


Q ss_pred             eEEEe
Q 014644          416 LFFHY  420 (421)
Q Consensus       416 ~~i~~  420 (421)
                      ++.|.
T Consensus       359 i~~w~  363 (397)
T KOG4283|consen  359 IYMWS  363 (397)
T ss_pred             ccccc
Confidence            88884

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=180.51  Aligned_cols=233  Identities=15%  Similarity=0.176  Sum_probs=184.8

Q ss_pred             CcceEEEeecCCCCE-EEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCET-FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~-l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .+.|.+++|+|...+ +|+...-.+.||+.. .....+.+       ......+++++|..|| .++++|...|.|++||
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~-------srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD   96 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTF-------SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFD   96 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhH-------HhhccceeEEEeecCC-eEEEccCCcCcEEEec
Confidence            467999999996543 444566789999987 44444322       4566889999999999 9999999999999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      +.+...    ++.+..             |..++..+.|+|++. .+++|+| +.+++||+.+ ......+.+|+..+  
T Consensus        97 ~k~r~i----LR~~~a-------------h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYV--  156 (487)
T KOG0310|consen   97 MKSRVI----LRQLYA-------------HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYV--  156 (487)
T ss_pred             cccHHH----HHHHhh-------------ccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEEEEecCCccee--
Confidence            665322    255555             489999999999655 5566777 9999999986 55555788888866  


Q ss_pred             cccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          295 LCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                   .+.+|+|. +.++++|++||.|++||++... ....--.|..+|..+.+-|+       +..+++++
T Consensus       157 -------------R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lps-------gs~iasAg  215 (487)
T KOG0310|consen  157 -------------RCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPS-------GSLIASAG  215 (487)
T ss_pred             -------------EeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCC-------CCEEEEcC
Confidence                         78999995 5688999999999999999874 44444568899999999988       44899999


Q ss_pred             ccCcccC--CCCC-ccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          374 YRQAHEN--SSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       374 ~d~~~iw--~~~~-~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ....++|  ..++ .+.....|...|+|+++..++..|.+|+ ++.+.+|+
T Consensus       216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd  266 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD  266 (487)
T ss_pred             CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence            8888999  3344 4444455999999999999999999999 77799987

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-22  Score=185.07  Aligned_cols=250  Identities=13%  Similarity=0.122  Sum_probs=176.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ..|+..-+.|+|  .++|+.+.+++.||.|++|+....+  ...+..  +.+            .+.+++..  ...+..
T Consensus        10 yaht~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~------------~v~~ia~~--s~~f~~   71 (933)
T KOG1274|consen   10 YAHTGGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGE------------LVSSIACY--SNHFLT   71 (933)
T ss_pred             hhccCceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCc------------eeEEEeec--ccceEE
Confidence            467777899999  8999999999999999999976542  111110  222            22222222  224444


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      ++.  ..++..+....+.....+    ..-+-++++++|+.+|+++|.| +|-.|++-++....+..        .+.+|
T Consensus        72 ~s~--~~tv~~y~fps~~~~~iL----~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------~lrgh  137 (933)
T KOG1274|consen   72 GSE--QNTVLRYKFPSGEEDTIL----ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------VLRGH  137 (933)
T ss_pred             eec--cceEEEeeCCCCCcccee----eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--------eeccc
Confidence            444  335566655554222222    2335689999999999999999 99999999998444333        23899


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEe
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR  265 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~  265 (421)
                      .++|.++.|+|++ ++||+.+.||.|++||+.++.+.    +.+.. ......    ......+..++|+|+ |++++.+
T Consensus       138 ~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~-v~k~n~----~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  138 DAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTG-VDKDNE----FILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             CCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhccc-CCcccc----ccccceeeeeeecCCCCeEEeec
Confidence            9999999999999 99999999999999999987654    33322 000000    001456788999999 5555566


Q ss_pred             cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      .++.|++|+... .+....+.......             .+..+.|+|+|+|||+++.||.|.|||+++
T Consensus       208 ~d~~Vkvy~r~~-we~~f~Lr~~~~ss-------------~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  208 VDNTVKVYSRKG-WELQFKLRDKLSSS-------------KFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCeEEEEccCC-ceeheeeccccccc-------------ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            779999999975 66666665433221             016899999999999999999999999986

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=7.3e-24  Score=179.18  Aligned_cols=252  Identities=17%  Similarity=0.220  Sum_probs=194.6

Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      +..+.+|++.... .....++ .|-.+.|+++.|.++++.++++ .|+.+++|++. ..+...       ++.+|++.|+
T Consensus       196 Dr~Ik~W~v~~~k-~~~~~tL-aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~r~~~-------TLsGHtdkVt  265 (459)
T KOG0288|consen  196 DRIIKLWNVLGEK-SELISTL-AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SLRLRH-------TLSGHTDKVT  265 (459)
T ss_pred             hhhhhhhhcccch-hhhhhhh-hccCCCcceeeecCCCceEEeecCCCceeeeecc-chhhhh-------hhccccccee
Confidence            4589999886652 3456666 7888899999999999988887 99999999998 566665       4589999999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i  270 (421)
                      ++.|.... ..+++|+.|.+|++||+......    +.+-.              .+.+..|..+  +..+++|. +++|
T Consensus       266 ~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~----kt~l~--------------~S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  266 AAKFKLSH-SRVVSGSADRTIKLWDLQKAYCS----KTVLP--------------GSQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             eehhhccc-cceeeccccchhhhhhhhhhhee----ccccc--------------cccccceEec--ceeeeecccccce
Confidence            99999887 66999999999999999986543    22222              2455666665  45666774 4899


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC---
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---  347 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---  347 (421)
                      ++||.+. ..+......+...                +++..+++|..|.+.+.|.++.+.|+++. ....++.+..   
T Consensus       325 RfwD~Rs-~~~~~sv~~gg~v----------------tSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  325 RFWDIRS-ADKTRSVPLGGRV----------------TSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKC  386 (459)
T ss_pred             EEEeccC-CceeeEeecCcce----------------eeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccc
Confidence            9999986 7777777766632                79999999999999999999999999987 5555554332   


Q ss_pred             -CCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccc--cCeEEEEEccCCCeEEEecC-CceEEEe
Q 014644          348 -NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLS--SKLLHLAWHPTTNLIACANG-NSLFFHY  420 (421)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~--~~v~~~~~spd~~~la~~~~-~~~~i~~  420 (421)
                       ...+.+.|+|+       ..++++|+.||. +||  ..+..........  ..|++++|+|.|..|++++. ..+.+|.
T Consensus       387 asDwtrvvfSpd-------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  387 ASDWTRVVFSPD-------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccceeEECCC-------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence             33788999999       449999999999 999  3333333333222  26999999999999999984 4577773

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=2e-22  Score=179.44  Aligned_cols=312  Identities=16%  Similarity=0.148  Sum_probs=206.2

Q ss_pred             EEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           37 NRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        37 ~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      .+..|++.++ ...|+.+-.||.|.++|......+      ..+                                    
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr------~ee------------------------------------   90 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR------LEE------------------------------------   90 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcc------hhh------------------------------------
Confidence            3478876666 457888999999999998764421      000                                    


Q ss_pred             eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                                  ..++.. ..|.+.|..+.|-|....|+++ .|.++++||++ ...+...-     .+.+|...|.+++
T Consensus        91 ------------~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~~-----~~~GH~~SvkS~c  151 (720)
T KOG0321|consen   91 ------------RQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGGR-----LNLGHTGSVKSEC  151 (720)
T ss_pred             ------------hhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecce-----eecccccccchhh
Confidence                        223334 6899999999999966678887 99999999999 44444321     2378999999999


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCccccc--cc-chhhhccccccCCCcc-------cccccccceeE---EEEcCCCCE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALC--DH-SARILRDAAESHGSKS-------FFTEIIASISD---IKFANDGQH  261 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~-~~~~~~~h~~~~~~~~-------~~~~~~~~v~~---~~~s~~~~~  261 (421)
                      |.|..+..|++|+.||.|.|||++-....  .. .......|...+.+.+       .-..+...|.+   +.+..|...
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence            99999889999999999999999865410  00 0122333333221111       12333444444   555568888


Q ss_pred             EEEec--CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          262 LLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       262 l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      ||+++  |+.|++||+++ .......    .........+.+..-.++.++.....|.+|++.+.|+.|+.|++......
T Consensus       232 laSaga~D~~iKVWDLRk-~~~~~r~----ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRK-NYTAYRQ----EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eeeccCCCcceEEEeecc-ccccccc----CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            88764  49999999986 3221111    11111111223333445578888888899988888999999999875332


Q ss_pred             -eeEEecCCCCccce--eeecCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEEEEEccC--CCeEEE
Q 014644          340 -GITVEAGKNENRKP--ILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPT--TNLIAC  410 (421)
Q Consensus       340 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd--~~~la~  410 (421)
                       ...+.++...-.-+  ..+|+       ..+|++|+.|.. .+|   ..........+|...|+.++|.|.  .+.+.+
T Consensus       307 P~~~~sg~~~~sf~vks~lSpd-------~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc  379 (720)
T KOG0321|consen  307 PVAEFSGKLNSSFYVKSELSPD-------DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC  379 (720)
T ss_pred             chhhccCcccceeeeeeecCCC-------CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence             22233332221111  23344       348999999999 999   444566677899999999999776  556666


Q ss_pred             ecCCceEEEeC
Q 014644          411 ANGNSLFFHYA  421 (421)
Q Consensus       411 ~~~~~~~i~~~  421 (421)
                      ..+.++.||+.
T Consensus       380 SdD~~~kiW~l  390 (720)
T KOG0321|consen  380 SDDFRVKIWRL  390 (720)
T ss_pred             ccCcceEEEec
Confidence            33667999973

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.6e-22  Score=164.57  Aligned_cols=253  Identities=12%  Similarity=0.178  Sum_probs=183.6

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ++|.+.|++++|+.||++|+++ .|++|++|+++.-. +..+.+.   .+++  -+..+.+.|.||-...+++.-...++
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---~nve--~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR---QNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh---cccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence            8999999999999999999998 99999999997211 1111110   1111  13568899999985566666677889


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      ++|-+...+--     ....|.......++-..|.-.+-.+-...++++|++++. ..|.+|+++  ++.+..+...+..
T Consensus       158 ~vyk~~K~~dG-----~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~  230 (420)
T KOG2096|consen  158 CVYKLVKKTDG-----SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSS  230 (420)
T ss_pred             EEEEeeecccC-----CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeecccccc
Confidence            99987654311     011111111222334556777888888888999999976 899999997  8888877665543


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-------CceeEEecCCCCccceeeecCCccccc
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-------AGGITVEAGKNENRKPILQAAPRARRS  364 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (421)
                      .               +.++.||+|++|++++..-.|++|.+--+.       .....|.||.+.|...+|+++      
T Consensus       231 n---------------~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------  289 (420)
T KOG2096|consen  231 N---------------YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------  289 (420)
T ss_pred             c---------------cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------
Confidence            3               578999999999999999999999864321       235678999999999999998      


Q ss_pred             ccceeeeecccCc-ccCCCC------Ccccc-------ccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          365 SLSNLTRGLYRQA-HENSSS------GHHEL-------SYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       365 ~~~~l~~g~~d~~-~iw~~~------~~~~~-------~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                       ...+++.+.||. ++|+.+      +....       +..-......|+.+|.|+.||.+....|.+|++
T Consensus       290 -S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s  359 (420)
T KOG2096|consen  290 -STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS  359 (420)
T ss_pred             -cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence             348999999999 999332      11111       112233445899999999999999888888864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=3.8e-21  Score=171.43  Aligned_cols=228  Identities=11%  Similarity=0.065  Sum_probs=150.6

Q ss_pred             eEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE-EEcCCeEEEEEC
Q 014644          141 INSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDM  217 (421)
Q Consensus       141 v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d~~v~iwd~  217 (421)
                      +.+++|+|+++.+ +++ .++.|++||.. .++....+       ..+. .+..++|+|++ +.+++ ++.++.|++||+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~~-~~~~~~~~~~g-~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTL-------PSGP-DPELFALHPNG-KILYIANEDDNLVTVIDI  102 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEec-------cCCC-CccEEEECCCC-CEEEEEcCCCCeEEEEEC
Confidence            5679999999877 456 88999999998 44444332       2222 34678999999 66654 456899999999


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      ++.+..    ..+..              ...+..++|+|+|++++++..  ..+.+||.++ ++...........    
T Consensus       103 ~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~----  159 (300)
T TIGR03866       103 ETRKVL----AEIPV--------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVLVDQRP----  159 (300)
T ss_pred             CCCeEE----eEeeC--------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEEcCCCc----
Confidence            875432    22221              234678999999999988754  4577889875 5554443322222    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEecCC-----CC--ccceeeecCCcccccccc
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK-----NE--NRKPILQAAPRARRSSLS  367 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~  367 (421)
                                  ..++|+|++++|+++ ..++.|++||+.++ .....+..+.     ..  ...+.++++  ++     
T Consensus       160 ------------~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~d--g~-----  219 (300)
T TIGR03866       160 ------------RFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKD--GK-----  219 (300)
T ss_pred             ------------cEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCC--CC-----
Confidence                        478999999988654 46999999999987 3333333221     11  234667766  33     


Q ss_pred             ee-eeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEec--CCceEEEeC
Q 014644          368 NL-TRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHYA  421 (421)
Q Consensus       368 ~l-~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~~  421 (421)
                      .+ ++...++. .+|+.. ........+...+.+++|+|++++|++++  ++.|.+|+.
T Consensus       220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       220 TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            33 33333444 888432 22222223455788999999999998864  677999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=3.4e-21  Score=167.19  Aligned_cols=332  Identities=11%  Similarity=0.123  Sum_probs=225.8

Q ss_pred             ccccEEEEEEEEcCCCCeEEEE--eCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           32 IEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~--s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+..|.+++|++...|.+|+.-  +.+..+.+||.+.+. ......  .++.|....|+|.+..+.....          
T Consensus       153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~--sne~v~~a~FHPtd~nliit~G----------  220 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT--SNEVVFLATFHPTDPNLIITCG----------  220 (626)
T ss_pred             ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee--ccceEEEEEeccCCCcEEEEeC----------
Confidence            4678999999876667777665  567789999998765 222211  2333333444444333322221          


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                          .+.+.+|..+.+.-.+....+.+.....|.|++|.++|+ +++| .+|.|.||+.. ..+..+..       ..|.
T Consensus       221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~~-------~aH~  287 (626)
T KOG2106|consen  221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQV-------HAHD  287 (626)
T ss_pred             ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeEe-------eecC
Confidence                346788887776555555566334457799999999986 4678 99999999997 44444433       4799


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc-------chh-hhccc---------------cccCCCccccc
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SAR-ILRDA---------------AESHGSKSFFT  244 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------~~~-~~~~h---------------~~~~~~~~~~~  244 (421)
                      +.|.+++...+|  .|++|+.|+.|..||-.-.+....       ..+ +.+.+               ...........
T Consensus       288 ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  288 GGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             CceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            999999999998  456699999999998322111000       000 00000               00000111235


Q ss_pred             ccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          245 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       245 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                      +|......++.+|+...+++++. +.+++|+ .  .++..........                .++.|+|.| .+|.|+
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~----------------~~~~fhpsg-~va~Gt  425 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA----------------ECADFHPSG-VVAVGT  425 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce----------------eEeeccCcc-eEEEee
Confidence            67788899999999988888766 9999999 2  4444433332222                589999999 999999


Q ss_pred             CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccc--cccccCeEE
Q 014644          324 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS--YNLSSKLLH  398 (421)
Q Consensus       324 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~--~~~~~~v~~  398 (421)
                      ..|...+.|.++.  ....+.....++..+.|+|+       +.+||.|+.|+. .|+  +.++.....  +-+...|+.
T Consensus       426 ~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~-------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith  496 (626)
T KOG2106|consen  426 ATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPD-------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITH  496 (626)
T ss_pred             ccceEEEEecccc--eeEEEEecCCceEEEEEcCC-------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence            9999999999874  33344444889999999999       459999999999 888  333333322  122388999


Q ss_pred             EEEccCCCeEEEecCCc-eEEE
Q 014644          399 LAWHPTTNLIACANGNS-LFFH  419 (421)
Q Consensus       399 ~~~spd~~~la~~~~~~-~~i~  419 (421)
                      +.||+|+++|.+.+.|- |..|
T Consensus       497 LDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  497 LDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eeecCCCceEEeccCceEEEEE
Confidence            99999999999999654 7666

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.2e-24  Score=193.28  Aligned_cols=233  Identities=20%  Similarity=0.284  Sum_probs=197.1

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..|...|.++..-..++.+++| .|..+.||.+.......        .+.+|..+|.++.|++.. .+|++|+.+|+|+
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK   95 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence            5788889888887778899998 99999999987333322        248899999999999998 9999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +||+......    +.+.+             |...+.++.|+|-+.|.++|+. ..+++||.+. ..+...+.+|...+
T Consensus        96 ~wDleeAk~v----rtLtg-------------h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   96 VWDLEEAKIV----RTLTG-------------HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVV  157 (825)
T ss_pred             eeehhhhhhh----hhhhc-------------cccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCccee
Confidence            9999976543    44444             5889999999999999998865 9999999986 78888898877755


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG  372 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  372 (421)
                                     ..+.|+|+|++++.|++|..++|||+..+ .....+..|...+..+.|.|.       ..++++|
T Consensus       158 ---------------~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~-------e~Lla~G  214 (825)
T KOG0267|consen  158 ---------------DVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPL-------EVLLAPG  214 (825)
T ss_pred             ---------------EEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCch-------hhhhccC
Confidence                           67899999999999999999999999887 778889999999999999888       4589999


Q ss_pred             cccCc-ccCCCC--CccccccccccCeEEEEEccCCCeEEEecCCceE
Q 014644          373 LYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF  417 (421)
Q Consensus       373 ~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~  417 (421)
                      +.|+. ++|+..  +.+.........|.+++|+|++..+++|...++.
T Consensus       215 s~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  215 SSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             CCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            99999 999554  3444444557789999999999999999866554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.9e-24  Score=193.57  Aligned_cols=193  Identities=17%  Similarity=0.242  Sum_probs=164.6

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      .+|..+|.++.|+++..+|++| .+|+|++||++ ....++       ++.+|...+.++.|+|-+ .+.++++.|+.++
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~  137 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITSVDFHPYG-EFFASGSTDTDLK  137 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcceeeeccce-EEeccccccccce
Confidence            7999999999999999999999 99999999999 555565       458999999999999999 8999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +||.+...+.    +.+..             |...+..+.|+|+|++++.+++ ..++|||+.. ++....|..|+..+
T Consensus       138 iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v  199 (825)
T KOG0267|consen  138 IWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKV  199 (825)
T ss_pred             ehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceeeeecccc-cccccccccccccc
Confidence            9999965433    44444             4788999999999999999977 9999999985 99999999888765


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG  372 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  372 (421)
                                     ..+.|+|..-++++|+.|+++++||+++. ..+.........|.+.+|.++  ++     .+++|
T Consensus       200 ---------------~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~--~~-----~~~~G  256 (825)
T KOG0267|consen  200 ---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPD--GK-----IVLSG  256 (825)
T ss_pred             ---------------cccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCC--ce-----eeecC
Confidence                           67889999889999999999999999976 445555566788999999998  44     56666


Q ss_pred             cccCc
Q 014644          373 LYRQA  377 (421)
Q Consensus       373 ~~d~~  377 (421)
                      .....
T Consensus       257 ~q~sl  261 (825)
T KOG0267|consen  257 EQISL  261 (825)
T ss_pred             chhhh
Confidence            65544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.1e-20  Score=163.92  Aligned_cols=315  Identities=12%  Similarity=0.095  Sum_probs=217.7

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      .-|.|+.|  .++| -++||.++|.|.||+..+..+.+... .|.+            .++++..-.+++.+. |..  +
T Consensus       247 k~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~g------------gv~~L~~lr~GtllS-GgK--D  307 (626)
T KOG2106|consen  247 KFVLCVTF--LENG-DVITGDSGGNILIWSKGTNRISKQVH-AHDG------------GVFSLCMLRDGTLLS-GGK--D  307 (626)
T ss_pred             eEEEEEEE--cCCC-CEEeecCCceEEEEeCCCceEEeEee-ecCC------------ceEEEEEecCccEee-cCc--c
Confidence            45899999  4554 46899999999999997766433333 4444            555555555555555 433  3


Q ss_pred             cceeEEeeccc--------cee-----------------------------eeeeeecCCCCcceEEEeecCCCCEEEEE
Q 014644          114 MATKIANVGNS--------VHA-----------------------------RCQKVYPHAHDFNINSISNNSDCETFVSA  156 (421)
Q Consensus       114 ~~~~~~~~~~~--------~~~-----------------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  156 (421)
                      ..+..||-.-.        .+.                             ....+. .+|......++.+|+..+++++
T Consensus       308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh~delwgla~hps~~q~~T~  386 (626)
T KOG2106|consen  308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV-QGHGDELWGLATHPSKNQLLTC  386 (626)
T ss_pred             ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE-EecccceeeEEcCCChhheeec
Confidence            34445541110        000                             000122 5788889999999999999998


Q ss_pred             -cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccc
Q 014644          157 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  235 (421)
Q Consensus       157 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~  235 (421)
                       .|+.+++|+ + ....+..+         -..++.|+.|+|.|  .++.|...|...+.|..+...       +..|  
T Consensus       387 gqdk~v~lW~-~-~k~~wt~~---------~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l-------v~~~--  444 (626)
T KOG2106|consen  387 GQDKHVRLWN-D-HKLEWTKI---------IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL-------VTIH--  444 (626)
T ss_pred             cCcceEEEcc-C-CceeEEEE---------ecCceeEeeccCcc--eEEEeeccceEEEEeccccee-------EEEE--
Confidence             999999999 3 33333322         34778999999997  888999999999999988533       2222  


Q ss_pred             cCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          236 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                              .. ..+++.++|+|+|.+||.|+. +.|+||.+...+....+...+...              .++.+.||+
T Consensus       445 --------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~  501 (626)
T KOG2106|consen  445 --------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS--------------PITHLDWSS  501 (626)
T ss_pred             --------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc--------------eeEEeeecC
Confidence                    11 568999999999999999987 999999998767666665544431              127999999


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCCCcee-----------E------EecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644          315 DGLHFATGSYSNLLRIFSHGVGSAGGI-----------T------VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~  377 (421)
                      |++++.+.+.|-.|-.|.-....+...           +      ...+...++.++-+..       ...+|+|...|+
T Consensus       502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~-------~~~lA~gdd~g~  574 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHC-------EKLLASGDDFGK  574 (626)
T ss_pred             CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhh-------hhhhhccccCce
Confidence            999999999999999994332111000           0      0123333444443333       338899999999


Q ss_pred             -ccCC-----CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          378 -HENS-----SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       378 -~iw~-----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                       +++.     .........+|++-|++++|.-+...|++.+ +.++..|.
T Consensus       575 v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  575 VHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             EEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence             8882     2234456678999999999998888877766 66788885

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=7.1e-22  Score=162.63  Aligned_cols=327  Identities=13%  Similarity=0.172  Sum_probs=210.3

Q ss_pred             Cccccccc--cccccEEEEEEEEcC--C-CCeEEEEeCCCcEEEeecCCce-eE---EeeecCCCCCcccccccccccce
Q 014644           23 EFDYLKSL--EIEEKINRVRWCAAP--N-GSMFILSTNDKTIKLWKVRDQK-VK---KIKEMDHFPFVSSENTLLAEKNF   93 (421)
Q Consensus        23 ~~~~~~~~--~h~~~V~~v~~~~~~--~-~~~l~t~s~d~~v~lwd~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~   93 (421)
                      .|.+...+  +|+.+|..++|-+-.  + ...+||++. +.+.+|.....- ..   ......+.+            ..
T Consensus        26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~E------------sf   92 (385)
T KOG1034|consen   26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDE------------SF   92 (385)
T ss_pred             ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCc------------ce
Confidence            34444433  578889999993211  2 334555554 588899865433 22   222222222            33


Q ss_pred             eeccCC----CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCC
Q 014644           94 MNEHNP----PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLE  167 (421)
Q Consensus        94 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~  167 (421)
                      +.+++.    ....+++.++.  .+.+++.|+.+.   ++.+.+ .+|...|+.+.+.|+. ++++++ .|.+|++|+++
T Consensus        93 ytcsw~yd~~~~~p~la~~G~--~GvIrVid~~~~---~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   93 YTCSWSYDSNTGNPFLAAGGY--LGVIRVIDVVSG---QCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             EEEEEEecCCCCCeeEEeecc--eeEEEEEecchh---hhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            333322    23455665553  678999999888   888888 9999999999999965 677778 99999999999


Q ss_pred             CCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC------c-
Q 014644          168 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS------K-  240 (421)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~------~-  240 (421)
                       +..++.++.    -+.+|.+.|.++.|+++| .+|++++.|.+|++|++...+...+....+.- ...+..      . 
T Consensus       167 -~~~Cv~VfG----G~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~-~~~~t~~pfpt~~~  239 (385)
T KOG1034|consen  167 -TDVCVAVFG----GVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITY-SPNKTTRPFPTPKT  239 (385)
T ss_pred             -CCeEEEEec----ccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhccc-CCCCccCcCCcccc
Confidence             788888884    558999999999999999 89999999999999999965433211111110 000000      0 


Q ss_pred             -----ccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          241 -----SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       241 -----~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                           .....|...|.++.|-  |.++++-+- +.|..|....-++.+...+..+.....+....-..+-.+....+|.|
T Consensus       240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~  317 (385)
T KOG1034|consen  240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP  317 (385)
T ss_pred             ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence                 0124577888888887  788888654 89999987221222222222222222221111111111225678888


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcccccccccc
Q 014644          315 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS  394 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~  394 (421)
                      -+++||.|.+.|.|++||++........         .+.-+                                  ....
T Consensus       318 ~~~~la~gnq~g~v~vwdL~~~ep~~~t---------tl~~s----------------------------------~~~~  354 (385)
T KOG1034|consen  318 WQKMLALGNQSGKVYVWDLDNNEPPKCT---------TLTHS----------------------------------KSGS  354 (385)
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCccCc---------eEEec----------------------------------cccc
Confidence            8999999999999999999977332111         01111                                  0146


Q ss_pred             CeEEEEEccCCCeEEEecCC-ceEEEe
Q 014644          395 KLLHLAWHPTTNLIACANGN-SLFFHY  420 (421)
Q Consensus       395 ~v~~~~~spd~~~la~~~~~-~~~i~~  420 (421)
                      .|...+|+.|+.+|+..+++ .+.=|+
T Consensus       355 tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  355 TVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             eeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            78899999999998887754 466554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=3.3e-22  Score=162.25  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=169.7

Q ss_pred             CCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCce------eeeee-ecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          135 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ------CFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       135 ~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~------~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                      .-|.+.|+++...+ .|+++++| .||.|.+||++...+      ..+.. .+....-.+|...|.++.|-|-....+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            67999999999987 68999999 999999999974321      00000 01112336788999999999976578889


Q ss_pred             EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---CCEEEEecC-CeEEEEECCCCCcc
Q 014644          206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP  281 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-~~i~i~d~~~~~~~  281 (421)
                      ++.|.++++||..+-+..    ..|..              ++.|.+-+|+|-   ..++|+|.+ -+|++.|+.+ +..
T Consensus       120 sSFDhtlKVWDtnTlQ~a----~~F~m--------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~  180 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEA----VDFKM--------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSF  180 (397)
T ss_pred             ccccceEEEeecccceee----EEeec--------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccC-Ccc
Confidence            999999999999986543    34444              567888888884   447778876 8999999996 999


Q ss_pred             eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE-EEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      ...+.+|.+.+               .++.|+|...+ |++|+.||.|++||++.......++..|... +    .|   
T Consensus       181 sH~LsGHr~~v---------------laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-~----~p---  237 (397)
T KOG4283|consen  181 SHTLSGHRDGV---------------LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-R----PP---  237 (397)
T ss_pred             eeeeccccCce---------------EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-c----Cc---
Confidence            99999999866               89999998776 6899999999999999775666777766541 0    00   


Q ss_pred             ccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          361 ARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                                              .+.....|.+.|..++|+.|+.++++.+ ++++++||
T Consensus       238 ------------------------~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  238 ------------------------ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             ------------------------cccccccccceeeeeeecccchhhhhccCccceEEee
Confidence                                    1112345678899999999999988666 78899997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=8.6e-22  Score=160.35  Aligned_cols=235  Identities=12%  Similarity=0.139  Sum_probs=172.3

Q ss_pred             CCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ..-.+.|.+|+|||... +++++ .|++||+|+++..+....      ..+..|.++|.+++|+.+| ..+++|+.|+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~   96 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQA   96 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------hhhhccCCCeEEEEEccCC-ceEEeeccCCce
Confidence            44567899999999544 45466 999999999985444332      2346799999999999999 999999999999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--EEEEecC-CeEEEEECCCCCcceeEEeecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      ++||+.+++.     ..+..             |..+|..+.|-+...  .|++|+. .+|+.||++. ..++.++..++
T Consensus        97 k~wDL~S~Q~-----~~v~~-------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPe  157 (347)
T KOG0647|consen   97 KLWDLASGQV-----SQVAA-------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPE  157 (347)
T ss_pred             EEEEccCCCe-----eeeee-------------cccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccc
Confidence            9999999863     34445             488999999988655  7889986 9999999996 88888887766


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecCCcccccccce
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAAPRARRSSLSN  368 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  368 (421)
                      ..                ++  .+--..+++++..+..|.+|+++++..+..... .-.-.+++++...++.       .
T Consensus       158 Rv----------------Ya--~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-------~  212 (347)
T KOG0647|consen  158 RV----------------YA--ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-------G  212 (347)
T ss_pred             ee----------------ee--hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-------c
Confidence            42                22  222355788888999999999987644333322 2334567888877743       4


Q ss_pred             eeeecccCc-ccC--CCC--Cccccccccc---------cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          369 LTRGLYRQA-HEN--SSS--GHHELSYNLS---------SKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       369 l~~g~~d~~-~iw--~~~--~~~~~~~~~~---------~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .+.|+..|. .+.  +..  .......-|+         ..|.+++|||....|++++ ++.+.+|+
T Consensus       213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            588888888 555  221  1222222222         3688999999988888776 66688886

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7e-22  Score=169.86  Aligned_cols=234  Identities=16%  Similarity=0.115  Sum_probs=179.3

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      ..++|+++.-  +|.|.+|+.|+-.|.|.+|.+.+|.+                                          
T Consensus        80 ~Pg~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~L------------------------------------------  115 (476)
T KOG0646|consen   80 LPGPVHALAS--SNLGYFLLAGTISGNLYLWELSSGIL------------------------------------------  115 (476)
T ss_pred             cccceeeeec--CCCceEEEeecccCcEEEEEeccccH------------------------------------------
Confidence            4678999988  78899999998999999999999752                                          


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCC-CCCCccCCC
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEV  189 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~  189 (421)
                                        +.++ .+|-..|+++.|+.||.+|++| .||.|.+|.+..--........++ ..+..|+-+
T Consensus       116 ------------------L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls  176 (476)
T KOG0646|consen  116 ------------------LNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS  176 (476)
T ss_pred             ------------------HHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence                              2223 6899999999999999999999 999999998642111111001111 345889999


Q ss_pred             eeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          190 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       190 v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      |+.+...+.+ ..+|+++|.|.++++||+..+.+.    ..+..              ...+.+++++|.++.+..|+. 
T Consensus       177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             eEEEEecCCCccceEEEecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCc
Confidence            9999888764 368999999999999999998655    22222              468999999999999999976 


Q ss_pred             CeEEEEECCCCC---------------cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          268 MNLKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       268 ~~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      |.|.+.++....               ..+..+.+|....             .|++++.+-||..|++|+.||.++|||
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~-------------~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES-------------AITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCc-------------ceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            999988875311               1233344554411             237999999999999999999999999


Q ss_pred             cCCCCCceeEEecCCCCccceeeecCCc
Q 014644          333 HGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      +... +.++++....++|+.+.+.|-.+
T Consensus       306 i~S~-Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  306 IYSK-QCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             cchH-HHHHHHhhhccccceeEeecccc
Confidence            9976 66777777888898888866533

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=3.2e-22  Score=178.10  Aligned_cols=142  Identities=11%  Similarity=0.103  Sum_probs=111.7

Q ss_pred             ceeEEEEcC-CCCEEEEecC-CeEEEEECCCCC------cceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEE
Q 014644          249 SISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDS------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHF  319 (421)
Q Consensus       249 ~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l  319 (421)
                      .|+.+.|.| |.+.|+.+++ |.|++|.+...+      ++...+.+|...+               +++.|+|- ...|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI---------------~slRfHPLAadvL  693 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI---------------TSLRFHPLAADVL  693 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE---------------EEEEecchhhhHh
Confidence            467888888 6677887766 999999996532      3456677777654               79999994 6689


Q ss_pred             EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC---CCCCcccccccc-cc
Q 014644          320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNL-SS  394 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~-~~  394 (421)
                      +++++|.+|++||+.+. .....+.+|++.+..++|+|+  |+     .+|+-++||. +++   ...+.+....+- ..
T Consensus       694 a~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpd--Gr-----~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt  765 (1012)
T KOG1445|consen  694 AVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPD--GR-----RIATVCKDGTLRVYEPRSREQPVYEGKGPVGT  765 (1012)
T ss_pred             hhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCC--Cc-----ceeeeecCceEEEeCCCCCCCccccCCCCccC
Confidence            99999999999999998 778999999999999999999  55     8999999999 999   233333333222 23


Q ss_pred             CeEEEEEccCCCeEEEecC
Q 014644          395 KLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       395 ~v~~~~~spd~~~la~~~~  413 (421)
                      +-..+.|.-||+++++.+-
T Consensus       766 RgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  766 RGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             cceeEEEEecCcEEEEecc
Confidence            3456889999999988773

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.1e-22  Score=175.62  Aligned_cols=235  Identities=18%  Similarity=0.269  Sum_probs=183.8

Q ss_pred             ccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           26 YLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        26 ~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      |+.++ .|.+.|+.+..+  .+++.|+++|.|-+|++|+...+..                                   
T Consensus        65 ~~asme~HsDWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~-----------------------------------  107 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT-----------------------------------  107 (735)
T ss_pred             hhhhhhhhHhHHhhHHhh--cCCCceEEecCCceEEEeecccCcc-----------------------------------
Confidence            45555 478999999995  6688999999999999999876420                                   


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEee-cCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeec-CC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM-KP  180 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~-~~  180 (421)
                                             -|..++ ..|.+-|.|++. .++...+|+| -|+.|.+||++.... ++..++. ..
T Consensus       108 -----------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen  108 -----------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             -----------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence                                   344445 789999999999 7788888888 999999999984322 2222211 11


Q ss_pred             CCCC-ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          181 SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       181 ~~~~-~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      ..+. ++...|++++.++.| ..|++|+..+-+++||.++....    ..+             .+|...|..+..++||
T Consensus       164 ~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki----mkL-------------rGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI----MKL-------------RGHTDNVRVLLVNDDG  225 (735)
T ss_pred             ccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccce----eee-------------eccccceEEEEEcCCC
Confidence            2333 788999999999999 99999999999999999987533    222             3458999999999999


Q ss_pred             CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          260 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      ..+++++. |+|++||+.. .+++.++..|...+               +++..+|+-.++++|+.||.|+.=|+++. .
T Consensus       226 t~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~  288 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNP-A  288 (735)
T ss_pred             CeEeecCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCc-h
Confidence            99999865 9999999985 89999999999865               89999999999999999999999999985 3


Q ss_pred             ceeEEecCCCCccceeee
Q 014644          339 GGITVEAGKNENRKPILQ  356 (421)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~  356 (421)
                      ....+-....++..+...
T Consensus       289 ~~tlick~daPv~~l~~~  306 (735)
T KOG0308|consen  289 KSTLICKEDAPVLKLHLH  306 (735)
T ss_pred             hheEeecCCCchhhhhhc
Confidence            333333344444444443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=4e-21  Score=157.38  Aligned_cols=237  Identities=16%  Similarity=0.139  Sum_probs=177.3

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAY  205 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s  205 (421)
                      .++-.+ ..|.+.|++++.+  +.++|+| .|-+|+|||+....+.-        .+-.|.+.|+++.|.+.- ...|++
T Consensus        34 ~~lF~~-~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg--------~ll~HagsitaL~F~~~~S~shLlS  102 (362)
T KOG0294|consen   34 KPLFAF-SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG--------ILLSHAGSITALKFYPPLSKSHLLS  102 (362)
T ss_pred             eccccc-cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc--------ceeccccceEEEEecCCcchhheee
Confidence            344556 8999999999995  8999999 99999999998444433        235799999999999875 128999


Q ss_pred             EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeE
Q 014644          206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~  284 (421)
                      |+.||.|.+|+...-...    +.+..             |...|+.++.+|.|++.++- +|+.+++||+-+ ++....
T Consensus       103 ~sdDG~i~iw~~~~W~~~----~slK~-------------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v  164 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELL----KSLKA-------------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-GRVAFV  164 (362)
T ss_pred             ecCCCcEEEEEcCCeEEe----eeecc-------------cccccceeEecCCCceEEEEcCCceeeeehhhc-Ccccee
Confidence            999999999999875433    45545             47889999999999987764 569999999976 666555


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  364 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (421)
                      +......                ..+.|+|.|.+++.+.. ..|-||.+.+. .....+   ..+.+.....+..     
T Consensus       165 ~~L~~~a----------------t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A-~v~~~i---~~~~r~l~~~~l~-----  218 (362)
T KOG0294|consen  165 LNLKNKA----------------TLVSWSPQGDHFVVSGR-NKIDIYQLDNA-SVFREI---ENPKRILCATFLD-----  218 (362)
T ss_pred             eccCCcc----------------eeeEEcCCCCEEEEEec-cEEEEEecccH-hHhhhh---hccccceeeeecC-----
Confidence            5544443                46899999998887775 56888988765 221111   1222233333221     


Q ss_pred             ccceeeeecccCc-ccCCC--CCccccccccccCeEEEEE--ccCCCeEEEec-CCceEEEe
Q 014644          365 SLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAW--HPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       365 ~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~--spd~~~la~~~-~~~~~i~~  420 (421)
                       .+.|++|+.++. ++|+.  ........+|..+|-++.+  .|++.+|++++ ++.|.+|+
T Consensus       219 -~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  219 -GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             -CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence             347999999999 99943  4556677799999999884  67889999888 56699997

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=2.2e-21  Score=164.01  Aligned_cols=307  Identities=15%  Similarity=0.158  Sum_probs=202.8

Q ss_pred             cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      .++|..+.|  .+++. .++||+.|..|++|.+..++...       +                                
T Consensus        13 ~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~-------~--------------------------------   51 (434)
T KOG1009|consen   13 HEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGG-------G--------------------------------   51 (434)
T ss_pred             CCceEEEEe--ccCcccceecccCccceeeeeeeecCCCC-------C--------------------------------
Confidence            467899999  55544 99999999999999987754100       0                                


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC-------C-----ceeeeeeec
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-------S-----DQCFNIVDM  178 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~-------~-----~~~~~~~~~  178 (421)
                         ...+         +.+..+ ..|...|+++.|+|+|++||+| ++|.|.+|....       .     .+.+.+.  
T Consensus        52 ---~~~V---------~y~s~L-s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~--  116 (434)
T KOG1009|consen   52 ---DMKV---------EYLSSL-SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK--  116 (434)
T ss_pred             ---ceeE---------EEeecc-cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE--
Confidence               0001         333445 7899999999999999999999 999999997651       0     1111111  


Q ss_pred             CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       179 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                        ..+.+|...|+.++|+|++ .++++++.|.++++||+..+...    ..+..             |...+..++|.|-
T Consensus       117 --k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~d-------------h~~yvqgvawDpl  176 (434)
T KOG1009|consen  117 --KVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILDD-------------HEHYVQGVAWDPL  176 (434)
T ss_pred             --EEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----eeccc-------------cccccceeecchh
Confidence              2357899999999999999 99999999999999999998754    44444             4889999999999


Q ss_pred             CCEEEEec-CCeEEEEECCCCCcceeEEe-----e--ccCcccccccccCCCccee-eeEEEEcCCCCEEEEeeC----C
Q 014644          259 GQHLLSRD-YMNLKLWDIRMDSTPVATFK-----I--HEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSY----S  325 (421)
Q Consensus       259 ~~~l~~~~-~~~i~i~d~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~~s~----d  325 (421)
                      ++++++-+ +...+.+.+.. .+.++...     .  ..........+++++..-. ...++|+|+|.++++.+.    +
T Consensus       177 ~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  177 NQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            99999854 36566666653 22222111     1  1111112223444443321 167899999999987642    2


Q ss_pred             C-----eEEEEecCCCCCceeEEecCCCCccceeeecCCccc--cc---------ccceeeeecccCcccCCCCC--ccc
Q 014644          326 N-----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR--RS---------SLSNLTRGLYRQAHENSSSG--HHE  387 (421)
Q Consensus       326 g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~l~~g~~d~~~iw~~~~--~~~  387 (421)
                      +     ..++++-....+....+.+-..+.-.+.++|-.---  ..         -...+|.+..+...+++.+.  .+.
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~  335 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA  335 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence            2     346666555445566666666666555555531000  00         01244556666656664332  222


Q ss_pred             c-ccccccCeEEEEEccCCCeEEEecCCce
Q 014644          388 L-SYNLSSKLLHLAWHPTTNLIACANGNSL  416 (421)
Q Consensus       388 ~-~~~~~~~v~~~~~spd~~~la~~~~~~~  416 (421)
                      . .--|-..+++++|++||..|++.+.|+.
T Consensus       336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGy  365 (434)
T KOG1009|consen  336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGF  365 (434)
T ss_pred             EEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence            2 2235678999999999999999997764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.3e-21  Score=176.36  Aligned_cols=305  Identities=14%  Similarity=0.122  Sum_probs=224.7

Q ss_pred             ccccccEEEEEEEE----cCC-----CCeEEEEeCCCcEEEeecCCce---e-E-EeeecCC----------------CC
Q 014644           30 LEIEEKINRVRWCA----APN-----GSMFILSTNDKTIKLWKVRDQK---V-K-KIKEMDH----------------FP   79 (421)
Q Consensus        30 ~~h~~~V~~v~~~~----~~~-----~~~l~t~s~d~~v~lwd~~~~~---~-~-~~~~~~~----------------~~   79 (421)
                      +-|..-|..|+-.|    ++.     ...+.|+++|++||+|+++...   . + .+...+.                ..
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            45777777777654    111     3458999999999999987632   1 1 0100000                00


Q ss_pred             Cccc---ccccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC---CCCEE
Q 014644           80 FVSS---ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETF  153 (421)
Q Consensus        80 ~v~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l  153 (421)
                      .+.+   +....+..++.++..++++..++.|.-  ++.++++++...   +..... ..|..+|.||.++.   ..++|
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr--~GnlrVy~Lq~l---~~~~~~-eAHesEilcLeyS~p~~~~kLL  519 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR--GGNLRVYDLQEL---EYTCFM-EAHESEILCLEYSFPVLTNKLL  519 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECCCcceecccCc--cCceEEEEehhh---hhhhhe-ecccceeEEEeecCchhhhHhh
Confidence            1111   112223457889999999999999876  778999998765   444455 89999999999975   35688


Q ss_pred             EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhc
Q 014644          154 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILR  231 (421)
Q Consensus       154 ~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  231 (421)
                      |++ .|+-|.+||+..+-.++.       ++.+|...|+++.|.-+| ...+++++.|+.|.+--.+....    ..++.
T Consensus       520 ASasrdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~----g~~f~  588 (1080)
T KOG1408|consen  520 ASASRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS----GRLFP  588 (1080)
T ss_pred             hhccCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC----ceecc
Confidence            888 999999999985555554       458999999999998765 45788899998775433332110    12222


Q ss_pred             cccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644          232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  310 (421)
Q Consensus       232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      .|..        .-....+..++..|..++++++.. ..|+|||+.+ ++..+.|++.......+            ..+
T Consensus       589 r~t~--------t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~l------------IKv  647 (1080)
T KOG1408|consen  589 RHTQ--------TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDL------------IKV  647 (1080)
T ss_pred             cccc--------ccccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCce------------EEE
Confidence            2111        111457899999999999998865 9999999997 99999998765432222            478


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          311 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       311 ~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ...|.|-||++...|.++.++|..++ +......||...|+.+.|.++  .+     .|++.+.||. -+|
T Consensus       648 ~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nD--Ck-----HlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  648 ILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLND--CK-----HLISVSGDGCIFVW  710 (1080)
T ss_pred             EECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeeccc--ch-----hheeecCCceEEEE
Confidence            99999999999999999999999998 788899999999999999998  44     8999999999 999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.2e-21  Score=166.55  Aligned_cols=245  Identities=16%  Similarity=0.159  Sum_probs=192.0

Q ss_pred             eeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee-----------cCCCCCCccCCCeeEEEEec
Q 014644          130 QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD-----------MKPSNMDDLTEVITSAEFHP  197 (421)
Q Consensus       130 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~p  197 (421)
                      .+.+ ..|.-+|.+++++|+.++.+++ .+++|.-|++.++.....++.           .++.. ..|...+.+++.+|
T Consensus       135 ~~~~-~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVI-GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS  212 (479)
T ss_pred             ceee-ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence            4455 7899999999999999999999 999999999984432211111           11112 37889999999999


Q ss_pred             CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECC
Q 014644          198 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIR  276 (421)
Q Consensus       198 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~  276 (421)
                      |+ ++|++|+.|..|.||+.++....    +.+.+             |.+.|.+++|-..-..+.+++ |+.+++|++.
T Consensus       213 Dg-kylatgg~d~~v~Iw~~~t~ehv----~~~~g-------------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  213 DG-KYLATGGRDRHVQIWDCDTLEHV----KVFKG-------------HRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             CC-cEEEecCCCceEEEecCcccchh----hcccc-------------cccceeeeeeecCccceeeeecCCceEEEehh
Confidence            99 99999999999999999986543    55555             599999999987666666654 5999999998


Q ss_pred             CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644          277 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  356 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  356 (421)
                      . ...+.++.+|+..+               .++....-++.+.+|+.|+++++|++.  ......+.++.+.+.+++|-
T Consensus       275 ~-~s~vetlyGHqd~v---------------~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  275 Q-LSYVETLYGHQDGV---------------LGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             H-hHHHHHHhCCccce---------------eeechhcccceEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEe
Confidence            5 77788888998865               566666677888888899999999995  35567788999899999987


Q ss_pred             cCCcccccccceeeeecccCc-ccCCCC--Cccc------------cccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          357 AAPRARRSSLSNLTRGLYRQA-HENSSS--GHHE------------LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       357 ~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~------------~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .+        ..+++|+.+|. .+|..-  .++.            ....+..+|++++..|...++|+|+ ++.+++|.
T Consensus       337 n~--------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  337 ND--------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             cc--------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            65        37999999999 999221  1111            1112234899999999999999999 77799996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.2e-21  Score=164.11  Aligned_cols=249  Identities=13%  Similarity=0.066  Sum_probs=190.1

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  193 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  193 (421)
                      .+.+|.+.......   .+ .--.+.|.+++-+|+|.+|+.| ..+.|++|.+. .+.++.++       ..|-..|+++
T Consensus        62 ~l~vw~i~k~~~~~---q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~-------~aHYQ~ITcL  129 (476)
T KOG0646|consen   62 LLHVWEILKKDQVV---QY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVL-------SAHYQSITCL  129 (476)
T ss_pred             cccccccCchhhhh---hh-cccccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHH-------HhhccceeEE
Confidence            56778776542222   11 2346789999999999999999 99999999999 67777654       7899999999


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeE
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNL  270 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i  270 (421)
                      .|+-|+ .+|++|+.||.|.+|++..--      .....  ..+.....+..|.-+|+.+...+.  ..++++++. .++
T Consensus       130 ~fs~dg-s~iiTgskDg~V~vW~l~~lv------~a~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~  200 (476)
T KOG0646|consen  130 KFSDDG-SHIITGSKDGAVLVWLLTDLV------SADND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI  200 (476)
T ss_pred             EEeCCC-cEEEecCCCccEEEEEEEeec------ccccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence            999999 999999999999999875421      11111  134445567778999999998875  346777665 999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-------------
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-------------  337 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-------------  337 (421)
                      ++||+.. +..+.++.-+...                .+++.+|-++.++.|+.+|.|.+.++....             
T Consensus       201 k~wdlS~-g~LLlti~fp~si----------------~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~  263 (476)
T KOG0646|consen  201 KLWDLSL-GVLLLTITFPSSI----------------KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE  263 (476)
T ss_pred             EEEEecc-ceeeEEEecCCcc----------------eeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence            9999986 8777777654433                699999999999999999999998876532             


Q ss_pred             --CceeEEecCCC--CccceeeecCCcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeE
Q 014644          338 --AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       338 --~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~l  408 (421)
                        .....+.+|.+  +|.+++.+.+       +.+|++|+.||+ .+|+..  ..+.......++|+.+.+.|--+-.
T Consensus       264 ~~t~~~~~~Gh~~~~~ITcLais~D-------gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~  334 (476)
T KOG0646|consen  264 ENTQINVLVGHENESAITCLAISTD-------GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGI  334 (476)
T ss_pred             ccceeeeeccccCCcceeEEEEecC-------ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccce
Confidence              23556778988  9999999998       449999999999 999443  2333333367889999886654433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=2.4e-21  Score=174.20  Aligned_cols=228  Identities=13%  Similarity=0.170  Sum_probs=183.7

Q ss_pred             cccccEEE-EEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~-v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      +|.+-|.. +++.+ .++..+++|+.|++|.+|...+.                                          
T Consensus        55 ~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~------------------------------------------   91 (745)
T KOG0301|consen   55 GPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQA------------------------------------------   91 (745)
T ss_pred             cCcceeeccceecc-ccCcceEeecccceEEEEecCCC------------------------------------------
Confidence            35555665 77743 45566888999999888887664                                          


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        .++.++ .+|...|.+++...++. +++| .|.++++|-..   ++..       .+.+|+.
T Consensus        92 ------------------~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~gH~a  141 (745)
T KOG0301|consen   92 ------------------EPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQGHTA  141 (745)
T ss_pred             ------------------Cchhhh-hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccCCcch
Confidence                              444556 89999999999888887 8888 99999999875   3332       2489999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  268 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  268 (421)
                      .|+++..-|.+  .+++|+.|.+|++|.-.+  .    .+++.+|             .+.|+.+++-+++.++-++.||
T Consensus       142 sVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~----l~tf~gH-------------tD~VRgL~vl~~~~flScsNDg  200 (745)
T KOG0301|consen  142 SVWAVASLPEN--TYVTGSADKTIKLWKGGT--L----LKTFSGH-------------TDCVRGLAVLDDSHFLSCSNDG  200 (745)
T ss_pred             heeeeeecCCC--cEEeccCcceeeeccCCc--h----hhhhccc-------------hhheeeeEEecCCCeEeecCCc
Confidence            99999999985  889999999999998532  2    3666664             8999999999988777777789


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .|++|++.  ++.+..+.+|+..+               ++++..+++..++++++|++++||+..   ...+.++-...
T Consensus       201 ~Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtt  260 (745)
T KOG0301|consen  201 SIRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTT  260 (745)
T ss_pred             eEEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCcc
Confidence            99999993  89999999999876               788888888999999999999999976   55666666666


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .++++.+-+.  |      -+++|+.||. ++|
T Consensus       261 siWsa~~L~N--g------DIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  261 SIWSAKVLLN--G------DIVVGGSDGRVRVF  285 (745)
T ss_pred             ceEEEEEeeC--C------CEEEeccCceEEEE
Confidence            7777777654  2      5899999999 999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=5.1e-20  Score=168.99  Aligned_cols=310  Identities=13%  Similarity=0.140  Sum_probs=203.0

Q ss_pred             cccccccc-ccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           26 YLKSLEIE-EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        26 ~~~~~~h~-~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .+.++.|. ++|+.++|  ..||+ .||+|+..|.+.+||++..++.......|.+.+....+.+            ...
T Consensus       236 il~sFk~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~------------~ep  301 (910)
T KOG1539|consen  236 ILMSFKQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP------------GEP  301 (910)
T ss_pred             EEEEEEccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC------------CCc
Confidence            45567886 89999999  56765 6777788899999999998755444434433333222222            222


Q ss_pred             eeeecccccccceeEEeecccce-eeeeeeecCCCCcceEEEeec-CCCCEEEEE-cCCcEEEEeCCCC------cee--
Q 014644          104 HGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEIS------DQC--  172 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~-~d~~i~lwd~~~~------~~~--  172 (421)
                      .+.+.+.  +...++|-.+++.. .+.++.. .||..+..++.|. .+|.++.++ .|++++.+++...      ++.  
T Consensus       302 Vl~ta~~--DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  302 VLVTAGA--DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             eEeeccC--CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            2222222  23345554433221 2455555 7899999999986 678888887 8888777765311      000  


Q ss_pred             ------eeee-----ec--------------------------------------------CCCCCCccCCCeeEEEEec
Q 014644          173 ------FNIV-----DM--------------------------------------------KPSNMDDLTEVITSAEFHP  197 (421)
Q Consensus       173 ------~~~~-----~~--------------------------------------------~~~~~~~~~~~v~~~~~~p  197 (421)
                            +...     .+                                            ++..+......+++++.++
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence                  0000     00                                            0011122336788999999


Q ss_pred             CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECC
Q 014644          198 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  276 (421)
Q Consensus       198 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~  276 (421)
                      -| ++.+.|+..|.|-+|++.+|-..    ..+..          -+.|..+|++++...-++.+++++. |.+++||..
T Consensus       459 CG-NF~~IG~S~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  459 CG-NFVFIGYSKGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             cC-ceEEEeccCCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence            99 99999999999999999997543    33321          1456899999999998988988765 999999997


Q ss_pred             CCCcceeEEeeccCcccc---------------------------ccc--ccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644          277 MDSTPVATFKIHEHLRPK---------------------------LCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNL  327 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~---------------------------~~~--~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~  327 (421)
                      . +.+...++........                           +..  ..+.+.|   ++++|||||+||++++.|++
T Consensus       524 ~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri---td~~FS~DgrWlisasmD~t  599 (910)
T KOG1539|consen  524 K-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI---TDMTFSPDGRWLISASMDST  599 (910)
T ss_pred             C-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce---eeeEeCCCCcEEEEeecCCc
Confidence            5 4433333221111000                           000  0123333   89999999999999999999


Q ss_pred             EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC
Q 014644          328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN  380 (421)
Q Consensus       328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw  380 (421)
                      |++||+.++ .++-.+ .-..+...+.++|.       +.+||+...|..  .+|
T Consensus       600 Ir~wDlpt~-~lID~~-~vd~~~~sls~SPn-------gD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  600 IRTWDLPTG-TLIDGL-LVDSPCTSLSFSPN-------GDFLATVHVDQNGIYLW  645 (910)
T ss_pred             EEEEeccCc-ceeeeE-ecCCcceeeEECCC-------CCEEEEEEecCceEEEE
Confidence            999999998 332222 23567788999998       559999998865  899

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=1.5e-20  Score=152.24  Aligned_cols=304  Identities=15%  Similarity=0.187  Sum_probs=204.2

Q ss_pred             CCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce------
Q 014644           55 NDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH------  126 (421)
Q Consensus        55 ~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------  126 (421)
                      .|+.|.+-+++.+.  +....-.++.++|+.++..|.+.++++..++.....      .......+|.+.....      
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s------~vl~~aaiw~ipe~~~~S~~~t  111 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDS------GVLTGAAIWQIPEPLGQSNSST  111 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCC------cceeeEEEEecccccCccccch
Confidence            46778877766544  444455677888998888888888887665422111      0011456787765432      


Q ss_pred             eeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEE
Q 014644          127 ARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA  204 (421)
Q Consensus       127 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~  204 (421)
                      .+++..+...+-+.|.|+.|.|++..|++-.|..|.+|++......+..+  +...-.++....++-+|+|  ++ +.++
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev--~ss~s~e~~~~ftsg~WspHHdg-nqv~  188 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEV--LSSESAEMRHSFTSGAWSPHHDG-NQVA  188 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheee--cccccccccceecccccCCCCcc-ceEE
Confidence            35555664466679999999999999998889999999998554433332  1112234566788889999  44 5565


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcce
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPV  282 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~  282 (421)
                      + ..|++++.||+|+....   ..+-+             .|...|..+.|+|+.+++ ++++| |.|+|||.++...++
T Consensus       189 t-t~d~tl~~~D~RT~~~~---~sI~d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv  251 (370)
T KOG1007|consen  189 T-TSDSTLQFWDLRTMKKN---NSIED-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV  251 (370)
T ss_pred             E-eCCCcEEEEEccchhhh---cchhh-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc
Confidence            4 56899999999986432   12222             346789999999997755 56666 999999999888999


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA  361 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (421)
                      +.+.+|..++               +++.|+|. .++|++|+.|..|.+|....-..+.+....+...-....-+..   
T Consensus       252 ~el~~HsHWv---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee---  313 (370)
T KOG1007|consen  252 QELPGHSHWV---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE---  313 (370)
T ss_pred             cccCCCceEE---------------EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH---
Confidence            9999999976               89999995 6788999999999999877643222221111111000000000   


Q ss_pred             cccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccCCCe-EEEec-CCceEE
Q 014644          362 RRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNL-IACAN-GNSLFF  418 (421)
Q Consensus       362 ~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~-la~~~-~~~~~i  418 (421)
                                      +.= -.++.+.....|+..|.+++||.-.++ +|+-+ ++++.|
T Consensus       314 ----------------r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  314 ----------------RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ----------------hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence                            100 112345566688999999999988877 55666 555554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=2.1e-20  Score=160.44  Aligned_cols=260  Identities=15%  Similarity=0.206  Sum_probs=180.2

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccc-eeeccCCCCceeee
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSFAHGY  106 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~  106 (421)
                      -|.++|++++|.|..+-+++|+|..-|+|-+||+.+.+   -.......|..+|.++.|++.+.. +++.+.        
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--------  255 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--------  255 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc--------
Confidence            36789999999766666899999999999999995332   222333445566777777665432 334333        


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                            ++++++-|++.....+.. .+ ......+.++.|+.+...++.+ .=|...+||.++.+..+..       +.-
T Consensus       256 ------DGtiR~~D~~~~i~e~v~-s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~l  320 (498)
T KOG4328|consen  256 ------DGTIRLQDFEGNISEEVL-SL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRL  320 (498)
T ss_pred             ------CceeeeeeecchhhHHHh-hc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhh
Confidence                  667788887765222221 11 2244557788888887777777 6669999999977665543       366


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...|.+++++|..+.+|++++.|++++|||+|.-.....+  .+.           ...|...|.+..|||.+-.|++.
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp--~ls-----------t~~HrrsV~sAyFSPs~gtl~TT  387 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP--FLS-----------TLPHRRSVNSAYFSPSGGTLLTT  387 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc--cee-----------cccccceeeeeEEcCCCCceEee
Confidence            88899999999999899999999999999999975432210  111           23458899999999987777776


Q ss_pred             cC-CeEEEEECC---CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          266 DY-MNLKLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       266 ~~-~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +. ..|+|||..   ..-.+..++. |.....+.         ...+...|.|+..++++|-.-..|-|+|-..+
T Consensus       388 ~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rw---------lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  388 CQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRW---------LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             ccCCceEEeecccccccCCccceee-ccCccccc---------ccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            54 999999983   1133333332 22211100         01146799999999999999999999996655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.2e-20  Score=158.83  Aligned_cols=231  Identities=16%  Similarity=0.135  Sum_probs=171.4

Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeee-----------------cCCCCcceEEEeecCC-CCEEEEE-cCCc
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-----------------PHAHDFNINSISNNSD-CETFVSA-DDLR  160 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~~~-~~~l~s~-~d~~  160 (421)
                      ..+.+.+-|.+  +..|.|||+.......+.-++                 ..+|+..|.+|+|+.. ...||+| .|.+
T Consensus       190 ~~gNyvAiGtm--dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  190 GAGNYVAIGTM--DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT  267 (463)
T ss_pred             CCcceEEEecc--CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence            34567788877  348999998764332332222                 1369999999999875 4567777 9999


Q ss_pred             EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc
Q 014644          161 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  240 (421)
Q Consensus       161 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~  240 (421)
                      |++||+. .+++..++       .-|...|.++.|+|..+..|++|+.|++|++.|.|.....   ...|..        
T Consensus       268 V~lWD~~-~g~p~~s~-------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~wk~--------  328 (463)
T KOG0270|consen  268 VKLWDVD-TGKPKSSI-------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEWKF--------  328 (463)
T ss_pred             EEEEEcC-CCCcceeh-------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceEEe--------
Confidence            9999999 66776654       6789999999999999899999999999999999963211   244554        


Q ss_pred             ccccccccceeEEEEcCCCCE-EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CC
Q 014644          241 SFFTEIIASISDIKFANDGQH-LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GL  317 (421)
Q Consensus       241 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~  317 (421)
                            .+.|..++|.|.... ++++++ |+++-+|+|..++++.+++.|...+               .++++++. ..
T Consensus       329 ------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I---------------Sgl~~n~~~p~  387 (463)
T KOG0270|consen  329 ------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI---------------SGLSVNIQTPG  387 (463)
T ss_pred             ------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc---------------ceEEecCCCCc
Confidence                  578999999997654 445555 9999999999889999999999976               68888875 55


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceeEEecCC---CCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          318 HFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       318 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ++++++.|+.|++|++.......  ...|.   +...+.++.|+.+      ..|+.|+..+. ++|
T Consensus       388 ~l~t~s~d~~Vklw~~~~~~~~~--v~~~~~~~~rl~c~~~~~~~a------~~la~GG~k~~~~vw  446 (463)
T KOG0270|consen  388 LLSTASTDKVVKLWKFDVDSPKS--VKEHSFKLGRLHCFALDPDVA------FTLAFGGEKAVLRVW  446 (463)
T ss_pred             ceeeccccceEEEEeecCCCCcc--cccccccccceeecccCCCcc------eEEEecCccceEEEe
Confidence            78899999999999998653211  11111   1123344444422      36788888887 999

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=8.4e-21  Score=169.18  Aligned_cols=264  Identities=17%  Similarity=0.214  Sum_probs=185.8

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ...+.|...|-.++|  -|...+|++++.|.++++||+.+..+...                                  
T Consensus        94 k~~~aH~nAifDl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~----------------------------------  137 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKW--APGESLLVSASGDSTIRPWDVKTSRLVGG----------------------------------  137 (720)
T ss_pred             cccccccceeEeecc--CCCceeEEEccCCceeeeeeeccceeecc----------------------------------
Confidence            445689999999999  56778999999999999999988652211                                  


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCcee------eeee--
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC------FNIV--  176 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~------~~~~--  176 (421)
                                              +.+ .||...|.+++|.|... .+++| .||.|.|||++-+...      .++.  
T Consensus       138 ------------------------~~~-~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  138 ------------------------RLN-LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             ------------------------eee-cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence                                    123 69999999999999655 55667 9999999998743300      0000  


Q ss_pred             ------ecCC-----CCCCccCCCeeE---EEEecCCCCeEEEEEc-CCeEEEEECCcccccccchhhhccccccCCCcc
Q 014644          177 ------DMKP-----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKS  241 (421)
Q Consensus       177 ------~~~~-----~~~~~~~~~v~~---~~~~p~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  241 (421)
                            ..++     .....+...|.+   +.+..|+ ..||+++. |+.|++||++.....      +..   .+....
T Consensus       193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~------~r~---ep~~~~  262 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTA------YRQ---EPRGSD  262 (720)
T ss_pred             ccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccc------ccc---CCCccc
Confidence                  0000     112334455555   5666777 88998887 999999999986432      111   111111


Q ss_pred             ccccc---ccceeEEEEcCCCCEEEE-ecCCeEEEEECCCCC-cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC
Q 014644          242 FFTEI---IASISDIKFANDGQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  316 (421)
Q Consensus       242 ~~~~~---~~~v~~~~~s~~~~~l~~-~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  316 (421)
                      .+..|   .-.+.++.....|.+|++ +.|+.|++|++...+ .++..+.++...           .++  ..-..+|++
T Consensus       263 ~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~  329 (720)
T KOG0321|consen  263 KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDD  329 (720)
T ss_pred             CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCC
Confidence            11112   335667777777787765 567999999997532 344444443321           111  344678999


Q ss_pred             CEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          317 LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       317 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .+|++|+.|...++|.+.+.+.....+.+|.-.|..+.|.|.....      +++.++|.. ++|
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~------v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP------VATCSDDFRVKIW  388 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC------ceeeccCcceEEE
Confidence            9999999999999999999877888999999999999999986544      566688888 999

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=5.8e-20  Score=150.30  Aligned_cols=244  Identities=12%  Similarity=0.083  Sum_probs=181.8

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      +-...+.|+.++.+++|   .+...+++|+.||.|+++|+.+++...                                 
T Consensus        46 ~l~~~~~~~~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~---------------------------------   89 (323)
T KOG1036|consen   46 SLKLKFKHGAPLLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQ---------------------------------   89 (323)
T ss_pred             hhhhheecCCceeeeec---cCCceEEEeccCceEEEEEecCCccee---------------------------------
Confidence            44556789999999999   567889999999999999999865211                                 


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                                  + ..|...|+|+..++....+++| .|++|++||.+ .......+       
T Consensus        90 ----------------------------i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~~-------  132 (323)
T KOG1036|consen   90 ----------------------------I-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGTF-------  132 (323)
T ss_pred             ----------------------------e-ccCCCceEEEEeeccCCeEEEcccCccEEEEecc-cccccccc-------
Confidence                                        1 5789999999999987788888 99999999998 33333222       


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                       .....|.++..+  + +.|+.|+.|..+.+||+++.....   +.-+            ...+-.+.++++-|++.-.+
T Consensus       133 -d~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~---q~re------------S~lkyqtR~v~~~pn~eGy~  193 (323)
T KOG1036|consen  133 -DQGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPF---QRRE------------SSLKYQTRCVALVPNGEGYV  193 (323)
T ss_pred             -ccCceEEEEecc--C-CEEEEeecCceEEEEEcccccchh---hhcc------------ccceeEEEEEEEecCCCceE
Confidence             123478887765  4 678899999999999999865321   1000            01144789999999877666


Q ss_pred             Eec-CCeEEEEECCCC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          264 SRD-YMNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       264 ~~~-~~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      .++ +|.|.+=.++..   ...-..|+.|....      ...+-++.|.+++|+|-.+.++||+.||.|.+||+.+. +.
T Consensus       194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Kr  266 (323)
T KOG1036|consen  194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KR  266 (323)
T ss_pred             EEeecceEEEEccCCchHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hh
Confidence            665 588877666542   13344567776542      34456678899999999999999999999999999987 56


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecc
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY  374 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  374 (421)
                      ...+......|.+++|+.+       +..||.++.
T Consensus       267 l~q~~~~~~SI~slsfs~d-------G~~LAia~s  294 (323)
T KOG1036|consen  267 LKQLAKYETSISSLSFSMD-------GSLLAIASS  294 (323)
T ss_pred             hhhccCCCCceEEEEeccC-------CCeEEEEec
Confidence            6667777778899999988       447887764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=1.9e-21  Score=168.65  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=184.9

Q ss_pred             CCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCcee--eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          136 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      .|.+-|-++..+...+.+.+|..|.|+|||+...+..  +..+     ......+.|+++.+.||| +.|++|+.-.++.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL-----dcl~rdnyiRSckL~pdg-rtLivGGeastls  490 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL-----DCLNRDNYIRSCKLLPDG-RTLIVGGEASTLS  490 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccc-----cccCcccceeeeEecCCC-ceEEeccccceee
Confidence            6888888999999999999999999999999743322  2221     123345789999999999 8999999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      |||+.......+     ..          ++.....+.+++.+||.+..+++ ++|.|.|||+++ ...+..|++|....
T Consensus       491 iWDLAapTprik-----ae----------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  491 IWDLAAPTPRIK-----AE----------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGA  554 (705)
T ss_pred             eeeccCCCcchh-----hh----------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCc
Confidence            999987653211     00          11113467889999999988876 569999999996 88999999999866


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--CCCccceeeecCCcccccccceee
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLSNLT  370 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~  370 (421)
                                     .++.+++||..|-+|+-|++||-||++++.+    ++.|  .+.|.++..+|.       ...|+
T Consensus       555 ---------------scIdis~dGtklWTGGlDntvRcWDlregrq----lqqhdF~SQIfSLg~cP~-------~dWla  608 (705)
T KOG0639|consen  555 ---------------SCIDISKDGTKLWTGGLDNTVRCWDLREGRQ----LQQHDFSSQIFSLGYCPT-------GDWLA  608 (705)
T ss_pred             ---------------eeEEecCCCceeecCCCccceeehhhhhhhh----hhhhhhhhhheecccCCC-------cccee
Confidence                           7899999999999999999999999998733    2233  355677777777       45899


Q ss_pred             eecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          371 RGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       371 ~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .|-.++. .+- ..+.....+..|+..|.++.|.+.|+++++.+ +|-+-.|.
T Consensus       609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence            9988877 555 45555666678899999999999999999988 44465653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.7e-20  Score=161.05  Aligned_cols=245  Identities=16%  Similarity=0.171  Sum_probs=184.3

Q ss_pred             CCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          135 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      +-+.++|++++|+|..  +++++| ..|.|-+||+.+.++....+    ..+..|..+|.++.|+|.....+++.|.||+
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence            5678999999999965  467778 89999999995222211111    1237899999999999988789999999999


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccC
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      |++-|+......    .++..           .........+.|+.+...++.++. |...+||+++.+.....+..|..
T Consensus       259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence            999999875421    11211           111456788899998888888887 99999999997777777878877


Q ss_pred             cccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCc---eeEEecCCCCccceeeecCCccccccc
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      .+               .+++++|. ..+|++++.|++.+|||++.-...   ....-.|.-.|.+..|+|.       .
T Consensus       324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-------~  381 (498)
T KOG4328|consen  324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-------G  381 (498)
T ss_pred             cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-------C
Confidence            54               79999995 567899999999999999875332   2455689999999999999       3


Q ss_pred             ceeeeecccCc-ccCCCC-----Cccccccccc----c--CeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          367 SNLTRGLYRQA-HENSSS-----GHHELSYNLS----S--KLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw~~~-----~~~~~~~~~~----~--~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ..|++.+.|.. +||+..     ......+.|.    .  ......|.|+.+++++|. ...|-||+
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            36899998888 999442     1222222332    2  234679999999999998 45576665

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.1e-21  Score=184.13  Aligned_cols=256  Identities=16%  Similarity=0.160  Sum_probs=193.0

Q ss_pred             cccccccccEEEEEEEEcCCC--CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           27 LKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~--~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      ..++.-..+-+.++|++..++  .++|.|..||.|.+||...-.    ..  ..                          
T Consensus        58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----~~--~~--------------------------  105 (1049)
T KOG0307|consen   58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----AN--AS--------------------------  105 (1049)
T ss_pred             cccccccccceeeeecccCCCccceeeccccCCceEEecchhhc----cC--cc--------------------------
Confidence            334445667899999644333  259999999999999976520    00  00                          


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                            ...+..+ ..|++.|..+.|++.+. +||+| +||.|.|||++........-      
T Consensus       106 ----------------------~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------  156 (1049)
T KOG0307|consen  106 ----------------------EEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG------  156 (1049)
T ss_pred             ----------------------hHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC------
Confidence                                  0333444 78999999999999655 89999 99999999998433333210      


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-E
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-H  261 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~  261 (421)
                      -....+.|.+++|+..-.+.|++++.+|.+.|||++..+.+.+    +..|           .....+..++|+|++- .
T Consensus       157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~----ls~~-----------~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK----LSDT-----------PGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc----cccC-----------CCccceeeeeeCCCCcee
Confidence            1224578999999988768899999999999999998754311    1110           0024578999999854 3


Q ss_pred             EEE--ecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCC
Q 014644          262 LLS--RDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       262 l~~--~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |++  .++  -.|.+||+|....+++.+++|+..+               .++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            333  344  7899999998888999999999865               899999965 88999999999999999997


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                       +.+..+....+++..+.|+|..++      .++..+-+|. .|+
T Consensus       287 -Evl~~~p~~~nW~fdv~w~pr~P~------~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  287 -EVLGELPAQGNWCFDVQWCPRNPS------VMAAASFDGKISIY  324 (1049)
T ss_pred             -eEeeecCCCCcceeeeeecCCCcc------hhhhheeccceeee
Confidence             677778888899999999998654      5888999999 888

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.7e-20  Score=158.91  Aligned_cols=264  Identities=16%  Similarity=0.136  Sum_probs=192.7

Q ss_pred             cEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCc--eeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           35 KINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        35 ~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      .+.+++|.  .... ..++.+.|+.+++|.-...  ++.........             .-.|++......++..|+. 
T Consensus        36 g~~s~~w~--~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-------------~~~Cv~~~s~S~y~~sgG~-   99 (673)
T KOG4378|consen   36 GDFSFNWQ--RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-------------NAFCVACASQSLYEISGGQ-   99 (673)
T ss_pred             cceeeecc--ccceEEEeecCCceeEEEecccCCCCccceeeccccc-------------hHHHHhhhhcceeeeccCc-
Confidence            48999993  3322 2334467889999985443  22222111111             1223333333455666554 


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                       ..+++|||+...   .+.+.+ .+|...|+++.++....+||++ ..|-|.|..+.+ ++.-..+.      .+....|
T Consensus       100 -~~~Vkiwdl~~k---l~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~------~~sgqsv  167 (673)
T KOG4378|consen  100 -SGCVKIWDLRAK---LIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFT------IDSGQSV  167 (673)
T ss_pred             -CceeeehhhHHH---HHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Ccccccee------cCCCCeE
Confidence             668999999865   667777 9999999999999999999999 899999999984 33332221      2223456


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-Eec-CC
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YM  268 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~~  268 (421)
                      +-+.|+|....+|.+++.+|.|.+||+......   ...             ...|..+...|+|+|..+.|+ +-+ |.
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~-------------~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHA-------------SEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcc---cch-------------hhhccCCcCcceecCCccceEEEecccc
Confidence            789999998677888999999999999876533   112             234588999999999766555 434 59


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .|.+||.+. ......+......                ..++|+++|.+|+.|+..|.|+.||++.....+.++.+|..
T Consensus       232 ki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~  294 (673)
T KOG4378|consen  232 KINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA  294 (673)
T ss_pred             eEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence            999999985 6656555544332                58999999999999999999999999998888999999999


Q ss_pred             CccceeeecCC
Q 014644          349 ENRKPILQAAP  359 (421)
Q Consensus       349 ~~~~~~~~~~~  359 (421)
                      .|.+++|.+..
T Consensus       295 sVt~vafq~s~  305 (673)
T KOG4378|consen  295 SVTRVAFQPSP  305 (673)
T ss_pred             ceeEEEeeecc
Confidence            99999999873

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=4.4e-20  Score=155.70  Aligned_cols=234  Identities=15%  Similarity=0.210  Sum_probs=169.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      -||+.+|..++|+| .+...+|+||.|.+|+||++..+.+..-..                                   
T Consensus        78 ~GHt~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~lt-----------------------------------  121 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLT-----------------------------------  121 (472)
T ss_pred             cCccccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcc-----------------------------------
Confidence            48999999999986 467899999999999999998765221111                                   


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        +++..+ .+|...|--++|+|. .+.|+++ .|.+|.+||+.++...+.+        . |.
T Consensus       122 ------------------epvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--------~-hp  173 (472)
T KOG0303|consen  122 ------------------EPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--------D-HP  173 (472)
T ss_pred             ------------------cceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--------C-CC
Confidence                              555666 899999999999996 4566676 9999999999965555532        3 99


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--  265 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--  265 (421)
                      +.|+++.|+.+| .+|++++.|+.|||||.+.+....+.    ..|          .  ......+.|-.+|..+.+|  
T Consensus       174 d~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~h----------e--G~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  174 DMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VAH----------E--GAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             CeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----ccc----------c--CCCcceeEEeccCceeeeccc
Confidence            999999999999 99999999999999999998765221    222          0  1234566687888865565  


Q ss_pred             --cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCCceeE
Q 014644          266 --DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       266 --~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                        ++.++-+||...-.+++.......+.              +|.=--|.||...++ +|-.|+.||.|.+.....-...
T Consensus       237 r~seRq~aLwdp~nl~eP~~~~elDtSn--------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy  302 (472)
T KOG0303|consen  237 RMSERQIALWDPNNLEEPIALQELDTSN--------------GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY  302 (472)
T ss_pred             cccccceeccCcccccCcceeEEeccCC--------------ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence              33889999987655554444333332              112345678877765 5557999999999887544444


Q ss_pred             Eec--CCCCccceeeecC
Q 014644          343 VEA--GKNENRKPILQAA  358 (421)
Q Consensus       343 ~~~--~~~~~~~~~~~~~  358 (421)
                      +..  ...+-+.+.+.|.
T Consensus       303 ln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  303 LNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecccccCCcccccccccc
Confidence            443  2344556666655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=1.8e-18  Score=154.24  Aligned_cols=268  Identities=11%  Similarity=0.100  Sum_probs=168.1

Q ss_pred             ccccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           28 KSLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ..+.+...+.++.|  ++++..+ ++++.++.|++||..+++......  ....+.            ...++++...+.
T Consensus        25 ~~~~~~~~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~------------~~~~~~~g~~l~   88 (300)
T TIGR03866        25 RTFPVGQRPRGITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SGPDPE------------LFALHPNGKILY   88 (300)
T ss_pred             EEEECCCCCCceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CCCCcc------------EEEECCCCCEEE
Confidence            33444445778999  7888866 567789999999998876432211  111111            223334443332


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCC-cEEEEeCCCCceeeeeeecCCCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~-~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                      .... .+..+.+|++.+.   +.+..+ . +...+.+++|+|++++++++ .++ .+.+||.+ ........       .
T Consensus        89 ~~~~-~~~~l~~~d~~~~---~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~-------~  154 (300)
T TIGR03866        89 IANE-DDNLVTVIDIETR---KVLAEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV-------L  154 (300)
T ss_pred             EEcC-CCCeEEEEECCCC---eEEeEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE-------E
Confidence            2211 1347899998875   555555 2 23346889999999999988 554 57788987 34443322       1


Q ss_pred             ccCCCeeEEEEecCCCCeEE-EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                       ....+.+++|+|++ +.|+ ++..++.|++||+.+++..    ..+..+.  +..    .........++|+|++++++
T Consensus       155 -~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~--~~~----~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       155 -VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEI--PGV----HPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             -cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecc--ccc----ccccCCccceEECCCCCEEE
Confidence             12345778999999 7665 4456999999999987543    2111100  000    00011345688999999865


Q ss_pred             Ee-c-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCce
Q 014644          264 SR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       264 ~~-~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~  340 (421)
                      .+ . ++.+.+||+++ ++.+..+.... .+               .+++|+|+|++|+++ ..+|.|++||++++ ...
T Consensus       223 ~~~~~~~~i~v~d~~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~  284 (300)
T TIGR03866       223 VALGPANRVAVVDAKT-YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVI  284 (300)
T ss_pred             EEcCCCCeEEEEECCC-CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEE
Confidence            54 3 37899999985 66655443222 22               689999999999876 46899999999987 555


Q ss_pred             eEEecCCCCccceeee
Q 014644          341 ITVEAGKNENRKPILQ  356 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~  356 (421)
                      ..++....+ ..++++
T Consensus       285 ~~~~~~~~~-~~~~~~  299 (300)
T TIGR03866       285 KSIKVGRLP-WGVVVR  299 (300)
T ss_pred             EEEEccccc-ceeEeC
Confidence            555544333 555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.3e-19  Score=166.55  Aligned_cols=236  Identities=17%  Similarity=0.154  Sum_probs=183.5

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..|....+.++|.|+|++|.++ .||.|++|+.......-.++       ..+...|.+++...   ..|++++.+++|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-------~~~g~~v~~ia~~s---~~f~~~s~~~tv~   79 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-------DISGELVSSIACYS---NHFLTGSEQNTVL   79 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-------hccCceeEEEeecc---cceEEeeccceEE
Confidence            4799999999999999999999 99999999987442333332       33667778776553   5799999999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +|.+..+...    .++..             ..-+++.++++-+|+++|.|++ -.|++-++.. ......+++|..++
T Consensus        80 ~y~fps~~~~----~iL~R-------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apV  141 (933)
T KOG1274|consen   80 RYKFPSGEED----TILAR-------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPV  141 (933)
T ss_pred             EeeCCCCCcc----ceeee-------------eeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCce
Confidence            9999887632    12221             1458999999999999999987 8899999975 77788899999876


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--------CCCccceeeecCCccccc
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--------KNENRKPILQAAPRARRS  364 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  364 (421)
                                     .++.|+|++.+||+.+-||.|++||++++ .+..++.+-        ...+..++|+|.      
T Consensus       142 ---------------l~l~~~p~~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------  199 (933)
T KOG1274|consen  142 ---------------LQLSYDPKGNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPK------  199 (933)
T ss_pred             ---------------eeeeEcCCCCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCC------
Confidence                           89999999999999999999999999986 433333321        345677889988      


Q ss_pred             ccceeeeecccCc-ccC--CCCCcccccc--ccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          365 SLSNLTRGLYRQA-HEN--SSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       365 ~~~~l~~g~~d~~-~iw--~~~~~~~~~~--~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                       +..|+....|+. +++  ...+.+..+.  .+...+.+++|+|.|.+||+++ ++.|.|||.
T Consensus       200 -~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  200 -GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             -CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence             336777777777 888  3334444443  2344499999999999999999 777999984

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=9e-20  Score=156.07  Aligned_cols=234  Identities=15%  Similarity=0.132  Sum_probs=174.0

Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC-------------CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMK-------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      .|+++|.| .|..|.|||+.........+.+.             .....+|+..|.+++|+..-.+.|++||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            37899999 99999999987433322222111             12235799999999999887789999999999999


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      ||+.+++..    .++..             |...|.++.|+|. ..+|++|+. +++.+.|.|..+..-..++..... 
T Consensus       271 WD~~~g~p~----~s~~~-------------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V-  332 (463)
T KOG0270|consen  271 WDVDTGKPK----SSITH-------------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV-  332 (463)
T ss_pred             EEcCCCCcc----eehhh-------------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce-
Confidence            999998754    44444             3789999999995 668888986 999999998534444444433332 


Q ss_pred             cccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                                     -.++|.|.. ..++++..||+++-+|++..+....++++|.++|..+.+....++      +|++
T Consensus       333 ---------------Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~------~l~t  391 (463)
T KOG0270|consen  333 ---------------EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG------LLST  391 (463)
T ss_pred             ---------------EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc------ceee
Confidence                           578999964 456788899999999999988899999999999999999887554      5899


Q ss_pred             ecccCc-ccCCCCCc---ccccccc-ccCeEEEEEccCCCe-EEEecC-CceEEEeC
Q 014644          372 GLYRQA-HENSSSGH---HELSYNL-SSKLLHLAWHPTTNL-IACANG-NSLFFHYA  421 (421)
Q Consensus       372 g~~d~~-~iw~~~~~---~~~~~~~-~~~v~~~~~spd~~~-la~~~~-~~~~i~~~  421 (421)
                      ++.++. ++|+....   ......+ -+...++++.|+-.. ||.|+. ..+++|+.
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            999999 99933221   1111122 123567788888655 666664 45999973

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.5e-19  Score=146.64  Aligned_cols=260  Identities=16%  Similarity=0.240  Sum_probs=183.8

Q ss_pred             cccccccccEEEEEEEEcCCC---CeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCC
Q 014644           27 LKSLEIEEKINRVRWCAAPNG---SMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  101 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~---~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  101 (421)
                      ..++.|.-+++.+.|.|++.|   .+|||++.  .+|||.+...+  ........                         
T Consensus        90 ~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~-------------------------  142 (364)
T KOG0290|consen   90 DANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLN-------------------------  142 (364)
T ss_pred             cCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhc-------------------------
Confidence            334688899999999766543   34555543  79999988533  11110000                         


Q ss_pred             ceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCC-ceeeeeeec
Q 014644          102 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEIS-DQCFNIVDM  178 (421)
Q Consensus       102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~  178 (421)
                                                .+  . ...+..++++..|+. +-++|.++ -|-+..|||++++ ...+++   
T Consensus       143 --------------------------~~--k-ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT---  190 (364)
T KOG0290|consen  143 --------------------------NN--K-NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT---  190 (364)
T ss_pred             --------------------------cC--c-ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee---
Confidence                                      00  0 146778899999987 66777787 8999999999943 111222   


Q ss_pred             CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       179 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                         .+-.|...|..++|...+...+++.+.||.||+||+|...-   ..-+++.    +.       ...+...++|++.
T Consensus       191 ---QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~----p~-------~~~pLlRLswnkq  253 (364)
T KOG0290|consen  191 ---QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYED----PS-------PSTPLLRLSWNKQ  253 (364)
T ss_pred             ---EEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecC----CC-------CCCcceeeccCcC
Confidence               34679999999999998878999999999999999998431   1112222    11       1357788999985


Q ss_pred             -CCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecC
Q 014644          259 -GQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       259 -~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~  334 (421)
                       -+++|+- .+ ..|.|.|++.+..++.++++|+..+               ..++|.|. ...|+++++|..+-|||+.
T Consensus       254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccc---------------cceEecCCCCceeeecCCcceEEEEecc
Confidence             4566653 44 8899999999899999999999976               89999995 6789999999999999998


Q ss_pred             CCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccC-CCeEEEecC
Q 014644          335 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANG  413 (421)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd-~~~la~~~~  413 (421)
                      .-..     ....++  -+++.                                   -...|..+.|+|. +.+|+++..
T Consensus       319 q~~~-----~~~~dP--ilay~-----------------------------------a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  319 QMPR-----ENGEDP--ILAYT-----------------------------------AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             cccc-----cCCCCc--hhhhh-----------------------------------ccceeeeeeecccCCCEEEEEec
Confidence            6511     000011  11111                                   1467999999965 678999998


Q ss_pred             CceEEE
Q 014644          414 NSLFFH  419 (421)
Q Consensus       414 ~~~~i~  419 (421)
                      +.+.|.
T Consensus       357 kkleiL  362 (364)
T KOG0290|consen  357 KKLEIL  362 (364)
T ss_pred             CeeeEE
Confidence            887664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=152.40  Aligned_cols=300  Identities=14%  Similarity=0.057  Sum_probs=205.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce----eEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      ++|.+-|+++.|  +.++++|++|+.|..++||.++..-    .+++....++-          ...|+|+.++...+++
T Consensus        53 ~~H~GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H----------~SNIF~L~F~~~N~~~  120 (609)
T KOG4227|consen   53 REHTGCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPH----------RSNIFSLEFDLENRFL  120 (609)
T ss_pred             hhhccccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCcc----------ccceEEEEEccCCeeE
Confidence            589999999999  5679999999999999999986532    23333322221          2356666666666777


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCC---cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  181 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~  181 (421)
                      .+|..  .+++.+-|+++.   +.+.++  .|.   +.|..+..+|..+.|++. .++.|.+||.+........+     
T Consensus       121 ~SG~~--~~~VI~HDiEt~---qsi~V~--~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----  188 (609)
T KOG4227|consen  121 YSGER--WGTVIKHDIETK---QSIYVA--NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----  188 (609)
T ss_pred             ecCCC--cceeEeeecccc---eeeeee--cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----
Confidence            76655  456777788776   556555  444   489999999988888887 99999999998433233222     


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      -+........++.|+|..+.+|++++..+-+-+||.+..+..   +.....       ..-+......-.++.|+|+|..
T Consensus       189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q  258 (609)
T KOG4227|consen  189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSM-------FKGLPQENTEWMGSLWSPSGNQ  258 (609)
T ss_pred             eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhc-------cccCcccchhhhheeeCCCCCe
Confidence            113345667889999999899999999999999999976422   111111       0001111233467889999998


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC----
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----  336 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~----  336 (421)
                      +++-.. ..-.+||+.+...++..+. |...      .|.|.+  .+-+++|.-|- .+++|+.+=.|++|.+...    
T Consensus       259 ~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~------GY~N~~--T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~  328 (609)
T KOG4227|consen  259 FMSIRRGKCPLYFDFISQRCFVLKSD-HNPN------GYCNIK--TIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSY  328 (609)
T ss_pred             ehhhhccCCCEEeeeecccceeEecc-CCCC------cceeee--eeeeeeeecce-eeeccCcccceEEEecCCCcccc
Confidence            887644 4456788875333343333 2211      111111  12578887554 4899999999999998642    


Q ss_pred             ------------------CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          337 ------------------SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       337 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                                        .....+|.+|.+-++.+.|++.       ..+|++.+-... +||
T Consensus       329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H-------~~~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH-------NNLLVSSGVENSFKLW  384 (609)
T ss_pred             CccccCcchhhCchhheecceeEEEecccccccceeecCC-------cceEeccchhhheecc
Confidence                              1235678999999999999998       458888888888 999

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=156.07  Aligned_cols=237  Identities=13%  Similarity=0.134  Sum_probs=175.2

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .+.|+++.|+|..+.|+++ .|++++||.++ +..-..+     ..+.-...+|.+.+|.|+|...+++++....++.||
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~l-----qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKL-----QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEec-CccChhh-----eeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            4679999999999999998 99999999998 3211111     122334578999999999943899999999999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      +.+.+...  ++...++            ....+.....+|++++|+..+. |.|.+....+ ++.+..++.....    
T Consensus       287 le~ak~~k--~~~~~g~------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~KieG~v----  347 (514)
T KOG2055|consen  287 LETAKVTK--LKPPYGV------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFKIEGVV----  347 (514)
T ss_pred             cccccccc--ccCCCCc------------ccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheeeeccEE----
Confidence            98876431  1222221            0346778899999999998776 9999999987 8888888765533    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeeccc
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  375 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d  375 (421)
                                  .+++|+.+++.|++.+.+|.|++||++.. .....+. ..+.+....++++..+.     +||+|++.
T Consensus       348 ------------~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~-D~G~v~gts~~~S~ng~-----ylA~GS~~  408 (514)
T KOG2055|consen  348 ------------SDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFV-DDGSVHGTSLCISLNGS-----YLATGSDS  408 (514)
T ss_pred             ------------eeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEe-ecCccceeeeeecCCCc-----eEEeccCc
Confidence                        68999999999999999999999999976 3333332 23344444444443344     99999999


Q ss_pred             Cc-ccCCCC--------CccccccccccCeEEEEEccCCCeEEEec---CCceEE
Q 014644          376 QA-HENSSS--------GHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFF  418 (421)
Q Consensus       376 ~~-~iw~~~--------~~~~~~~~~~~~v~~~~~spd~~~la~~~---~~~~~i  418 (421)
                      |. .|++..        .++...-.....|++++|+||.++||.++   .+.+++
T Consensus       409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence            99 999422        23344445678999999999999999988   344543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=4.9e-20  Score=154.50  Aligned_cols=226  Identities=15%  Similarity=0.232  Sum_probs=154.3

Q ss_pred             ceeeeccccccCCCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccc
Q 014644           10 EYRYKTEFQSHEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL   88 (421)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~   88 (421)
                      ++.--.+...+..++..+.++ +|...=.+++|+|.. ...|++|..-+.|++|...++.-+                  
T Consensus       187 ~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~-~g~LlsGDc~~~I~lw~~~~g~W~------------------  247 (440)
T KOG0302|consen  187 NALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK-TGRLLSGDCVKGIHLWEPSTGSWK------------------  247 (440)
T ss_pred             hhhcCccccccccccCceEEecccCccceeeeccccc-ccccccCccccceEeeeeccCcee------------------
Confidence            333334444555566655554 688888999996532 445789988899999998876511                  


Q ss_pred             cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeC
Q 014644           89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNL  166 (421)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~  166 (421)
                                                      ++.       +-+ .+|+..|..|+|||.. ..|++| .|++|+|||+
T Consensus       248 --------------------------------vd~-------~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  248 --------------------------------VDQ-------RPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             --------------------------------ecC-------ccc-cccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence                                            111       123 6799999999999964 466677 9999999999


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      +...+.-.+.      .+.|.+.|..+.|+... .+|++|+.||+++|||+|+-+.. +.+..             |+-|
T Consensus       288 Rs~~~~~~~~------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~pVA~-------------fk~H  346 (440)
T KOG0302|consen  288 RSGPKKAAVS------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-QPVAT-------------FKYH  346 (440)
T ss_pred             cCCCccceeE------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-Cccee-------------EEec
Confidence            9443322222      26799999999999998 69999999999999999985432 22233             4456


Q ss_pred             ccceeEEEEcCCCC-EE-EEecCCeEEEEECCCCCc---------------ceeEEeeccCcccccccccCCCcceeeeE
Q 014644          247 IASISDIKFANDGQ-HL-LSRDYMNLKLWDIRMDST---------------PVATFKIHEHLRPKLCDLYNNDSIFDKFE  309 (421)
Q Consensus       247 ~~~v~~~~~s~~~~-~l-~~~~~~~i~i~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      ..+|+++.|+|... .| ++|.|.+|.|||+..+..               +-+.+-.|.+.          .   .+-.
T Consensus       347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ----------k---e~Ke  413 (440)
T KOG0302|consen  347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ----------K---EVKE  413 (440)
T ss_pred             cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch----------h---Hhhh
Confidence            99999999999543 33 345569999999964221               01112222211          1   1247


Q ss_pred             EEEcCC-CCEEEEeeCCCeE
Q 014644          310 CSVSGD-GLHFATGSYSNLL  328 (421)
Q Consensus       310 ~~~sp~-~~~l~~~s~dg~i  328 (421)
                      +.|+++ ..+|++.+.||.-
T Consensus       414 vhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  414 VHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             heeccCCCCeEEEeccccee
Confidence            899986 4577787777743

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=2.1e-19  Score=161.26  Aligned_cols=268  Identities=13%  Similarity=0.138  Sum_probs=194.8

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .|+.++|  .|||..|+.+..| .+.+||..+|.                                              
T Consensus        14 ci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~----------------------------------------------   44 (1081)
T KOG1538|consen   14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSDGT----------------------------------------------   44 (1081)
T ss_pred             chheeEE--CCCCceEEEecCC-EEEEEeCCCcc----------------------------------------------
Confidence            6899999  7999888877754 78999988864                                              


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  193 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  193 (421)
                                    .++++ ++|.+.|++++|+.||+.+++| .|..|.+|+.. -+..++         ..|.+.|.|+
T Consensus        45 --------------llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk---------YSH~D~IQCM   99 (1081)
T KOG1538|consen   45 --------------LLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK---------YSHNDAIQCM   99 (1081)
T ss_pred             --------------ccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee---------eccCCeeeEe
Confidence                          22344 8999999999999999999999 99999999987 344443         5799999999


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEE
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  272 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i  272 (421)
                      .|+|-. +.|++++... .-+|........     ....              ...+.+++|..||++++.|-. |+|.|
T Consensus       100 sFNP~~-h~LasCsLsd-FglWS~~qK~V~-----K~ks--------------s~R~~~CsWtnDGqylalG~~nGTIsi  158 (1081)
T KOG1538|consen  100 SFNPIT-HQLASCSLSD-FGLWSPEQKSVS-----KHKS--------------SSRIICCSWTNDGQYLALGMFNGTISI  158 (1081)
T ss_pred             ecCchH-HHhhhcchhh-ccccChhhhhHH-----hhhh--------------heeEEEeeecCCCcEEEEeccCceEEe
Confidence            999998 8899887553 568887664422     1111              357899999999999999965 99999


Q ss_pred             EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-----CEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      -+-.  +++.-.+..+.+.         |..|   ++++|+|..     ..+++.....++.++.+...  .+..-..-.
T Consensus       159 RNk~--gEek~~I~Rpgg~---------Nspi---wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~  222 (1081)
T KOG1538|consen  159 RNKN--GEEKVKIERPGGS---------NSPI---WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALN  222 (1081)
T ss_pred             ecCC--CCcceEEeCCCCC---------CCCc---eEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCC
Confidence            8753  5554445443332         1222   799999963     46777777888888877632  111001111


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      -.--++.+.++       +.++..|+.|+. ++++ .+-.+.+...+..+|+.++.+|+++.++.|+ ++.|--||
T Consensus       223 FdP~CisYf~N-------GEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  223 FDPCCISYFTN-------GEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CCchhheeccC-------CcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            11124455555       448999999999 9994 4445666667889999999999999999999 45455443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.1e-19  Score=155.94  Aligned_cols=285  Identities=13%  Similarity=0.117  Sum_probs=195.2

Q ss_pred             CCCcEEEeecCCceeEE-eeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccccee-eeeee
Q 014644           55 NDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-RCQKV  132 (421)
Q Consensus        55 ~d~~v~lwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  132 (421)
                      .-.+++|||+...+... .........+.++.|.            ... ++...+...+..+++|.-...... ..++.
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~------------~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ------------RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeecc------------ccc-eEEEeecCCceeEEEecccCCCCccceeec
Confidence            33479999988765322 1111112223333333            222 244444455567888865543211 22222


Q ss_pred             ecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          133 YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       133 ~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      . .+.  .-.|++......++++| ..++|+|||++ ...+.+.       +.+|+..|+++.++-.. .+||+++..|.
T Consensus        77 ~-~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~-------lkdh~stvt~v~YN~~D-eyiAsvs~gGd  144 (673)
T KOG4378|consen   77 L-TGD--NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRF-------LKDHQSTVTYVDYNNTD-EYIASVSDGGD  144 (673)
T ss_pred             c-ccc--hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhh-------ccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence            2 232  44566666666899998 99999999998 4555543       48999999999999988 89999999999


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC-CeEEEEECCCCCcce-eEEeec
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWDIRMDSTPV-ATFKIH  288 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~-~~i~i~d~~~~~~~~-~~~~~~  288 (421)
                      |.|..+.++...    ..+..            .....|.-+.|+|..+++++ +++ |.|.+||+.. ..+. .-...|
T Consensus       145 iiih~~~t~~~t----t~f~~------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~~H  207 (673)
T KOG4378|consen  145 IIIHGTKTKQKT----TTFTI------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASEAH  207 (673)
T ss_pred             EEEEecccCccc----cceec------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchhhhc
Confidence            999999886532    22221            01345678999999887764 566 9999999975 4443 334556


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccc
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                      ..+.               ..+||+|. ..+|++.+.|..|++||+... .....+ ....|...++|.+.       +.
T Consensus       208 sAP~---------------~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l-~y~~Plstvaf~~~-------G~  263 (673)
T KOG4378|consen  208 SAPC---------------RGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRL-TYSHPLSTVAFSEC-------GT  263 (673)
T ss_pred             cCCc---------------CcceecCCccceEEEecccceEEEeecccc-ccccee-eecCCcceeeecCC-------ce
Confidence            6654               68999995 567889999999999999854 222222 34567889999988       44


Q ss_pred             eeeeecccCc-ccC---CCCCccccccccccCeEEEEEccCC
Q 014644          368 NLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTT  405 (421)
Q Consensus       368 ~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~  405 (421)
                      +|+.|...|. ..+   ....++.....|...|++++|-|..
T Consensus       264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999998 555   3445677778899999999998875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.5e-19  Score=148.26  Aligned_cols=233  Identities=10%  Similarity=0.052  Sum_probs=163.1

Q ss_pred             eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644          141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                      ..|+.|++.|.+||.| .||.|.|||+. +...-++       +.+|..+|.+++|+++| +.|+++|.|..|.+||+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~-------lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARM-------LSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhh-------hhccccceeEEEecCCC-CEeeeecCCceeEEEeccC
Confidence            7899999999999999 99999999998 3444443       48899999999999999 9999999999999999999


Q ss_pred             ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE--EEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644          220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL--LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      +...    +.+.-              .++|..+.|+|..+..  ++--+..-.+-++..   +.+.+-...... .   
T Consensus        97 gs~l----~rirf--------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~-d---  151 (405)
T KOG1273|consen   97 GSPL----KRIRF--------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDG-D---  151 (405)
T ss_pred             CCce----eEEEc--------------cCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCcc-c---
Confidence            8754    44444              5799999999964433  332223344444432   122221111100 0   


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC-CCccceeeecCCcccccccceeeeecccC
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQ  376 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d~  376 (421)
                        .+..   ..+..|.+.|++|++|...|.+.++|..+. .....++.-. ..++.+.++..  |+     .|+....|+
T Consensus       152 --ln~s---as~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~--g~-----~liiNtsDR  218 (405)
T KOG1273|consen  152 --LNSS---ASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRK--GR-----FLIINTSDR  218 (405)
T ss_pred             --cccc---cccccccCCCCEEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEecc--Cc-----EEEEecCCc
Confidence              0000   023458899999999999999999999987 5555555444 77888888866  44     899999999


Q ss_pred             c-ccCCCCCcccc--------cccccc-----CeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          377 A-HENSSSGHHEL--------SYNLSS-----KLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       377 ~-~iw~~~~~~~~--------~~~~~~-----~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      . +.+...+....        ......     .=.+++|+.||.++++++  ...||||.
T Consensus       219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            8 88832211111        011111     224689999999999888  56799995

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=6.3e-19  Score=145.15  Aligned_cols=242  Identities=14%  Similarity=0.167  Sum_probs=182.1

Q ss_pred             CcceEEEeec-------CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC---CeeEEEEecCCCCeEEEE
Q 014644          138 DFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       138 ~~~v~~l~~~-------~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~s~  206 (421)
                      ...|...+|-       |+..+++++ .+.-|++||.- .+++...+     ....|.+   ...+++|+||| ..|++ 
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf-tG~lraSy-----~~ydh~de~taAhsL~Fs~DG-eqlfa-  175 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF-TGKLRASY-----RAYDHQDEYTAAHSLQFSPDG-EQLFA-  175 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeecc-ccccccch-----hhhhhHHhhhhheeEEecCCC-CeEee-
Confidence            3457777774       567788887 99999999998 45544332     2233443   34589999999 77765 


Q ss_pred             EcCCeEEEEEC-CcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCccee
Q 014644          207 SSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       207 ~~d~~v~iwd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~  283 (421)
                      +....|+++|+ |.|+.+........+          -.+..+-+.+++|+|.. +.++.++. ..+-||.-.. ..++.
T Consensus       176 GykrcirvFdt~RpGr~c~vy~t~~~~----------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~  244 (406)
T KOG2919|consen  176 GYKRCIRVFDTSRPGRDCPVYTTVTKG----------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQ  244 (406)
T ss_pred             cccceEEEeeccCCCCCCcchhhhhcc----------cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCcee
Confidence            56778999999 666544322111111          01225678999999954 47888887 7777887765 88888


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCceeEEecCCC-CccceeeecCCcc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRA  361 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  361 (421)
                      .+.+|.+.+               +.++|.++|+.|.+|+. |-.|-.||++.....+..|..|.+ ....+.|..+..+
T Consensus       245 llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~  309 (406)
T KOG2919|consen  245 LLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG  309 (406)
T ss_pred             eecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC
Confidence            888998865               89999999999999986 778999999998788889999988 5666777766555


Q ss_pred             cccccceeeeecccCc-ccCCC---CCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644          362 RRSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  418 (421)
Q Consensus       362 ~~~~~~~l~~g~~d~~-~iw~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i  418 (421)
                      +     .|++|+.||. ++|+.   ++.......++..|+.++++|--+++|+++...++-
T Consensus       310 ~-----~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~  365 (406)
T KOG2919|consen  310 E-----ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFK  365 (406)
T ss_pred             c-----eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeec
Confidence            5     8999999999 99933   444555667788999999999999999998776653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.4e-20  Score=175.29  Aligned_cols=245  Identities=12%  Similarity=0.084  Sum_probs=183.8

Q ss_pred             CCcceEEEeecCCCCE----EEEE-cCCcEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          137 HDFNINSISNNSDCET----FVSA-DDLRINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~----l~s~-~d~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      -..+.+.|+|.+.+..    |+.| .||.|.+||...-  ......+    .+...|.+.|..+.|++..+++|++|+.|
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~  138 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADD  138 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCC
Confidence            3457889999887665    7778 9999999998741  2222222    24478999999999999986799999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEee
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      |.|.|||+.+.+...    ....           ....+.|.+++|+..-. .|++++. |.+.|||++. .+++-.+..
T Consensus       139 geI~iWDlnn~~tP~----~~~~-----------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~  202 (1049)
T KOG0307|consen  139 GEILIWDLNKPETPF----TPGS-----------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSD  202 (1049)
T ss_pred             CcEEEeccCCcCCCC----CCCC-----------CCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCccccccc
Confidence            999999998744221    1100           11146899999998644 5566766 8999999997 666655554


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      +....             .+..++|+|+. ..|+++++|.   .|.+||++......+++++|...+-++.|++..    
T Consensus       203 ~~~~~-------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D----  265 (1049)
T KOG0307|consen  203 TPGRM-------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD----  265 (1049)
T ss_pred             CCCcc-------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC----
Confidence            44321             12589999974 4466666543   699999998877889999999999999999873    


Q ss_pred             cccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCC-eEEEec-CCceEEEe
Q 014644          364 SSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY  420 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-~~~~~i~~  420 (421)
                        ..+|++.+.|+. ..|  ..+|.+...-....++..+.|+|..+ .+++++ ++.|-||+
T Consensus       266 --~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  266 --PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             --chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence              237889999999 999  45566666655678899999999998 666666 77788885

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=9.3e-19  Score=153.33  Aligned_cols=205  Identities=14%  Similarity=0.171  Sum_probs=157.3

Q ss_pred             EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhh
Q 014644          152 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  230 (421)
Q Consensus       152 ~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  230 (421)
                      .++.+ .||.+.+.+-.  ++.-+.       ...|.+.+.+-.|+|+| .-|++++.||.|++|.-. |-+.    .++
T Consensus        77 ~~~i~s~DGkf~il~k~--~rVE~s-------v~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLR----Stl  141 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKS--ARVERS-------ISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLR----STV  141 (737)
T ss_pred             eEEEEcCCceEEEeccc--chhhhh-------hhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHH----HHH
Confidence            34444 88888887654  332222       37899999999999999 999999999999999843 3221    111


Q ss_pred             ccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644          231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  310 (421)
Q Consensus       231 ~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      .             ....+|.+++|.|+...++.+..+.+.|=.+.. ...+-.++.|.+.+               .++
T Consensus       142 ~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~~  192 (737)
T KOG1524|consen  142 V-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LSL  192 (737)
T ss_pred             h-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EEe
Confidence            1             114689999999999888877667888888875 66667799999876               899


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcccccc
Q 014644          311 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSY  390 (421)
Q Consensus       311 ~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~  390 (421)
                      .|+|.+..+++|++|-..+|||-.  +.....-..|..++++++|.|+.        .++.|+.+..++         ..
T Consensus       193 ~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd~--------~~~v~S~nt~R~---------~~  253 (737)
T KOG1524|consen  193 SWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPEK--------DYLLWSYNTARF---------SS  253 (737)
T ss_pred             ecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeecccc--------ceeeeeeeeeee---------cC
Confidence            999999999999999999999966  46677778999999999999982        345555433221         12


Q ss_pred             ccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          391 NLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       391 ~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                      .-.++|..++|||||..+++|...+..++
T Consensus       254 p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  254 PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             CCccceEEEEEcCCCceeeccccCceEEE
Confidence            23578999999999999999997776554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=8.9e-19  Score=145.30  Aligned_cols=286  Identities=14%  Similarity=0.165  Sum_probs=183.6

Q ss_pred             CeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644           48 SMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  126 (421)
Q Consensus        48 ~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  126 (421)
                      +.+|++-+.|+|++||..+++ ++.+..  ++..+..++|...       + ++..  +..+  .+++.+++||+....+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~--~~~~~N~vrf~~~-------d-s~h~--v~s~--ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG--PPATTNGVRFISC-------D-SPHG--VISC--SSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC--CCCcccceEEecC-------C-CCCe--eEEe--ccCCeEEEEEeecchh
Confidence            679999999999999999876 333333  2222222222211       0 1111  1111  2367899999987632


Q ss_pred             eeeeeeecCCCC-cceEEEeecCCCCEEEEE-----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC
Q 014644          127 ARCQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  200 (421)
Q Consensus       127 ~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  200 (421)
                       ..+..+ .+|. .+..+++.+..++.+++|     .+-.|.+||++...+.++.+      ...|.+.|++++|+|..+
T Consensus       107 -~a~~~~-~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~~p  178 (376)
T KOG1188|consen  107 -SARISW-TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPSDP  178 (376)
T ss_pred             -hhheec-cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCCCC
Confidence             233334 4555 567888888788899886     36789999999666656544      278999999999999999


Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEec-CCeEEEEECCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMD  278 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~i~d~~~~  278 (421)
                      ++|++||.||.|.+||+......+....++..              ...|..+.|..++ +.|.+-+ .++..+|+++. 
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-  243 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-  243 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-
Confidence            99999999999999999886555545555554              6779999999887 2344444 49999999985 


Q ss_pred             CcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEE-EeeCCCeEEEEecCC---C--CCceeEEec-CCCCc
Q 014644          279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFA-TGSYSNLLRIFSHGV---G--SAGGITVEA-GKNEN  350 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~-~~s~dg~i~iwd~~~---~--~~~~~~~~~-~~~~~  350 (421)
                      +.+...+..+.-.........+.+.+   .. +.+| +....+ .|+.-|...++-+..   +  ......+++ |..-|
T Consensus       244 ~~~~~~~~~~~~~~~d~r~~~~~dY~---I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV  319 (376)
T KOG1188|consen  244 GSEETWLENPDVSADDLRKEDNCDYV---IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV  319 (376)
T ss_pred             CChhhcccCccchhhhHHhhhhhhhe---ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH
Confidence            55444443321111111111111111   11 2234 333444 344356666655442   2  233556666 67778


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      +.+.|...       ..++.+|+.||. .+|.
T Consensus       320 R~i~~~~~-------~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  320 RDILFDVK-------NDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             HHHhhhcc-------cceeeccCCCceEEEEe
Confidence            88888755       458999999999 9995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5e-18  Score=152.72  Aligned_cols=234  Identities=14%  Similarity=0.050  Sum_probs=173.7

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc-CCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      .--..+|.++|++.+.+.||.+ .+|.|.+|++..+--+...+       .++ ...|.+++|++.  ..|.+.+.+|.|
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi-------~g~~drsIE~L~W~e~--~RLFS~g~sg~i   92 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI-------HGPEDRSIESLAWAEG--GRLFSSGLSGSI   92 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE-------ecCCCCceeeEEEccC--CeEEeecCCceE
Confidence            3446789999999999999999 99999999999443333333       333 467999999965  578899999999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE--Eeecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT--FKIHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~--~~~~~  289 (421)
                      .-||+-+....    ..++.             ..+.|.+++.+|.+..++.|++ |.+..++... +.....  +....
T Consensus        93 ~EwDl~~lk~~----~~~d~-------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~  154 (691)
T KOG2048|consen   93 TEWDLHTLKQK----YNIDS-------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGP-DKITYKRSLMRQK  154 (691)
T ss_pred             EEEecccCcee----EEecC-------------CCcceeEEEeCCccceEEeecCCceEEEEecCC-ceEEEEeeccccc
Confidence            99999987643    22222             2568999999999999999976 9888888764 433222  22222


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec--------CCCCccceeeecCCcc
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA--------GKNENRKPILQAAPRA  361 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  361 (421)
                      +.               +.+++|+|++..|++|+.||.|++||+..+.... ....        ..--|+++.+-.+   
T Consensus       155 sR---------------vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd---  215 (691)
T KOG2048|consen  155 SR---------------VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRD---  215 (691)
T ss_pred             ce---------------EEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEeec---
Confidence            22               2799999999999999999999999999874332 1111        2223455555433   


Q ss_pred             cccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEE
Q 014644          362 RRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  419 (421)
Q Consensus       362 ~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~  419 (421)
                           +.|++|...|. ++|+  .+-++.....|...|.+++..++++++.+++ +..+.-|
T Consensus       216 -----~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  216 -----STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             -----CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence                 37999999999 9993  3445556667899999999999999988888 5556655

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=9.2e-19  Score=155.24  Aligned_cols=258  Identities=16%  Similarity=0.182  Sum_probs=185.2

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      .|...+ .+|++.|++|...|.|.+|++| +||+|+||.+. ++.+++.+.        ..+.|.|++|+|.+..-++++
T Consensus       391 ~~~lvy-rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~~--------~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  391 RCALVY-RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTVQ--------FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             eeeeeE-eccCCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEEe--------ecceeEEEEecCCCCceeEEE
Confidence            455566 8999999999999999999999 99999999999 788887762        335799999999875555555


Q ss_pred             EcCCeEEEEECCccccccc--chh----------------hhcccc--ccCCCcccccccccceeEEEEcCCCCEEEEe-
Q 014644          207 SSRGFVRLVDMRQSALCDH--SAR----------------ILRDAA--ESHGSKSFFTEIIASISDIKFANDGQHLLSR-  265 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~--~~~----------------~~~~h~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-  265 (421)
                      +....+.|-+..-|.....  ...                .|....  +........-.|...|..+.|+..|.||++. 
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            5555566666544421100  000                111100  0000011234567789999999999999974 


Q ss_pred             -cC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          266 -DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       266 -~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                       +.  ..|.|+++.. ......|....+.+               .++.|+|...+|++++. ..|+|||+... .+...
T Consensus       541 ~~~~~~~VliHQLSK-~~sQ~PF~kskG~v---------------q~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKk  602 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSK-RKSQSPFRKSKGLV---------------QRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKK  602 (733)
T ss_pred             cCCCcceEEEEeccc-ccccCchhhcCCce---------------eEEEecCCCceEEEEec-cceEEEehhHH-HHHHH
Confidence             22  7899999975 33333343333322               68999999888888875 78999999874 66667


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCcccC---C-CCCccccccccccCeEEEEEccCCCeEEEecC-CceE
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN---S-SSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLF  417 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw---~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~  417 (421)
                      +......+..++.+|.       +..|+.|+.|+.-+|   + ....-..+.-|...|++++||+.-+++|+|++ +.+.
T Consensus       603 L~tg~kwiS~msihp~-------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  603 LLTGSKWISSMSIHPN-------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             HhcCCeeeeeeeecCC-------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            7777778888999887       448999999999888   2 22344556678999999999999999999996 4577


Q ss_pred             EEe
Q 014644          418 FHY  420 (421)
Q Consensus       418 i~~  420 (421)
                      +|.
T Consensus       676 Vfh  678 (733)
T KOG0650|consen  676 VFH  678 (733)
T ss_pred             EEe
Confidence            764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=7.3e-19  Score=154.96  Aligned_cols=235  Identities=16%  Similarity=0.211  Sum_probs=171.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|.+-|.++.|  ++....|++++.||+|++|+++...       ....                              
T Consensus       291 ~s~~d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~-------~s~~------------------------------  331 (577)
T KOG0642|consen  291 RSHDDCIRALAF--HPSEPVLITASEDGTLKLWNLQKAK-------KSAE------------------------------  331 (577)
T ss_pred             ecchhhhhhhhc--CCCCCeEEEeccccchhhhhhcccC-------Cccc------------------------------
Confidence            357888999999  6778899999999999999994411       0000                              


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec--CCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~--~~~~~~~~  186 (421)
                                     ...+++.+| .+|.++|.|+++.++++.+.+| .||+|+.|++..+.......+.  -...+.||
T Consensus       332 ---------------~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh  395 (577)
T KOG0642|consen  332 ---------------KDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH  395 (577)
T ss_pred             ---------------cceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc
Confidence                           001677778 9999999999999999999999 9999999977643332222211  11346899


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc--ccc----hh-hhc------cccccCC--------------C
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHS----AR-ILR------DAAESHG--------------S  239 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~----~~-~~~------~h~~~~~--------------~  239 (421)
                      ++.|+.+++++.. ..|++++.||++++|+......+  ...    .. .++      .|.....              .
T Consensus       396 tdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~  474 (577)
T KOG0642|consen  396 TDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD  474 (577)
T ss_pred             ccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence            9999999999997 88999999999999998765431  000    00 000      0000000              0


Q ss_pred             cccc-------cccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEE
Q 014644          240 KSFF-------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  311 (421)
Q Consensus       240 ~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      ..++       ..-...+..+.++|.+.+.+++.. +.|+++|..+ +.++.....|...+               ++++
T Consensus       475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tsla  538 (577)
T KOG0642|consen  475 LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLA  538 (577)
T ss_pred             eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeecccee---------------ccee
Confidence            0000       111245778889999988888866 9999999987 88888888887755               7999


Q ss_pred             EcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          312 VSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       312 ~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +.|+|-+|++++.|+.+++|.+...
T Consensus       539 i~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ecCCCceEEeecCCceeehhhccch
Confidence            9999999999999999999998754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.6e-16  Score=143.25  Aligned_cols=238  Identities=9%  Similarity=-0.005  Sum_probs=148.3

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLV  215 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iw  215 (421)
                      +....++++|++++|+++  .++.|.+|+++..+. +....    . .........++|+|++ ++|++++ .++.|.+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~----~-~~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~  107 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAA----E-SPLPGSPTHISTDHQG-RFLFSASYNANCVSVS  107 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEee----e-ecCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence            446678999999998765  689999999973332 22111    0 1122346789999999 7777666 58899999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCccee------EEee
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA------TFKI  287 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~------~~~~  287 (421)
                      ++............+..              ......++++|+|+++++++ . +.|.+||+.+.+....      ....
T Consensus       108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence            99743211111111111              23467789999999997654 3 8999999975332211      1111


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCC-Cc--eeEEecCCC------Cccceeeec
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS-AG--GITVEAGKN------ENRKPILQA  357 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~-~~--~~~~~~~~~------~~~~~~~~~  357 (421)
                      ...+                ..+.|+|+|+++++..+ ++.|.+|+++... ..  ...+.....      ....+.++|
T Consensus       174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            1111                57999999999988876 8999999998421 11  222222211      122466777


Q ss_pred             CCcccccccceeeeecc-cCc-ccCCC--CCcccccccc---ccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          358 APRARRSSLSNLTRGLY-RQA-HENSS--SGHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       358 ~~~~~~~~~~~l~~g~~-d~~-~iw~~--~~~~~~~~~~---~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      +  ++     +|+++.. ++. .+|..  .+......++   ......++++|||++|++++  ++.+.+|.
T Consensus       238 d--g~-----~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        238 D--GR-----HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             C--CC-----EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            7  44     6666644 444 77732  2222222222   23566899999999999877  56788885

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.4e-17  Score=136.39  Aligned_cols=232  Identities=13%  Similarity=0.115  Sum_probs=156.7

Q ss_pred             ecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeEEEEEcC
Q 014644          133 YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSR  209 (421)
Q Consensus       133 ~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d  209 (421)
                      +..+|.+-|+++.|.+.|+.+|+| .|++|+|||.+.........    ...+.|.+.|..+.|.+-  | +.+|+++.|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfG-qvvA~cS~D   82 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFG-QVVATCSYD   82 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCcccc-ceEEEEecC
Confidence            346899999999999999999999 99999999976444434332    244779999999999653  5 899999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      +++.||.=..        ...+.|......+..+......|+.+.|.|.  |-.+|+++. |.+|||+.-... .+..+.
T Consensus        83 rtv~iWEE~~--------~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~  153 (361)
T KOG2445|consen   83 RTVSIWEEQE--------KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWT  153 (361)
T ss_pred             Cceeeeeecc--------cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccch
Confidence            9999997532        1122212223334445566789999999995  667777754 999999975322 122221


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCC---CCEEEEeeCC-----CeEEEEecCCCCC---ceeEEecCCCCccceee
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGSYS-----NLLRIFSHGVGSA---GGITVEAGKNENRKPIL  355 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~l~~~s~d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~  355 (421)
                      ........+.+...+..  ...++.|+|.   ..+||.|+.+     +.++||......+   ....+.+|+++|+.++|
T Consensus       154 Lq~Ei~~~~~pp~~~~~--~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQ--PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             hhhhhhhccCCcccccC--cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence            11110000000000000  1168899984   5678888876     5789998876642   24567789999999999


Q ss_pred             ecCCcccccccceeeeecccCcccCCCC
Q 014644          356 QAAPRARRSSLSNLTRGLYRQAHENSSS  383 (421)
Q Consensus       356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~~  383 (421)
                      .|.- |+  +...||+++.||.+||+.+
T Consensus       232 APn~-Gr--~y~~lAvA~kDgv~I~~v~  256 (361)
T KOG2445|consen  232 APNI-GR--SYHLLAVATKDGVRIFKVK  256 (361)
T ss_pred             cccc-CC--ceeeEEEeecCcEEEEEEe
Confidence            8873 22  2678888888888888443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=6.2e-18  Score=137.24  Aligned_cols=219  Identities=20%  Similarity=0.256  Sum_probs=148.0

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      +-++|+||.|  .|++..|++-. |..|.+|+++++... ...                                     
T Consensus       122 avg~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~-vae-------------------------------------  160 (370)
T KOG1007|consen  122 AVGKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKI-VAE-------------------------------------  160 (370)
T ss_pred             HhCceeeEEE--cCCCCeeEEec-cCceEEEEcccCcch-hee-------------------------------------
Confidence            4459999999  46777777666 899999999886511 100                                     


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                       .......+|....++-+|+|  +++.+++..|++++.||+++..+...+-       ..|...
T Consensus       161 -----------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-------dAHgq~  216 (370)
T KOG1007|consen  161 -----------------VLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-------DAHGQR  216 (370)
T ss_pred             -----------------ecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-------hhhcce
Confidence                             00000134666788889998  7999999999999999999544444432       678889


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEe-cC
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR-DY  267 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-~~  267 (421)
                      |..+.|+|+...+|++++.||.|++||.|+.+..   +..+             .+|...|.++.|+|. .++|+++ +|
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el-------------~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQEL-------------PGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---cccc-------------CCCceEEEEEEecCccceEEEecCCC
Confidence            9999999998788999999999999999985432   2333             445889999999996 4566666 45


Q ss_pred             CeEEEEECCCCCcceeEEeeccC-------cc--------cccccc-cCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEE
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEH-------LR--------PKLCDL-YNNDSIFDKFECSVSGD-GLHFATGSYSNLLRI  330 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~-------~~--------~~~~~~-~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~i  330 (421)
                      ..|.+|....-....+....+..       ..        ..+... .+.|++   ++++||.- .-.+|+-|+||.+.|
T Consensus       281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV---Y~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV---YALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             ceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce---EEEeeccCCCeeEEEeccCceEEe
Confidence            88889876431110000000000       00        001111 123333   79999985 445778899999988


Q ss_pred             EecC
Q 014644          331 FSHG  334 (421)
Q Consensus       331 wd~~  334 (421)
                      =.+.
T Consensus       358 s~V~  361 (370)
T KOG1007|consen  358 SSVP  361 (370)
T ss_pred             ecCC
Confidence            6655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.79  E-value=7.4e-18  Score=151.45  Aligned_cols=239  Identities=13%  Similarity=0.124  Sum_probs=173.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|++.|++|+|  +.+|.++|+|+.|+.|.+|.-.-   +-+..+.|.+.+.||.|+|-...+.+++.+.         
T Consensus        50 KgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd---------  115 (1081)
T KOG1538|consen   50 KGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD---------  115 (1081)
T ss_pred             ccccceEEEEEE--ccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh---------
Confidence            389999999999  79999999999999999998543   3344566888777777776665555544432         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                            .-+|+.+..    .+..  ..-..+|.+++|..||++++.| .+|+|.+-+-. +++..++-     .-.+...
T Consensus       116 ------FglWS~~qK----~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~-----Rpgg~Ns  177 (1081)
T KOG1538|consen  116 ------FGLWSPEQK----SVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE-----RPGGSNS  177 (1081)
T ss_pred             ------ccccChhhh----hHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe-----CCCCCCC
Confidence                  334554432    1111  1234578899999999999999 99999998765 44444432     2245678


Q ss_pred             CeeEEEEecCC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          189 VITSAEFHPIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       189 ~v~~~~~~p~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      +|++++|+|..    ...++......++.+|.+........  +.+                .-...++.+.++|++++.
T Consensus       178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--r~L----------------~FdP~CisYf~NGEy~Li  239 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--RAL----------------NFDPCCISYFTNGEYILL  239 (1081)
T ss_pred             CceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--ccC----------------CCCchhheeccCCcEEEE
Confidence            99999999974    24678888888999888765332211  111                224578999999999998


Q ss_pred             ec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          265 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       265 ~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      |+ ++.+++|--+  +-.+-++.....++               +.++..|++++++.|+.||+|-.|++..
T Consensus       240 GGsdk~L~~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  240 GGSDKQLSLFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccCCCceEEEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhhHH
Confidence            75 4999999753  55555554444443               8999999999999999999999998653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=3.5e-15  Score=139.50  Aligned_cols=324  Identities=20%  Similarity=0.293  Sum_probs=216.1

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ...|...|..+.+  .+.+..++.++.|+.+.+|+.....  ...+..... ..+.          -.... .++.....
T Consensus        61 ~~~~~~~i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~-~~~~~~~~  126 (466)
T COG2319          61 LRGHEDSITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVS----------KLALS-SPDGNSIL  126 (466)
T ss_pred             eeeccceEEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-Ccee----------eEEEE-CCCcceEE
Confidence            4578999999999  7889999999999999999988874  222222111 1111          11111 22232222


Q ss_pred             ecccccccceeEEeecc-cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          107 HLEWTENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      ......+..+.+|+... .   .....+ ..|...|..++|+|++..++++ . |+.+++|++. .......+       
T Consensus       127 ~~~~~~d~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  194 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPG---KLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTL-------  194 (466)
T ss_pred             eccCCCCccEEEEEecCCC---eEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEee-------
Confidence            22222244789999886 3   555666 7999999999999999988887 5 9999999998 34444443       


Q ss_pred             CccCCCeeEEEEecCCCC-eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      .+|...+.+++|+|++ . .+++++.|+.|++||...+.....   .+..             |.... ...|+|++.++
T Consensus       195 ~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~~~-------------~~~~~-~~~~~~~~~~~  256 (466)
T COG2319         195 AGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TLSG-------------HSDSV-VSSFSPDGSLL  256 (466)
T ss_pred             ccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ecCC-------------CCcce-eEeECCCCCEE
Confidence            5689999999999998 5 555558999999998875443310   2333             23343 22899999888


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      ++++. +.+++|+++.....+..+..|...+               .++.|.|++..+++++.|+.+.+|++.+.. ...
T Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~  320 (466)
T COG2319         257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLS  320 (466)
T ss_pred             EEecCCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEE
Confidence            87665 9999999986333244444444332               688999988888889889999999888763 333


Q ss_pred             EE--ecCCCCccceeeecCCcccccccceeeee-cccCc-ccCCCCCcc-ccccccccCeEEEEEccCCCeEEE-ec-CC
Q 014644          342 TV--EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHH-ELSYNLSSKLLHLAWHPTTNLIAC-AN-GN  414 (421)
Q Consensus       342 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~d~~-~iw~~~~~~-~~~~~~~~~v~~~~~spd~~~la~-~~-~~  414 (421)
                      ..  ..|...+..+.+ ... +.     .+..+ ..|+. .+|...... .........+..+.+++ ...++. +. ++
T Consensus       321 ~~~~~~~~~~~~~~~~-~~~-~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  392 (466)
T COG2319         321 SLTLKGHEGPVSSLSF-SPD-GS-----LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDG  392 (466)
T ss_pred             EeeecccCCceEEEEE-CCC-CC-----EEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCC
Confidence            33  477777888888 431 12     34444 56666 778433332 22222222388999999 544443 33 66


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .+.+|+
T Consensus       393 ~~~~~~  398 (466)
T COG2319         393 TVRLWD  398 (466)
T ss_pred             ceEEEe
Confidence            788886

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.9e-16  Score=144.26  Aligned_cols=308  Identities=13%  Similarity=0.132  Sum_probs=207.2

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+.|.-.++++++  +|+++++|+|..||.|.+|.--..+..        .                             
T Consensus       201 ~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~~~--------~-----------------------------  241 (792)
T KOG1963|consen  201 TVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDFGSSDD--------S-----------------------------  241 (792)
T ss_pred             hhhhcccceeEEe--ccccceEEEeccCCcEEEEeccccccc--------c-----------------------------
Confidence            4567778999999  799999999999999999973321100        0                             


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                         ...+.+ .-|...|.+++|+++|.+|++| ..+.+-+|.+.++++.  .       ++.-.
T Consensus       242 -------------------~t~t~l-HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--f-------LPRLg  292 (792)
T KOG1963|consen  242 -------------------ETCTLL-HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--F-------LPRLG  292 (792)
T ss_pred             -------------------ccceEE-EecccccceeEEecCCceEeecccceEEEEEeecCCCcc--c-------ccccC
Confidence                               111223 6788999999999999999999 9999999999955532  2       35667


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ++|..+.++||+ .+.+....|..|.+..+.+....    ..+.+ ...+ ....-+...+-.+.++++|--+.++-...
T Consensus       293 s~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k----~tIsg-i~~~-~~~~k~~~~~l~t~~~idpr~~~~vln~~  365 (792)
T KOG1963|consen  293 SPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIK----STISG-IKPP-TPSTKTRPQSLTTGVSIDPRTNSLVLNGH  365 (792)
T ss_pred             CeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhh----hhccC-ccCC-CccccccccccceeEEEcCCCCceeecCC
Confidence            899999999999 88888888999999987664432    22222 1111 00111122456778899995445554444


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC--------CC--eEEEEecCCC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------SN--LLRIFSHGVG  336 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~--------dg--~i~iwd~~~~  336 (421)
                       +.|.+||+-+ ...+..+..-.....   ..+. .....++.++.+-.|.+++|.-.        ||  .+++|-....
T Consensus       366 ~g~vQ~ydl~t-d~~i~~~~v~~~n~~---~~~~-n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  366 PGHVQFYDLYT-DSTIYKLQVCDENYS---DGDV-NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             CceEEEEeccc-cceeeeEEEEeeccc---CCcc-eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence             9999999987 444444432211100   0000 11223467777778999998642        33  5788987654


Q ss_pred             CCc----eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcc----------ccccccccCeEEE
Q 014644          337 SAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHH----------ELSYNLSSKLLHL  399 (421)
Q Consensus       337 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~----------~~~~~~~~~v~~~  399 (421)
                      .+.    ......|.......++.+....     ..+++.+.||. ++|  ...+.+          ....-|..+++.+
T Consensus       441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs-----~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~  515 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVATIFLNPTRS-----VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITAL  515 (792)
T ss_pred             cceeEEEEEEecCCCceeEEEEEecCccc-----ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccch
Confidence            322    3344578777777777665322     26889999999 999  111111          1111357789999


Q ss_pred             EEccCCCeEEEecCCceEEEeC
Q 014644          400 AWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       400 ~~spd~~~la~~~~~~~~i~~~  421 (421)
                      +|+.||..||++.++.|.+|+.
T Consensus       516 ~fs~dGslla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  516 CFSQDGSLLAVSFDDTITIWDY  537 (792)
T ss_pred             hhcCCCcEEEEecCCEEEEecC
Confidence            9999999999999999999973

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=4.6e-18  Score=140.41  Aligned_cols=221  Identities=14%  Similarity=0.192  Sum_probs=148.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|+.++|+| ...++++++|.|.+||+|++++.....+..                                   
T Consensus       132 ~ghG~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-----------------------------------  175 (385)
T KOG1034|consen  132 RGHGGSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFG-----------------------------------  175 (385)
T ss_pred             eccCccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEec-----------------------------------
Confidence            48999999999953 336899999999999999999875322211                                   


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC---------
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK---------  179 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~---------  179 (421)
                                            -+ .+|.+.|.++.|+++|.+|+++ .|.+|++|++... +....++..         
T Consensus       176 ----------------------G~-egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~-~f~~~lE~s~~~~~~~t~  231 (385)
T KOG1034|consen  176 ----------------------GV-EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK-EFKNKLELSITYSPNKTT  231 (385)
T ss_pred             ----------------------cc-ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh-HHhhhhhhhcccCCCCcc
Confidence                                  02 7999999999999999999998 9999999999821 111100000         


Q ss_pred             ------C------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc-ccccccchhhhccccccCCCc----cc
Q 014644          180 ------P------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSK----SF  242 (421)
Q Consensus       180 ------~------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~----~~  242 (421)
                            .      .+-.-|...|-|+.|--   .++++-+-++.|..|..-. ++..    +..    ..+...    ..
T Consensus       232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~----~~v----kp~es~~Ti~~~  300 (385)
T KOG1034|consen  232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESI----HNV----KPPESATTILGE  300 (385)
T ss_pred             CcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhh----hcc----CCCccceeeeeE
Confidence                  0      01234667777777763   6788888899999998732 1111    100    011111    11


Q ss_pred             ccccccceeEE--EEcCCCCEEEEecC-CeEEEEECCCCCcce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644          243 FTEIIASISDI--KFANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  318 (421)
Q Consensus       243 ~~~~~~~v~~~--~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  318 (421)
                      ++-....+.-+  +|.|-++.||.|.. |.+.+||++. .++. ..-..|.....            .|...+|+.||..
T Consensus       301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~~~------------tVRQ~sfS~dgs~  367 (385)
T KOG1034|consen  301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKSGS------------TVRQTSFSRDGSI  367 (385)
T ss_pred             eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccccc------------eeeeeeecccCcE
Confidence            22223345544  45566889999988 9999999986 4432 21111221111            2378899999999


Q ss_pred             EEEeeCCCeEEEEecC
Q 014644          319 FATGSYSNLLRIFSHG  334 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~  334 (421)
                      |+...+|++|.-||..
T Consensus       368 lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  368 LVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEeCCCcEEEEEee
Confidence            9999999999999854

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=1.3e-16  Score=134.96  Aligned_cols=205  Identities=14%  Similarity=0.157  Sum_probs=149.9

Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ..+.+|+++|..++|+|-..+.||+||.|.+|.||++..+.+...          .......+.+|...|.-++|+|.-.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------ltepvv~L~gH~rrVg~V~wHPtA~  144 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------LTEPVVELYGHQRRVGLVQWHPTAP  144 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------cccceEEEeecceeEEEEeecccch
Confidence            355899999999999998778999999999999999988654311          1123334677899999999999744


Q ss_pred             -EEEE-ecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          261 -HLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       261 -~l~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                       .|++ |+|.+|.+|++.+ ++.+-.+. |...+               ++++|+.||.+|++.+.|..|||||.+++ .
T Consensus       145 NVLlsag~Dn~v~iWnv~t-geali~l~-hpd~i---------------~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~  206 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGT-GEALITLD-HPDMV---------------YSMSFNRDGSLLCTTCKDKKVRVIDPRRG-T  206 (472)
T ss_pred             hhHhhccCCceEEEEeccC-CceeeecC-CCCeE---------------EEEEeccCCceeeeecccceeEEEcCCCC-c
Confidence             4444 4569999999998 77776676 66654               79999999999999999999999999988 5


Q ss_pred             ceeEEecCCCCc-cceeeecCCcccccccceeeeec---ccCc-ccCCCC---Cc-cccccccccCeEEEEEccCCCeEE
Q 014644          339 GGITVEAGKNEN-RKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS---GH-HELSYNLSSKLLHLAWHPTTNLIA  409 (421)
Q Consensus       339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~---~d~~-~iw~~~---~~-~~~~~~~~~~v~~~~~spd~~~la  409 (421)
                      ....-.+|.+.- ....|-.+       +..+.+|-   .+.. .+|+..   +. ...-.+.+..|.---|.||..+|.
T Consensus       207 ~v~e~~~heG~k~~Raifl~~-------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY  279 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLAS-------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY  279 (472)
T ss_pred             EeeecccccCCCcceeEEecc-------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence            555557777643 33344444       22444443   3344 788332   22 223345667788888999999988


Q ss_pred             Eec--CCceEEEe
Q 014644          410 CAN--GNSLFFHY  420 (421)
Q Consensus       410 ~~~--~~~~~i~~  420 (421)
                      .++  +++|+-|.
T Consensus       280 l~GKGD~~IRYyE  292 (472)
T KOG0303|consen  280 LCGKGDSSIRYFE  292 (472)
T ss_pred             EEecCCcceEEEE
Confidence            776  56677663

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=2.3e-18  Score=158.22  Aligned_cols=273  Identities=17%  Similarity=0.197  Sum_probs=198.2

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      -++|-.+|.|+.|  +..|.++++|+.|..|+||..+++                                         
T Consensus       186 LlgH~naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~-----------------------------------------  222 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIF--DRTGRYIITGSDDRLVKIWSMETA-----------------------------------------  222 (1113)
T ss_pred             HHhhhhheeeeee--ccccceEeecCccceeeeeeccch-----------------------------------------
Confidence            3589999999999  788999999999999999997764                                         


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                         .|+... .||.+.|+.++.+.+..+++++ .|..|++|.+. .+..+.++       .+|+
T Consensus       223 -------------------~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~pvsvL-------rght  274 (1113)
T KOG0644|consen  223 -------------------RCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAPVSVL-------RGHT  274 (1113)
T ss_pred             -------------------hhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecC-CCchHHHH-------hccc
Confidence                               333344 8999999999999999899998 99999999998 67777655       8999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      +.|++++|+|-.     +.+.||++++||.+-..      ..+..     ....  ......+.++.|..++.-+++++.
T Consensus       275 gavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~p-----rp~~--~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  275 GAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVP-----RPLK--FTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cceeeeccCccc-----cCCCCCceEeccccccc------cccCC-----CCCC--cccccceeeeeccccccccccccC
Confidence            999999999963     67899999999988211      11111     0000  001356778888888888888876


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                       +.-..|.+.. -.      .+...           .+    =+.++.+ ..+.++.-.+-.+.+|++.++ .+...+.+
T Consensus       337 d~ea~n~e~~~-l~------~~~~~-----------li----f~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~g  393 (1113)
T KOG0644|consen  337 DGEARNHEFEQ-LA------WRSNL-----------LI----FVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMG  393 (1113)
T ss_pred             CcccccchhhH-hh------hhccc-----------eE----EEeccccccccceeeeeeeEeeeeecccc-hhhhhhcc
Confidence             7777777642 10      11100           00    0111112 245666777888999999998 88899999


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc---cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH---HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~---~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      |.+++..+.++|-.+.      ...+.+.||. .||+..+-   ....++ ...+.+-+||+||+.+++.. -+.++|+.
T Consensus       394 hsd~~yvLd~Hpfn~r------i~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPR------IAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             cccceeeeeecCCCcH------hhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEec
Confidence            9999999999987542      3456778888 88833221   112244 34556789999999998877 45688875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.2e-16  Score=150.78  Aligned_cols=265  Identities=12%  Similarity=0.150  Sum_probs=175.1

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC-Cc--eeEEeeecCCCCCcccccccccccceeeccCC-CCceeeeec
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHL  108 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~g  108 (421)
                      ...|+.+++.+..|..++++|+.||.||||+-. +.  +.+.......   ..++.......+ ...++. .++..+.+|
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~---Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS---LSDQLPGARGTG-LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc---ccccCccCCCCC-eeeehhhhCCeEEecC
Confidence            357899999877778899999999999999833 21  1121111100   001111111111 112222 122333333


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCce--eeeeeecCCCCCC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMD  184 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~  184 (421)
                      .   ...+++||.+..   .+.+.+..+-...|+++.-+. .|..+++| .||.|++||.+....  .+..       .+
T Consensus      1185 d---~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-------~R 1251 (1387)
T KOG1517|consen 1185 D---VRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-------YR 1251 (1387)
T ss_pred             C---eeEEEEEecccc---eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-------ec
Confidence            2   347999999887   666655455566778776543 47999999 999999999884433  3333       26


Q ss_pred             ccCCC--eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          185 DLTEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       185 ~~~~~--v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      .|+..  |..+.+.+.|-..|++|+.||.|++||+|... ...... ...|          -...+..+++..+++...+
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~----------~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAH----------WEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccce-eeec----------cccCccceeeeeccCCCee
Confidence            78776  99999999885569999999999999999842 111111 1111          0002258999999999999


Q ss_pred             EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |+|+.+.|+||++.  ++.+..++......        ...+-.+.+++|+|-.-++|+|+.|..|.||.....
T Consensus      1320 AsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99988899999985  66665555433221        112223368999999889999999999999987654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=9.6e-17  Score=133.38  Aligned_cols=266  Identities=11%  Similarity=0.066  Sum_probs=168.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      +|+..++.++|........+.+++.||+||+||++... ..++.....++           ....+.+.+-....++.|.
T Consensus        68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~-----------~~f~~ld~nck~~ii~~Gt  136 (376)
T KOG1188|consen   68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG-----------TPFICLDLNCKKNIIACGT  136 (376)
T ss_pred             CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC-----------CcceEeeccCcCCeEEecc
Confidence            67888999999743356789999999999999998765 33333333332           2344555554555566665


Q ss_pred             c--ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          110 W--TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       110 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      .  ..+..+.+||+....  ++++.+...|.+.|+++.|+| +-++|++| -||-|.|+|++...+.-...     ..-.
T Consensus       137 E~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~-----~viN  209 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL-----HVIN  209 (376)
T ss_pred             ccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH-----Hhhc
Confidence            5  445588999998762  336777688999999999999 56788888 99999999998443221111     1134


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCCCEEE-
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-  263 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-  263 (421)
                      |...|.++.|..++-+.|.+-+...+..+|++..+.......+. +..    ...+ . ......+-......++...+ 
T Consensus       210 ~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~----~d~r-~-~~~~dY~I~~~~~~~~~~~~l  283 (376)
T KOG1188|consen  210 HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA----DDLR-K-EDNCDYVINEHSPGDKDTCAL  283 (376)
T ss_pred             ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh----hhHH-h-hhhhhheeecccCCCcceEEE
Confidence            66779999999987668999999999999999987632110000 000    0000 0 00011111111112333433 


Q ss_pred             EecC-CeEEEEECCC--C---CcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          264 SRDY-MNLKLWDIRM--D---STPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      .+++ +...++-+..  .   .+....+.+ |...+               +++.|...+..+.+|++||.+.+|..+.
T Consensus       284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV---------------R~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV---------------RDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eccccCceeEEEeeecccccccCccccccCCcHHHH---------------HHHhhhcccceeeccCCCceEEEEecCC
Confidence            4454 5555555431  1   233444555 33332               6778888889999999999999999643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.8e-15  Score=120.15  Aligned_cols=292  Identities=11%  Similarity=0.089  Sum_probs=183.5

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .|.+-+|  +|.+++|++|..+|+|-+..+.+--..   ....++                                   
T Consensus        12 tvf~qa~--sp~~~~l~agn~~G~iav~sl~sl~s~---sa~~~g-----------------------------------   51 (325)
T KOG0649|consen   12 TVFAQAI--SPSKQYLFAGNLFGDIAVLSLKSLDSG---SAEPPG-----------------------------------   51 (325)
T ss_pred             HHHHHhh--CCcceEEEEecCCCeEEEEEehhhhcc---ccCCCC-----------------------------------
Confidence            3455567  688999999999999999998652100   000000                                   


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCce---eeeeeecCCCCCC--ccCCC
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ---CFNIVDMKPSNMD--DLTEV  189 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~---~~~~~~~~~~~~~--~~~~~  189 (421)
                                  ...+-.. ++|.++|+.++|.  ..+|+++.||.|+-|..++..+   +.+..+.+++.-.  ..--.
T Consensus        52 ------------k~~iv~e-qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe  116 (325)
T KOG0649|consen   52 ------------KLKIVPE-QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE  116 (325)
T ss_pred             ------------Ccceeec-cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence                        0222233 7999999999998  5688888789999998763322   1112211111000  11235


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |.++-..|.. +.++.++.|+.++.||+.+|+..    +.+.+|             .+.+.++.--.....+++|++ |
T Consensus       117 INam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~----r~~rGH-------------tDYvH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  117 INAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ----REYRGH-------------TDYVHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             cceeEeccCC-CcEEEecCCeEEEEEEecCCEEE----EEEcCC-------------cceeeeeeecccCcceeecCCCc
Confidence            7889999998 77777789999999999999865    566664             889999998555556677655 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      ++|+||+++ ++.++.+....... .+.+ . ...    +-.+..-+..+|++|+ ...+.+|.++.. ....++ .-..
T Consensus       179 tvRvWd~kt-~k~v~~ie~yk~~~-~lRp-~-~g~----wigala~~edWlvCGg-Gp~lslwhLrss-e~t~vf-pipa  247 (325)
T KOG0649|consen  179 TVRVWDTKT-QKHVSMIEPYKNPN-LLRP-D-WGK----WIGALAVNEDWLVCGG-GPKLSLWHLRSS-ESTCVF-PIPA  247 (325)
T ss_pred             cEEEEeccc-cceeEEeccccChh-hcCc-c-cCc----eeEEEeccCceEEecC-CCceeEEeccCC-CceEEE-eccc
Confidence            999999998 88887776543321 0000 0 000    1134444666777665 467999999976 333322 2344


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccc-cCeEEEEEccCCCeEEEec--CCceEEE
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS-SKLLHLAWHPTTNLIACAN--GNSLFFH  419 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~-~~v~~~~~spd~~~la~~~--~~~~~i~  419 (421)
                      ++..+.|..+         .+.+++.... .-|..++.+....... ...++.+|+-..-.+++..  .+.+-|+
T Consensus       248 ~v~~v~F~~d---------~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  248 RVHLVDFVDD---------CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceeEeeeecc---------eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            5566677665         5666665555 7786665555554443 3456666765544444333  5556554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.7e-16  Score=132.97  Aligned_cols=288  Identities=14%  Similarity=0.069  Sum_probs=200.6

Q ss_pred             cceeeccCCCCceeeeecccccccceeEEeecccce---eeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC
Q 014644           91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH---ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  166 (421)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~  166 (421)
                      +.|.++.++...+|+++|.-  +..+++|.++....   .++++.....|...|.||+|....++|.+| .+++|.+.|+
T Consensus        57 GCiNAlqFS~N~~~L~SGGD--D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   57 GCINALQFSHNDRFLASGGD--DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             cccceeeeccCCeEEeecCC--cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            46777888888999999876  45789999886432   356666645667899999999999999999 9999999999


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      + ..+.+.+.     .-....+.|+.+..+|.. +.|++.+.++.|.+||.+.......   .+-           +...
T Consensus       135 E-t~qsi~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~---~~~-----------~AN~  193 (609)
T KOG4227|consen  135 E-TKQSIYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS---LVL-----------PANS  193 (609)
T ss_pred             c-cceeeeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc---eee-----------ecCC
Confidence            9 55555443     112334589999999997 9999999999999999987542111   111           1122


Q ss_pred             ccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          247 IASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       247 ~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      ......+.|+|... +|++.+. +.+.+||.+.+..++....+..+...      ++..   ..++-|+|+|..+++--.
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~------~~~~---~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ------ENTE---WMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc------cchh---hhheeeCCCCCeehhhhc
Confidence            44667889999654 5566666 88999999875555544332222110      0000   147899999998887766


Q ss_pred             CCeEEEEecCCCCCceeEEecC-C-------CCccceeeecCCcccccccceeeeecccCc-ccCCC------C------
Q 014644          325 SNLLRIFSHGVGSAGGITVEAG-K-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS------S------  383 (421)
Q Consensus       325 dg~i~iwd~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~------~------  383 (421)
                      ...-.+||+...  ...+++.. .       -.+.++.|..++        .+++|+.+-. .+|..      .      
T Consensus       265 ~~~P~~~D~~S~--R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--------~v~tGSD~~~i~~WklP~~~ds~G~~~IG  334 (609)
T KOG4227|consen  265 GKCPLYFDFISQ--RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--------TVATGSDHWGIHIWKLPRANDSYGFTQIG  334 (609)
T ss_pred             cCCCEEeeeecc--cceeEeccCCCCcceeeeeeeeeeeecce--------eeeccCcccceEEEecCCCccccCccccC
Confidence            555567787754  22333322 1       135666776662        5889998887 99921      1      


Q ss_pred             -------------CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          384 -------------GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       384 -------------~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                                   +.+..+.+|..-+..+.|+|...+|++.+ .+.+.||.
T Consensus       335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence                         12234568888999999999999998777 67799985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.74  E-value=4.3e-17  Score=145.81  Aligned_cols=226  Identities=16%  Similarity=0.244  Sum_probs=159.0

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      -...|+.+.|-| -|...||.++.||.|+||.+..+.+.....                                     
T Consensus       626 Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-------------------------------------  667 (1012)
T KOG1445|consen  626 NGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEM-------------------------------------  667 (1012)
T ss_pred             cCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccC-------------------------------------
Confidence            356799999932 367899999999999999988754221111                                     


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                      .+...+ ..|.+.|.++.|+| ....|+++ .|.+|++||+. +.....       .+.+|++.
T Consensus       668 ----------------tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~-------~l~gHtdq  722 (1012)
T KOG1445|consen  668 ----------------TPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAKLYS-------RLVGHTDQ  722 (1012)
T ss_pred             ----------------Ccceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehh-hhhhhh-------eeccCcCc
Confidence                            344455 88999999999999 56678888 99999999999 444443       34899999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-e---
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R---  265 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~---  265 (421)
                      |.+++|+|+| +.+++.+.||+|++|+.+++..     .+.++    +...      ...-..+.|..||+++++ |   
T Consensus       723 If~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg----~gpv------gtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  723 IFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEG----KGPV------GTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             eeEEEECCCC-cceeeeecCceEEEeCCCCCCC-----ccccC----CCCc------cCcceeEEEEecCcEEEEecccc
Confidence            9999999999 9999999999999999988653     22222    1110      123356889899998875 3   


Q ss_pred             -cCCeEEEEECCCC-CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          266 -DYMNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       266 -~~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                       +..+|.+||..+- ..++.+....-....              .--.+.+|. -++++|-.|..|++|.+-....-...
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lp  852 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLP  852 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCceeee
Confidence             2278999997642 233333322221110              112455564 45678889999999998876555666


Q ss_pred             EecCCCCc
Q 014644          343 VEAGKNEN  350 (421)
Q Consensus       343 ~~~~~~~~  350 (421)
                      +..|..++
T Consensus       853 l~~f~sp~  860 (1012)
T KOG1445|consen  853 LAPFMSPV  860 (1012)
T ss_pred             cccccCCC
Confidence            66665554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=3e-16  Score=145.82  Aligned_cols=217  Identities=13%  Similarity=0.148  Sum_probs=145.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCC---CcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d---~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      .|...+...+|  +|+|+.|+.++.+   ..|++||+.+++.+.+.                                  
T Consensus       201 ~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------------------------------  244 (429)
T PRK01742        201 RSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------------------------------  244 (429)
T ss_pred             cCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe----------------------------------
Confidence            56678899999  7899988887654   36899998776522221                                  


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEE--eCCCCceeeeeeecCCCCC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~  183 (421)
                                              .+ .+|.   ..++|+|||+.|+.+  .++.+.||  |+. ++... .+       
T Consensus       245 ------------------------~~-~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~-~l-------  287 (429)
T PRK01742        245 ------------------------SF-RGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPS-QL-------  287 (429)
T ss_pred             ------------------------cC-CCcc---CceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeE-ee-------
Confidence                                    11 3332   357999999988875  57876666  554 33332 22       


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      ..+...+.++.|+|+| +.|+.++ .++..+||++.......   ..+..              ..  ....|+|||++|
T Consensus       288 t~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~i  347 (429)
T PRK01742        288 TSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTL  347 (429)
T ss_pred             ccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEE
Confidence            4456678889999999 7666554 67888888875432110   11111              22  357899999999


Q ss_pred             EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC-CCCcee
Q 014644          263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-GSAGGI  341 (421)
Q Consensus       263 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~-~~~~~~  341 (421)
                      +..+...+.+||+.+ ++..........                 .+++|+|||++|+.++.+|.+.+|++.. .+....
T Consensus       348 a~~~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~  409 (429)
T PRK01742        348 VMINGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA  409 (429)
T ss_pred             EEEcCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence            877655567799975 543322111111                 3678999999999999999888887632 235677


Q ss_pred             EEecCCCCccceeeecC
Q 014644          342 TVEAGKNENRKPILQAA  358 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~  358 (421)
                      .+..|.+.+...+|+|.
T Consensus       410 ~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        410 RLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EccCCCCCCCCcccCCC
Confidence            78888888888888875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.9e-14  Score=121.12  Aligned_cols=241  Identities=12%  Similarity=0.188  Sum_probs=156.7

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...++.+.|  +.+...|..|+.||. ++++.+.... ....  ..+          ...|.-.-++.+.-.+...  ..
T Consensus         5 ~~ti~~~~~--Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~--~~~----------~~~IvEmLFSSSLvaiV~~--~q   66 (391)
T KOG2110|consen    5 KPTINFIGF--NQDSTLLSVGSKDGY-KIFSCSPFEK-CFSK--DTE----------GVSIVEMLFSSSLVAIVSI--KQ   66 (391)
T ss_pred             Ccceeeeee--ccceeEEEccCCCce-eEEecCchHH-hhcc--cCC----------CeEEEEeecccceeEEEec--CC
Confidence            345667777  777888888888874 7777665431 1100  000          1112222222222222211  11


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      ....++.+..... .-|.-.    ...+|.++.++  -+.|+.+ .+ .|+|||++ ..+.+.+++    +.+.+...+.
T Consensus        67 pr~Lkv~~~Kk~~-~ICe~~----fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~-~MklLhTI~----t~~~n~~gl~  133 (391)
T KOG2110|consen   67 PRKLKVVHFKKKT-TICEIF----FPTSILAVRMN--RKRLVVCLEE-SIYIYDIK-DMKLLHTIE----TTPPNPKGLC  133 (391)
T ss_pred             CceEEEEEcccCc-eEEEEe----cCCceEEEEEc--cceEEEEEcc-cEEEEecc-cceeehhhh----ccCCCccceE
Confidence            1233333333220 011111    24567777776  4677777 44 49999999 667777663    2234556677


Q ss_pred             EEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          192 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      ++++++.+ .+++.-+  ..|.|.+||+.+-+..    ..+..             |++.+.+++|+++|.+||++++ |
T Consensus       134 AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I~a-------------H~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  134 ALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTINA-------------HKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             eeccCCCC-ceEEecCCCCCceEEEEEcccceee----eEEEe-------------cCCceeEEEECCCCCEEEEeccCc
Confidence            77777776 6777543  4589999999875433    44445             5999999999999999999998 6


Q ss_pred             e-EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          269 N-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       269 ~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      + ||++.+.. ++.+..|+.....+             .+.+++|+|++++|++.|..++|+|+.+...
T Consensus       196 TVIRVf~v~~-G~kl~eFRRG~~~~-------------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  196 TVIRVFSVPE-GQKLYEFRRGTYPV-------------SIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEEEEcCC-ccEeeeeeCCceee-------------EEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            5 89999986 88888887666543             2369999999999999999999999999865

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=3.1e-16  Score=133.17  Aligned_cols=291  Identities=16%  Similarity=0.232  Sum_probs=182.6

Q ss_pred             CCccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCC
Q 014644           22 PEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  100 (421)
Q Consensus        22 ~~~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (421)
                      ...+|+..+ .|+.+||+|+|  +|+|++||+|+.+|.|.+|....-...   ......                     
T Consensus        53 ~~V~y~s~Ls~H~~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~---------------------  106 (434)
T KOG1009|consen   53 MKVEYLSSLSRHTRAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTEA---------------------  106 (434)
T ss_pred             eeEEEeecccCCcceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccchh---------------------
Confidence            356777776 58999999999  799999999999999999986641110   000000                     


Q ss_pred             CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644          101 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       101 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                                  ......|        ...+.+ .+|...|..++|+|++.+++++ .|.++++||+. .++...++   
T Consensus       107 ------------~~~ke~w--------~v~k~l-r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~~---  161 (434)
T KOG1009|consen  107 ------------DLNKEKW--------VVKKVL-RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAIL---  161 (434)
T ss_pred             ------------hhCccce--------EEEEEe-cccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEeec---
Confidence                        0000011        333445 8899999999999999999999 99999999999 67777654   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch-hhhcc----ccccCCCcccc--cccccceeE
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRD----AAESHGSKSFF--TEIIASISD  252 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~----h~~~~~~~~~~--~~~~~~v~~  252 (421)
                          .+|...+..++|.|-+ +++++-+.|...+.+.+...+...... ..+..    |.+....+ .+  ..-..-...
T Consensus       162 ----~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r-LfhDeTlksFFrR  235 (434)
T KOG1009|consen  162 ----DDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR-LFHDETLKSFFRR  235 (434)
T ss_pred             ----cccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee-eeecCchhhhhhh
Confidence                7899999999999998 999999988877777765543221110 00000    00111100 01  011223457


Q ss_pred             EEEcCCCCEEEEec-----CC-----eEEEEECCCCCcceeEEeeccCccc--ccccccCCCcceeeeEEEEc-CCCCEE
Q 014644          253 IKFANDGQHLLSRD-----YM-----NLKLWDIRMDSTPVATFKIHEHLRP--KLCDLYNNDSIFDKFECSVS-GDGLHF  319 (421)
Q Consensus       253 ~~~s~~~~~l~~~~-----~~-----~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s-p~~~~l  319 (421)
                      ++|+|||.++++..     .+     ..++|+-..-.++...+........  +.+..+-.-..+......|+ |-+..+
T Consensus       236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence            88999999998632     12     3355554332444444433332210  00111000000000011111 222333


Q ss_pred             EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644          320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~  377 (421)
                      +.++ ...|+|||.++.......-.-|...++.++|+++       +..|+..+.||-
T Consensus       316 aiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~d-------g~~l~vSS~DGy  365 (434)
T KOG1009|consen  316 AIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD-------GSVLLVSSTDGF  365 (434)
T ss_pred             EEee-cceEEEeccccccceEEEeeeeeeeecceeecCC-------CcEEEEeccCCc
Confidence            4444 5789999999876777888899999999999999       448999999987

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=7.1e-16  Score=143.34  Aligned_cols=214  Identities=12%  Similarity=0.106  Sum_probs=140.0

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d  209 (421)
                      ..|...+.+.+|+|||+.|+.. . +  ..|++||+. +++...+.     .+.++   ...++|+||| +.|+.++ .+
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~~l~-----~~~g~---~~~~~wSPDG-~~La~~~~~~  269 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARKVVA-----SFRGH---NGAPAFSPDG-SRLAFASSKD  269 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceEEEe-----cCCCc---cCceeECCCC-CEEEEEEecC
Confidence            5677789999999999999875 3 2  469999998 33322221     12333   3468999999 7777654 67


Q ss_pred             CeEEEE--ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEE
Q 014644          210 GFVRLV--DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 ~~v~iw--d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~  285 (421)
                      |.+.||  |+..+..     ..+..             +...+....|+|||+.|+..+ . +...||++...+.....+
T Consensus       270 g~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        270 GVLNIYVMGANGGTP-----SQLTS-------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CcEEEEEEECCCCCe-----Eeecc-------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            876665  5554432     11111             245678899999999887654 3 778888875433333333


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                       .+..                 ...+|+|||++|+..+.++ +.+||+.++.. .......  ....+.|+|+  ++   
T Consensus       332 -~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~--~~~~~~~sPd--G~---  384 (429)
T PRK01742        332 -GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGST-EVLSSTF--LDESPSISPN--GI---  384 (429)
T ss_pred             -cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCC--CCCCceECCC--CC---
Confidence             2221                 2468999999998887765 55699987732 2222222  3456789988  44   


Q ss_pred             cceeeeecccCc-ccC---C-CCCccccccccccCeEEEEEccCC
Q 014644          366 LSNLTRGLYRQA-HEN---S-SSGHHELSYNLSSKLLHLAWHPTT  405 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw---~-~~~~~~~~~~~~~~v~~~~~spd~  405 (421)
                        .|+.++.++. .+|   . .+........+...+..++|||-.
T Consensus       385 --~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        385 --MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             --EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence              7888877777 666   2 344455555677788999999853

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=3.3e-15  Score=138.22  Aligned_cols=273  Identities=13%  Similarity=0.024  Sum_probs=181.1

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCccCCCee
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~  191 (421)
                      .+.+|++...  ..+...+  .-...|.++.|+|. ..+++.| .+|.|.+||++..... ...+   ......|..++.
T Consensus       223 ~~~vW~~~~p--~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---s~~~~sh~~~v~  295 (555)
T KOG1587|consen  223 VLLVWSLKNP--NTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---SALEVSHSEPVT  295 (555)
T ss_pred             eEEEEecCCC--CCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---ccccccCCcCeE
Confidence            5778988776  2444444  34568999999994 5566667 9999999999844432 1111   112356899999


Q ss_pred             EEEEecCC-CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-C
Q 014644          192 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-M  268 (421)
Q Consensus       192 ~~~~~p~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~  268 (421)
                      .+.|..+. +.-+++++.||.|..|+++.-....   .....  +.......-......+++++|.+. -..++.|++ |
T Consensus       296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~---e~~~~--~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV---EGLLL--ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             EEEEeccCCCCceEEEecCCcEeeeeccccccch---hhccc--ccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            99997764 1348999999999999887643210   11110  000000000111346889999984 456677877 8


Q ss_pred             eEEEEECCC-CCcc------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          269 NLKLWDIRM-DSTP------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       269 ~i~i~d~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      .|.--.... ....      ...+..|.+.+               ..+.++|=+..++..+.|-+++||.-........
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v---------------~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~  435 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPV---------------YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL  435 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcce---------------EeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence            877633321 1112      22233333333               7889998665555444499999999874446677


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC----CCCccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      .+..+.+.+..++|+|.++.      .|+++..+|. .+|+    ..+............+.+.|++.|+.|++|. .|.
T Consensus       436 ~~~~~~~~v~~vaWSptrpa------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPA------VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             hhhhccceeeeeEEcCcCce------EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc
Confidence            77788888999999999754      5899999999 9993    3344444444466678889999999999999 455


Q ss_pred             eEEEe
Q 014644          416 LFFHY  420 (421)
Q Consensus       416 ~~i~~  420 (421)
                      +.+|.
T Consensus       510 ~~~~~  514 (555)
T KOG1587|consen  510 THILK  514 (555)
T ss_pred             EEEEE
Confidence            88875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.4e-15  Score=142.16  Aligned_cols=244  Identities=13%  Similarity=0.153  Sum_probs=156.4

Q ss_pred             cceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCc----eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          139 FNINSISNNS--DCETFVSA-DDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       139 ~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      ..|+.+.+-.  |..++++| .||.|+||+--...    +++.-...-...+.+-.+.=.-+.|.... .+|++++.-..
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRS 1188 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeE
Confidence            3466666643  45678888 99999999754232    22222210001111111222345677765 67777777889


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEe-cCCeEEEEECCCCCc--ceeEEee
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDST--PVATFKI  287 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-~~~~i~i~d~~~~~~--~~~~~~~  287 (421)
                      |+|||......+    ..+..            +....++++.-+- .|..+++| .||.|++||.+....  .+..++.
T Consensus      1189 IRIWDa~~E~~~----~diP~------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVV----ADIPY------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred             EEEEecccceeE----eeccc------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence            999999876543    11111            0134566665443 46888888 459999999987433  6777887


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCE-EEEeeCCCeEEEEecCCC-CCceeEEecCC--C-CccceeeecCCccc
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FATGSYSNLLRIFSHGVG-SAGGITVEAGK--N-ENRKPILQAAPRAR  362 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~  362 (421)
                      |....+             |..+.+.++|-- |++|+.||.|++||++.. ......+..|.  + ..+++..+.+    
T Consensus      1253 h~~~~~-------------Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h---- 1315 (1387)
T KOG1517|consen 1253 HNDVEP-------------IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH---- 1315 (1387)
T ss_pred             cCCccc-------------ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC----
Confidence            876531             257888886544 999999999999999984 22233444444  3 3677777776    


Q ss_pred             ccccceeeeecccCc-ccCCC-CCccccccc-------cccCeEEEEEccCCCeEEEecCCc-eEEEe
Q 014644          363 RSSLSNLTRGLYRQA-HENSS-SGHHELSYN-------LSSKLLHLAWHPTTNLIACANGNS-LFFHY  420 (421)
Q Consensus       363 ~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~-------~~~~v~~~~~spd~~~la~~~~~~-~~i~~  420 (421)
                         ...+|+|+. +. +||+. ++.+...+.       -...+.+++|||-.-+||+|+.|+ +.||.
T Consensus      1316 ---apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1316 ---APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ---CCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence               338899998 66 99944 333332221       134678999999999999999554 77764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=3.3e-14  Score=128.18  Aligned_cols=271  Identities=11%  Similarity=0.113  Sum_probs=159.2

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEE-eCCCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~-s~d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      ..++.+.+.+....+.+  +|++++|+++ ..++.|.+|+++. +.+.........+.            ...+.+++++
T Consensus        26 ~~~~~~~~~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~------------p~~i~~~~~g   91 (330)
T PRK11028         26 TLLQVVDVPGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS------------PTHISTDHQG   91 (330)
T ss_pred             eeeeEEecCCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC------------ceEEEECCCC
Confidence            34455555566778888  7899887665 4588999999973 44433332222221            2234444555


Q ss_pred             eeeeecccccccceeEEeeccc-ceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecC
Q 014644          103 AHGYHLEWTENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                      .++...... .+.+.+|+++.. ...+.+..+ . +......++++|++++++++  .++.|.+||+++.+.+..... .
T Consensus        92 ~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~-~  167 (330)
T PRK11028         92 RFLFSASYN-ANCVSVSPLDKDGIPVAPIQII-E-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP-A  167 (330)
T ss_pred             CEEEEEEcC-CCeEEEEEECCCCCCCCceeec-c-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC-C
Confidence            555544432 346778887632 111233333 2 23446788999999988764  789999999984333211000 0


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEc-CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                      ..... .......+.|+|++ ++++++.. +++|.+||+.......+....+..+   +..   .. +......+.++|+
T Consensus       168 ~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~---p~~---~~-~~~~~~~i~~~pd  238 (330)
T PRK11028        168 EVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM---PAD---FS-DTRWAADIHITPD  238 (330)
T ss_pred             ceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC---CCc---CC-CCccceeEEECCC
Confidence            00111 12345789999999 88877765 8999999997421000111111110   000   00 1123446899999


Q ss_pred             CCEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCC
Q 014644          259 GQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV  335 (421)
Q Consensus       259 ~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~  335 (421)
                      |++++++..  +.|.+|++...+... .+..+.... .           ....+.++|+|++|+++.. +++|.+|+++.
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~-~-----------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE-T-----------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc-c-----------cCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            999988743  899999997533222 222221100 0           0157899999999998775 89999998863

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=2.7e-13  Score=126.72  Aligned_cols=318  Identities=20%  Similarity=0.276  Sum_probs=210.4

Q ss_pred             ccEEEEEEEEcCCCC-eEEEEeC-CCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           34 EKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~-~l~t~s~-d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      ..+..+.+. .+++. .++..+. |+.+++|+... ...... ...+..            .+..+.+.+....+..+..
T Consensus       110 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~------------~v~~~~~~~~~~~~~~~~~  175 (466)
T COG2319         110 SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRT-LEGHSE------------SVTSLAFSPDGKLLASGSS  175 (466)
T ss_pred             CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEE-EecCcc------------cEEEEEECCCCCEEEecCC
Confidence            367888886 67776 5555455 99999999987 332211 122333            3334555555554444432


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                       .+..+++|+....   ..+..+ .+|...|.+++|+|++. .++++ .|+.|++||.. .+.....      .+.+|..
T Consensus       176 -~~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~  243 (466)
T COG2319         176 -LDGTIKLWDLRTG---KPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSD  243 (466)
T ss_pred             -CCCceEEEEcCCC---ceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCc
Confidence             3668899999875   677777 78999999999999998 66665 89999999887 4444431      1266766


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .. ...|+|++ ..+++++.|+.+++|+++.....   ...+..             |...+.++.|.|++..+++++. 
T Consensus       244 ~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~d  305 (466)
T COG2319         244 SV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSG-------------HSSSVLSVAFSPDGKLLASGSSD  305 (466)
T ss_pred             ce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEec-------------CCccEEEEEECCCCCEEEEeeCC
Confidence            64 33899998 88999999999999999875431   111122             3678999999998888887654 


Q ss_pred             CeEEEEECCCCCcceeEEe--eccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEe
Q 014644          268 MNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +.+.+||... ........  .|...+               ..+.|.+++..++.+ ..|+.+.+|++.... ......
T Consensus       306 ~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~  368 (466)
T COG2319         306 GTVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLE  368 (466)
T ss_pred             CcEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEec
Confidence            7799999876 44444443  444322               567773343455555 678999999998774 222222


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc-cccccccc-cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-~~~~~~~~-~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .. ..+..+.+.+ . ..     ....+..++. .+|..... ........ ..+....+.+++..++.++ .+.+.+|.
T Consensus       369 ~~-~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         369 GH-SNVLSVSFSP-D-GR-----VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             CC-ceEEEEEECC-C-CC-----EEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            22 2256666665 3 33     3334677777 89933322 22222222 7899999999999999866 56688885

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=1.5e-15  Score=125.33  Aligned_cols=214  Identities=12%  Similarity=0.116  Sum_probs=152.7

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      -.++|+|.+|++|.+.+|.+ ....|.||... +.+.....    .++..|...|++++|+|.. +.|++++.|..-++|
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~-~~~~w~~~----htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSML-GADLWEPA----HTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW   82 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEec-CCCCceec----eehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence            35689999999999999999 88899999988 44434333    3568899999999999998 999999999999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc-ee--EEeeccCc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP-VA--TFKIHEHL  291 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~-~~--~~~~~~~~  291 (421)
                      ....+......+.+++.              +...+++.|+|.++.+++|+. ..|.||-++.+..- +.  .-+.....
T Consensus        83 ~~~~~~~WkptlvLlRi--------------NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt  148 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRI--------------NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST  148 (361)
T ss_pred             ccCCCCeeccceeEEEe--------------ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence            98665444333333333              778999999999999999987 88999988642221 11  11112222


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                                     |++++|+|++-+|++|+.|+..|++..--.     .+..          .|..            
T Consensus       149 ---------------v~sldWhpnnVLlaaGs~D~k~rVfSayIK-----~Vde----------kpap------------  186 (361)
T KOG1523|consen  149 ---------------VTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-----GVDE----------KPAP------------  186 (361)
T ss_pred             ---------------eeeeeccCCcceecccccCcceeEEEEeee-----cccc----------CCCC------------
Confidence                           279999999999999999999999874311     0000          0000            


Q ss_pred             ecccCcccCC----CCCccccccccccCeEEEEEccCCCeEEEecCC-ceEE
Q 014644          372 GLYRQAHENS----SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFF  418 (421)
Q Consensus       372 g~~d~~~iw~----~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~-~~~i  418 (421)
                            ..|.    .++++.+.....+.|..+.|+|+|+.||-.+.| .+.+
T Consensus       187 ------~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  187 ------TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF  232 (361)
T ss_pred             ------CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence                  1221    122333333445789999999999999988744 4544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=1.4e-16  Score=137.47  Aligned_cols=262  Identities=12%  Similarity=0.125  Sum_probs=198.3

Q ss_pred             EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccce
Q 014644           37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  116 (421)
Q Consensus        37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  116 (421)
                      ..+.+  +.+|.+|+.|+.-|.|-.+|+.++.+.+-                                            
T Consensus       133 Y~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~E--------------------------------------------  166 (545)
T KOG1272|consen  133 YHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFE--------------------------------------------  166 (545)
T ss_pred             eeeee--cCCccEEEecCCccceeeeecccceeeee--------------------------------------------
Confidence            56777  68899999999999999999998763321                                            


Q ss_pred             eEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644          117 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  196 (421)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  196 (421)
                                        ..-...|.++.|..+.+++|.+....+.+||-. +.++. ++       ..| ..|..+.|.
T Consensus       167 ------------------i~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH-Cl-------k~~-~~v~rLeFL  218 (545)
T KOG1272|consen  167 ------------------INVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH-CL-------KRH-IRVARLEFL  218 (545)
T ss_pred             ------------------eehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe-eh-------hhc-Cchhhhccc
Confidence                              112346888899888999999988899999987 44433 32       223 568899999


Q ss_pred             cCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEEC
Q 014644          197 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDI  275 (421)
Q Consensus       197 p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~  275 (421)
                      |.. .+|++++..|.++.-|+..|+..    ..+..             ..+.+..++-+|-+-.+-.|.. |+|.+|..
T Consensus       219 PyH-fLL~~~~~~G~L~Y~DVS~GklV----a~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  219 PYH-FLLVAASEAGFLKYQDVSTGKLV----ASIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             chh-heeeecccCCceEEEeechhhhh----HHHHc-------------cCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            998 88999999999999999998765    22222             1567888888898888888866 99999999


Q ss_pred             CCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceee
Q 014644          276 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  355 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  355 (421)
                      .. .+++..+..|.+++               .++++.++|+|++|.+.|..++|||++...+ ..++.. ..+...+.+
T Consensus       281 ~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~  342 (545)
T KOG1272|consen  281 NS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSL  342 (545)
T ss_pred             CC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeeccccc-cceeec-CCCcccccc
Confidence            86 88888888888876               7999999999999999999999999998743 333322 344555555


Q ss_pred             ecCCcccccccceeeeecccCcccCCC-------CCccccccccccCeEEEEEccCCCeEEEecCCce
Q 014644          356 QAAPRARRSSLSNLTRGLYRQAHENSS-------SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSL  416 (421)
Q Consensus       356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~-------~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~  416 (421)
                      +..        .+||.+..+-..||..       .+.......+.+.|.++.|.|-..+|-+|-.+++
T Consensus       343 Sqk--------glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  343 SQK--------GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ccc--------cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            543        3678777777799911       1222222344568999999999988888876553

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.8e-16  Score=138.06  Aligned_cols=251  Identities=12%  Similarity=0.081  Sum_probs=171.4

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCC---C-ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI---S-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~---~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      ..|...|+.++|.|....|+++ .|++|++|++..   . ...+..+    .++.+|.++|.|++..+++ ..+++|+.|
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi----~tfraH~gPVl~v~v~~n~-~~~ysgg~D  365 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPI----LTFRAHEGPVLCVVVPSNG-EHCYSGGID  365 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeee----EEEecccCceEEEEecCCc-eEEEeeccC
Confidence            6789999999999999999999 999999999932   1 1111111    3678999999999999999 999999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      |+|+.|++....      ..++. .+.......+.+|.+.++.+++|+....|++++. |++++|+... ..+ ..+...
T Consensus       366 g~I~~w~~p~n~------dp~ds-~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~-~~~-~~f~~~  436 (577)
T KOG0642|consen  366 GTIRCWNLPPNQ------DPDDS-YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE-ESP-CTFGEP  436 (577)
T ss_pred             ceeeeeccCCCC------Ccccc-cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC-cCc-cccCCc
Confidence            999999887322      12222 2223344457888999999999999888988864 9999999864 444 333332


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEEecC-------CCCccceeeecCCc
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAG-------KNENRKPILQAAPR  360 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  360 (421)
                      ......             .++.+.... .++++...-+.--+.++... .....+...       ...+..+...|.  
T Consensus       437 ~e~g~P-------------lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~--  500 (577)
T KOG0642|consen  437 KEHGYP-------------LSVDRTSSRPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPT--  500 (577)
T ss_pred             cccCCc-------------ceEeeccchhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCC--
Confidence            222111             345544322 12222222233334444443 112222211       123445555555  


Q ss_pred             ccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          361 ARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                           ....+++..|+. +++  ..+..+.....|...|+++++-|.|.+|++++ ++.+++|+
T Consensus       501 -----~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  501 -----ADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             -----CCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence                 347788888888 888  55677777788999999999999999999999 56688885

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=1.2e-14  Score=139.60  Aligned_cols=231  Identities=15%  Similarity=0.194  Sum_probs=151.4

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|+..|+.++-+ ++.+.+|+|||.||+||+|+...-....       +                              
T Consensus      1045 ~Ehs~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~------------------------------ 1086 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-------G------------------------------ 1086 (1431)
T ss_pred             hhccccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-------c------------------------------
Confidence            3678888888884 4557999999999999999987632000       0                              


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~  187 (421)
                                      ..++..++ .--..++.++...+.++.+|.+ .||.|++.+++.. ............+.....
T Consensus      1087 ----------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g 1149 (1431)
T KOG1240|consen 1087 ----------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG 1149 (1431)
T ss_pred             ----------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCC
Confidence                            00333444 3345678889999999999999 9999999999841 111111111112223223


Q ss_pred             CCeeEEEEecCCCC-eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          188 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ..|..-+|...... .++.+..-+.|..||+++....      |.. ..        .-..+.|++++.+|.+.+++.|+
T Consensus      1150 ~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~------w~l-k~--------~~~hG~vTSi~idp~~~WlviGt 1214 (1431)
T KOG1240|consen 1150 VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA------WRL-KN--------QLRHGLVTSIVIDPWCNWLVIGT 1214 (1431)
T ss_pred             ceEEeecccccccceeEEEEEeccceEEecchhhhhH------Hhh-hc--------CccccceeEEEecCCceEEEEec
Confidence            33344455444324 7888888899999999986422      221 00        11147899999999999999998


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---CCCEEEEe-e-CCCeEEEEecCCCCCce
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATG-S-YSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~~-s-~dg~i~iwd~~~~~~~~  340 (421)
                      . |.+.+||++- +.++..+..+...              ++..+..+|   .....+++ + ..+.|.+|++.++ ...
T Consensus      1215 s~G~l~lWDLRF-~~~i~sw~~P~~~--------------~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~ 1278 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRF-RVPILSWEHPARA--------------PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQ 1278 (1431)
T ss_pred             CCceEEEEEeec-CceeecccCcccC--------------CcceEEeeccCCCCceEEEecccCCCceeeeecccC-cce
Confidence            7 9999999995 8877776543321              114555554   33454444 4 4788999999998 555


Q ss_pred             eEEecC
Q 014644          341 ITVEAG  346 (421)
Q Consensus       341 ~~~~~~  346 (421)
                      .++...
T Consensus      1279 ~vl~~s 1284 (1431)
T KOG1240|consen 1279 TVLWAS 1284 (1431)
T ss_pred             EEEEcC
Confidence            555444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=1.4e-15  Score=123.87  Aligned_cols=215  Identities=13%  Similarity=0.126  Sum_probs=153.5

Q ss_pred             CCCCcceEEEeecCCCC-----EEEEEcCCcEEEEeCCCCceeeeee-ecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          135 HAHDFNINSISNNSDCE-----TFVSADDLRINLWNLEISDQCFNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~-----~l~s~~d~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      ..|..+++.+.|.|+..     +||++.| .+|+|.+...+..+... -+...+-..+.+++++..|+.-.+++|.++|-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            47999999999999763     5555544 79999987323222211 01111224567899999999988899999999


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEe-cCCeEEEEECCCCCcceeEEe
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSR-DYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      |.+..|||+..+...  .++            ..+-.|..+|..++|...+.-+ |+. .||.+|+||++.-....-.++
T Consensus       172 DTTCTiWdie~~~~~--~vk------------TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSG--TVK------------TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             cCeEEEEEEeecccc--cee------------eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence            999999999986220  001            1123458899999999976644 444 459999999986222222333


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCC-CeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  364 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (421)
                      .... ...+            ..++|++ |-+++|+-..| ..|.|.|++........|++|.+.|+.++|.|..     
T Consensus       238 ~p~~-~~pL------------lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-----  299 (364)
T KOG0290|consen  238 DPSP-STPL------------LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-----  299 (364)
T ss_pred             CCCC-CCcc------------eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-----
Confidence            3321 1111            5889998 46778876554 5799999998878899999999999999999983     


Q ss_pred             ccceeeeecccCc-ccCCCC
Q 014644          365 SLSNLTRGLYRQA-HENSSS  383 (421)
Q Consensus       365 ~~~~l~~g~~d~~-~iw~~~  383 (421)
                       ...|+++++|.. -+|+..
T Consensus       300 -~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  300 -SSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             -CceeeecCCcceEEEEecc
Confidence             247999999999 999544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.2e-15  Score=134.40  Aligned_cols=237  Identities=15%  Similarity=0.146  Sum_probs=155.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||++-|++++|  +.+|.+|++||.|-.+.|||.-..+                                         
T Consensus        47 ~GH~GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~K-----------------------------------------   83 (758)
T KOG1310|consen   47 TGHTGCVNCLEW--NADGELLASGSDDTRLIVWDPFEYK-----------------------------------------   83 (758)
T ss_pred             ccccceecceee--cCCCCEEeecCCcceEEeecchhcc-----------------------------------------
Confidence            489999999999  8999999999999999999976533                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceee---eeeecCCCCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCF---NIVDMKPSNM  183 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~---~~~~~~~~~~  183 (421)
                                         ++..+..+|...|+++.|-|  +.+++++| .|..|+++|+....+--   ... ....-.
T Consensus        84 -------------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~-~~~~~~  143 (758)
T KOG1310|consen   84 -------------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGME-ETTRCW  143 (758)
T ss_pred             -------------------eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCcc-chhhhh
Confidence                               12222379999999999988  46678888 99999999997311100   000 000122


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch----hhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----RILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      .-|...|.-++-.|++++.+.+++.||+|+-+|++....+....    .....           ...--...++.++|..
T Consensus       144 ~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-----------~~~lielk~ltisp~r  212 (758)
T KOG1310|consen  144 SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-----------NPQLIELKCLTISPSR  212 (758)
T ss_pred             hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh-----------chhhheeeeeeecCCC
Confidence            55888899999999999999999999999999999855442111    00010           0011356789999964


Q ss_pred             -CEEEEec-CCeEEEEECCCCCcc-----------------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE
Q 014644          260 -QHLLSRD-YMNLKLWDIRMDSTP-----------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  320 (421)
Q Consensus       260 -~~l~~~~-~~~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~  320 (421)
                       .+|+.|+ +.-.++||.+...+.                 +..+.... .  ......-...+...+-+.|+|+|.-|+
T Consensus       213 p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-l--kn~~gn~~~~~~~~t~vtfnpNGtElL  289 (758)
T KOG1310|consen  213 PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-L--KNSQGNLDRYITCCTYVTFNPNGTELL  289 (758)
T ss_pred             CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-c--cCcccccccceeeeEEEEECCCCcEEE
Confidence             4666765 488999995431111                 11111000 0  000000011111235679999998877


Q ss_pred             EeeCCCeEEEEecCCCCCceeEE
Q 014644          321 TGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       321 ~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      ..-..-.|+++|+..++.....+
T Consensus       290 vs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  290 VSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             EeeCCeEEEEEeecCCCCceeec
Confidence            76666789999999875444433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=132.15  Aligned_cols=181  Identities=16%  Similarity=0.254  Sum_probs=139.4

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|..+|.+-+|  +++|.-|++++.||.|++|.-...                                           
T Consensus       102 AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsGM-------------------------------------------  136 (737)
T KOG1524|consen  102 AHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSRSGM-------------------------------------------  136 (737)
T ss_pred             hhhhhhhhccc--CCCCceeeeecCCceEEEEeccch-------------------------------------------
Confidence            58889999999  899999999999999999985431                                           


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                        ...++ .....+|+|++|.|+...++.+..+.+.+=.+..+.+.+        ..+.|.+-|
T Consensus       137 ------------------LRStl-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGii  189 (737)
T KOG1524|consen  137 ------------------LRSTV-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLV  189 (737)
T ss_pred             ------------------HHHHH-hhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEE
Confidence                              11112 345678999999999999998866677776666444444        347899999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeE
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  270 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i  270 (421)
                      .++.|+|.. .++++|+.|-..++||-....       .|..           ..|+.+|++++|.|+ +.++.++.+++
T Consensus       190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-------Lf~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~  249 (737)
T KOG1524|consen  190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-------LFTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTA  249 (737)
T ss_pred             EEeecCccc-cceeecCCceeEEeecccCcc-------cccC-----------Chhccceeeeeeccc-cceeeeeeeee
Confidence            999999998 999999999999999976532       2222           234779999999999 77777776777


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  330 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i  330 (421)
                      ++=..+.            +.               ++.++||+||..++.|...|.+.+
T Consensus       250 R~~~p~~------------GS---------------ifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  250 RFSSPRV------------GS---------------IFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eecCCCc------------cc---------------eEEEEEcCCCceeeccccCceEEE
Confidence            7322221            11               168999999999999999888765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=4.9e-15  Score=122.36  Aligned_cols=244  Identities=11%  Similarity=0.082  Sum_probs=168.5

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .++|+|.+|  +++...+|++...+.|.||......+                                           
T Consensus        10 ~~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------   44 (361)
T KOG1523|consen   10 LEPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------   44 (361)
T ss_pred             cCceeeeee--cCCCceEEeccCCceEEEEEecCCCC-------------------------------------------
Confidence            478999999  89999999999999999999776431                                           


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                            |        +...++ ..|...|+.+.|+|..+.|+++ .|..-++|....++.-..++     .+..+....+
T Consensus        45 ------w--------~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt  104 (361)
T KOG1523|consen   45 ------W--------EPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAAT  104 (361)
T ss_pred             ------c--------eeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEecccee
Confidence                  1        444556 8899999999999999999999 99999999995344333332     3456788999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i  270 (421)
                      ++.|+|.+ +.|++|+....|.+|-+....-.--..++-             +-+.+.|.+++|+|++-+|++|+ |+..
T Consensus       105 ~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhik-------------kPirStv~sldWhpnnVLlaaGs~D~k~  170 (361)
T KOG1523|consen  105 CVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIK-------------KPIRSTVTSLDWHPNNVLLAAGSTDGKC  170 (361)
T ss_pred             eEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhC-------------CccccceeeeeccCCcceecccccCcce
Confidence            99999999 999999999999999887643210000111             11257899999999999999886 5888


Q ss_pred             EEEECCCCCcceeEEeeccCccc-----ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRP-----KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      ++|..-- + .+..-........     .++..+. ..--.+.++.|+|+|..|+-.+.|..+.+=|.....+....+..
T Consensus       171 rVfSayI-K-~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~  247 (361)
T KOG1523|consen  171 RVFSAYI-K-GVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT  247 (361)
T ss_pred             eEEEEee-e-ccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence            8886521 0 0000000110000     0100010 00113479999999999999999999999987765433444333


Q ss_pred             CCCCccceeeecC
Q 014644          346 GKNENRKPILQAA  358 (421)
Q Consensus       346 ~~~~~~~~~~~~~  358 (421)
                      ..-|..++.|-..
T Consensus       248 ~~lP~ls~~~ise  260 (361)
T KOG1523|consen  248 AQLPLLSVSWISE  260 (361)
T ss_pred             ccCCceeeEeecC
Confidence            3355555555433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=7.2e-15  Score=136.02  Aligned_cols=267  Identities=13%  Similarity=0.116  Sum_probs=176.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      +.-...|.+++|+| .+..+||.|+.+|.|-+||+..+.....                                     
T Consensus       239 ~~~~s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------------------------------  280 (555)
T KOG1587|consen  239 LESPSEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------------------------------  280 (555)
T ss_pred             EecCCceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCC-------------------------------------
Confidence            34467899999974 5688999999999999999988652110                                     


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC----
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----  182 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~----  182 (421)
                                        .++......|...|..+.|..+.  .-++++ .||.|..|+++.-.............    
T Consensus       281 ------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~  342 (555)
T KOG1587|consen  281 ------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQ  342 (555)
T ss_pred             ------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccc
Confidence                              00011115788999999996543  447777 99999999887322222221111000    


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      -......+++++|.|..+..++.|+..|.|.--+....+....  ..+..       ...+..|.++|..+.++|-+..+
T Consensus       343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccce
Confidence            0112346889999999889999999999987644333221110  11121       11245568999999999976654


Q ss_pred             -EEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCc-
Q 014644          263 -LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAG-  339 (421)
Q Consensus       263 -~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~-  339 (421)
                       ++++|.+++||.......++..+..+...+               ++++|||.. ..++++..||.|.|||+...... 
T Consensus       414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             eeeeccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence             455678999999873356665555544432               799999974 56778888999999999865322 


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  383 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~  383 (421)
                      ......+......+.+++.  ++     .|+.|...|. .++...
T Consensus       479 v~s~~~~~~~l~~~~~s~~--g~-----~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  479 VLSQKVCSPALTRVRWSPN--GK-----LLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccccccccccceeecCCC--Cc-----EEEEecCCCcEEEEEcC
Confidence            3333334445556666665  44     8999999998 777443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=3.2e-13  Score=111.69  Aligned_cols=180  Identities=15%  Similarity=0.185  Sum_probs=130.9

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      .+.+||....   .++.++  .-..+|.++.+.+  ..|+..-.++|+||....+-+..+.++..    . ....+.+++
T Consensus        76 kviIWDD~k~---~~i~el--~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~  143 (346)
T KOG2111|consen   76 KVIIWDDLKE---RCIIEL--SFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLC  143 (346)
T ss_pred             eEEEEecccC---cEEEEE--EeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeec
Confidence            6789996655   777776  5677899999974  56777778899999987555566555321    1 112234433


Q ss_pred             EecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce-EE
Q 014644          195 FHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN-LK  271 (421)
Q Consensus       195 ~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~-i~  271 (421)
                      -+.+. .+||.-+ .-|.|+|-|+......               ...+...|.+.|.+++.+-+|.++|+++. |+ ||
T Consensus       144 ~~~~k-~~LafPg~k~GqvQi~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  144 PTSNK-SLLAFPGFKTGQVQIVDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             CCCCc-eEEEcCCCccceEEEEEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence            33332 4555544 5589999998864321               11224556999999999999999999987 65 89


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |||..+ ++.+..++......             ++.+++|||++.+|++.|+.|+++|+.++..
T Consensus       208 IFdt~~-g~~l~E~RRG~d~A-------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  208 IFDTED-GTLLQELRRGVDRA-------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCC-CcEeeeeecCCchh-------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999997 88888887554432             3479999999999999999999999999865

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.1e-15  Score=132.76  Aligned_cols=304  Identities=14%  Similarity=0.128  Sum_probs=197.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|.+-|+.|.|  +..|..|++||.|..|.+||+..+..+......|...|.-..|.+..+.-          .+...  
T Consensus       140 ~H~GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~----------ti~~~--  205 (559)
T KOG1334|consen  140 KHKGCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR----------TIVTS--  205 (559)
T ss_pred             CCCCccceeee--cccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc----------Cceec--
Confidence            69999999999  78899999999999999999988774433333343434322222221111          01110  


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      ..++.+++-.+......+..+.+ ..|.++|.-++.-|+.. -|.++ .|+.+.-.|++... ....+-.+    ..+..
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr----~~~~~  279 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCR----EADEK  279 (559)
T ss_pred             cccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeeccCC-ccceeeee----ccCCc
Confidence            11334444433222111222333 68999999999999754 45555 99999999988432 22111111    22222


Q ss_pred             ---CeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc--ccchhhhccccccCCCcccccccccceeEEEEcCCCC-EE
Q 014644          189 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  262 (421)
Q Consensus       189 ---~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  262 (421)
                         ....++.+|...+.+++++.|..+++||.+.-...  ...+..+-.       ..........|++++|+.++. +|
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-------~hl~~d~~v~ITgl~Ysh~~sElL  352 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-------HHLVEDDPVNITGLVYSHDGSELL  352 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-------ccccccCcccceeEEecCCcccee
Confidence               56788999988679999999999999998864321  000111111       111122345799999996654 55


Q ss_pred             EEecCCeEEEEECCC-CC----------cceeE-EeeccCcccccccccCCCcceeeeEE-EEcCCCCEEEEeeCCCeEE
Q 014644          263 LSRDYMNLKLWDIRM-DS----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLR  329 (421)
Q Consensus       263 ~~~~~~~i~i~d~~~-~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sp~~~~l~~~s~dg~i~  329 (421)
                      ++-.+-.|+++.-.. .+          ..++. +++|.....          |   -.+ -|-|...|+++||.-|.|.
T Consensus       353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccCccceEEecCccceEE
Confidence            555667899995432 12          22333 677766432          1   344 4678899999999999999


Q ss_pred             EEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          330 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       330 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      ||+-.++ +.+..+.+...-|+++.-.|.       .+.||+.+-|.. +||+.
T Consensus       420 iW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  420 IWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             EEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence            9998887 778888888888899988888       569999999999 99943

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=122.57  Aligned_cols=289  Identities=8%  Similarity=0.049  Sum_probs=170.0

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .|...|+++.|   ....+|.+|..-|.|++|++++..-.+.....+...+..+                  ..++.++.
T Consensus        12 p~~~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~l------------------q~~p~d~l   70 (323)
T KOG0322|consen   12 PHSSSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNL------------------QSIPNDSL   70 (323)
T ss_pred             cccchheehhh---ccchhhhcccccceEEEEEeecCccchhhhhhccceeece------------------eecCCcch
Confidence            78899999999   4455699999999999999998763222221122211111                  11111122


Q ss_pred             cc---ccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-----CC---EEEEE-cCCc--EEEEeCCCCceeeeee
Q 014644          111 TE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CE---TFVSA-DDLR--INLWNLEISDQCFNIV  176 (421)
Q Consensus       111 ~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~---~l~s~-~d~~--i~lwd~~~~~~~~~~~  176 (421)
                      ++   +..+.+|++.      --... ..|+-.++++-|.+-     ++   .++.. ..+.  +.+-|.. ....+.+.
T Consensus        71 ~tqgRd~~L~lw~ia------~s~~i-~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g-~~tqv~i~  142 (323)
T KOG0322|consen   71 DTQGRDPLLILWTIA------YSAFI-SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG-DTTQVQIA  142 (323)
T ss_pred             hhcCCCceEEEEEcc------CcceE-EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC-ccceeEcc
Confidence            11   2244555431      11122 345555666666431     11   11211 1111  1111211 00111111


Q ss_pred             ecCCCCCCccCCCeeEEEEecC-CC-CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE
Q 014644          177 DMKPSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  254 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p~-~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  254 (421)
                         +..-.+..+.+.+..+.-+ +. -++++|.++|.+.+||+..+...      ++. ............|..+|.++.
T Consensus       143 ---dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------~~~-~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  143 ---DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------IQL-PQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             ---CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------ecc-ccccccccchhhccCcceeee
Confidence               1112334566777765433 21 24567779999999999987432      222 122222333566789999999


Q ss_pred             EcCCCCEEEEecC-CeEEEEECCCC-Cc-cee-EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644          255 FANDGQHLLSRDY-MNLKLWDIRMD-ST-PVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  330 (421)
Q Consensus       255 ~s~~~~~l~~~~~-~~i~i~d~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i  330 (421)
                      +.+.-..=++|+. ..+..|.++-. +. ++. .......               ++..+.+-||++.+|+++.|+.|||
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp---------------Gv~gvrIRpD~KIlATAGWD~RiRV  277 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP---------------GVSGVRIRPDGKILATAGWDHRIRV  277 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccceEEecCC---------------CccceEEccCCcEEeecccCCcEEE
Confidence            9875433344443 67888887642 11 111 1111111               1257889999999999999999999


Q ss_pred             EecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          331 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      |..++. +...++..|.+.+++++|+|+       .+.+|.++.|+. .+|+
T Consensus       278 yswrtl-~pLAVLkyHsagvn~vAfspd-------~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  278 YSWRTL-NPLAVLKYHSAGVNAVAFSPD-------CELMAAASKDARISLWK  321 (323)
T ss_pred             EEeccC-CchhhhhhhhcceeEEEeCCC-------CchhhhccCCceEEeee
Confidence            999998 778899999999999999999       448999999999 8883

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2e-15  Score=133.16  Aligned_cols=183  Identities=17%  Similarity=0.223  Sum_probs=128.3

Q ss_pred             eeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-CCeEEEEEc
Q 014644          131 KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSS  208 (421)
Q Consensus       131 ~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~  208 (421)
                      +.+ .||++.|++|.|+.+|.+|++| +|-.+.|||.- ..+++..+.      .+|...|.++.|-|.. ..++++|..
T Consensus        44 ~eL-~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~------TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   44 AEL-TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSIS------TGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhh-ccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeee------cccccceeEEeeeccCCCeEEEeccC
Confidence            445 8999999999999999999999 99999999998 555555553      7899999999999953 368889999


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      |..|+++|+...+...     .+.  -.......+..|...|..++-.|++ ..+.++++ |+|+.+|++.+..+-....
T Consensus       116 Dk~i~lfdl~~~~~~~-----~d~--~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~  188 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGG-----MDH--GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED  188 (758)
T ss_pred             cceEEEEecccccccc-----ccc--CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence            9999999998532110     000  0001111235568899999999998 45556665 9999999985222222111


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~  334 (421)
                      .+...+     .+..+. ....++.++|. ..+|++|+.|-..++||.+
T Consensus       189 ~~~~l~-----ny~~~l-ielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  189 CPSILV-----NYNPQL-IELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ccHHHH-----Hhchhh-heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            111111     111111 12357899995 6679999999999999964

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=6.5e-14  Score=130.40  Aligned_cols=266  Identities=14%  Similarity=0.058  Sum_probs=164.5

Q ss_pred             cccccEEEEEEEEcCCC-CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccccc--ccceeeccCCCCceeeee
Q 014644           31 EIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA--EKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~-~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~  107 (421)
                      +|..+++.+.+.+++.. .++.+++.||+|++||...+++.+....+.+.  ..+.+.+.  +..........+...+..
T Consensus        55 ~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v--~~~~~~~~~a~~s~~~~~s~~~~~~~~~  132 (792)
T KOG1963|consen   55 DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV--HALVYKPAQADISANVYVSVEDYSILTT  132 (792)
T ss_pred             cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce--eEEEechhHhCccceeEeecccceeeee
Confidence            68899999999765554 68889999999999999999865555433322  21111100  000000000011111111


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      .+.......+-..+.+.. ......+ .+|.. -.++..++.|++.+...+..+.+|+..+..+.....    ..-..|.
T Consensus       133 ~s~~~~~q~~~~~~~t~~-~~~~d~~-~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~----~~~~~Ht  205 (792)
T KOG1963|consen  133 FSKKLSKQSSRFVLATFD-SAKGDFL-KEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR----DITVHHT  205 (792)
T ss_pred             cccccccceeeeEeeecc-ccchhhh-hhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccc----hhhhhhc
Confidence            111111111111111110 0111112 33433 467888888888777777789999988433211111    1124577


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..+++.+++|++ ++++++..||.|.+|.--...........             +.-|..+|++++|+++|.+|++|+.
T Consensus       206 f~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~-------------lHWH~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  206 FNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTL-------------LHWHHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             ccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceE-------------EEecccccceeEEecCCceEeeccc
Confidence            779999999999 99999999999999963321111111122             3445789999999999999999987


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                       +.+-+|.+.+ ++ .+-+..-..++               ..+.++||+.+.+...+|+.|.+-.+.+.
T Consensus       272 E~VLv~Wq~~T-~~-kqfLPRLgs~I---------------~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  272 EGVLVLWQLET-GK-KQFLPRLGSPI---------------LHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             ceEEEEEeecC-CC-cccccccCCee---------------EEEEEcCCCCeEEEEecCceEEEEeccch
Confidence             9999999987 43 22222223332               78999999999999999999999987654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.6e-14  Score=120.04  Aligned_cols=259  Identities=14%  Similarity=0.102  Sum_probs=161.4

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      -.+..++|  ++.-..+|++..|-+|++||-.... .+......+..|.|++|-+-.+..++++.              .
T Consensus        99 ~dlr~~aW--hqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC--------------r  161 (445)
T KOG2139|consen   99 IDLRGVAW--HQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC--------------R  161 (445)
T ss_pred             cceeeEee--chhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee--------------c
Confidence            45778999  5666778999999999999977633 33333345566777777776666554443              2


Q ss_pred             cceeEEeecccc---------eeeeeeeec-CCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCC
Q 014644          114 MATKIANVGNSV---------HARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS  181 (421)
Q Consensus       114 ~~~~~~~~~~~~---------~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~  181 (421)
                      .-+-+|..+...         ...+.+.+. .+| ..|++++|++||..++++  .|..|.|||++ .++.....     
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-----  234 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-----  234 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-----
Confidence            234455443211         112222331 344 689999999999999996  89999999999 55554432     


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                        ....+.+.-+.|+||+ ..|.+++-|+..++|+..+.--.   .+-.-+              .+.|....|+|+|++
T Consensus       235 --~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~---erw~lg--------------sgrvqtacWspcGsf  294 (445)
T KOG2139|consen  235 --PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK---ERWILG--------------SGRVQTACWSPCGSF  294 (445)
T ss_pred             --ccCCCceeeEEEcCCC-CEEEEecccceeeeehhccccee---cceecc--------------CCceeeeeecCCCCE
Confidence              2334668889999999 99999999999999965432111   111112              458999999999999


Q ss_pred             EEEecCCeEEEEECCCCCcceeEEee-ccCcccccccccC-----CC--cceeeeEEEEcCCCCEEEEeeCCC-------
Q 014644          262 LLSRDYMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYN-----ND--SIFDKFECSVSGDGLHFATGSYSN-------  326 (421)
Q Consensus       262 l~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~--~~~~~~~~~~sp~~~~l~~~s~dg-------  326 (421)
                      |+....+.-++|.+.-.++....... ....+..+.++.+     +.  +--+..+++|.|.|.+||+.-..+       
T Consensus       295 LLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k  374 (445)
T KOG2139|consen  295 LLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK  374 (445)
T ss_pred             EEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence            88765566677766433332111100 0000000011100     00  000126899999999999765433       


Q ss_pred             -eEEEEecCCC
Q 014644          327 -LLRIFSHGVG  336 (421)
Q Consensus       327 -~i~iwd~~~~  336 (421)
                       .|.+||.+..
T Consensus       375 ~~i~~fdtr~s  385 (445)
T KOG2139|consen  375 LHISRFDTRKS  385 (445)
T ss_pred             hhhhhhccccc
Confidence             3666776644

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=8.4e-15  Score=125.37  Aligned_cols=200  Identities=18%  Similarity=0.202  Sum_probs=139.9

Q ss_pred             EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccce
Q 014644           37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  116 (421)
Q Consensus        37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  116 (421)
                      .+++|  +.++..+++++.||++|+|++.+..                                                
T Consensus       148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~------------------------------------------------  177 (398)
T KOG0771|consen  148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSML------------------------------------------------  177 (398)
T ss_pred             eEEEE--cCCCCEeeeccccceEEEEecCcch------------------------------------------------
Confidence            77888  7899999999999999999977643                                                


Q ss_pred             eEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE
Q 014644          117 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  195 (421)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  195 (421)
                                  .+... ..|..+|.+|.|+|||++|++- .| ..+||+++ .+..+...     +-.+.......+.|
T Consensus       178 ------------t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~-----t~~~k~~~~~~cRF  237 (398)
T KOG0771|consen  178 ------------TILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK-----TPFSKDEMFSSCRF  237 (398)
T ss_pred             ------------hhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc-----CCcccchhhhhcee
Confidence                        11112 5788999999999999999996 77 99999999 44333322     11223344566777


Q ss_pred             ecCC--CCeEEEEE--cCCeEEEEECCccccc--ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          196 HPIY--CNLLAYSS--SRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       196 ~p~~--~~~l~s~~--~d~~v~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      +-++  ..+.+.+.  .-+.|+.||+.....-  .+..+....              ...|++++.++||++++.|+. |
T Consensus       238 ~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--------------~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  238 SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--------------FKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--------------cCcceeEEEcCCCcEEEEeccCC
Confidence            7653  12222222  3466777776543210  000111111              357999999999999999987 9


Q ss_pred             eEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .|-|++..+ -+.++.. +.|...+               +.+.|+|+.+++++.+.|..+.+..+...
T Consensus       304 sVai~~~~~-lq~~~~vk~aH~~~V---------------T~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  304 SVAIYDAKS-LQRLQYVKEAHLGFV---------------TGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             cEEEEEece-eeeeEeehhhheeee---------------eeEEEcCCcCcccccccCCceeEEEEeec
Confidence            999999875 4443333 3455544               89999999999999999999988887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.6e-13  Score=127.36  Aligned_cols=170  Identities=15%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             eEEEeecCCCCEEEEE--cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-CeEEEE
Q 014644          141 INSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLV  215 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~~v~iw  215 (421)
                      +..++|+|||+.|+..  .++  .|.+||++ ++...+.        ..+...+....|+|+| +.|+..+.+ +...+|
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~l--------t~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQV--------TDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVY  314 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEc--------cCCCCCcCceEECCCC-CEEEEEeCCCCCceEE
Confidence            3457899999988864  444  58889997 4443332        2334567889999999 777766653 444454


Q ss_pred             --ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C---CeEEEEECCCCCcceeEEeecc
Q 014644          216 --DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       216 --d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                        |+..+...    + +..             .........|+|||++|+... .   ..|.+||+.+ ++. ..+....
T Consensus       315 ~~d~~~g~~~----~-lt~-------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~~-~~Lt~~~  374 (429)
T PRK03629        315 KVNINGGAPQ----R-ITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLTDTF  374 (429)
T ss_pred             EEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CCe-EEeCCCC
Confidence              66554321    1 111             123456788999999987642 2   4688899875 443 3333211


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe---EEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      . .               ....|+|||++|+..+.++.   ++++++..  .....+.+|.+.+...+|+|.
T Consensus       375 ~-~---------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        375 L-D---------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             C-C---------------CCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence            1 1               36789999999998887764   67777752  455667778888888888764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=4.3e-15  Score=127.12  Aligned_cols=176  Identities=16%  Similarity=0.102  Sum_probs=130.2

Q ss_pred             EEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          142 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      .+++|+++|..|+++ .||++|+|+........        ....|...|.++.|+||| ++|++.+.| ..+||+.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence            688999999999999 99999999965222222        235688999999999999 999999999 8999999998


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCC---CEEE-E-ecC-CeEEEEECCCCCc-----ceeEEeecc
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLL-S-RDY-MNLKLWDIRMDST-----PVATFKIHE  289 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~-~-~~~-~~i~i~d~~~~~~-----~~~~~~~~~  289 (421)
                      ...    .....           ...+.....+.|+.|+   .+.+ + ... +.|+.||+.....     ..+.+..++
T Consensus       218 ~~~----a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  218 AAL----ARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             chh----hhcCC-----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence            433    11110           1114456778888876   3333 3 233 7788877653211     111111222


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      .                +.+++.+++|++++.|+.||.|-|++..+-+.....-+.|...|+.+.|+|+
T Consensus       283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            1                2799999999999999999999999999886667777899999999999999

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=2.5e-14  Score=118.62  Aligned_cols=224  Identities=15%  Similarity=0.199  Sum_probs=129.7

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeE
Q 014644           39 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  118 (421)
Q Consensus        39 v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  118 (421)
                      .+|  +|+|+++|+.+.- .+.|-|.++-++..+..  .-..|.-+.|....-.++|...             ....+.+
T Consensus        14 c~f--Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~y-------------k~~~vqv   75 (447)
T KOG4497|consen   14 CSF--SPCGNYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAY-------------KDPKVQV   75 (447)
T ss_pred             eeE--CCCCCeeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeee-------------ccceEEE
Confidence            455  7999999999876 78888887765322111  0111222222222222222221             2346788


Q ss_pred             EeecccceeeeeeeecCCCCcceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644          119 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  196 (421)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  196 (421)
                      |++...   +---.+ .....++.+++|||||+.|+ ++ .+-.|.+|.+. +.....+        +--...+..++|+
T Consensus        76 wsl~Qp---ew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~~--------~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   76 WSLVQP---EWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYLL--------PHPKTNVKGYAFH  142 (447)
T ss_pred             EEeecc---eeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEEe--------cccccCceeEEEC
Confidence            888765   444444 56677899999999996555 56 89999999998 3433322        1123456889999


Q ss_pred             cCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644          197 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  276 (421)
Q Consensus       197 p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~  276 (421)
                      |+| ++.+.++.-.....+++..-+.. ...+.+             +-..-..+.+.|+|||..|+.        ||--
T Consensus       143 ~dg-~f~ai~sRrDCkdyv~i~~c~~W-~ll~~f-------------~~dT~DltgieWsPdg~~laV--------wd~~  199 (447)
T KOG4497|consen  143 PDG-QFCAILSRRDCKDYVQISSCKAW-ILLKEF-------------KLDTIDLTGIEWSPDGNWLAV--------WDNV  199 (447)
T ss_pred             CCC-ceeeeeecccHHHHHHHHhhHHH-HHHHhc-------------CCCcccccCceECCCCcEEEE--------ecch
Confidence            999 88777764321111111110000 000111             111345688999999976654        4422


Q ss_pred             CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          277 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      - .-.+..+...-                ++..++|+|.+++|+.|+.|+.+|+.+-
T Consensus       200 L-eykv~aYe~~l----------------G~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  200 L-EYKVYAYERGL----------------GLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             h-hheeeeeeecc----------------ceeEEEeccccceEEeeccchhhhhhce
Confidence            1 11111111111                1247899999999999999999988653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-14  Score=120.40  Aligned_cols=293  Identities=12%  Similarity=0.093  Sum_probs=171.9

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+-|.+|.|  ...|.+||||..+|.|.++.-+...   ......+..+++-+                           
T Consensus        25 adiis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF---------------------------   75 (433)
T KOG1354|consen   25 ADIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF---------------------------   75 (433)
T ss_pred             hcceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc---------------------------
Confidence            456899999  6889999999999999999744321   11111111111100                           


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC---EEEEEcCCcEEEEeCCCCceee-------------
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSADDLRINLWNLEISDQCF-------------  173 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~~d~~i~lwd~~~~~~~~-------------  173 (421)
                                        .-++.+  .-...|..+.|.+++.   +|+++.|.+|++|.+...+...             
T Consensus        76 ------------------DYLkSl--eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~  135 (433)
T KOG1354|consen   76 ------------------DYLKSL--EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGT  135 (433)
T ss_pred             ------------------chhhhh--hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCc
Confidence                              111222  2345688899988654   4555699999999986322211             


Q ss_pred             ----eeeecCC-----------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCC
Q 014644          174 ----NIVDMKP-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  238 (421)
Q Consensus       174 ----~~~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~  238 (421)
                          +...+.+           .--..|+..|.++.++.|. ..++++ .|-.|.+|++.-....   ..+.+.   .|.
T Consensus       136 ~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~s---FnIVDI---KP~  207 (433)
T KOG1354|consen  136 ITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQS---FNIVDI---KPA  207 (433)
T ss_pred             cceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCc---eeEEEc---ccc
Confidence                0000011           0124688899999999998 777654 5778999998753211   122221   111


Q ss_pred             CcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcce---eEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644          239 SKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPV---ATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  313 (421)
Q Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  313 (421)
                      .   +.....-|++..|+|... .++-.+. |+|++.|++...-+.   +.+..+..+..   .-+-.+.|-.|..+.|+
T Consensus       208 n---mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~---rsffseiIsSISDvKFs  281 (433)
T KOG1354|consen  208 N---MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS---RSFFSEIISSISDVKFS  281 (433)
T ss_pred             C---HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc---hhhHHHHhhhhhceEEc
Confidence            1   112245688999999643 4444444 999999998522221   11222222211   11112223345789999


Q ss_pred             CCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccc
Q 014644          314 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLS  393 (421)
Q Consensus       314 p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~  393 (421)
                      ++|+||++-.. -+|++||+........+++.|..--..+.-.-.                       .        +.-
T Consensus       282 ~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE-----------------------n--------D~I  329 (433)
T KOG1354|consen  282 HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE-----------------------N--------DAI  329 (433)
T ss_pred             cCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh-----------------------c--------cch
Confidence            99999987764 799999998776777777766432111110000                       0        001


Q ss_pred             cCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          394 SKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       394 ~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      -.-..++|+.++..+++|+ .+..++|+
T Consensus       330 fdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  330 FDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             hheeEEEEcCCcceEecccccceEEEec
Confidence            1223678999999999998 55567765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.1e-13  Score=128.48  Aligned_cols=230  Identities=12%  Similarity=0.118  Sum_probs=142.6

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      .+.++|.+..   .. +.+ ..+...+.+.+|+|||+.|+..    .+..|.+|++. +++...+        ......+
T Consensus       180 ~l~~~d~dg~---~~-~~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l--------~~~~~~~  245 (429)
T PRK03629        180 ELRVSDYDGY---NQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQV--------ASFPRHN  245 (429)
T ss_pred             eEEEEcCCCC---CC-EEe-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEc--------cCCCCCc
Confidence            4555555433   22 333 3456789999999999998863    24578999997 4433322        1122334


Q ss_pred             eEEEEecCCCCeEEEE-EcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          191 TSAEFHPIYCNLLAYS-SSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~-~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..+.|+||| +.|+.. +.+|  .|.+||+.++...    +....              ...+....|+|||+.|+..++
T Consensus       246 ~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~  306 (429)
T PRK03629        246 GAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSD  306 (429)
T ss_pred             CCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeC
Confidence            568999999 766654 4454  5888999876432    22222              345678999999998876643


Q ss_pred             --CeEEEE--ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCce
Q 014644          268 --MNLKLW--DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGG  340 (421)
Q Consensus       268 --~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~  340 (421)
                        +...||  |+.. ++ ...+.......               ....|+|||++|+..+.+   ..|++||+.++.  .
T Consensus       307 ~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~  367 (429)
T PRK03629        307 QAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V  367 (429)
T ss_pred             CCCCceEEEEECCC-CC-eEEeecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCC--e
Confidence              444444  6543 33 33333222211               468999999998876543   358889998763  2


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC--CC-CCccccccccccCeEEEEEccC
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SS-SGHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~~-~~~~~~~~~~~~~v~~~~~spd  404 (421)
                      ..+... .......|+|+  |+     .|+..+.++.  .++  .. ++....+..+...+...+|+|-
T Consensus       368 ~~Lt~~-~~~~~p~~SpD--G~-----~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        368 QVLTDT-FLDETPSIAPN--GT-----MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEeCCC-CCCCCceECCC--CC-----EEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            233322 23456788888  44     6777766665  344  33 3344445567778889999983

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.4e-13  Score=109.59  Aligned_cols=215  Identities=13%  Similarity=0.145  Sum_probs=144.1

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..+|+.+|+.++|  .  ..+|++|+ ||.|+=|...+..-.                                      
T Consensus        58 eqahdgpiy~~~f--~--d~~Lls~g-dG~V~gw~W~E~~es--------------------------------------   94 (325)
T KOG0649|consen   58 EQAHDGPIYYLAF--H--DDFLLSGG-DGLVYGWEWNEEEES--------------------------------------   94 (325)
T ss_pred             ccccCCCeeeeee--e--hhheeecc-CceEEEeeehhhhhh--------------------------------------
Confidence            3689999999999  3  34555555 699999998764300                                      


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                          ..+-++|.....     .++- .-.--.|+++...|...-++.+ .|+.++-||++ .+...+.+       ++|+
T Consensus        95 ----~~~K~lwe~~~P-----~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~-------rGHt  156 (325)
T KOG0649|consen   95 ----LATKRLWEVKIP-----MQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREY-------RGHT  156 (325)
T ss_pred             ----ccchhhhhhcCc-----cccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEE-------cCCc
Confidence                001123433222     1110 1122468899999876666666 99999999999 66666654       8999


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccc-ccceeEEEEcCCCCEEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~  266 (421)
                      +.|.++.--... ..+++|+.||++|+||.++++..    +.++. ...+   +.+.-| ...|.+++-  +..++++|.
T Consensus       157 DYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~-yk~~---~~lRp~~g~wigala~--~edWlvCGg  225 (325)
T KOG0649|consen  157 DYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEP-YKNP---NLLRPDWGKWIGALAV--NEDWLVCGG  225 (325)
T ss_pred             ceeeeeeecccC-cceeecCCCccEEEEecccccee----EEecc-ccCh---hhcCcccCceeEEEec--cCceEEecC
Confidence            999999874443 57999999999999999997654    33332 1111   111111 234555554  477999988


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ...+.+|.++. .++...+......                ..+.|.  ...++++++.+.|.-|.+.
T Consensus       226 Gp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  226 GPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             CCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence            78899999996 7877777554432                356664  4467788888888888876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.3e-12  Score=110.29  Aligned_cols=190  Identities=14%  Similarity=0.156  Sum_probs=130.7

Q ss_pred             eEEEeecCCCCEEEE-E--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          141 INSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       141 v~~l~~~~~~~~l~s-~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      |-.+-|+  ..++|. +  +-+.+++.+.+. +..+.-+        .....|.++.++.+   .|+.+=.+ .|.|||+
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk-~~~ICe~--------~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI  113 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKK-KTTICEI--------FFPTSILAVRMNRK---RLVVCLEE-SIYIYDI  113 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEccc-CceEEEE--------ecCCceEEEEEccc---eEEEEEcc-cEEEEec
Confidence            4445555  344444 3  345789999883 3333322        24567999999975   34444433 3999999


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--cC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ++.+..    +.++.          .+.+...+.++.+++.+.+++.-  .. |.|.+||+.+ -+++..+..|.+.+  
T Consensus       114 ~~MklL----hTI~t----------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l--  176 (391)
T KOG2110|consen  114 KDMKLL----HTIET----------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL--  176 (391)
T ss_pred             ccceee----hhhhc----------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce--
Confidence            997755    44433          01123456677777777799863  23 9999999986 88899999999876  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCe-EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                   .+++|+|+|.+||++|+.|+ ||++.+.++ +....++.               |.           
T Consensus       177 -------------Aalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRR---------------G~-----------  216 (391)
T KOG2110|consen  177 -------------AALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRR---------------GT-----------  216 (391)
T ss_pred             -------------eEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeC---------------Cc-----------
Confidence                         78999999999999999997 789999887 33322221               11           


Q ss_pred             ccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          374 YRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       374 ~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                                        .-..|.+++|+||+++|++.+ .+.+-+|.
T Consensus       217 ------------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  217 ------------------YPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             ------------------eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence                              024577889999999888777 56677774

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-13  Score=126.54  Aligned_cols=217  Identities=14%  Similarity=0.110  Sum_probs=131.9

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d  209 (421)
                      ..+...+.+.+|+|||+.|+.. . +  ..|.+||+. +++...+        ....+.+.+..|+||| +.|+ +.+.+
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~-~g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~  261 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA-TGRRRVV--------ANFKGSNSAPAWSPDG-RTLAVALSRD  261 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEEccC
Confidence            4567789999999999998875 3 3  359999998 4443332        1223445688999999 6665 56778


Q ss_pred             CeEEEEEC--CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE
Q 014644          210 GFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 ~~v~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~  285 (421)
                      +...+|.+  ..+..     +.+..             +........|+|||+.|+..++  +...||.+...+.....+
T Consensus       262 g~~~Iy~~d~~~~~~-----~~lt~-------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l  323 (427)
T PRK02889        262 GNSQIYTVNADGSGL-----RRLTQ-------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV  323 (427)
T ss_pred             CCceEEEEECCCCCc-----EECCC-------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence            87666654  33321     11111             1334566789999998886543  556666554323223333


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  362 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (421)
                      .......               ...+|+|||++|+..+.++   .|++||+.++. .. .+... .......|+|+  ++
T Consensus       324 t~~g~~~---------------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~-~lt~~-~~~~~p~~spd--g~  383 (427)
T PRK02889        324 TFTGSYN---------------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-VT-ALTDT-TRDESPSFAPN--GR  383 (427)
T ss_pred             ecCCCCc---------------CceEECCCCCEEEEEEccCCcEEEEEEECCCCC-eE-EccCC-CCccCceECCC--CC
Confidence            2221111               3578999999998777654   69999998763 22 23222 33467889988  44


Q ss_pred             ccccceeeeecccCc--ccC--CCCCc-cccccccccCeEEEEEccC
Q 014644          363 RSSLSNLTRGLYRQA--HEN--SSSGH-HELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       363 ~~~~~~l~~g~~d~~--~iw--~~~~~-~~~~~~~~~~v~~~~~spd  404 (421)
                           .|+....++.  .++  +..+. ......+.+.+...+|+|-
T Consensus       384 -----~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        384 -----YILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             -----EEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence                 5555554443  455  22222 2223334566777888874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.60  E-value=5.9e-14  Score=112.96  Aligned_cols=168  Identities=12%  Similarity=0.163  Sum_probs=121.5

Q ss_pred             CCCcceEEEeecC-CCC--EEEEE-cCCcEEEEeCCCCceeeeeeecCC--CCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          136 AHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       136 ~h~~~v~~l~~~~-~~~--~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      +..+.+.+..+.. ++.  +|++| .+|.+.+||+.+....+..-...+  .....|..+|.++.+.+.- ..=++++.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence            3456677777533 333  44557 999999999985433222110000  1235789999999999875 566778888


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      ..+..|.+......-+....             ..-.+..+..+.+-||++.+|+++. +.||+|..++ ..++..++-|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyH  292 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYH  292 (323)
T ss_pred             ccceeeeeccccCcccccce-------------EEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhh
Confidence            88899987653211000000             1112457899999999999999875 9999999997 9999999989


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      ...+               .+++|+|+...+|+++.|+.|.+|++
T Consensus       293 sagv---------------n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGV---------------NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence            8765               89999999999999999999999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.2e-13  Score=127.04  Aligned_cols=229  Identities=15%  Similarity=0.111  Sum_probs=140.3

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      .+.+||.+.    ...+.+ ..+...+.+.+|+|||+.|+.. .   +..|.+||+. .++...+        ....+..
T Consensus       185 ~l~i~D~~g----~~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~-~g~~~~l--------~~~~g~~  250 (433)
T PRK04922        185 ALQVADSDG----YNPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA-TGQRELV--------ASFRGIN  250 (433)
T ss_pred             EEEEECCCC----CCceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC-CCCEEEe--------ccCCCCc
Confidence            566677643    333444 4667789999999999998875 3   3469999997 4433322        2223345


Q ss_pred             eEEEEecCCCCeE-EEEEcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          191 TSAEFHPIYCNLL-AYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       191 ~~~~~~p~~~~~l-~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      .++.|+|+| +.| ++.+.++  .|.+||+.++...     .+..             +.......+|+|||+.|+..++
T Consensus       251 ~~~~~SpDG-~~l~~~~s~~g~~~Iy~~d~~~g~~~-----~lt~-------------~~~~~~~~~~spDG~~l~f~sd  311 (433)
T PRK04922        251 GAPSFSPDG-RRLALTLSRDGNPEIYVMDLGSRQLT-----RLTN-------------HFGIDTEPTWAPDGKSIYFTSD  311 (433)
T ss_pred             cCceECCCC-CEEEEEEeCCCCceEEEEECCCCCeE-----ECcc-------------CCCCccceEECCCCCEEEEEEC
Confidence            578999999 655 4555555  5999999876532     1222             1234467899999999887653


Q ss_pred             --Ce--EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCce
Q 014644          268 --MN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG  340 (421)
Q Consensus       268 --~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~  340 (421)
                        +.  |+++|+.. ++ ...+.......               ...+|+|||++|+..+.++   .|++||+.++. ..
T Consensus       312 ~~g~~~iy~~dl~~-g~-~~~lt~~g~~~---------------~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~  373 (433)
T PRK04922        312 RGGRPQIYRVAASG-GS-AERLTFQGNYN---------------ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VR  373 (433)
T ss_pred             CCCCceEEEEECCC-CC-eEEeecCCCCc---------------cCEEECCCCCEEEEEECCCCceeEEEEECCCCC-eE
Confidence              44  66667654 33 33332222111               3689999999998765443   69999998763 22


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeeccc-Cc-ccC--CC-CCccccccccccCeEEEEEcc
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR-QA-HEN--SS-SGHHELSYNLSSKLLHLAWHP  403 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-~~-~iw--~~-~~~~~~~~~~~~~v~~~~~sp  403 (421)
                       .+. +........|+|+  ++     .++..+.+ +. .||  +. +........+...+...+|+|
T Consensus       374 -~Lt-~~~~~~~p~~spd--G~-----~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        374 -TLT-PGSLDESPSFAPN--GS-----MVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             -ECC-CCCCCCCceECCC--CC-----EEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence             332 2224556788888  44     55554443 33 566  33 223333333455677788887

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1e-13  Score=113.49  Aligned_cols=147  Identities=20%  Similarity=0.288  Sum_probs=102.8

Q ss_pred             EEeecCCCCEEEEE-c---C-------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE--EEcC
Q 014644          143 SISNNSDCETFVSA-D---D-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSR  209 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~---d-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--~~~d  209 (421)
                      .+.|+|+|++|+.- .   |       +...||.++..+.....+.     +. ..++|.+++|+|++ ..|+.  |..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~-~~~~I~~~~WsP~g-~~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LK-KEGPIHDVAWSPNG-NEFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----cc-CCCceEEEEECcCC-CEEEEEEccCC
Confidence            57899999988863 2   1       2356666643344444331     11 34569999999999 66544  3467


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---C-CeEEEEECCCCCcceeEE
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~-~~i~i~d~~~~~~~~~~~  285 (421)
                      ..|.+||++... .    ..+.               ...++.+.|+|+|++|+.++   . |.|.+||.++ .+.+...
T Consensus        83 ~~v~lyd~~~~~-i----~~~~---------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~  141 (194)
T PF08662_consen   83 AKVTLYDVKGKK-I----FSFG---------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF  141 (194)
T ss_pred             cccEEEcCcccE-e----Eeec---------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence            899999997321 1    2221               34678999999999999863   2 7899999985 6666555


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------CCeEEEEecC
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG  334 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------dg~i~iwd~~  334 (421)
                      .... .                ..++|+|+|+++++++.      |+.++||+..
T Consensus       142 ~~~~-~----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  142 EHSD-A----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ccCc-E----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            3222 1                68999999999998764      7889999986

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.1e-13  Score=123.61  Aligned_cols=173  Identities=13%  Similarity=0.097  Sum_probs=106.5

Q ss_pred             ceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEE
Q 014644          140 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd  216 (421)
                      .+.+.+|+|||+.|+. . .++...||.++......+.       +..+.....+..|+||| +.|+..+ .++...+|.
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEE
Confidence            3457899999998875 4 7777777765422222222       23344556778999999 7776655 346666775


Q ss_pred             CC--cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeeccC
Q 014644          217 MR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       217 ~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      +.  .+...    ++...              .......+|+|||++|+..+.    ..|.+||+.+ ++.. .+.....
T Consensus       313 ~~~~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~~-~lt~~~~  372 (427)
T PRK02889        313 MPASGGAAQ----RVTFT--------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQVT-ALTDTTR  372 (427)
T ss_pred             EECCCCceE----EEecC--------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCeE-EccCCCC
Confidence            53  32211    11100              122346789999999986543    2699999975 4433 3322111


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                       .               ....|+|||++|+..+.++   .+++.++.  +.....+..+.+.+...+|+|.
T Consensus       373 -~---------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~--g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        373 -D---------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD--GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             -c---------------cCceECCCCCEEEEEEecCCCEEEEEEECC--CCceEEeecCCCCCCCCccCCC
Confidence             1               4689999999988777543   35555553  3455556666677777777764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.5e-12  Score=121.63  Aligned_cols=215  Identities=13%  Similarity=0.064  Sum_probs=132.4

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d  209 (421)
                      ..|...+.+.+|+|||+.|+.. .   +..|.+||+. +++...+        ..+.+.+.+.+|+|+| +.| ++.+.+
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~  267 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQRELV--------GNFPGMTFAPRFSPDG-RKVVMSLSQG  267 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEEe--------ecCCCcccCcEECCCC-CEEEEEEecC
Confidence            5677889999999999988874 2   4689999998 4433322        3345567788999999 655 455656


Q ss_pred             Ce--EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644          210 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       210 ~~--v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~  283 (421)
                      +.  |.+||+.++...    + +..             +........|+|||+.|+..++    ..|+++|+.. ++ ..
T Consensus       268 g~~~Iy~~d~~~~~~~----~-Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~-~~  327 (435)
T PRK05137        268 GNTDIYTMDLRSGTTT----R-LTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN-PR  327 (435)
T ss_pred             CCceEEEEECCCCceE----E-ccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC-eE
Confidence            54  777788775432    1 211             1344567899999999886643    3688888763 33 33


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      .+.......               ....|+|||++|+..+.+   ..|.+||+..+ . ...+.. ...+....|+|+  
T Consensus       328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~-~~~~~~p~~spD--  387 (435)
T PRK05137        328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTS-GFLVEGPTWAPN--  387 (435)
T ss_pred             EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccC-CCCCCCCeECCC--
Confidence            443222211               467899999999877653   36888887654 2 223322 234677889988  


Q ss_pred             ccccccceeeeeccc-C----cccC--CCCCccccccccccCeEEEEEccC
Q 014644          361 ARRSSLSNLTRGLYR-Q----AHEN--SSSGHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d-~----~~iw--~~~~~~~~~~~~~~~v~~~~~spd  404 (421)
                      ++     .|+....+ +    ..+|  +..+...........+...+|+|-
T Consensus       388 G~-----~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        388 GR-----VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             CC-----EEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence            44     44443322 1    2455  222221222223345667788774

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1e-12  Score=122.58  Aligned_cols=169  Identities=15%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             eEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCe--EE
Q 014644          141 INSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF--VR  213 (421)
Q Consensus       141 v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~--v~  213 (421)
                      ..+++|+|||+.|+. . .++  .|++||+. +++..+.        ..+......++|+|+| +.|+.++ .++.  |.
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~l--------t~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTRL--------TNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIY  319 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEEC--------ccCCCCccceEECCCC-CEEEEEECCCCCceEE
Confidence            446799999998764 3 444  59999998 4443322        3344455678999999 7777666 4444  55


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C---CeEEEEECCCCCcceeEEeecc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      ++|+..+...    ++...              ......++|+|||++|+..+ +   ..|.+||+.+ ++.. .+... 
T Consensus       320 ~~dl~~g~~~----~lt~~--------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~-  378 (433)
T PRK04922        320 RVAASGGSAE----RLTFQ--------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPG-  378 (433)
T ss_pred             EEECCCCCeE----EeecC--------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCC-
Confidence            6666554321    11111              12345689999999998653 2   3699999875 4433 33221 


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA  357 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (421)
                      ...               ....|+|||++|+..+.+   +.|+++++..  .....+..+.+.+...+|+|
T Consensus       379 ~~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        379 SLD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence            111               367999999998877653   4577788753  34455555555666666654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=6.7e-13  Score=110.31  Aligned_cols=244  Identities=14%  Similarity=0.153  Sum_probs=147.5

Q ss_pred             cccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc-
Q 014644           33 EEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-  110 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-  110 (421)
                      ...+.+++|  +|+|+ .|.++.-|-.|.+|.+.+.+...+...+              ..+...++++++++.+..+- 
T Consensus        91 ~agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   91 QAGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             CCcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeeecc
Confidence            567899999  79985 5556677889999999887644333322              23344555666666555443 


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      +...-+.+......   +.++.+ .-.+-..+.+.|+|||..||.=   -+-.|..|..                    .
T Consensus       155 DCkdyv~i~~c~~W---~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~--------------------~  210 (447)
T KOG4497|consen  155 DCKDYVQISSCKAW---ILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------------G  210 (447)
T ss_pred             cHHHHHHHHhhHHH---HHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee--------------------c
Confidence            11111222111111   334444 4455677899999999887752   2333332222                    2


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchh--------------------------------hhccc--
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR--------------------------------ILRDA--  233 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------------------------------~~~~h--  233 (421)
                      -.+..++|+|.+ ++|+.|+.|+.+|+.+--+-+...+..+                                .++.|  
T Consensus       211 lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~  289 (447)
T KOG4497|consen  211 LGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW  289 (447)
T ss_pred             cceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence            347788999998 9999999999998765433211000000                                00000  


Q ss_pred             ---------cccCCCcc------cccccccceeEEEEcCCCCEEEEecC---CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          234 ---------AESHGSKS------FFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       234 ---------~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                               ...+....      -+.+....+..++|++|..++++.++   +.+-+||++. .+....+ ....++   
T Consensus       290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL-iQk~pi---  364 (447)
T KOG4497|consen  290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL-IQKHPI---  364 (447)
T ss_pred             ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh-hhccce---
Confidence                     00000000      12233456788999999999999865   7899999985 4433333 233333   


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                                  ..+.|+|....|+.+.....+++|...
T Consensus       365 ------------raf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  365 ------------RAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             ------------eEEEeCCCCceEEEEcCCceEEEEcCC
Confidence                        689999998888888777889999765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1e-12  Score=107.64  Aligned_cols=116  Identities=13%  Similarity=0.243  Sum_probs=86.0

Q ss_pred             CCcceEEEeecCCCCEEEE--E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---CC
Q 014644          137 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG  210 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---d~  210 (421)
                      ..++|.+++|+|+|+.++.  | .++.|.+||++  .+.+..+         +...+..+.|+|+| ++|++++.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~---------~~~~~n~i~wsP~G-~~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF---------GTQPRNTISWSPDG-RFLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee---------cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence            4456999999999998765  5 67899999997  3333332         34567889999999 88888874   46


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-------CCeEEEEECCCCCccee
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA  283 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~i~i~d~~~~~~~~~  283 (421)
                      .|.+||+++.+..    ...+               ...+..++|+|||++++++.       +..++||+..  |+.+.
T Consensus       126 ~l~~wd~~~~~~i----~~~~---------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~  184 (194)
T PF08662_consen  126 DLEFWDVRKKKKI----STFE---------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY  184 (194)
T ss_pred             EEEEEECCCCEEe----eccc---------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence            7999999975533    2222               23578999999999999752       3678999985  66554


Q ss_pred             EE
Q 014644          284 TF  285 (421)
Q Consensus       284 ~~  285 (421)
                      ..
T Consensus       185 ~~  186 (194)
T PF08662_consen  185 KK  186 (194)
T ss_pred             ec
Confidence            43

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=6.8e-12  Score=103.97  Aligned_cols=138  Identities=15%  Similarity=0.190  Sum_probs=95.4

Q ss_pred             ceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCe
Q 014644          115 ATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v  190 (421)
                      .+.+|......  +.++.+. ......+-++.-..+..+||. | .-|.|+|-|+..... .-.+       ...|...|
T Consensus       114 ~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s~I  184 (346)
T KOG2111|consen  114 KIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDSDI  184 (346)
T ss_pred             eEEEEEcCCCh--hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------EEcccCce
Confidence            45666655322  2222221 122333433333334445555 6 789999999983332 1122       37899999


Q ss_pred             eEEEEecCCCCeEEEEEcCCe-EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          191 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      .|++.+-+| .++|++|..|+ |||||..++....+..+-.+               ...|.+++|||++.+|+++++ |
T Consensus       185 acv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  185 ACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------RADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             eEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------hheEEEEEeCCCccEEEEEcCCC
Confidence            999999999 99999999987 69999999886633222111               367999999999999999999 9


Q ss_pred             eEEEEECCC
Q 014644          269 NLKLWDIRM  277 (421)
Q Consensus       269 ~i~i~d~~~  277 (421)
                      +++||.++.
T Consensus       249 TlHiF~l~~  257 (346)
T KOG2111|consen  249 TLHIFSLRD  257 (346)
T ss_pred             eEEEEEeec
Confidence            999999974

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=2.2e-13  Score=120.12  Aligned_cols=165  Identities=11%  Similarity=0.196  Sum_probs=109.2

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      +..|++++|.| -+...++.+-.+|.+.++|..-..-       ...                    +.-..+..+..  
T Consensus       219 ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~-------~t~--------------------p~~~~~k~~~~--  268 (636)
T KOG2394|consen  219 KSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCG-------ATA--------------------PSYQALKDGDQ--  268 (636)
T ss_pred             ccceEEEEEEe-CCCceEEEEEecCceEEeecccccc-------CCC--------------------CcccccCCCCe--
Confidence            47899999985 4566788888999999998632110       000                    00000000000  


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                       ..+..|.....  ..++..+ .--.+.|+..+|+|||++||+- .||.+||+|.. ..+++.+       ++..-+...
T Consensus       269 -f~i~t~ksk~~--rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGLL  336 (636)
T KOG2394|consen  269 -FAILTSKSKKT--RNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGLL  336 (636)
T ss_pred             -eEEeeeecccc--CCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccceE
Confidence             00111110000  0122222 1223489999999999999997 99999999998 4444432       355567899


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                      |++|+||| ++|++|++|..|.||.+...+++    .  .+           .+|++.|+.++|.|
T Consensus       337 CvcWSPDG-KyIvtGGEDDLVtVwSf~erRVV----A--RG-----------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  337 CVCWSPDG-KYIVTGGEDDLVTVWSFEERRVV----A--RG-----------QGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEcCCc-cEEEecCCcceEEEEEeccceEE----E--ec-----------cccccceeeEeecc
Confidence            99999999 99999999999999999987643    2  22           35699999999997

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1e-12  Score=110.53  Aligned_cols=167  Identities=13%  Similarity=0.244  Sum_probs=112.9

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      +..++.++|++.-..++++ .|-.|++|+-..  .+...+.      ...+..|.+++|-|.+...|+.|+..| |.+|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~g-IciW~  168 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWS  168 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceec------chhhcceeEEEeccCCcceeeeeecce-eEEEE
Confidence            3457888999866667777 888999999873  3332221      234567999999999867788877766 88997


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE-eeccCccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF-KIHEHLRP  293 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~-~~~~~~~~  293 (421)
                      ...........+....|   +......++| .+|+++.|.+||..+++++-  ..|.|||..+ +..+... .+..+.  
T Consensus       169 ~s~tln~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~--  241 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF--  241 (445)
T ss_pred             cCccccccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce--
Confidence            65432111111111111   0011112333 78999999999999998853  8899999987 4443322 222221  


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                                    .-+.|||||.+|.+++-|+..++|+..
T Consensus       242 --------------slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  242 --------------SLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             --------------eeEEEcCCCCEEEEecccceeeeehhc
Confidence                          468999999999999999999999654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=2.1e-12  Score=109.80  Aligned_cols=230  Identities=14%  Similarity=0.134  Sum_probs=165.8

Q ss_pred             CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc----eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-
Q 014644          136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-  209 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-  209 (421)
                      ..+..|..++.. | ..|++| .+|.+.+|..+.+.    .+..        +. -...+..+.-+|..+.++++|+.. 
T Consensus       103 l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~--------la-~g~g~~~~r~~~~~p~Iva~GGke~  171 (412)
T KOG3881|consen  103 LGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIK--------LA-TGPGLYDVRQTDTDPYIVATGGKEN  171 (412)
T ss_pred             cccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccccccee--------ee-cCCceeeeccCCCCCceEecCchhc
Confidence            445566666554 3 467777 99999999987322    1111        11 225567777778776788889988 


Q ss_pred             -CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          210 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 -~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                       ..+.+||+.+..      ++|.. ..-+...-- -.-.-.++++.|-+.  ...|++++. +.+++||.+...+++..+
T Consensus       172 ~n~lkiwdle~~~------qiw~a-KNvpnD~L~-LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f  243 (412)
T KOG3881|consen  172 INELKIWDLEQSK------QIWSA-KNVPNDRLG-LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF  243 (412)
T ss_pred             ccceeeeecccce------eeeec-cCCCCcccc-ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe
Confidence             899999998864      44443 111110000 001246778999887  788999987 999999999878899988


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      ...+.++               .++...|+++.|++|..-|.+..+|++.+......+.+-.+.++.+...|.       
T Consensus       244 d~~E~~i---------------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~-------  301 (412)
T KOG3881|consen  244 DFLENPI---------------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT-------  301 (412)
T ss_pred             ccccCcc---------------eeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC-------
Confidence            8777655               789999999999999999999999999985556669999999999999988       


Q ss_pred             cceeeeecccCc-ccCCCCC-ccccccccccCeEEEEEccCCC
Q 014644          366 LSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTN  406 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw~~~~-~~~~~~~~~~~v~~~~~spd~~  406 (421)
                      ..+|++++-|+. +|++... .+....-....++.+-+.++-+
T Consensus       302 ~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  302 HPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             CceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence            339999999999 9994443 3333334456667777766543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.53  E-value=1.1e-14  Score=134.56  Aligned_cols=238  Identities=16%  Similarity=0.176  Sum_probs=165.1

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +.++.+ .+|.+.|.|..|...|.++++| +|..++||.++ +..+..       .+.||.+.|+.++.+.+. .+++++
T Consensus       181 k~ikrL-lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lA-------s~rGhs~ditdlavs~~n-~~iaaa  250 (1113)
T KOG0644|consen  181 KNIKRL-LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLA-------SCRGHSGDITDLAVSSNN-TMIAAA  250 (1113)
T ss_pred             HHHHHH-HhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhc-------cCCCCccccchhccchhh-hhhhhc
Confidence            344555 7999999999999999999999 99999999988 566664       449999999999999987 899999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|..|++|.++.+..+    .++.+|             .+.|++++|+|-.   .++.+|++++||.+-  .+.....
T Consensus       251 S~D~vIrvWrl~~~~pv----svLrgh-------------tgavtaiafsP~~---sss~dgt~~~wd~r~--~~~~y~p  308 (1113)
T KOG0644|consen  251 SNDKVIRVWRLPDGAPV----SVLRGH-------------TGAVTAIAFSPRA---SSSDDGTCRIWDARL--EPRIYVP  308 (1113)
T ss_pred             ccCceEEEEecCCCchH----HHHhcc-------------ccceeeeccCccc---cCCCCCceEeccccc--cccccCC
Confidence            99999999999997655    666664             8999999999965   334459999999872  1111110


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      .+..       ..+.+.+   -++.|..++.-.++|+.|+.-..|.+........          .+.|.... +-  ..
T Consensus       309 rp~~-------~~~~~~~---~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~----------~lif~t~s-sd--~~  365 (1113)
T KOG0644|consen  309 RPLK-------FTEKDLV---DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN----------LLIFVTRS-SD--LS  365 (1113)
T ss_pred             CCCC-------cccccce---eeeeccccccccccccCCcccccchhhHhhhhcc----------ceEEEecc-cc--cc
Confidence            0000       0011111   4667777788889999999999888764311100          00110000 00  00


Q ss_pred             ceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          367 SNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      ....+.-.+-. .+|  ..+.+.....+|...+..|.+||-++.++...  ++...||+
T Consensus       366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence            12233333333 677  33445566778999999999999999988433  77899996

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=7.4e-12  Score=111.58  Aligned_cols=289  Identities=15%  Similarity=0.149  Sum_probs=191.0

Q ss_pred             cccccccccccEEEEEEEEcCCCCe-EEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~-l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      +-+..++|...-+.|..  +|||.| +|||..--.|++||+..-.++.-...                            
T Consensus        43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl----------------------------   92 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHL----------------------------   92 (703)
T ss_pred             HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecc----------------------------
Confidence            44556789999999999  799886 55667788999999987553322110                            


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                                       ....|.-.-.+.|-..++.- .|++|.+...-  +....+-      
T Consensus        93 ---------------------------------Dae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~R------  131 (703)
T KOG2321|consen   93 ---------------------------------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRTR------  131 (703)
T ss_pred             ---------------------------------cccceeEEEeccchhhheEeecCceeeehhhc--Ceeeeee------
Confidence                                             01122222334444444444 77777665433  3222211      


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                         -...-..++++.-. .-|++++....|+-+++..|+..    ..+..             ..+.++.+.+++-..+|
T Consensus       132 ---IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hgLl  190 (703)
T KOG2321|consen  132 ---IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHGLL  190 (703)
T ss_pred             ---cCcCCccccccCCC-ccEEEeecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccceE
Confidence               11223455665444 33555566667888999998765    33333             14689999999999999


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      ++|+. |.|..||.+. ...+.++..... +...   ...+....|+++.|+.+|-.+++|+.+|.+.|||+++..+...
T Consensus       191 a~Gt~~g~VEfwDpR~-ksrv~~l~~~~~-v~s~---pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRD-KSRVGTLDAASS-VNSH---PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             EecccCceEEEecchh-hhhheeeecccc-cCCC---ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence            99986 9999999986 666666654433 1111   1112222458999999999999999999999999999866666


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccCCCeEEEecCCc
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS  415 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~  415 (421)
                      .-++..-++..+.|.+....     ..+++....-.+|| ...+.....+.....+.++|+-|++-++.++.++.
T Consensus       266 kdh~~e~pi~~l~~~~~~~q-----~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  266 KDHGYELPIKKLDWQDTDQQ-----NKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             cccCCccceeeecccccCCC-----ceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence            66677778888888766222     25666555555999 33344444455566799999999999988887543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.7e-12  Score=118.98  Aligned_cols=215  Identities=12%  Similarity=0.031  Sum_probs=134.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeC---CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~---d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      .|.+.+...+|  +|||+.|+..+.   +..|.+||+.+++.+.+                                   
T Consensus       199 ~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-----------------------------------  241 (435)
T PRK05137        199 DGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-----------------------------------  241 (435)
T ss_pred             cCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-----------------------------------
Confidence            46678899999  788888887764   45788888877642221                                   


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCc--EEEEeCCCCceeeeeeecCCCCC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                                 ..+.+.+...+|+|||+.|+. . .++.  |.+||+. ++...++        
T Consensus       242 ---------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~L--------  285 (435)
T PRK05137        242 ---------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTRL--------  285 (435)
T ss_pred             ---------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEEc--------
Confidence                                       223345667899999998764 3 5554  7777887 3433322        


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEc-CC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ..+........|+||| +.|+..+. +|  .|.++|+..+...    ++...              ...+....|+|||+
T Consensus       286 t~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~  346 (435)
T PRK05137        286 TDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGD  346 (435)
T ss_pred             cCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCC
Confidence            3455566788999999 77776663 33  6777787654321    11111              23456788999999


Q ss_pred             EEEEec-C---CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC------CeEEE
Q 014644          261 HLLSRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRI  330 (421)
Q Consensus       261 ~l~~~~-~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d------g~i~i  330 (421)
                      +|+... +   ..|.+||+.. + ....+.... ..               ..+.|+|||++|+..+.+      ..+++
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt~~~-~~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~  408 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDG-S-GERILTSGF-LV---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYT  408 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCC-C-ceEeccCCC-CC---------------CCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence            998653 2   3678888753 3 233332211 11               478999999998765542      35788


Q ss_pred             EecCCCCCceeEEecCCCCccceeeecC
Q 014644          331 FSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      +|+..+ . ...+. ....+...+|+|.
T Consensus       409 ~dl~g~-~-~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        409 VDLTGR-N-EREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             EECCCC-c-eEEcc-CCCCccCcccCCC
Confidence            887654 2 23333 2334555666553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=121.36  Aligned_cols=191  Identities=13%  Similarity=0.055  Sum_probs=131.0

Q ss_pred             cCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc
Q 014644          147 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  225 (421)
Q Consensus       147 ~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~  225 (421)
                      .|.+--|+.| .-|.|.+.|.. ..+..+.+..   ...-.+..|+++.|-|.+...++.+-.+|.+.+||.........
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~-~~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPI-NFEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecch-hhHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            3467778888 88999998876 2222221110   00112467999999998878888888999999998643110000


Q ss_pred             -------chhhhcccc----ccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          226 -------SARILRDAA----ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       226 -------~~~~~~~h~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                             .-..+..|.    ....+......-.+.|+..+|+|||++||+.+. |.+||||..+ .+++..++..-+.  
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGG--  334 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGG--  334 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccc--
Confidence                   000111100    000111112223458999999999999998876 9999999986 5555444332222  


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                                   ..+++|||||+||++|++|.-|.||.+... +.+..-++|+++|..++|.|-
T Consensus       335 -------------LLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  335 -------------LLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             -------------eEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeeccc
Confidence                         279999999999999999999999999876 777888999999999999863

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=7.1e-10  Score=100.20  Aligned_cols=251  Identities=10%  Similarity=0.063  Sum_probs=137.4

Q ss_pred             EEEEeCC----CcEEEeec--CCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc--cccceeEEee
Q 014644           50 FILSTND----KTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT--ENMATKIANV  121 (421)
Q Consensus        50 l~t~s~d----~~v~lwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~  121 (421)
                      ++.|+..    +.|.+|++  +++++..+...........+++            +++..++......  ..+.+..+.+
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~------------~~~~~~LY~~~e~~~~~g~v~~~~i   69 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAV------------SPDGRRLYVVNEGSGDSGGVSSYRI   69 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-------------TTSSEEEEEETTSSTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEE------------EeCCCEEEEEEccccCCCCEEEEEE
Confidence            3455555    78999888  5555554443222221122223            3333333333332  2334445544


Q ss_pred             ccc-ceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecC------CCCCCccCCCeeE
Q 014644          122 GNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITS  192 (421)
Q Consensus       122 ~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~  192 (421)
                      ... ...+.+... .........++++|++++|+++  .+|+|.++++...+.+.......      +...........+
T Consensus        70 ~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~  148 (345)
T PF10282_consen   70 DPDTGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ  148 (345)
T ss_dssp             ETTTTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred             CCCcceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence            432 222333333 2223345578999999999997  69999999998655444332110      0001122355678


Q ss_pred             EEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce
Q 014644          193 AEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN  269 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~  269 (421)
                      +.|+|++ +++++.. ....|.+|++............+..            ........++|+|+++++....+  +.
T Consensus       149 v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  149 VVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNT  215 (345)
T ss_dssp             EEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             EEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence            9999999 7776655 4468999999775411000011111            01345788999999999877644  89


Q ss_pred             EEEEECCCC-Ccc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCC
Q 014644          270 LKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV  335 (421)
Q Consensus       270 i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~  335 (421)
                      |.++++... +..  +.........       +...  .....++++|||++|++.. .++.|.+|+++.
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~-------~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEG-------FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETT-------SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEEeecccCCceeEEEEeeecccc-------cccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            999999731 322  1111111000       0000  0115899999999988766 467899999953

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=1e-09  Score=93.29  Aligned_cols=233  Identities=12%  Similarity=0.147  Sum_probs=150.4

Q ss_pred             ccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeC---CCcEEEeecCC--ceeEEeeecCCCCCccccccccccc
Q 014644           17 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEK   91 (421)
Q Consensus        17 ~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~---d~~v~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~   91 (421)
                      +.....+...+..+.+.+..+-++|  +++.++|.++-.   +|.|--|.++.  |.+..+...                
T Consensus        23 ld~~~g~l~~~~~v~~~~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~----------------   84 (346)
T COG2706          23 LDTKTGELSLLQLVAELGNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ----------------   84 (346)
T ss_pred             EeCcccccchhhhccccCCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------------
Confidence            3344555666777778888999999  788888887754   46777777664  333322210                


Q ss_pred             ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCC
Q 014644           92 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS  169 (421)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~  169 (421)
                                                              .. .++  +-..+++++++++|+++  ..|.|.++-++..
T Consensus        85 ----------------------------------------~~-~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d  121 (346)
T COG2706          85 ----------------------------------------TL-PGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD  121 (346)
T ss_pred             ----------------------------------------cc-CCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence                                                    01 222  22678899999999997  7899999999865


Q ss_pred             ceeeeeeecCCCCCCccCCC----------eeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCC
Q 014644          170 DQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHG  238 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~  238 (421)
                      +.+...+++     ..|.+.          +-+..+.|++ ++|++.. .-..|.+|++..+.+.......+..      
T Consensus       122 G~l~~~v~~-----~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~------  189 (346)
T COG2706         122 GSLQPVVQV-----VKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP------  189 (346)
T ss_pred             Cccccceee-----eecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC------
Confidence            555443321     123222          7788999999 8888776 2356999999977654222222221      


Q ss_pred             CcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC
Q 014644          239 SKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  316 (421)
Q Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  316 (421)
                              .....-|.|+|++++...-.+  ++|.+|........+..++......    .-|..+.  +...+..+|||
T Consensus       190 --------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP----~dF~g~~--~~aaIhis~dG  255 (346)
T COG2706         190 --------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP----EDFTGTN--WAAAIHISPDG  255 (346)
T ss_pred             --------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc----cccCCCC--ceeEEEECCCC
Confidence                    356788999999998877654  8999999976333343333222111    0011000  12578999999


Q ss_pred             CEEEEeeC-CCeEEEEecCCC
Q 014644          317 LHFATGSY-SNLLRIFSHGVG  336 (421)
Q Consensus       317 ~~l~~~s~-dg~i~iwd~~~~  336 (421)
                      ++|+++.. ...|.++.+...
T Consensus       256 rFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         256 RFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             CEEEEecCCCCeEEEEEEcCC
Confidence            99987764 347888887765

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.3e-12  Score=114.04  Aligned_cols=296  Identities=10%  Similarity=0.017  Sum_probs=204.5

Q ss_pred             cccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEe
Q 014644           89 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWN  165 (421)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd  165 (421)
                      ..+.+..+.++..+..+.+|+-  +..+.+|+....   .....+..+|...|..-.|-|  +.+.|+++ .||.+++=.
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSD--D~~vv~WdW~~~---~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSD--DLQVVVWDWVSG---SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             CCCccceeeecccCceeeccCc--cceEEeehhhcc---CcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            3456777788888888888876  567889998776   665666689999998888877  45567776 999999988


Q ss_pred             CCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccc
Q 014644          166 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  245 (421)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (421)
                      +...+....+.     .+..|.++|.-++.-|+.+..|++++.|+.+.-+|++.+.......  -..   ...      .
T Consensus       216 i~~t~~~e~t~-----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~---~~~------~  279 (559)
T KOG1334|consen  216 ILETGYVENTK-----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CRE---ADE------K  279 (559)
T ss_pred             eccccceecce-----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eec---cCC------c
Confidence            76555444332     4577999999999999998999999999999999999875432111  000   000      0


Q ss_pred             cccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCc-----ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644          246 IIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDST-----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  318 (421)
Q Consensus       246 ~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  318 (421)
                      ..-....++..|-.. .++++.. ..+++||.+...+     ++..+..+.-        .+ +....|++++|+.++.-
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl--------~~-d~~v~ITgl~Ysh~~sE  350 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL--------VE-DDPVNITGLVYSHDGSE  350 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc--------cc-cCcccceeEEecCCccc
Confidence            012567889999665 5666654 8899999875211     1222322211        11 33335689999987776


Q ss_pred             EEEeeCCCeEEEEecCCCC------------CceeEEecCCCC--ccceeeecCCcccccccceeeeecccCc-ccC--C
Q 014644          319 FATGSYSNLLRIFSHGVGS------------AGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S  381 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~  381 (421)
                      |.+.-.|-.|+++.-..+.            ....++.+|...  |..+-|-..+      ..++++|++=|. -||  .
T Consensus       351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr------sEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR------SEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc------cceEEecCccceEEEEecc
Confidence            7667778889999543321            123447788754  6666665432      347888888787 899  3


Q ss_pred             CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          382 SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       382 ~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .++++....+-..-|+||.-||--++||+.+ +-.|.||.
T Consensus       425 t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  425 TGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             hhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            4445544555555899999999999999999 66699995

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=4e-11  Score=112.05  Aligned_cols=188  Identities=15%  Similarity=0.110  Sum_probs=118.7

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cC---CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d  209 (421)
                      ..+...+...+|+|||++|+.+ .+   ..|++||+. .++....        ..+...+.+++|+|++ +.|+ +.+.+
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~-~g~~~~~--------~~~~~~~~~~~~spDg-~~l~~~~~~~  255 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA-TGQREKV--------ASFPGMNGAPAFSPDG-SKLAVSLSKD  255 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEe--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence            3556678899999999999875 32   479999998 3433222        2234556778999999 6555 44444


Q ss_pred             C--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644          210 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       210 ~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~  283 (421)
                      +  .|.+||+.++...    .+ ..             +........|+|||+.|+..++    ..|+++|+.. ++ ..
T Consensus       256 ~~~~i~~~d~~~~~~~----~l-~~-------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~  315 (417)
T TIGR02800       256 GNPDIYVMDLDGKQLT----RL-TN-------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VR  315 (417)
T ss_pred             CCccEEEEECCCCCEE----EC-CC-------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EE
Confidence            4  5888898775422    11 11             1223456789999998876543    3677788764 43 33


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      .+..+....               ..+.|+|+|++|+.++.++   .|.+||+.++ . ...+... .......|+|+  
T Consensus       316 ~l~~~~~~~---------------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~-~~~~~p~~spd--  375 (417)
T TIGR02800       316 RLTFRGGYN---------------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDT-GLDESPSFAPN--  375 (417)
T ss_pred             EeecCCCCc---------------cCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCC-CCCCCceECCC--
Confidence            333222211               4789999999999888776   7899998875 2 2233222 23345678887  


Q ss_pred             ccccccceeeeecccCc
Q 014644          361 ARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d~~  377 (421)
                      ++     .|+..+.++.
T Consensus       376 g~-----~l~~~~~~~~  387 (417)
T TIGR02800       376 GR-----MILYATTRGG  387 (417)
T ss_pred             CC-----EEEEEEeCCC
Confidence            33     5555555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=9.2e-12  Score=113.79  Aligned_cols=291  Identities=12%  Similarity=0.098  Sum_probs=194.8

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ..+.++++|  +....++|.|+.||.+++-.+.+........    +                         ++..+   
T Consensus        14 nvkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----g-------------------------laa~s---   59 (1189)
T KOG2041|consen   14 NVKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKS----G-------------------------LAAAS---   59 (1189)
T ss_pred             CceEEEEEE--cccCCeEEeccccceeEEEEccccCCccccc----c-------------------------ccccc---
Confidence            346789999  7889999999999999999988754110000    0                         00000   


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                   ....-+++ .||.+.|.-+.|+.+.+.|.++ .+|-|.+|-+-.+.-+-..+.      ......|.
T Consensus        60 -------------nLsmNQtL-eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN------nRnKSvV~  119 (1189)
T KOG2041|consen   60 -------------NLSMNQTL-EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN------NRNKSVVV  119 (1189)
T ss_pred             -------------ccchhhhh-ccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh------CcCccEEE
Confidence                         00233455 8999999999999999999999 999999999874433322221      33456799


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      +++|+.+| ..|+....||.|.+=.+...+...+.++   +               .....+.|++|.+.++.+-. |.+
T Consensus       120 SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk---g---------------~~l~hv~ws~D~~~~Lf~~ange~  180 (1189)
T KOG2041|consen  120 SMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK---G---------------QLLAHVLWSEDLEQALFKKANGET  180 (1189)
T ss_pred             EEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc---h---------------heccceeecccHHHHHhhhcCCcE
Confidence            99999999 9999999999998888877654432222   1               23457899999998887755 999


Q ss_pred             EEEECCCCCcceeEE--------ee-ccCcccccccccCCCcceeeeEEEE--------cCCCCEEEEeeCCCeEEEEec
Q 014644          271 KLWDIRMDSTPVATF--------KI-HEHLRPKLCDLYNNDSIFDKFECSV--------SGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      .+||...  .....+        .+ -.....++            ..+.|        -|+...++.+-.+|.+.|-.-
T Consensus       181 hlydnqg--nF~~Kl~~~c~Vn~tg~~s~~~~ki------------a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  181 HLYDNQG--NFERKLEKDCEVNGTGIFSNFPTKI------------AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             EEecccc--cHHHhhhhceEEeeeeeecCCCccc------------cceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            9999752  211111        11 01111111            23333        357788999999999988776


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCccc----------C-CCCCccccccccccCeEEEEEc
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHE----------N-SSSGHHELSYNLSSKLLHLAWH  402 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~i----------w-~~~~~~~~~~~~~~~v~~~~~s  402 (421)
                      .+.......-.+  -.+....|+++       +..||..+.+....          + ..++....+......|+.++|-
T Consensus       247 eND~~Pvv~dtg--m~~vgakWnh~-------G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  247 ENDPEPVVVDTG--MKIVGAKWNHN-------GAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             cCCCCCeEEecc--cEeecceecCC-------CcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEc
Confidence            665333333222  33445667776       34787777654411          1 2334445555567789999999


Q ss_pred             cCCCeEEEecCCceEEE
Q 014644          403 PTTNLIACANGNSLFFH  419 (421)
Q Consensus       403 pd~~~la~~~~~~~~i~  419 (421)
                      ..|-.+|.+.++-|++=
T Consensus       318 g~gLriA~Avdsfiyfa  334 (1189)
T KOG2041|consen  318 GTGLRIAIAVDSFIYFA  334 (1189)
T ss_pred             CCceEEEEEecceEEEE
Confidence            99999999998877764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=8.6e-11  Score=110.01  Aligned_cols=170  Identities=15%  Similarity=0.110  Sum_probs=102.9

Q ss_pred             eEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCC--eEE
Q 014644          141 INSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVR  213 (421)
Q Consensus       141 v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~--~v~  213 (421)
                      +...+|+|||+.|+. . .++  .|.+||+. ++...+.        ..+........|+|++ +.|+..+ .++  .|.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~l--------t~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy  314 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSRV--------TNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIY  314 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEEc--------ccCCCCcCCeEECCCC-CEEEEEECCCCCceEE
Confidence            446889999998875 3 444  58888987 3433322        3344456678999999 7666555 333  566


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeecc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      ++|+.+++..    ++...              ........|+|||++|+....    ..|.++|+.+ ++. ..+.. .
T Consensus       315 ~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~~-~~lt~-~  373 (430)
T PRK00178        315 KVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GSV-RILTD-T  373 (430)
T ss_pred             EEECCCCCEE----EeecC--------------CCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CCE-EEccC-C
Confidence            7777665421    11111              112345789999999986532    3588889875 443 33321 1


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      ...               ....|+|||++++..+.+   ..|+++++..  .....+..+.+.+....|+|.
T Consensus       374 ~~~---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g--~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        374 SLD---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSING--RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCC---------------CCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCCCCCcCCCccCCC
Confidence            111               256899999998876653   3466777653  334445555555666666653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=1.8e-11  Score=104.19  Aligned_cols=164  Identities=15%  Similarity=0.155  Sum_probs=118.1

Q ss_pred             ceEEEeecCCCCEEEE-E-cC--CcEEEEeCCCCceeeeeeecCCCCCC-ccCCCeeEEEEecC--CCCeEEEEEcCCeE
Q 014644          140 NINSISNNSDCETFVS-A-DD--LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPI--YCNLLAYSSSRGFV  212 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s-~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~--~~~~l~s~~~d~~v  212 (421)
                      .+..+.-++....+++ | ..  ..+++||++...+.+....++.-.+. .-.-.++++.|-|.  . ..|++++.-+.|
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqv  228 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQV  228 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeE
Confidence            3444555555455544 6 66  78999999854333332222211111 01234668889887  5 889999999999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE-EeeccC
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEH  290 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~  290 (421)
                      |+||.+.++..   +..+..             ...+++++...|+|++|++|.. +.+..||++. +..... +.+-.+
T Consensus       229 R~YDt~~qRRP---V~~fd~-------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  229 RLYDTRHQRRP---VAQFDF-------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITG  291 (412)
T ss_pred             EEecCcccCcc---eeEecc-------------ccCcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccC
Confidence            99999976533   233332             2568999999999999999987 9999999997 554433 666666


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .+               .++..+|.+++|++++-|..+||+|+++.
T Consensus       292 si---------------rsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  292 SI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             Cc---------------ceEEEcCCCceEEeeccceeEEEeecccc
Confidence            54               78999999999999999999999999985

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.9e-10  Score=101.43  Aligned_cols=252  Identities=13%  Similarity=0.098  Sum_probs=145.6

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc--
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW--  110 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--  110 (421)
                      ..++..++  +++|.++|.+. +..++|++..... ..+...                ...+.+.+++.+.++.+-.-  
T Consensus        35 ~~~~v~~~--S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~----------------~~~~~L~fSP~g~yL~T~e~~~   95 (566)
T KOG2315|consen   35 RPCNVFAY--SNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL----------------KKTYDLLFSPKGNYLLTWEPWA   95 (566)
T ss_pred             CcceeEEE--cCCCcEEEEEc-CCeEEEEEccCCcEEEEecc----------------ceeeeeeecccccccccccccc
Confidence            34455555  67777776655 5689999988774 222111                13344555555555544222  


Q ss_pred             ------ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          111 ------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       111 ------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                            ...-.+.+|++++.   ...-.+....... +++.|++|..+.+--..+.+.+|+.........         .
T Consensus        96 i~~~~~~~~pn~~v~~vet~---~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~---------k  162 (566)
T KOG2315|consen   96 IYGPKNASNPNVLVYNVETG---VQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH---------K  162 (566)
T ss_pred             cccCCCCCCCceeeeeeccc---eehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee---------e
Confidence                  11125678888875   3333332222222 688899877544333677899999873222222         2


Q ss_pred             ccCCCeeEEEEecCC-CCeEEE-----EEcCCeEEEEECCccccc-----------ccchhhhc----------------
Q 014644          185 DLTEVITSAEFHPIY-CNLLAY-----SSSRGFVRLVDMRQSALC-----------DHSARILR----------------  231 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~-~~~l~s-----~~~d~~v~iwd~~~~~~~-----------~~~~~~~~----------------  231 (421)
                      -|...|..+.++|.. +..+++     .+.-..|+||........           ++....|.                
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            256678888888873 234443     234457788776521110           00000000                


Q ss_pred             ------c----ccccC-C-CcccccccccceeEEEEcCCCCEEEEe--cC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          232 ------D----AAESH-G-SKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       232 ------~----h~~~~-~-~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                            +    |.... + ...+--...++|.++.|+|+|+-+++.  -. -.+.|||++  +.++..+..  ++.    
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~e--gpR----  314 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPE--GPR----  314 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCC--CCc----
Confidence                  0    00000 0 000001126899999999999888764  34 889999997  777766533  332    


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEecCCC
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVG  336 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~~~~  336 (421)
                                 ..+-|+|.|++|+.++.   -|.|-|||+.+.
T Consensus       315 -----------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  315 -----------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             -----------cceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence                       57899999999987775   478999999875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.42  E-value=8.7e-11  Score=109.80  Aligned_cols=151  Identities=14%  Similarity=0.087  Sum_probs=93.5

Q ss_pred             CcceEEEeecCCCCEEEE-E-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CC--
Q 014644          138 DFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--  210 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s-~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~--  210 (421)
                      .+.+.+++|+|||+.|+. . .++  .|++|++. +++....        ..+........|+|++ +.|+..+. ++  
T Consensus       233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~l--------~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~  302 (417)
T TIGR02800       233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTRL--------TNGPGIDTEPSWSPDG-KSIAFTSDRGGSP  302 (417)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEEC--------CCCCCCCCCEEECCCC-CEEEEEECCCCCc
Confidence            344566889999997775 3 443  58888887 3333222        2333445577899999 77766553 33  


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C---eEEEEECCCCCcceeEEe
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M---NLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~---~i~i~d~~~~~~~~~~~~  286 (421)
                      .|.++|+..+...    . +..             +...+..+.|+|+|++|+.+.. +   .|.+||+.+ +. ...+.
T Consensus       303 ~iy~~d~~~~~~~----~-l~~-------------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~  362 (417)
T TIGR02800       303 QIYMMDADGGEVR----R-LTF-------------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLT  362 (417)
T ss_pred             eEEEEECCCCCEE----E-eec-------------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEcc
Confidence            5777787654321    1 111             1345677899999999987643 3   788888875 33 23332


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG  334 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~  334 (421)
                      .....                ...+|+|+|++|+..+.++   .+++.+..
T Consensus       363 ~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       363 DTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            22111                3568999999988777654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.1e-11  Score=110.65  Aligned_cols=215  Identities=13%  Similarity=0.117  Sum_probs=125.1

Q ss_pred             CCCCcceEEEeecCCCCEEEEE--cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d  209 (421)
                      ..+...+.+..|+|||+.|+..  .++  .|.+||+. +++....        ..........+|+||| +.|+ +.+.+
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~-tg~~~~l--------t~~~g~~~~~~wSPDG-~~La~~~~~~  283 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY-TQVREKV--------TSFPGINGAPRFSPDG-KKLALVLSKD  283 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC-CCCeEEe--------cCCCCCcCCeeECCCC-CEEEEEEeCC
Confidence            3556678899999999998875  343  58888887 3333222        1112234568999999 6555 45666


Q ss_pred             Ce--EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644          210 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       210 ~~--v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~  283 (421)
                      +.  |.++|+.+++..    ++ ..             +.......+|+|||+.|+..++    ..|+++|+.+ ++. .
T Consensus       284 g~~~Iy~~dl~tg~~~----~l-t~-------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~~-~  343 (448)
T PRK04792        284 GQPEIYVVDIATKALT----RI-TR-------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GKV-S  343 (448)
T ss_pred             CCeEEEEEECCCCCeE----EC-cc-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence            64  777788765422    11 11             1334567899999998876532    3566677764 443 3


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC--eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      .+.......               ...+|+|||++|+..+. ++  .|.++|+.++.  ...+... .......|+|+  
T Consensus       344 ~Lt~~g~~~---------------~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spd--  403 (448)
T PRK04792        344 RLTFEGEQN---------------LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPSVAPN--  403 (448)
T ss_pred             EEecCCCCC---------------cCeeECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCceECCC--
Confidence            332111111               35789999999887655 34  45667777652  2233322 22335578887  


Q ss_pred             ccccccceeeee-cccCc-ccC--CCC-CccccccccccCeEEEEEccC
Q 014644          361 ARRSSLSNLTRG-LYRQA-HEN--SSS-GHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       361 ~~~~~~~~l~~g-~~d~~-~iw--~~~-~~~~~~~~~~~~v~~~~~spd  404 (421)
                      ++     .|+.. ..++. .+|  +.. ............+...+|+|-
T Consensus       404 G~-----~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        404 GT-----MVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CC-----EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            44     44443 34444 566  222 223333333456777888873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=4.5e-13  Score=116.20  Aligned_cols=188  Identities=10%  Similarity=0.041  Sum_probs=160.5

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  268 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  268 (421)
                      ..+.+.++.+| ..++.++..|.|..+|..++.+.    ..+..              ...|.++.|-.+.+++|++...
T Consensus       131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~----~Ei~v--------------~Etv~Dv~~LHneq~~AVAQK~  191 (545)
T KOG1272|consen  131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLH----FEINV--------------METVRDVTFLHNEQFFAVAQKK  191 (545)
T ss_pred             CCeeeeecCCc-cEEEecCCccceeeeecccceee----eeeeh--------------hhhhhhhhhhcchHHHHhhhhc
Confidence            45788999999 99999999999999999998754    22333              4578999999999999999878


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .++|||-.  |..+.-++.+...                ..+.|-|..-+|++++..|.++.-|+.+| ..+..+....+
T Consensus       192 y~yvYD~~--GtElHClk~~~~v----------------~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G  252 (545)
T KOG1272|consen  192 YVYVYDNN--GTELHCLKRHIRV----------------ARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAG  252 (545)
T ss_pred             eEEEecCC--CcEEeehhhcCch----------------hhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCC
Confidence            99999964  7777777766643                68999999889999999999999999998 67777777778


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      .+..+...|.       +..+-.|..+|+ .+|  ...+.+..+..|.++|.++++.++|+++|+++ +..+.||+.
T Consensus       253 ~~~vm~qNP~-------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  253 RTDVMKQNPY-------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL  322 (545)
T ss_pred             ccchhhcCCc-------cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence            8888888887       558899999999 999  66788889999999999999999999999988 666999974

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=8.2e-11  Score=109.80  Aligned_cols=168  Identities=16%  Similarity=0.189  Sum_probs=100.5

Q ss_pred             EEEeecCCCCEEEE-E-cCCc--EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCC--eEEE
Q 014644          142 NSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRL  214 (421)
Q Consensus       142 ~~l~~~~~~~~l~s-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~--~v~i  214 (421)
                      ...+|+|||+.|+. . .++.  |.++|+. +++..++        ..+.......+|+||+ +.|+..+ .++  .|.+
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~l--------t~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~  334 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTRI--------TRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYR  334 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEEC--------ccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence            46789999998876 3 5665  7777876 3333222        3344556778999999 6666554 344  4666


Q ss_pred             EECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCCCEEEEecC--C--eEEEEECCCCCcceeEEeecc
Q 014644          215 VDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       215 wd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      +|+.+++..    ++ +..               ......+|+|||++|+..+.  +  .|.++|+.+ ++. ..+....
T Consensus       335 ~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~~-~~lt~~~  393 (448)
T PRK04792        335 VNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GAM-QVLTSTR  393 (448)
T ss_pred             EECCCCCEE----EEecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CCe-EEccCCC
Confidence            677665421    11 111               12345689999999876532  4  455667764 432 3332211


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC--eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                       ..               ....|+|||++|+..+. +|  .+++++.. + .....+..+.+.+...+|+|.
T Consensus       394 -~d---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        394 -LD---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             -CC---------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCCC
Confidence             11               24689999998876654 33  37777764 3 445555555556666777653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=3.6e-12  Score=105.29  Aligned_cols=254  Identities=16%  Similarity=0.144  Sum_probs=148.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce---eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ..-.+.|++|.|  ...|.+|++|..-|.|.++.-+...   .+.+..+..++.-+                        
T Consensus        23 ~tead~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF------------------------   76 (460)
T COG5170          23 STEADKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF------------------------   76 (460)
T ss_pred             ccccceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhcccccch------------------------
Confidence            344678999999  7789999999999999999855432   22222222222100                        


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC---CCEEEEEcCCcEEEEeCCCC--------------
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSADDLRINLWNLEIS--------------  169 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~d~~i~lwd~~~~--------------  169 (421)
                                           .-++.+  .-...|..+.|..+   ..+|+++.|.+|++|.+...              
T Consensus        77 ---------------------DYLkSl--eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~  133 (460)
T COG5170          77 ---------------------DYLKSL--EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF  133 (460)
T ss_pred             ---------------------hhhhhc--cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc
Confidence                                 111111  22345777777654   34677779999999988632              


Q ss_pred             ----c-ee--------------eeeeecCCC--CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchh
Q 014644          170 ----D-QC--------------FNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  228 (421)
Q Consensus       170 ----~-~~--------------~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  228 (421)
                          + ..              ..++..++.  ....|...|.++.|+.|. ..+++ +.|-.|.+|++......   ..
T Consensus       134 ~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~s---Fn  208 (460)
T COG5170         134 HSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGS---FN  208 (460)
T ss_pred             ccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCc---eE
Confidence                0 00              011111222  124677888999999987 66665 46778999988753211   12


Q ss_pred             hhccccccCCCcccccccccceeEEEEcCCCC-EEE-EecCCeEEEEECCCCCcceeE---EeeccCcccccccccCCCc
Q 014644          229 ILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL-SRDYMNLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDS  303 (421)
Q Consensus       229 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~-~~~~~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  303 (421)
                      +.+.   .|.   -+.....-|++..|+|... .+. +.+.|.|++-|++...-+...   +......+.   .-+-.+.
T Consensus       209 IVDi---KP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~---~~ff~ei  279 (460)
T COG5170         209 IVDI---KPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD---VDFFEEI  279 (460)
T ss_pred             EEec---cCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc---chhHHHH
Confidence            2111   011   1112245688999999644 333 444599999999842211111   111100000   0000111


Q ss_pred             ceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          304 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       304 ~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +-.+..+.|+++|++|++-+. -+++|||++.....+.++..|.
T Consensus       280 vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         280 VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence            112368899999999987765 7899999998877777776664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.2e-10  Score=109.12  Aligned_cols=215  Identities=14%  Similarity=0.110  Sum_probs=128.3

Q ss_pred             CCCCcceEEEeecCCCCEEEEE--cC--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~--~d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d  209 (421)
                      ..+...+...+|+|||+.|+..  .+  ..|.+|++. +++...+        ....+.+....|+|+| +.|+ +.+.+
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~-~g~~~~l--------~~~~g~~~~~~~SpDG-~~la~~~~~~  264 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD-TGRREQI--------TNFEGLNGAPAWSPDG-SKLAFVLSKD  264 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC-CCCEEEc--------cCCCCCcCCeEECCCC-CEEEEEEccC
Confidence            3566788999999999998764  33  368889998 3433322        1222345578999999 6665 45455


Q ss_pred             C--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCccee
Q 014644          210 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       210 ~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~  283 (421)
                      +  .|.+||+.++...    . +..             +........|+|||+.|+..++    ..|+++|+.. ++. .
T Consensus       265 g~~~Iy~~d~~~~~~~----~-lt~-------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~~-~  324 (430)
T PRK00178        265 GNPEIYVMDLASRQLS----R-VTN-------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GRA-E  324 (430)
T ss_pred             CCceEEEEECCCCCeE----E-ccc-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CCE-E
Confidence            5  6888898876432    1 111             1334566789999998876543    3577778764 443 2


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-C--eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                      .+.......               ....|+|+|++|+..+.+ +  .|.+||+.++..  ..+.. ........|+|+  
T Consensus       325 ~lt~~~~~~---------------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spd--  384 (430)
T PRK00178        325 RVTFVGNYN---------------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPN--  384 (430)
T ss_pred             EeecCCCCc---------------cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCC--
Confidence            222111111               357899999999877653 3  588899887632  22222 223345678887  


Q ss_pred             ccccccceeeeec-ccCc-ccC--CCCC-ccccccccccCeEEEEEccC
Q 014644          361 ARRSSLSNLTRGL-YRQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       361 ~~~~~~~~l~~g~-~d~~-~iw--~~~~-~~~~~~~~~~~v~~~~~spd  404 (421)
                      |+     .++..+ ..+. +++  ...+ ...........+...+|+|-
T Consensus       385 g~-----~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        385 GT-----MLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CC-----EEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            44     454443 3344 566  2222 22222233455677788874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=7.4e-10  Score=100.04  Aligned_cols=299  Identities=11%  Similarity=0.081  Sum_probs=156.3

Q ss_pred             ccccccccccEE-EEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           26 YLKSLEIEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        26 ~~~~~~h~~~V~-~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      .+..+.....+. .+.|  ++|++++.+++.||.|.++|+.+.+..                                  
T Consensus        28 ~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v----------------------------------   71 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVV----------------------------------   71 (369)
T ss_dssp             EEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEE----------------------------------
T ss_pred             EEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEE----------------------------------
Confidence            344444333443 3566  899999999999999999999987621                                  


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                                +.+ .. ......+++++||++++++  .++.+.++|.+ +.+.++.+......
T Consensus        72 --------------------------~~i-~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~  122 (369)
T PF02239_consen   72 --------------------------ATI-KV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMP  122 (369)
T ss_dssp             --------------------------EEE-E--SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-
T ss_pred             --------------------------EEE-ec-CCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeeccccccc
Confidence                                      111 11 1235789999999999986  79999999998 55666655322111


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .......+.++..+|.. ..++..- ..+.|.+-|........  ...+..              ........|+|+++|
T Consensus       123 ~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  123 VDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRY  185 (369)
T ss_dssp             TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSE
T ss_pred             ccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccce
Confidence            11234567888888887 5455444 45888888877643210  112222              345678899999999


Q ss_pred             EEEe-cC-CeEEEEECCCCCcceeEEeeccCccc-ccccccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCC
Q 014644          262 LLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRP-KLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       262 l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++.+ .. +.|-++|.++ ++.+..+.....+.+ +.....+..     ....|..  .+...++.-....+.+||....
T Consensus       186 ~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~-----~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w  259 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPG-----FGPVWATSGLGYFAIPLIGTDPVSVHDDYAW  259 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETT-----TEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred             eeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCC-----cceEEeeccccceecccccCCccccchhhcC
Confidence            8776 33 8999999986 666555443211100 000000000     1122221  2222222222345556777766


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeee---ccc-Cc-ccCCCCCcc-ccccc--cccCeEEEEEccCCCeE
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---LYR-QA-HENSSSGHH-ELSYN--LSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~d-~~-~iw~~~~~~-~~~~~--~~~~v~~~~~spd~~~l  408 (421)
                       +....+.....+ --+..+|+  ++     ++...   +.+ +. .+++...+. ...+.  ....+..+.|++||+.+
T Consensus       260 -kvv~~I~~~G~g-lFi~thP~--s~-----~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  260 -KVVKTIPTQGGG-LFIKTHPD--SR-----YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             -SEEEEEE-SSSS---EE--TT---S-----EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             -eEEEEEECCCCc-ceeecCCC--Cc-----cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence             556666665554 44555666  22     55444   222 22 455333221 11221  22348899999999987


Q ss_pred             EEec--CC-ceEEEeC
Q 014644          409 ACAN--GN-SLFFHYA  421 (421)
Q Consensus       409 a~~~--~~-~~~i~~~  421 (421)
                      ..+.  .+ .|.+|++
T Consensus       331 ~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  331 WVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EEEEE--TTEEEEEET
T ss_pred             EEEEecCCCEEEEEEC
Confidence            6655  44 6999875

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2e-10  Score=102.65  Aligned_cols=274  Identities=15%  Similarity=0.159  Sum_probs=171.6

Q ss_pred             ccCCCCceeeeccccccCCCccccccc-----cc-cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCC
Q 014644            4 TSTSHPEYRYKTEFQSHEPEFDYLKSL-----EI-EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH   77 (421)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h-~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~   77 (421)
                      .+++.|+|.............--+..+     .| ...|..+..+ +.|-..++-=..|.+|.+....... ..+.   .
T Consensus        58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~h-y~~R---I  132 (703)
T KOG2321|consen   58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRH-YRTR---I  132 (703)
T ss_pred             EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEe-ccchhhheEeecCceeeehhhcCee-eeee---c
Confidence            356778888877755443322112211     22 2234444433 3343444455567777665533221 1111   1


Q ss_pred             CCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-
Q 014644           78 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-  156 (421)
Q Consensus        78 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-  156 (421)
                      +..-.+|+++.++-.+++.+..              ..+.=.+++.+   +-+..| .-..+.++++..++...+|++| 
T Consensus       133 P~~GRDm~y~~~scDly~~gsg--------------~evYRlNLEqG---rfL~P~-~~~~~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSG--------------SEVYRLNLEQG---RFLNPF-ETDSGELNVVSINEEHGLLACGT  194 (703)
T ss_pred             CcCCccccccCCCccEEEeecC--------------cceEEEEcccc---cccccc-ccccccceeeeecCccceEEecc
Confidence            1122234444333333333221              12222344444   555555 5556889999999999999999 


Q ss_pred             cCCcEEEEeCCCCceeeeeeecCCCCCCccCC-----CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhc
Q 014644          157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  231 (421)
Q Consensus       157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  231 (421)
                      .+|.|..||.+ ....+..++... ....|.+     .|+++.|+-+| -.+++|+.+|.+.|||++..+....     .
T Consensus       195 ~~g~VEfwDpR-~ksrv~~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----k  266 (703)
T KOG2321|consen  195 EDGVVEFWDPR-DKSRVGTLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----K  266 (703)
T ss_pred             cCceEEEecch-hhhhheeeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----c
Confidence            89999999998 555555554332 2333443     49999999998 8999999999999999999764421     1


Q ss_pred             cccccCCCcccccccccceeEEEEcCC--CCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeE
Q 014644          232 DAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  309 (421)
Q Consensus       232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      .|           ...-+|..+.|.+.  +..+++.....++|||-.+ +++...+......                ..
T Consensus       267 dh-----------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND  318 (703)
T KOG2321|consen  267 DH-----------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------ND  318 (703)
T ss_pred             cc-----------CCccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------Cc
Confidence            11           11457889999775  4566666658999999987 8877766544432                68


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          310 CSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       310 ~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +|+-|++.+++++-+++.+..|-+..-
T Consensus       319 ~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  319 FCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             eeeecCCceEEEecCCCcceeEEcccc
Confidence            999999999999999988877766543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=4e-10  Score=104.39  Aligned_cols=222  Identities=15%  Similarity=0.120  Sum_probs=123.8

Q ss_pred             CCCcceEEEeecCCCCEE---EEE-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-
Q 014644          136 AHDFNINSISNNSDCETF---VSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-  208 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l---~s~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-  208 (421)
                      .....+.+-+|+|||+.+   +++ .++  .|.+.++. +++..++.        ...+.....+|+||| +.|+..+. 
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~-~g~~~~lt--------~~~g~~~~p~wSPDG-~~Laf~s~~  251 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLE-NPAGKKIL--------ALQGNQLMPTFSPRK-KLLAFISDR  251 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECC-CCCceEee--------cCCCCccceEECCCC-CEEEEEECC
Confidence            345566788999999752   245 444  46666777 44433332        233445568999999 77766542 


Q ss_pred             CC----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--Ce--EEEEECCCCCc
Q 014644          209 RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN--LKLWDIRMDST  280 (421)
Q Consensus       209 d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~--i~i~d~~~~~~  280 (421)
                      +|    .+..|++..+... ...++...             ........+|+|||+.|+..++  +.  |+++++...+.
T Consensus       252 ~g~~di~~~~~~~~~g~~g-~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        252 YGNPDLFIQSFSLETGAIG-KPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCcceeEEEeecccCCCC-cceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence            23    3444666543100 00111111             1123457899999998886543  54  44445432223


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (421)
                      ....+.......               ....|+|||+.|+..+.+   ..|++||+.++..  ..+......+....|+|
T Consensus       318 ~~~~lt~~~~~~---------------~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSp  380 (428)
T PRK01029        318 SPRLLTKKYRNS---------------SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAI  380 (428)
T ss_pred             ceEEeccCCCCc---------------cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECC
Confidence            233333322211               468999999998876543   4699999987732  33333334567788988


Q ss_pred             CCcccccccceee-eecccCc-ccC--CC-CCccccccccccCeEEEEEccCC
Q 014644          358 APRARRSSLSNLT-RGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTT  405 (421)
Q Consensus       358 ~~~~~~~~~~~l~-~g~~d~~-~iw--~~-~~~~~~~~~~~~~v~~~~~spd~  405 (421)
                      +  ++     .|+ +...++. .+|  +. ++...........+...+|+|-.
T Consensus       381 D--G~-----~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        381 D--SL-----HLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             C--CC-----EEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            8  44     444 4444444 565  32 22222233334456678888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.4e-08  Score=91.89  Aligned_cols=272  Identities=10%  Similarity=0.107  Sum_probs=152.5

Q ss_pred             CCCccccccccccccEEEEEEEEcCCCCeEEEEeC----CCcEEEeecCC--ceeEEeeecCCCCCccccccccccccee
Q 014644           21 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFM   94 (421)
Q Consensus        21 ~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~----d~~v~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~   94 (421)
                      ..++..+....-...-.-+++  ++++++|.++..    ++.|..|++..  +++..+......+           ....
T Consensus        24 ~g~l~~~~~~~~~~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----------~~p~   90 (345)
T PF10282_consen   24 TGTLTLVQTVAEGENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----------SSPC   90 (345)
T ss_dssp             TTEEEEEEEEEESSSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----------SCEE
T ss_pred             CCCceEeeeecCCCCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----------CCcE
Confidence            334444443333444566777  688888887766    57999999876  4555444332111           1122


Q ss_pred             eccCCCCceeeeecccccccceeEEeeccc-ceeeeeeeec---------CCCCcceEEEeecCCCCEEEEE--cCCcEE
Q 014644           95 NEHNPPSFAHGYHLEWTENMATKIANVGNS-VHARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRIN  162 (421)
Q Consensus        95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~l~s~--~d~~i~  162 (421)
                      .+..+++..++...... .+.+.++++... ........+.         +.......++.++|+++++++.  ....|.
T Consensus        91 ~i~~~~~g~~l~vany~-~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~  169 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYG-GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY  169 (345)
T ss_dssp             EEEECTTSSEEEEEETT-TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             EEEEecCCCEEEEEEcc-CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence            23444555555544332 334555655542 1122222110         1234567899999999988886  566899


Q ss_pred             EEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECC--cccccccchhhhccccccCC
Q 014644          163 LWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QSALCDHSARILRDAAESHG  238 (421)
Q Consensus       163 lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~--~~~~~~~~~~~~~~h~~~~~  238 (421)
                      +|+++.... +.....+   .+ ......+.++|+|++ ++++.. ..+++|.++++.  .+...  .......   .+.
T Consensus       170 ~~~~~~~~~~l~~~~~~---~~-~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~---~~~  239 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSI---KV-PPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLT--EIQTIST---LPE  239 (345)
T ss_dssp             EEEE-TTS-TEEEEEEE---EC-STTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---CET
T ss_pred             EEEEeCCCceEEEeecc---cc-ccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCcee--EEEEeee---ccc
Confidence            999974432 2211100   11 233456899999999 666544 577899999988  33211  1111111   000


Q ss_pred             CcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCC-Ccc--eeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644          239 SKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  313 (421)
Q Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  313 (421)
                         -+. .......++++|||++|.++..  +.|.+|++... +..  +..+.......               +.++++
T Consensus       240 ---~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P---------------r~~~~s  300 (345)
T PF10282_consen  240 ---GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP---------------RHFAFS  300 (345)
T ss_dssp             ---TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---------------EEEEE-
T ss_pred             ---ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---------------cEEEEe
Confidence               000 1236789999999999987643  89999999532 322  22222212211               689999


Q ss_pred             CCCCEEEEee-CCCeEEEEecCC
Q 014644          314 GDGLHFATGS-YSNLLRIFSHGV  335 (421)
Q Consensus       314 p~~~~l~~~s-~dg~i~iwd~~~  335 (421)
                      |+|++|+++. .++.|.+|+++.
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEEEEEecCCCeEEEEEEeC
Confidence            9999998877 467899998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6e-09  Score=88.65  Aligned_cols=204  Identities=9%  Similarity=0.083  Sum_probs=129.1

Q ss_pred             ccceeEEeeccccee-eeeeeecCCCCcceEEEeecCCCCEEEEE--c--CCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          113 NMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      ..-+..|++++.... ..++.  -.+.+.++-|+|+|+++.|.++  .  +|.|--|.++.....+..+..  ....  .
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~~~--g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QTLP--G   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cccC--C
Confidence            346788888743221 22222  3567788999999999999986  3  688988888843233333321  1112  2


Q ss_pred             CCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      .+...+++++++ ++++++. .-|.|.++-++............. |. .+...  ......-+....+.|++++|++.+
T Consensus        89 ~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~-g~~p~--~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          89 SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HT-GSGPH--ERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeee-cC-CCCCC--ccccCCccceeeeCCCCCEEEEee
Confidence            334889999999 8888877 458999999876332222212111 11 11000  011122378899999999999875


Q ss_pred             C--CeEEEEECCCCCcceeE----EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCc
Q 014644          267 Y--MNLKLWDIRMDSTPVAT----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAG  339 (421)
Q Consensus       267 ~--~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~  339 (421)
                      -  ..|.+|++. ++.....    ++...++                +.+.|+|++++.+...+ +++|.+|..+.....
T Consensus       164 LG~Dri~~y~~~-dg~L~~~~~~~v~~G~GP----------------RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         164 LGTDRIFLYDLD-DGKLTPADPAEVKPGAGP----------------RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             cCCceEEEEEcc-cCccccccccccCCCCCc----------------ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            4  689999997 3543221    2222222                68999999999887776 899999999875344


Q ss_pred             eeEEe
Q 014644          340 GITVE  344 (421)
Q Consensus       340 ~~~~~  344 (421)
                      ...++
T Consensus       227 ~~~lQ  231 (346)
T COG2706         227 FEELQ  231 (346)
T ss_pred             EEEee
Confidence            44444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=9.2e-11  Score=111.74  Aligned_cols=191  Identities=15%  Similarity=0.079  Sum_probs=143.7

Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      ....+.-.. ..++.++.+..+.+||...+....+   +...      .+    ..-....-+-++++.-++++|+- +.
T Consensus        91 ~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~---i~~~------er----~~l~~~~~~g~s~~~~~i~~gsv~~~  156 (967)
T KOG0974|consen   91 FGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSK---IQSD------ER----CTLYSSLIIGDSAEELYIASGSVFGE  156 (967)
T ss_pred             cccchhhhc-ceEEEEEcCceEEEEecccCceehh---cCCC------ce----EEEEeEEEEeccCcEEEEEecccccc
Confidence            333344444 6788888899999999887654311   1100      00    00112334456777788999987 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  349 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  349 (421)
                      |.+|+..-...+. .+.+|++.+               +++.++-||+++++.|+|.++|+|++++.+....+.-+|+..
T Consensus       157 iivW~~~~dn~p~-~l~GHeG~i---------------F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  157 IIVWKPHEDNKPI-RLKGHEGSI---------------FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             EEEEeccccCCcc-eecccCCce---------------EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            9999997434444 688999865               799999999999999999999999999986667788899999


Q ss_pred             ccceeeecCCcccccccceeeeecccCc-ccCC-CCCcccccccc-ccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNL-SSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~-~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +....+.+.         .+++++.|-+ ++|. .+..+....+| .+.++.++.+++..++++++ ++++.+|+
T Consensus       221 vw~~~~~~n---------~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  221 VWACCFLPN---------RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eEEEEeccc---------eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            999999988         7999999999 9993 33344455566 45699999999999999888 55688875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.8e-09  Score=100.03  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=104.0

Q ss_pred             CcceEEEeecCCCCEEEEE--cCC----cEEEEeCCCC--ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-c
Q 014644          138 DFNINSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S  208 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~--~d~----~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~  208 (421)
                      .+.....+|+|||+.|+..  .+|    .+.+|++...  +...++.       .+........+|+||| +.|+..+ .
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG-~~Laf~s~~  301 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDG-TRLVFVSNK  301 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCC-CEEEEEECC
Confidence            3445578999999988874  233    3444676531  2222222       2222344678999999 7666655 5


Q ss_pred             CCeEEEEEC--CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcce
Q 014644          209 RGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPV  282 (421)
Q Consensus       209 d~~v~iwd~--~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~  282 (421)
                      +|...+|.+  ......   .+.+..             ....+....|+|||+.|+....    ..|.+||+.+ ++..
T Consensus       302 ~g~~~ly~~~~~~~g~~---~~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~~  364 (428)
T PRK01029        302 DGRPRIYIMQIDPEGQS---PRLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRDY  364 (428)
T ss_pred             CCCceEEEEECcccccc---eEEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCeE
Confidence            665555543  321100   011111             1345678899999999886532    4799999975 5443


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                       .+.......               ....|+|||++|+..+.   ...|+++|+..+.  ...+....+.+...+|+|.
T Consensus       365 -~Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~--~~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        365 -QLTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKK--TRKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             -EccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCcccCceecCC
Confidence             332222111               46899999998875443   3578889988652  2333334455666777654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.27  E-value=1.7e-08  Score=91.27  Aligned_cols=262  Identities=9%  Similarity=0.050  Sum_probs=139.2

Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      .+.+.+.|..+.   +.+..+ ......-..+.++|||+++.++ .|+.|.++|+. ..+.++.+.        -.....
T Consensus        15 ~~~v~viD~~t~---~~~~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~--------~G~~~~   81 (369)
T PF02239_consen   15 SGSVAVIDGATN---KVVARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIK--------VGGNPR   81 (369)
T ss_dssp             GTEEEEEETTT----SEEEEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE---------SSEEE
T ss_pred             CCEEEEEECCCC---eEEEEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEe--------cCCCcc
Confidence            345677777776   677776 3333333457899999999988 99999999999 556666552        123468


Q ss_pred             EEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-C
Q 014644          192 SAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-M  268 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~  268 (421)
                      ++++++|| ++++++. ..+.+.++|.++.+..    +.+... ..+.     ......+.++..+|....+ ++--+ +
T Consensus        82 ~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v----~~I~~~-~~~~-----~~~~~Rv~aIv~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   82 GIAVSPDG-KYVYVANYEPGTVSVIDAETLEPV----KTIPTG-GMPV-----DGPESRVAAIVASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             EEEE--TT-TEEEEEEEETTEEEEEETTT--EE----EEEE---EE-T-----TTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred             eEEEcCCC-CEEEEEecCCCceeEeccccccce----eecccc-cccc-----cccCCCceeEEecCCCCEEEEEEccCC
Confidence            89999999 7776654 7899999999886654    222220 0000     0024567888888888844 45566 8


Q ss_pred             eEEEEECCCCCcce--eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEec
Q 014644          269 NLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       269 ~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      .|.+.|... ...+  ..+.....+                ....|+|++++++++ ..++.|-++|..++ .....+..
T Consensus       151 ~I~vVdy~d-~~~~~~~~i~~g~~~----------------~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~  212 (369)
T PF02239_consen  151 EIWVVDYSD-PKNLKVTTIKVGRFP----------------HDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDT  212 (369)
T ss_dssp             EEEEEETTT-SSCEEEEEEE--TTE----------------EEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-
T ss_pred             eEEEEEecc-ccccceeeecccccc----------------cccccCcccceeeecccccceeEEEeeccc-eEEEEeec
Confidence            999999875 3332  233333322                588999999987665 45779999998876 33333322


Q ss_pred             ----CCCCccc-------eeeecCCcccccccceeeeecccCcccCC-CCCccccccccccCeEEEEEccCCCeEEEe--
Q 014644          346 ----GKNENRK-------PILQAAPRARRSSLSNLTRGLYRQAHENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACA--  411 (421)
Q Consensus       346 ----~~~~~~~-------~~~~~~~~~~~~~~~~l~~g~~d~~~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~--  411 (421)
                          |..+...       ..|.....+.    ..+..-+.+...+|+ ..-.....+...+.-.-+..||++++|.+.  
T Consensus       213 g~~p~~~~~~~~php~~g~vw~~~~~~~----~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~  288 (369)
T PF02239_consen  213 GKKPHPGPGANFPHPGFGPVWATSGLGY----FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF  288 (369)
T ss_dssp             SSSBEETTEEEEEETTTEEEEEEEBSSS----SEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T
T ss_pred             cccccccccccccCCCcceEEeeccccc----eecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc
Confidence                1111111       1121111111    011122222224442 111222222222333678899999999988  


Q ss_pred             -c--CCceEEEe
Q 014644          412 -N--GNSLFFHY  420 (421)
Q Consensus       412 -~--~~~~~i~~  420 (421)
                       +  .+.+.+++
T Consensus       289 ~~~~~~~v~viD  300 (369)
T PF02239_consen  289 LNPDADTVQVID  300 (369)
T ss_dssp             T-SSHT-EEEEE
T ss_pred             CCCCCceEEEEE
Confidence             3  35577765

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.27  E-value=2.3e-10  Score=110.77  Aligned_cols=204  Identities=15%  Similarity=0.094  Sum_probs=133.6

Q ss_pred             eeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          127 ARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       127 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                      +..+..+ ..|...|..++.++.. .++++| .||+|++|+.++-........ ...+...-..++.++.+.+.+ ..+|
T Consensus      1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-S~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-SELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred             ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-eeEEEeccCCceEEEEeccCC-CeEE
Confidence            3556666 7899999999987755 899999 999999999873221100000 001122245778999999998 9999


Q ss_pred             EEEcCCeEEEEECCcccccc---cchhhhccccccCCCcccccccccceeEEEEcCC-CC-EEEEecC-CeEEEEECCCC
Q 014644          205 YSSSRGFVRLVDMRQSALCD---HSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQ-HLLSRDY-MNLKLWDIRMD  278 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~-~l~~~~~-~~i~i~d~~~~  278 (421)
                      .++.||.|++.++.......   ...+..+.           ......+..-+|... +. .++.+.+ +.|..||+++ 
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-----------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~- 1182 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-----------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM- 1182 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccc-----------cCCCceEEeecccccccceeEEEEEeccceEEecchh-
Confidence            99999999999987631110   00011111           001112333334332 33 6667777 9999999986 


Q ss_pred             CcceeEEee--ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644          279 STPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  356 (421)
Q Consensus       279 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  356 (421)
                      .....+++.  ..+.+               ++++.+|.+.+++.|+..|.+.+||++-+......-.++..+++.+..+
T Consensus      1183 ~~~~w~lk~~~~hG~v---------------TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLV---------------TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred             hhhHHhhhcCccccce---------------eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence            444333332  22222               7999999999999999999999999997633334444566788888888


Q ss_pred             cCCc
Q 014644          357 AAPR  360 (421)
Q Consensus       357 ~~~~  360 (421)
                      +-.+
T Consensus      1248 ~~~~ 1251 (1431)
T KOG1240|consen 1248 PTYP 1251 (1431)
T ss_pred             ccCC
Confidence            7754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=5.3e-10  Score=106.70  Aligned_cols=149  Identities=12%  Similarity=0.101  Sum_probs=119.5

Q ss_pred             eecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644          145 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       145 ~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      -++++.-++++| --+.|.+|+........        .+.+|.+.|.++.|+.+| .++++.|+|.++|+|++.+.+..
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc
Confidence            346667788888 89999999988433333        247999999999999999 99999999999999999987643


Q ss_pred             ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCC
Q 014644          224 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND  302 (421)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      .   -.             .-+|...+..+.|.|+  .+++++. -+.++|+.+  +..+..+..|...           
T Consensus       211 ~---~~-------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~-----------  259 (967)
T KOG0974|consen  211 G---CT-------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK-----------  259 (967)
T ss_pred             C---cc-------------cccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence            1   11             1345889999999998  7777655 999999875  6666677777653           


Q ss_pred             cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          303 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       303 ~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                         .+..++..++...++|++.||.+++|++...
T Consensus       260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ---ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence               2378999999999999999999999998764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=2.9e-10  Score=104.24  Aligned_cols=242  Identities=8%  Similarity=0.057  Sum_probs=159.6

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec-------CCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM-------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      .....|+.|+....+++.| .||.+++..+.+...-.+.-.+       -.+++.+|.+.|.-+.|+.+. +.|-++..+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence            4457899999999999998 9999999987643221111110       115679999999999999997 889999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcc-eeEEee
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP-VATFKI  287 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~-~~~~~~  287 (421)
                      |.|.+|-+-.+..+.+.   +..            ...+.|.+++|..||..|+..- ||.|.+=.+.. .+. -+.+++
T Consensus        93 GlIiVWmlykgsW~EEM---iNn------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg  156 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEM---INN------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG  156 (1189)
T ss_pred             ceEEEEeeecccHHHHH---hhC------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch
Confidence            99999999888755221   111            1146789999999999988763 47776666542 111 111222


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC------ceeEEec----CCCCccceeeec
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA------GGITVEA----GKNENRKPILQA  357 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~----~~~~~~~~~~~~  357 (421)
                      ..-                 ..+.|++|.+.+..+-.+|.+.++|.+..-.      ......+    ....+..+.|..
T Consensus       157 ~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  157 QLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             hec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence            211                 4789999999988899999999999764310      0011111    111133333322


Q ss_pred             CCccccc-ccceeeeecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEecC
Q 014644          358 APRARRS-SLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       358 ~~~~~~~-~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~  413 (421)
                      ..-+.+. .-+.|+....+|. .|- ..........+....|....|+++|..||+++.
T Consensus       220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccC
Confidence            1111110 1347888888888 777 333344444555678899999999999998873

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=6.9e-10  Score=99.71  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      |...++-| ..|.|.+|++. .++....+     .-..|.+.|.++.++.+- ..|.+++.|+.+..|+.......    
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~----  137 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII----  137 (541)
T ss_pred             CceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----
Confidence            45566668 89999999998 45544433     225799999999999887 89999999999999999886544    


Q ss_pred             hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceee
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  307 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
                      +.+..             ....+.+++.+|||..+++++ ++|++||+++ ++.+..|.+|..++               
T Consensus       138 ~~~~~-------------~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v---------------  187 (541)
T KOG4547|consen  138 RIWKE-------------QKPLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV---------------  187 (541)
T ss_pred             eeecc-------------CCCccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce---------------
Confidence            44443             256789999999999999988 7999999997 99999999999987               


Q ss_pred             eEEEEcCC-----CCEEEEe-eCCCeEEEEecCC
Q 014644          308 FECSVSGD-----GLHFATG-SYSNLLRIFSHGV  335 (421)
Q Consensus       308 ~~~~~sp~-----~~~l~~~-s~dg~i~iwd~~~  335 (421)
                      .+++|.-+     |.++.++ ..+..|.+|-+..
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            56666655     6776654 3456677887765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.20  E-value=6.1e-10  Score=90.04  Aligned_cols=159  Identities=12%  Similarity=0.056  Sum_probs=97.3

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-----cCC
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRG  210 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-----~d~  210 (421)
                      |.++-.+-+.+-.++.++++ .||.+.+.+.+...+....+       +.....-.+.+....+ +.+.++.     .-+
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-------~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-------PSIHSGSASRKICRHG-NSILSGGCGNWNAQD  159 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-------ccccccccccceeecc-cEEecCCcceEeecc
Confidence            44333333334456778888 99999999987322222111       1111111223333344 4444332     223


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcceeEEeec
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      ..+.|+++..+...      ..           ......|.+++-+|..+.+ ++|++ |.+-+||++....++..+..|
T Consensus       160 ~~~a~~~~p~~t~~------~~-----------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah  222 (319)
T KOG4714|consen  160 NFYANTLDPIKTLI------PS-----------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH  222 (319)
T ss_pred             ceeeeccccccccc------cc-----------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh
Confidence            44556655432110      00           0002348899999976655 45666 999999999766677778888


Q ss_pred             cCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      +..+               +.+-|+| ++..|+++++||.+..||..+
T Consensus       223 k~~i---------------~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  223 KAEI---------------WEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhh---------------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8765               7899999 578899999999999999775

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=7.7e-11  Score=104.89  Aligned_cols=287  Identities=18%  Similarity=0.189  Sum_probs=170.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||+++|.++.-.  .+.+-+++++.|++|++|.+....-. +    .                                
T Consensus       732 ~GH~~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~-~----~--------------------------------  772 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDE-I----G--------------------------------  772 (1034)
T ss_pred             cCcHHHhHHHHhc--ccccceeeccCCceEEEEEeccccCc-c----c--------------------------------
Confidence            4899999998773  56788999999999999998753200 0    0                                


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                      +..|..++ +.|+.+|.++.|-.+-++++++ |+-|.+||.-.+..+.+..+      ....+.
T Consensus       773 ----------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~d------apk~~a  828 (1034)
T KOG4190|consen  773 ----------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMED------APKEGA  828 (1034)
T ss_pred             ----------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhc------CcccCC
Confidence                            01577778 8999999999999888777665 66799999873332222221      111222


Q ss_pred             eeEEEEecC-CCCeEEE-EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          190 ITSAEFHPI-YCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       190 v~~~~~~p~-~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      +..+..-|+ ...++.. ++...+|+++|.+......+. ++-..           .+.+..+.+++..+.|++++++-.
T Consensus       829 ~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-kVcna-----------~~Pna~~R~iaVa~~GN~lAa~LS  896 (1034)
T KOG4190|consen  829 GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL-KVCNA-----------PGPNALTRAIAVADKGNKLAAALS  896 (1034)
T ss_pred             CceeEecccCcchheeeeccchhhheeeecccccceeeE-EeccC-----------CCCchheeEEEeccCcchhhHHhc
Confidence            333333343 2134444 468899999999986543111 11111           122467889999999999999844


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE-EecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI-FSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~  345 (421)
                       |.|-+.|.++ ++++..++..+-..               ..++ .|..+.|+....|.++.+ |-...+ ........
T Consensus       897 nGci~~LDaR~-G~vINswrpmecdl---------------lqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kp  958 (1034)
T KOG4190|consen  897 NGCIAILDARN-GKVINSWRPMECDL---------------LQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKP  958 (1034)
T ss_pred             CCcEEEEecCC-CceeccCCcccchh---------------hhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCC
Confidence             9999999997 88877665544211               2222 345566777777777777 765544 21111111


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCcc-------ccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHH-------ELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~-------~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      ...+..   |-.+      .+..|++.-.... .++ +..+..       .....+.+..+.++--|-+..+..|+ .+.
T Consensus       959 ppepah---flqs------vgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen  959 PPEPAH---FLQS------VGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred             CCcchh---hhhc------cCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence            111110   0000      0113333333333 455 222211       11224566778888888887777776 455


Q ss_pred             eEE
Q 014644          416 LFF  418 (421)
Q Consensus       416 ~~i  418 (421)
                      |.+
T Consensus      1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred             eee
Confidence            554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=5.7e-09  Score=93.98  Aligned_cols=193  Identities=14%  Similarity=0.123  Sum_probs=137.6

Q ss_pred             CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE------ecC-------------CCCeEEEEE
Q 014644          148 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF------HPI-------------YCNLLAYSS  207 (421)
Q Consensus       148 ~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~-------------~~~~l~s~~  207 (421)
                      |...++|.. .||.+++|+... .+...-+...    ..-++...+..|      +|.             +...++-|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccC-ceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            456788888 999999999984 4333322100    111223333333      221             114677888


Q ss_pred             cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      ..|.|.+|++..++..    ..+..           .+|.+.|+++.++.+-..|.+++. ..+..|+... ....+.+.
T Consensus        78 ~~g~v~~ys~~~g~it----~~~st-----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~  141 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEIT----AKLST-----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWK  141 (541)
T ss_pred             CCccEEEEEecCCeEE----EEEec-----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeec
Confidence            9999999999988754    22222           456889999999998888888765 9999999985 88888887


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      .....+               .+++.+|||+.+++++  +.|++||+++. +....+.+|.++|+.+.|...-.|.. +.
T Consensus       142 ~~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~-G~  202 (541)
T KOG4547|consen  142 EQKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGII-GK  202 (541)
T ss_pred             cCCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccc-cc
Confidence            776654               6899999999998887  69999999997 88999999999999999986622221 12


Q ss_pred             ceeeeecccCc-ccC
Q 014644          367 SNLTRGLYRQA-HEN  380 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw  380 (421)
                      .+|.+...... .+|
T Consensus       203 ~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  203 YVLSSAAAERGITVW  217 (541)
T ss_pred             eeeeccccccceeEE
Confidence            34555555555 788

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.14  E-value=1.2e-08  Score=84.09  Aligned_cols=243  Identities=14%  Similarity=0.079  Sum_probs=146.7

Q ss_pred             CcceEEEeecC---CCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          138 DFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       138 ~~~v~~l~~~~---~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      +..++.+.|.-   +|. .++-+ .+|.|.++...........-.++...+.  .....++.|++.+ ..++++-.+|.+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~-~~i~vs~s~G~~  145 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSG-TKIFVSDSRGSI  145 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccC-ceEEEEcCCCcE
Confidence            34566777753   555 34446 8899999987633332222111111111  1124677899988 888888888988


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeE-Eeecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~  289 (421)
                      .+-+.....+  +..+.+..             |+-++...+|+.. .+++.+|++ +.+..||++.+++.+.. .+.|.
T Consensus       146 ~~v~~t~~~l--e~vq~wk~-------------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~  210 (339)
T KOG0280|consen  146 SGVYETEMVL--EKVQTWKV-------------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT  210 (339)
T ss_pred             EEEecceeee--eecccccc-------------cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence            8555443321  12234555             4788899999875 456678877 99999999965555444 45565


Q ss_pred             CcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccce
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN  368 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (421)
                      ..+               .++.-+| .+.+|++|++|-.|++||.++-++.+..- .-.+.|..+...|....+     +
T Consensus       211 ~GV---------------~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~-----l  269 (339)
T KOG0280|consen  211 SGV---------------VSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHR-----L  269 (339)
T ss_pred             cce---------------EEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhH-----H
Confidence            543               5665555 58899999999999999999653433221 122678888888775444     4


Q ss_pred             eeeecccCcccC----CCCC---ccccccccccCeEEEEEccCCCeEEEec--CCceE-EE
Q 014644          369 LTRGLYRQAHEN----SSSG---HHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLF-FH  419 (421)
Q Consensus       369 l~~g~~d~~~iw----~~~~---~~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~-i~  419 (421)
                      |++.-.+|.++-    ...+   .......|.+-+..-.|......||+++  +..++ +|
T Consensus       270 L~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  270 LAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             HHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            666666665444    2222   1112223444445555644446688766  44434 55

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=1e-08  Score=84.61  Aligned_cols=159  Identities=11%  Similarity=0.027  Sum_probs=112.2

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      ...++.|++.+..++++ .+|.+.+-+.. ...+.+.     ++++.|...++-..|+...++++++|+.|+.+..||+|
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            35678899999999999 89998854443 1222221     25588999999999999888999999999999999999


Q ss_pred             cccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      ....     .+|..          -+-|...|.+|.-+| .+.+|++|+. ..|++||.++-++++..-....       
T Consensus       197 ~p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G-------  254 (339)
T KOG0280|consen  197 IPKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG-------  254 (339)
T ss_pred             CCcc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc-------
Confidence            4321     22221          123467888888886 5779999987 8999999996577765443332       


Q ss_pred             cccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEEecCCC
Q 014644          297 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iwd~~~~  336 (421)
                               +|+.+.++|.  ++.|+++-.+| .+|-+++.+
T Consensus       255 ---------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  255 ---------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             ---------ceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence                     3478999985  34454444443 556666654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2e-08  Score=90.03  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=94.9

Q ss_pred             CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE--EEcCCeEEEEECCcccccccchhhhccccc
Q 014644          158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAE  235 (421)
Q Consensus       158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~  235 (421)
                      ..++++.+++ +....-.        -...++|.++.|+|++ +.++.  |-.--.+.|+|++..-       +++.   
T Consensus       250 Eq~Lyll~t~-g~s~~V~--------L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-------v~df---  309 (566)
T KOG2315|consen  250 EQTLYLLATQ-GESVSVP--------LLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-------VFDF---  309 (566)
T ss_pred             cceEEEEEec-CceEEEe--------cCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-------eEeC---
Confidence            3468888887 3322211        1246899999999999 55443  4467789999998632       2222   


Q ss_pred             cCCCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEE
Q 014644          236 SHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS  311 (421)
Q Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                                ..++-+.+-|+|.|++|+.+   .- |.|-+||+.+ .+.+..+.....                 +-+.
T Consensus       310 ----------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~e  361 (566)
T KOG2315|consen  310 ----------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFE  361 (566)
T ss_pred             ----------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEE
Confidence                      14567899999999998764   23 9999999987 777777776554                 4589


Q ss_pred             EcCCCCEEEEeeC------CCeEEEEecCC
Q 014644          312 VSGDGLHFATGSY------SNLLRIFSHGV  335 (421)
Q Consensus       312 ~sp~~~~l~~~s~------dg~i~iwd~~~  335 (421)
                      |+|||++++|++.      |+.++||+...
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999999998874      78899999763

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2e-07  Score=83.60  Aligned_cols=323  Identities=17%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      -+-+.|  +|-|.+|+|--.-| |.+|-=.+  ..++..+.|++ |.-+.|+|.+..+..-+..+...-  -+ -+....
T Consensus       213 etyv~w--SP~GTYL~t~Hk~G-I~lWGG~~--f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~--~~-d~e~~~  283 (698)
T KOG2314|consen  213 ETYVRW--SPKGTYLVTFHKQG-IALWGGES--FDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVE--ED-DNEGQQ  283 (698)
T ss_pred             eeeEEe--cCCceEEEEEeccc-eeeecCcc--HHHHHhccCCC-ceeeecCCccceEEEecCCccccC--cc-cCCCce
Confidence            367899  78899999887654 78896333  23333444443 333334443333333222211100  00 112238


Q ss_pred             eeEEeecccceeeeeeeecCC--CCcce-EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          116 TKIANVGNSVHARCQKVYPHA--HDFNI-NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--h~~~v-~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      +.+||+.++   ...+.+ ..  ....+ --..||.|++++|--.-.+|.||+.. .   +..++.++.+    -..|..
T Consensus       284 l~IWDI~tG---~lkrsF-~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp-s---f~lld~Kslk----i~gIr~  351 (698)
T KOG2314|consen  284 LIIWDIATG---LLKRSF-PVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP-S---FMLLDKKSLK----ISGIRD  351 (698)
T ss_pred             EEEEEcccc---chhcce-eccCCCccccceEEeccCCceeEEeccceEEEEecC-c---eeeecccccC----CccccC
Confidence            999999998   555555 22  11222 23579999999998644689999876 2   2233223222    245788


Q ss_pred             EEEecCCCCeEEEEEcC-----CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-
Q 014644          193 AEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  266 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  266 (421)
                      ..|+|.+ ++||.-...     ..+.+-.+.+++.+    +.-..|             +-.-..+.|-.+|.+|+.-- 
T Consensus       352 FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nlf-------------nVsDckLhWQk~gdyLcvkvd  413 (698)
T KOG2314|consen  352 FSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNLF-------------NVSDCKLHWQKSGDYLCVKVD  413 (698)
T ss_pred             cccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccce-------------eeeccEEEeccCCcEEEEEEE
Confidence            8999998 888765421     35666666665433    222221             22335677888899998521 


Q ss_pred             ---------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEec
Q 014644          267 ---------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSH  333 (421)
Q Consensus       267 ---------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~  333 (421)
                               . ..+.|+.++...-++.........                ..++|-|.|..+++-+.   ..++.+|.+
T Consensus       414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tvsfY~~  477 (698)
T KOG2314|consen  414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTVSFYAV  477 (698)
T ss_pred             eeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccceeEEEe
Confidence                     1 346677776434445555443332                68999999887765543   457889988


Q ss_pred             CC-CCCceeEEecCCCCccceeeecCCcccccccceeeee---cccCc-ccCCCC--CccccccccccCeEEEEEccCCC
Q 014644          334 GV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG---LYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTN  406 (421)
Q Consensus       334 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~  406 (421)
                      ++ ......+..-.....+.+-|+|.  |+     +++.+   +..|. ..++..  +.......-....+.+.|.|.|+
T Consensus       478 e~~~~~~~lVk~~dk~~~N~vfwsPk--G~-----fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR  550 (698)
T KOG2314|consen  478 ETNIKKPSLVKELDKKFANTVFWSPK--GR-----FVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR  550 (698)
T ss_pred             ecCCCchhhhhhhcccccceEEEcCC--Cc-----EEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence            84 22222222333356678889988  55     55444   33344 444433  22221111223456789999999


Q ss_pred             eEEEec-------CCceEEEe
Q 014644          407 LIACAN-------GNSLFFHY  420 (421)
Q Consensus       407 ~la~~~-------~~~~~i~~  420 (421)
                      ++++++       +++.+||+
T Consensus       551 YvvT~ss~wrhk~d~GYri~t  571 (698)
T KOG2314|consen  551 YVVTSSSSWRHKVDNGYRIFT  571 (698)
T ss_pred             EEEEeeehhhhccccceEEEE
Confidence            999886       35666664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=8.4e-09  Score=86.86  Aligned_cols=242  Identities=9%  Similarity=0.046  Sum_probs=169.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .||.+.|++...  -|...-+++.+.|.++|||--.+ ++.                                       
T Consensus        21 eG~~d~vn~~~l--~~~e~gv~~~s~drtvrv~lkrds~q~---------------------------------------   59 (404)
T KOG1409|consen   21 EGSQDDVNAAIL--IPKEEGVISVSEDRTVRVWLKRDSGQY---------------------------------------   59 (404)
T ss_pred             cCchhhhhhhee--ccCCCCeEEccccceeeeEEecccccc---------------------------------------
Confidence            478888998877  46677899999999999997433 220                                       


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                |           ..+......+++++.+.++...|+.| +.|++.-+.+...-......    .....|.
T Consensus        60 ----------w-----------psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~----r~~~~h~  114 (404)
T KOG1409|consen   60 ----------W-----------PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL----KDYLAHQ  114 (404)
T ss_pred             ----------C-----------chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh----hhhhhhh
Confidence                      0           00002345678899999999999999 99999999876322222111    2336799


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..+..+-|+-.. ..+++.+.|..+.---.+.+......  .+.                ....++.+.-.  +...|..
T Consensus       115 ~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y--~~~----------------~~~t~~~~d~~--~~fvGd~  173 (404)
T KOG1409|consen  115 ARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGY--NFE----------------TPASALQFDAL--YAFVGDH  173 (404)
T ss_pred             cceeeEEecCCc-eeEEEeccccceEEEeeccCCcccce--Eee----------------ccCCCCceeeE--EEEeccc
Confidence            999999998776 88999999987764444444322110  011                11122222211  4445544


Q ss_pred             -CeEEEEECCC-CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                       |.|.+-.+.. .-.++.++.+|...+               .+++|.|..+.|.+|..|..+.+||+.-.......+++
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence             6665555432 145677888888765               79999999999999999999999999887777899999


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      |.+.|..+.....       ...|.+.+.||. .+|
T Consensus       239 h~~kV~~l~~~~~-------t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  239 HNDKVQALSYAQH-------TRQLISCGEDGGIVVW  267 (404)
T ss_pred             chhhhhhhhhhhh-------heeeeeccCCCeEEEE
Confidence            9999998887766       337888899998 888

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.07  E-value=9.2e-08  Score=78.07  Aligned_cols=202  Identities=11%  Similarity=-0.027  Sum_probs=121.2

Q ss_pred             CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccce
Q 014644           47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  126 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  126 (421)
                      ..+||.|+.-|...+|...+.+........+...|.         -+...+.+....++++    .+.++++.+++....
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---------~~~r~cd~~~~~~i~s----ndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---------LVKRYCDLKFPLNIAS----NDHTGKTMVVSGDSN  150 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchh---------hhhhhcccccceeecc----CCcceeEEEEecCcc
Confidence            457899999999999999877633222222222111         0000000000011111    122445554443311


Q ss_pred             eeeeeeecCCCCc--ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644          127 ARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  203 (421)
Q Consensus       127 ~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  203 (421)
                      ..      .-|..  .+.++++++|++++++- +...|..|.++..++.+.-+     .....++.-.+..|+... ..+
T Consensus       151 ~~------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~F  218 (344)
T KOG4532|consen  151 KF------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQF  218 (344)
T ss_pred             cc------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceE
Confidence            11      12322  38899999999999986 88899999998444333222     123334455788899987 899


Q ss_pred             EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--EEEEecC-CeEEEEECCCCCc
Q 014644          204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDST  280 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~-~~i~i~d~~~~~~  280 (421)
                      |++..||++.|||++.....    .....        ..-+.|.+.+..+.|++-|.  +|+.... +.+.+.|+++ ..
T Consensus       219 Av~~Qdg~~~I~DVR~~~tp----m~~~s--------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~  285 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATP----MAEIS--------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YV  285 (344)
T ss_pred             EEEecCCcEEEEEecccccc----hhhhc--------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-Cc
Confidence            99999999999999985432    11111        01133689999999998654  4444544 8999999997 55


Q ss_pred             ceeEEe
Q 014644          281 PVATFK  286 (421)
Q Consensus       281 ~~~~~~  286 (421)
                      -.+.+.
T Consensus       286 ~~q~I~  291 (344)
T KOG4532|consen  286 NHQVIV  291 (344)
T ss_pred             eeeEEe
Confidence            444443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=5.5e-07  Score=92.30  Aligned_cols=240  Identities=10%  Similarity=0.067  Sum_probs=129.4

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCC---CCCCcc-------CCCeeEEEEecCCCCeEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---SNMDDL-------TEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~---~~~~~~-------~~~v~~~~~~p~~~~~l~s~  206 (421)
                      .....+++.+++..|+.+  ..+.|+++|.. ++ .+.++....   ....+.       -.....++++|++..++++.
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~-~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFV-NE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecC-CC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            345788999888876665  56789999987 33 333331100   000110       12346899999542667777


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccC--CCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcce
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESH--GSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPV  282 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~  282 (421)
                      +.++.|++||..++...     .+.+.....  .........-.....++++|+|+.|+.+ .. +.|++||+.+ +...
T Consensus       702 ~~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~  775 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR  775 (1057)
T ss_pred             CCCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence            78899999998776421     111100000  0000000011346789999999866554 44 8999999975 3321


Q ss_pred             eEEeeccCcc-cccccccCC------CcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceee
Q 014644          283 ATFKIHEHLR-PKLCDLYNN------DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL  355 (421)
Q Consensus       283 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  355 (421)
                       .+.+..... ..+......      .......+++++++|..+++-+.++.|++||..++ . ...+.+...       
T Consensus       776 -~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg-~-v~tiaG~G~-------  845 (1057)
T PLN02919        776 -LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK-R-VTTLAGTGK-------  845 (1057)
T ss_pred             -EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC-e-EEEEeccCC-------
Confidence             111100000 000000000      00011258899999998888889999999998865 2 122221100       


Q ss_pred             ecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          356 QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       356 ~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                                     .|..||.       .   ..+.-.....++++++|+++++.+ ++.|++|+.
T Consensus       846 ---------------~G~~dG~-------~---~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        846 ---------------AGFKDGK-------A---LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             ---------------cCCCCCc-------c---cccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence                           0000110       0   001123566889999998777666 566888863

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.6e-07  Score=84.16  Aligned_cols=284  Identities=12%  Similarity=0.144  Sum_probs=157.2

Q ss_pred             CCCCceeeeccccccC----CCccccccccccccEEEEEEEEcCCCCeEEEEeCC-----------CcEEEeecCCceeE
Q 014644            6 TSHPEYRYKTEFQSHE----PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVK   70 (421)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d-----------~~v~lwd~~~~~~~   70 (421)
                      .|+|-|.+--.-++..    +.|+-++.+.|.+ |.-+.|  +|..++|+|=|..           ..++|||+.+|.++
T Consensus       219 SP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk  295 (698)
T KOG2314|consen  219 SPKGTYLVTFHKQGIALWGGESFDRIQRFYHPG-VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK  295 (698)
T ss_pred             cCCceEEEEEeccceeeecCccHHHHHhccCCC-ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchh
Confidence            3556666544444442    4677777788865 678899  7999999987632           57999999999843


Q ss_pred             E-eeecCCCCCccc-ccccccccceeeccCCCCce------eeee-----------ccccccc-ceeEEeeccccee---
Q 014644           71 K-IKEMDHFPFVSS-ENTLLAEKNFMNEHNPPSFA------HGYH-----------LEWTENM-ATKIANVGNSVHA---  127 (421)
Q Consensus        71 ~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~------~~~~-----------g~~~~~~-~~~~~~~~~~~~~---  127 (421)
                      + +...+.+-.++. +.|+..++.+-+...+.-..      .+..           -++...+ .+..|..++....   
T Consensus       296 rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parv  375 (698)
T KOG2314|consen  296 RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARV  375 (698)
T ss_pred             cceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceE
Confidence            3 333233333332 23444333332222211100      0011           1111111 4555654443211   


Q ss_pred             --------eeeeeecCCCCcceEEEeecCCCCEEEEE-c----C------CcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          128 --------RCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       128 --------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----d------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                              +.+++- +-|.-.=-.|.|-.+|.+|+.- +    .      ..+.|+.++...-.+..+        .-..
T Consensus       376 tL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--------elke  446 (698)
T KOG2314|consen  376 TLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKE  446 (698)
T ss_pred             EEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--------ecch
Confidence                    111111 1111111234566788888863 2    1      135566666333344433        2347


Q ss_pred             CeeEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          189 VITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      .|...+|-|.| ..++.-+   ...++.+|-+.+......+++.++.               ...+.+.|+|.|++++.+
T Consensus       447 ~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---------------~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  447 SVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---------------KFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             heeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc---------------cccceEEEcCCCcEEEEE
Confidence            78999999999 5555443   2357889988753222222233322               357889999999999865


Q ss_pred             ---cC-CeEEEEECCCCCcce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC------CCeEEEEecC
Q 014644          266 ---DY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG  334 (421)
Q Consensus       266 ---~~-~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~------dg~i~iwd~~  334 (421)
                         +. |.+.++|+.. .... .....|...                +.+-|.|.|+|+++++.      |.--+||+++
T Consensus       511 ~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a----------------t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDY-ADLKDTASPEHFAA----------------TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EecccccceEEEecch-hhhhhccCcccccc----------------ccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence               34 8999999863 1211 111122221                57899999999999886      3445666655

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1.4e-07  Score=87.09  Aligned_cols=167  Identities=11%  Similarity=0.077  Sum_probs=95.5

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--c--CCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      .+.++++.++   +..+..  ...+......|+|||+.|+..  .  +..|.++|+. ++...++        ..+....
T Consensus       214 ~Iyv~dl~tg---~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~L--------T~~~~~d  279 (419)
T PRK04043        214 TLYKYNLYTG---KKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQI--------TNYPGID  279 (419)
T ss_pred             EEEEEECCCC---cEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEEc--------ccCCCcc
Confidence            4445555444   333332  234455677899999887753  3  3567777876 4443332        2222233


Q ss_pred             eEEEEecCCCCeEEEEE-cCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          191 TSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~-~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ....|+||| +.|+..+ ..+  .|.+.|+..++..    ++...               +. ....|+|||++|+....
T Consensus       280 ~~p~~SPDG-~~I~F~Sdr~g~~~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        280 VNGNFVEDD-KRIVFVSDRLGYPNIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CccEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEc
Confidence            456899999 6666655 333  5777787765432    11111               01 12489999999875421


Q ss_pred             ----------CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-C--eEEEEecC
Q 014644          268 ----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHG  334 (421)
Q Consensus       268 ----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g--~i~iwd~~  334 (421)
                                ..|.+.|+.. +.. ..+......                ....|+|||+.|+..+.+ +  .+.+.++.
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~-g~~-~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNS-DYI-RRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCcccCCCCcEEEEEECCC-CCe-EECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence                      2577778764 433 333322111                357899999988766543 2  35566665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.03  E-value=2.7e-09  Score=98.42  Aligned_cols=242  Identities=13%  Similarity=0.146  Sum_probs=149.4

Q ss_pred             eEEEeecCC--CCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          141 INSISNNSD--CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       141 v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      |-...|+|.  -.+-+.+ ....-.+|++.... +.+..      .+.+|+..|+.+-|+|+.+..+++++.|-.+..||
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd  143 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD  143 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeee
Confidence            334455543  2233333 55556688876322 23332      24789999999999999989999999999999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      +++....   ...+..             -......++|+.....+.+.+. ..|++||++..+.++..+++|...+   
T Consensus       144 ~rSp~~p---~ys~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v---  204 (1081)
T KOG0309|consen  144 MRSPHRP---FYSTSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV---  204 (1081)
T ss_pred             ccCCCcc---eeeeec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence            9986532   222221             1346678999975444444444 8899999998888999998876544   


Q ss_pred             ccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc----cccceee
Q 014644          296 CDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR----SSLSNLT  370 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~  370 (421)
                                  .++.|..- ...+.+.+.||+|+.||................++..-.+.|-..|..    .++..+-
T Consensus       205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~  272 (1081)
T KOG0309|consen  205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP  272 (1081)
T ss_pred             ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeee
Confidence                        45555432 335778999999999998876444444444455555555555422220    0001111


Q ss_pred             eecccCc-ccC---CCCCccccccccccCeEEEEEccCCC----------eEEEec-CCceEEE
Q 014644          371 RGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH  419 (421)
Q Consensus       371 ~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~~----------~la~~~-~~~~~i~  419 (421)
                      .-..+.. ..|   +....+....||...|...-|-..+.          .|++=+ +-.+++|
T Consensus       273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            1112222 445   33345556678888777766654433          355555 4457777

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=3.4e-09  Score=106.62  Aligned_cols=193  Identities=12%  Similarity=0.166  Sum_probs=128.2

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .|.++.-  +|...+.+||+.||.|++|....+..........+..            +..+.++..+.....+  +.++
T Consensus      2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~------------vtr~~f~~qGnk~~i~--d~dg 2273 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR------------VTRSRFNHQGNKFGIV--DGDG 2273 (2439)
T ss_pred             ceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch------------hhhhhhcccCCceeee--ccCC
Confidence            4444444  6778899999999999999988776222211112232            2222222222111111  2355


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE----cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      .+.+|....    ++.... +.|.....+..|-.  ..++++    +++.+.+||........-+       -..|.+.+
T Consensus      2274 ~l~l~q~~p----k~~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~ga 2339 (2439)
T KOG1064|consen 2274 DLSLWQASP----KPYTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGGA 2339 (2439)
T ss_pred             ceeecccCC----cceecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCCc
Confidence            678887762    555555 78998899998874  666662    5889999997633322211       15688999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      +++++-|.. ++|++|+.+|.|++||++..++.    +.|..                      +. ...++++|+. |.
T Consensus      2340 T~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~----------------------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2340 TVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA----------------------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             eEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh----------------------hh-hhheeeccCcccc
Confidence            999999998 99999999999999999986543    32221                      33 4668888876 99


Q ss_pred             EEEEECCCCCcceeEEe
Q 014644          270 LKLWDIRMDSTPVATFK  286 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~  286 (421)
                      ++||++.. -..+..+.
T Consensus      2392 ikIw~~s~-~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSE-FGLLHTFP 2407 (2439)
T ss_pred             eEEEEccc-cchhhcCc
Confidence            99999975 44454443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=1.1e-06  Score=77.56  Aligned_cols=149  Identities=20%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCC-cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~-~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .+...++|...|.-..+  ..+++-++.|..|| .+-|+|..+++.+++                               
T Consensus       351 ~~~iqv~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-------------------------------  397 (668)
T COG4946         351 GYSIQVGKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-------------------------------  397 (668)
T ss_pred             CeeEEcCCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEe-------------------------------
Confidence            34445666666666666  34455666777776 677777666553333                               


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                                     ...-+.|.++..+++|++++.+ +...|.+.|++ ++. ++.++     
T Consensus       398 -------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngn-v~~id-----  439 (668)
T COG4946         398 -------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGN-VRLID-----  439 (668)
T ss_pred             -------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCC-eeEec-----
Confidence                                           3445679999999999999999 88889899998 333 33332     


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCC----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                       ....+-|+.+.|+|++ ..+|.+--+|    .|+++|+..++..    .....              ...-.+-+|.||
T Consensus       440 -kS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d  499 (668)
T COG4946         440 -KSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPD  499 (668)
T ss_pred             -ccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCC
Confidence             3455779999999999 9998876554    6899999987543    11111              234456789999


Q ss_pred             CCEEEE
Q 014644          259 GQHLLS  264 (421)
Q Consensus       259 ~~~l~~  264 (421)
                      +++|.-
T Consensus       500 ~ryLYf  505 (668)
T COG4946         500 GRYLYF  505 (668)
T ss_pred             CcEEEE
Confidence            998763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.02  E-value=7.3e-07  Score=89.77  Aligned_cols=312  Identities=12%  Similarity=0.066  Sum_probs=164.3

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee-eeecccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-GYHLEWT  111 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  111 (421)
                      ...|.+++|  +||+.+|+....+++|.+-.-+-..+...   .....      ..+......+.+.+..+. --.++..
T Consensus       120 d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~---~l~~~------~~~~~~~VsVGWGkKeTQF~Gs~gK~  188 (928)
T PF04762_consen  120 DSGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEV---PLDSD------DFGESKHVSVGWGKKETQFHGSAGKA  188 (928)
T ss_pred             cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEe---ecCcc------ccCCCceeeeccCcccCccCcchhhh
Confidence            568999999  79999999999999999876332111111   11110      001122333333322221 1111110


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----C--CcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D--LRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----d--~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                      .-.  .+-+....  ......+ . +...-..++|-.||+++|++ -    .  +.+|||+-+  +.+..+-       +
T Consensus       189 aa~--~~~~p~~~--~~d~~~~-s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stS-------E  253 (928)
T PF04762_consen  189 AAR--QLRDPTVP--KVDEGKL-S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTS-------E  253 (928)
T ss_pred             hhh--hccCCCCC--ccccCcc-c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEecc-------c
Confidence            000  00000000  0001112 2 44455689999999999985 3    2  579999976  5444332       2


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEc---CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .-.+--.+++|.|.| ++||+.-.   ...|.+|.-+ |-..    ..|.. .        +......|..+.|++|+..
T Consensus       254 ~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErN-GLrh----geF~l-~--------~~~~~~~v~~l~Wn~ds~i  318 (928)
T PF04762_consen  254 PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERN-GLRH----GEFTL-R--------FDPEEEKVIELAWNSDSEI  318 (928)
T ss_pred             cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecC-CcEe----eeEec-C--------CCCCCceeeEEEECCCCCE
Confidence            222333568999999 99988764   3456666633 3211    11211 0        0112467899999999999


Q ss_pred             EEEecCCeEEEEECCCCCccee--EEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCC
Q 014644          262 LLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       262 l~~~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      ||......|.+|-..+ -....  .+.......              +..+.|+|. ...|...+.+|.+..+++.-.  
T Consensus       319 LAv~~~~~vqLWt~~N-YHWYLKqei~~~~~~~--------------~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~--  381 (928)
T PF04762_consen  319 LAVWLEDRVQLWTRSN-YHWYLKQEIRFSSSES--------------VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD--  381 (928)
T ss_pred             EEEEecCCceEEEeeC-CEEEEEEEEEccCCCC--------------CCceEECCCCCCEEEEEecCCcEEEEEEEEE--
Confidence            9987655699999865 33221  122111110              034899994 556777777787766654421  


Q ss_pred             ceeEEecCCCCccceeeecCCcccccccceeeeecccCc--ccC--C---CCCcc-ccccccccCeEEEEEccCCCeEEE
Q 014644          339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--S---SSGHH-ELSYNLSSKLLHLAWHPTTNLIAC  410 (421)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~---~~~~~-~~~~~~~~~v~~~~~spd~~~la~  410 (421)
                       ...-.+.....                 .-..+--||.  ++-  .   ...++ ...+.....|.+++|++++..+|+
T Consensus       382 -v~~s~~~~~~D-----------------~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  382 -VSRSPGSSPND-----------------NGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             -EEecCCCCccC-----------------ceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence             00000000000                 1112222232  111  1   11111 123356788999999999987666


Q ss_pred             ec-CCceEEEe
Q 014644          411 AN-GNSLFFHY  420 (421)
Q Consensus       411 ~~-~~~~~i~~  420 (421)
                      -. ++.+.+|.
T Consensus       444 l~~d~~l~~~~  454 (928)
T PF04762_consen  444 LTSDGSLSIYE  454 (928)
T ss_pred             EECCCCEEEEE
Confidence            65 55588875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=3e-09  Score=106.99  Aligned_cols=189  Identities=12%  Similarity=0.075  Sum_probs=139.6

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..+-..|.++.-+|...+.++| .||.|++|... .++.+.+.+      ......|+.+.|+.+| +.+..+..||.+.
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~-~~~~v~~~r------t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWG-HGQQVVCFR------TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEecc-CCCeEEEee------ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence            4566778888889999999999 99999999998 555555442      2233889999999999 8898899999999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCCCCcceeEEeecc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      +|.+....     ...+             ..|+.....+.|-.  ..++++   ++ +.+.+||.......-..-..|.
T Consensus      2277 l~q~~pk~-----~~s~-------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTSW-------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             ecccCCcc-----eecc-------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            99987321     1223             33466777888874  566653   35 8999999864333222236677


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccccee
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  369 (421)
                      +..               +.+++.|..+.|++|+.+|.|++||++.. ++...++.       +. .         ..++
T Consensus      2337 ~ga---------------T~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~-------~~-~---------~~~f 2383 (2439)
T KOG1064|consen 2337 GGA---------------TVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA-------LD-T---------REYF 2383 (2439)
T ss_pred             CCc---------------eEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh-------hh-h---------hhee
Confidence            654               78999999999999999999999999875 44444443       11 1         2389


Q ss_pred             eeecccCc-ccCCCCC
Q 014644          370 TRGLYRQA-HENSSSG  384 (421)
Q Consensus       370 ~~g~~d~~-~iw~~~~  384 (421)
                      .+|+..|. +||+..+
T Consensus      2384 ~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             eccCcccceEEEEccc
Confidence            99999999 9995443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.97  E-value=4.7e-07  Score=79.83  Aligned_cols=163  Identities=11%  Similarity=0.062  Sum_probs=117.0

Q ss_pred             CCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC-eEEEEECCcccccccch
Q 014644          149 DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSA  227 (421)
Q Consensus       149 ~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~  227 (421)
                      +|.+++.-..|...+.+.. .+-.++         -++...|.-..+.-+. .-++.|..|| .+-++|.+.+...    
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~-~~~~iq---------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k----  395 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPW-DGYSIQ---------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK----  395 (668)
T ss_pred             CCcEEEEEecCcEEEECCC-CCeeEE---------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE----
Confidence            6888888777888888876 343343         3466778888888887 6888899998 8999999987632    


Q ss_pred             hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCccee
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD  306 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (421)
                      +....              -+.|.++..+|+|++++.+.+ ..|.+.|+.+ +.+...-+.....+              
T Consensus       396 r~e~~--------------lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lI--------------  446 (668)
T COG4946         396 RIEKD--------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLI--------------  446 (668)
T ss_pred             EeeCC--------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeEeccccccee--------------
Confidence            22122              467999999999999999988 8999999987 66544333344433              


Q ss_pred             eeEEEEcCCCCEEEEeeCCC----eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          307 KFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       307 ~~~~~~sp~~~~l~~~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                       +.+.|+|+++++|.+--+|    .|+++|+..+.  ........+...+.+|.|+
T Consensus       447 -tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT~ta~DfsPaFD~d  499 (668)
T COG4946         447 -TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTTPTAYDFSPAFDPD  499 (668)
T ss_pred             -EEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecCCcccccCcccCCC
Confidence             7999999999999876555    69999998752  2222223333344455444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=5.2e-06  Score=73.68  Aligned_cols=258  Identities=11%  Similarity=0.054  Sum_probs=136.8

Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecCCC-
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPS-  181 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~~~-  181 (421)
                      +.+.+.|..+.   +.+.++..+....  .+ ++||++.|+.+ .          +..|.+||.. +.+....+.+.+. 
T Consensus        27 ~~v~ViD~~~~---~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAG---RVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCC---EEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcEEeEEccCCCc
Confidence            56777887776   6666663333332  24 89999998876 5          6899999999 5555554432211 


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEE-c-CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSS-S-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~-~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      .+. .......++++||| ++|+... . +..|.+.|+.+++..    ..+..              .....-...+ +.
T Consensus       100 ~~~-~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv----~ei~v--------------p~~~~vy~t~-e~  158 (352)
T TIGR02658       100 RFL-VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFV----RMMDV--------------PDCYHIFPTA-ND  158 (352)
T ss_pred             hhh-ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEE----EEEeC--------------CCCcEEEEec-CC
Confidence            000 12334578899999 8777665 4 789999999997654    22221              1111111111 12


Q ss_pred             CEEEEecCCeEEEEECCCCCccee----EEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecC
Q 014644          260 QHLLSRDYMNLKLWDIRMDSTPVA----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       260 ~~l~~~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~  334 (421)
                      .+++.+.||......+...++...    .+....            +.++  ..-.|.+ +|+++....+ |.|++.|+.
T Consensus       159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~------------~~v~--~rP~~~~~dg~~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED------------EYLI--NHPAYSNKSGRLVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             ccEEEeecCceEEEEecCCCceEEeeeeeecCCc------------cccc--cCCceEcCCCcEEEEecC-CeEEEEecC
Confidence            222222233333322222222110    011111            1111  1124455 8888776666 999999975


Q ss_pred             CCCCc----eeEEec-------CCCCccceeeecCCcccccccceeee-e--c-----ccCc-ccC---CCCCccccccc
Q 014644          335 VGSAG----GITVEA-------GKNENRKPILQAAPRARRSSLSNLTR-G--L-----YRQA-HEN---SSSGHHELSYN  391 (421)
Q Consensus       335 ~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~-g--~-----~d~~-~iw---~~~~~~~~~~~  391 (421)
                      .....    ...+..       ..+....++++++  ++     .+.. .  .     .++. .+|   .........+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g~-----~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--RD-----RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             CCcceecceeeeccccccccccCCCcceeEEEcCC--CC-----EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence            43211    111111       1122234667766  33     3333 2  1     2333 566   22223333334


Q ss_pred             cccCeEEEEEccCCC-eEEEec--CCceEEEeC
Q 014644          392 LSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA  421 (421)
Q Consensus       392 ~~~~v~~~~~spd~~-~la~~~--~~~~~i~~~  421 (421)
                      ....+..++++||++ .|.+.+  ++.+.++++
T Consensus       297 vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       297 LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            566889999999999 777666  456888764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=4.2e-07  Score=83.87  Aligned_cols=170  Identities=14%  Similarity=0.049  Sum_probs=103.1

Q ss_pred             ceEEEeecCCCCE-EEE-E-c--CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC--CeE
Q 014644          140 NINSISNNSDCET-FVS-A-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFV  212 (421)
Q Consensus       140 ~v~~l~~~~~~~~-l~s-~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--~~v  212 (421)
                      ......|+|||+. ++. . .  +..|.++|+. +++...+.        ...+......|+|||..++++.+.+  ..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt--------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIA--------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEe--------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            6778999999984 553 4 3  4568888987 44433332        2334556778999993344444434  467


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeEEeec
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      .++|+..+...    ++...              ........|+|||+.|+..++    ..|++.|+.. ++..+ +...
T Consensus       260 y~~dl~~g~~~----~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r-lt~~  319 (419)
T PRK04043        260 YLYDTNTKTLT----QITNY--------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSVEQ-VVFH  319 (419)
T ss_pred             EEEECCCCcEE----EcccC--------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCeEe-CccC
Confidence            77788765422    21111              222345679999998876543    3677888864 44322 2111


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---------CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---------NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      ..                 ....|+|||++|+..+..         ..|++.|+.++..  ..+... .......|+|+
T Consensus       320 g~-----------------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPD  378 (419)
T PRK04043        320 GK-----------------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSD  378 (419)
T ss_pred             CC-----------------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCC
Confidence            11                 124899999998866643         3688888877632  333332 23446788888

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=1.1e-08  Score=94.57  Aligned_cols=268  Identities=15%  Similarity=0.135  Sum_probs=166.3

Q ss_pred             CCccccccccccc--cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644           22 PEFDYLKSLEIEE--KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        22 ~~~~~~~~~~h~~--~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      ..|..-+-+.|..  .|..+.|++++.-.+-++..+...-.+|++....-                              
T Consensus        54 ~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~------------------------------  103 (1081)
T KOG0309|consen   54 DPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS------------------------------  103 (1081)
T ss_pred             CCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc------------------------------
Confidence            3444444455543  57888998877777777777777778888765321                              


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~  177 (421)
                                                  ..+..++.+|...|+.+.|+|+.. .++++ .|..+..||++.....+... 
T Consensus       104 ----------------------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-  154 (1081)
T KOG0309|consen  104 ----------------------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-  154 (1081)
T ss_pred             ----------------------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-
Confidence                                        122223379999999999999654 66777 89999999999666555443 


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                            ..-......++|+-..++.+| .+....|++||++.+...   ...+             ++|...++.++|..
T Consensus       155 ------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---l~s~-------------K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  155 ------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---LCSL-------------KGHVSSVNSIDFNR  211 (1081)
T ss_pred             ------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---eEEe-------------cccceeeehHHHhh
Confidence                  222344578899987745554 456678999999987533   1222             23467788888875


Q ss_pred             C-CCEEEEe-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEE---------eeC
Q 014644          258 D-GQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFAT---------GSY  324 (421)
Q Consensus       258 ~-~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~---------~s~  324 (421)
                      - ...+.+. .+++|+.||.....+.-........++               +...+-|=  |.++.-         ---
T Consensus       212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c  276 (1081)
T KOG0309|consen  212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRC  276 (1081)
T ss_pred             hhhhhhcccCCCCceeeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccc
Confidence            3 2234444 559999999975322222111112211               34444442  222221         111


Q ss_pred             CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcc---cccccceeeeecccCc-ccCCCCCcc
Q 014644          325 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA---RRSSLSNLTRGLYRQA-HENSSSGHH  386 (421)
Q Consensus       325 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~g~~d~~-~iw~~~~~~  386 (421)
                      +.....|+..++...+..+.||.+.|....|...+..   ...-.-.|++-+.|.. ++|..+..+
T Consensus       277 ~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i  342 (1081)
T KOG0309|consen  277 ENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI  342 (1081)
T ss_pred             cchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence            3334456666666778999999999987777543220   0011457999999999 999554433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=2e-08  Score=86.35  Aligned_cols=154  Identities=14%  Similarity=0.120  Sum_probs=99.3

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec-ccccccceeEEe
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIAN  120 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  120 (421)
                      +++++++|.+..++...+.++....  .+.......+.            +-.++.+....+...-+ .......+.+|.
T Consensus        71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~------------~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK------------RPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc------------CcceeeeeeccceEEEEeecCCceeeeeec
Confidence            5678889988888887777765443  22222111111            11111111111111111 111122455665


Q ss_pred             ecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC
Q 014644          121 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  199 (421)
Q Consensus       121 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  199 (421)
                      ...+   .+...  -||-..+..++|+||+++|+++ .|..|++-... ....+..+      .-||+.-|..++.-++ 
T Consensus       139 ~~~~---~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~-  205 (390)
T KOG3914|consen  139 ADSG---RCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN-  205 (390)
T ss_pred             cccc---Ccchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC-
Confidence            5542   45444  4999999999999999999999 99999998776 22222221      3689999999999887 


Q ss_pred             CCeEEEEEcCCeEEEEECCccccc
Q 014644          200 CNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       200 ~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                       ..|++++.|++|++||+.+++..
T Consensus       206 -~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  206 -YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -ceeeecCCCCcEEEEecccCCcc
Confidence             56999999999999999998765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.90  E-value=2.3e-06  Score=76.24  Aligned_cols=235  Identities=9%  Similarity=0.145  Sum_probs=134.5

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCC---------------cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644           35 KINRVRWCAAPNGSMFILSTNDK---------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~---------------~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      .|.-+.|  +|++.+|.+-+...               .+.+||+.++.+...........+-   |             
T Consensus        73 ~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~---W-------------  134 (561)
T COG5354          73 DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG---W-------------  134 (561)
T ss_pred             Cceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc---c-------------
Confidence            4677888  78899999876544               4999999988743332211111000   0             


Q ss_pred             CCceeeeeccc---ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEE-----E-cCCcEEEEeCCC
Q 014644          100 PSFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVS-----A-DDLRINLWNLEI  168 (421)
Q Consensus       100 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s-----~-~d~~i~lwd~~~  168 (421)
                      +-.+|..+-..   -.+..+.+.++.......+.+.+   -...|....|+|.  +..|+.     . .++++++|.+..
T Consensus       135 p~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~  211 (561)
T COG5354         135 PVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK  211 (561)
T ss_pred             ceeeeeecchhhhhhccCeEEEEecCCccccCchhhc---cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence            00111111111   01123445543222111222233   1356888899985  344554     3 688999999973


Q ss_pred             CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-----------cCCeEEEEECCcccccccchhhhccccccC
Q 014644          169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----------SRGFVRLVDMRQSALCDHSARILRDAAESH  237 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~  237 (421)
                      +. .+.+.     ++  ....-..+.|++.| .+|+.--           ....+.++++......     .-       
T Consensus       212 ~s-~l~tk-----~l--fk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-----V~-------  270 (561)
T COG5354         212 NS-VLVTK-----NL--FKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-----VE-------  270 (561)
T ss_pred             CC-eeeee-----ee--EeecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeecccccc-----ee-------
Confidence            33 33221     11  12223467888888 5554321           1245777777743321     11       


Q ss_pred             CCcccccccccceeEEEEcCCCCEEEEec--C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          238 GSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                            ....++|...+|.|.++.+++.+  . -.+.++|++.  .....+  .+...               ..+.|+|
T Consensus       271 ------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~--Pe~~r---------------NT~~fsp  325 (561)
T COG5354         271 ------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYF--PEQKR---------------NTIFFSP  325 (561)
T ss_pred             ------ccccccceeeeecccCCceeEEecccccceeeccccc--ceEEec--CCccc---------------ccccccC
Confidence                  01267999999999988877643  3 7899999974  443333  33322               4689999


Q ss_pred             CCCEEEEeeCC---CeEEEEecCCC
Q 014644          315 DGLHFATGSYS---NLLRIFSHGVG  336 (421)
Q Consensus       315 ~~~~l~~~s~d---g~i~iwd~~~~  336 (421)
                      .+++++.++.|   |.|-+||....
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCc
Confidence            99999987764   67999997644

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.85  E-value=2.7e-06  Score=75.86  Aligned_cols=233  Identities=10%  Similarity=0.049  Sum_probs=135.5

Q ss_pred             ceEEEeecCCCCEEEEE-c---------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-EEEEecCCCCe
Q 014644          140 NINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNL  202 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~---------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~  202 (421)
                      .|..+.|+|.+++|.+= .               +..+.+||+. ++.++..+...     ....-.+ -+.|+-+. ++
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf~~~-----~q~~~~Wp~~k~s~~D-~y  145 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSFNGI-----SQPYLGWPVLKFSIDD-KY  145 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeecccc-----CCcccccceeeeeecc-hh
Confidence            36666777777777762 2               2369999999 67777654211     1111134 56788887 66


Q ss_pred             EEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEE-----ecC-CeEEEEE
Q 014644          203 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLS-----RDY-MNLKLWD  274 (421)
Q Consensus       203 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~-~~i~i~d  274 (421)
                      +|-. ....+.|+++ ++.......+.+.               ...+....|+|.+  ..|+.     ... +++++|.
T Consensus       146 ~ARv-v~~sl~i~e~-t~n~~~~p~~~lr---------------~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s  208 (561)
T COG5354         146 VARV-VGSSLYIHEI-TDNIEEHPFKNLR---------------PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS  208 (561)
T ss_pred             hhhh-ccCeEEEEec-CCccccCchhhcc---------------ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence            6554 3456899997 4332221122222               2468888999963  34442     233 8899999


Q ss_pred             CCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-----------CCCeEEEEecCCCCCceeEE
Q 014644          275 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----------YSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-----------~dg~i~iwd~~~~~~~~~~~  343 (421)
                      +.. +.++..-..-....               ..+.|.+.|++|+.-.           ....++|+++...  -....
T Consensus       209 Ip~-~s~l~tk~lfk~~~---------------~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~  270 (561)
T COG5354         209 IPK-NSVLVTKNLFKVSG---------------VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVE  270 (561)
T ss_pred             ccC-CCeeeeeeeEeecc---------------cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--cccee
Confidence            974 55443322111110               4789999999876321           1356889998833  33333


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec----CCceEE
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN----GNSLFF  418 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~----~~~~~i  418 (421)
                      ..-.++|-...|.|...+     -.+++|..... .+++..+.+. .......=..+.|+|.+++++.++    .+++-+
T Consensus       271 ~~~~~pVhdf~W~p~S~~-----F~vi~g~~pa~~s~~~lr~Nl~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i  344 (561)
T COG5354         271 KDLKDPVHDFTWEPLSSR-----FAVISGYMPASVSVFDLRGNLR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEI  344 (561)
T ss_pred             ccccccceeeeecccCCc-----eeEEecccccceeecccccceE-EecCCcccccccccCcccEEEEecCCccccceEE
Confidence            366899999999888322     24566666666 5553332221 122233334567788888777766    344555


Q ss_pred             Ee
Q 014644          419 HY  420 (421)
Q Consensus       419 ~~  420 (421)
                      |+
T Consensus       345 ~~  346 (561)
T COG5354         345 FD  346 (561)
T ss_pred             ec
Confidence            54

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.85  E-value=5.1e-07  Score=73.83  Aligned_cols=172  Identities=13%  Similarity=0.012  Sum_probs=114.9

Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      ...+|+.| ..|...+|...+++...++.       ..|...|.-+.=.-+....+..++.|.++++.++..+...    
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----  151 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----  151 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeee-------cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence            44578887 99999999998655555444       2233323222111111144666788999999988765321    


Q ss_pred             hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE-eeccCcccccccccCCCcce
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIF  305 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (421)
                        +..|.         .  .-.+..+++++|++++++.++ ..|..|.+..+++.+... ......           .- 
T Consensus       152 --~~~h~---------~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-----------~g-  206 (344)
T KOG4532|consen  152 --FAVHN---------Q--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-----------HG-  206 (344)
T ss_pred             --ceeec---------c--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-----------Cc-
Confidence              22220         0  123789999999999998877 999999998766554442 222211           11 


Q ss_pred             eeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc----eeEEecCCCCccceeeecC
Q 014644          306 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG----GITVEAGKNENRKPILQAA  358 (421)
Q Consensus       306 ~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~  358 (421)
                        ++.+|+.....+|++++||++.|||++....+    ...-..|.+.++.+.|++.
T Consensus       207 --F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~  261 (344)
T KOG4532|consen  207 --FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY  261 (344)
T ss_pred             --eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence              57899999999999999999999999976433    2233457888999999975

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.84  E-value=3.6e-06  Score=84.88  Aligned_cols=246  Identities=15%  Similarity=0.127  Sum_probs=152.7

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEE----eCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLW----NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lw----d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      ..+.|.++.+.++...++.+ .+|.|.+.    +..  ...+.+.       ..-...|.+++||||+ .+|+..+.+++
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~--~~~~E~V-------G~vd~GI~a~~WSPD~-Ella~vT~~~~  143 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPD--EDEIEIV-------GSVDSGILAASWSPDE-ELLALVTGEGN  143 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC--CceeEEE-------EEEcCcEEEEEECCCc-CEEEEEeCCCE
Confidence            45679999999999888888 99999998    444  2333332       2334679999999999 99999998988


Q ss_pred             EEEEECCccccc--------------------ccchhhhccccccC---------C----CcccccccccceeEEEEcCC
Q 014644          212 VRLVDMRQSALC--------------------DHSARILRDAAESH---------G----SKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       212 v~iwd~~~~~~~--------------------~~~~~~~~~h~~~~---------~----~~~~~~~~~~~v~~~~~s~~  258 (421)
                      |.+.+- +....                    .+....|.+ ..+.         .    ....+. ....-..++|-.|
T Consensus       144 l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G-s~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD  220 (928)
T PF04762_consen  144 LLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG-SAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD  220 (928)
T ss_pred             EEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCc-chhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence            876532 11110                    000111111 0000         0    011122 4446678999999


Q ss_pred             CCEEEEec------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeE
Q 014644          259 GQHLLSRD------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLL  328 (421)
Q Consensus       259 ~~~l~~~~------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i  328 (421)
                      |+|+|+.+      . +.+++|+-+  |.....-..-.+..               ..++|-|.|.+||+...   ...|
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe---------------~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLE---------------GALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCcc---------------CCccCCCCCCEEEEEEEcCCCcEE
Confidence            99999642      1 579999964  55433332222211               47899999999988764   4568


Q ss_pred             EEEecCCCCCceeEEe--cCCCCccceeeecCCcccccccceeeeecccCcccCCCCCcc----ccc-cccccCeEEEEE
Q 014644          329 RIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHH----ELS-YNLSSKLLHLAW  401 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~----~~~-~~~~~~v~~~~~  401 (421)
                      .+|.-+.-......++  .....+..+.|+++       ...||....|...+|..+.--    ... ......+..+.|
T Consensus       284 vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d-------s~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~W  356 (928)
T PF04762_consen  284 VFFERNGLRHGEFTLRFDPEEEKVIELAWNSD-------SEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKW  356 (928)
T ss_pred             EEEecCCcEeeeEecCCCCCCceeeEEEECCC-------CCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence            8888553322233343  34567899999998       448888777777999544321    111 122234555999


Q ss_pred             ccCCCe-EEEecC-CceEEE
Q 014644          402 HPTTNL-IACANG-NSLFFH  419 (421)
Q Consensus       402 spd~~~-la~~~~-~~~~i~  419 (421)
                      +|..+. |.+.+. +.+..+
T Consensus       357 dpe~p~~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  357 DPEKPLRLHVLTSNGQYEIY  376 (928)
T ss_pred             CCCCCCEEEEEecCCcEEEE
Confidence            997654 666654 555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=1.5e-06  Score=72.19  Aligned_cols=180  Identities=18%  Similarity=0.174  Sum_probs=108.4

Q ss_pred             eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-----CCeEEEEEcCCeEEE
Q 014644          141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVRL  214 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~~d~~v~i  214 (421)
                      =+-++||||+.+||.+ ..|+|+++|+. +..+. .+.........-..+|.++.|.+..     ...|+.-..+|.++=
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecc-cceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            4678999999999999 99999999998 44444 2211110112234567777776532     235677778888887


Q ss_pred             EECCccccc-ccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-C----------eEEEEECCCCCcc
Q 014644          215 VDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M----------NLKLWDIRMDSTP  281 (421)
Q Consensus       215 wd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~----------~i~i~d~~~~~~~  281 (421)
                      |-+..+... .+..+.+..          ...+...|.++.++|..++|+.|+ . .          -+..|.+-. +.+
T Consensus       124 y~vs~gt~q~y~e~hsfsf----------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~P  192 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSF----------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DSP  192 (282)
T ss_pred             EEEEcccCCcceeeEEEEe----------cccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC-CCC
Confidence            765432110 000111111          122356899999999988887652 1 1          356676643 333


Q ss_pred             eeEE-eeccCccc---------cccc-------ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          282 VATF-KIHEHLRP---------KLCD-------LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       282 ~~~~-~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .... ...+..+.         ++..       ..+.+.+   ..|+.||||+.||+.+.+|.|.+|++..-
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cEEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            2221 11101000         0000       1234444   69999999999999999999999999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=7.3e-06  Score=68.15  Aligned_cols=229  Identities=16%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             EeecCCCCEEEEEcCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccc
Q 014644          144 ISNNSDCETFVSADDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  222 (421)
Q Consensus       144 l~~~~~~~~l~s~~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~  222 (421)
                      ++.+.+|+.||.-.|..|.|=..+.+-. .+....+    .+.-...=+-++|+||+ .+||.+...|+|+++|+....+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV----pkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l   77 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQV----PKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL   77 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEec----CCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee
Confidence            5667899998888888888876652211 1111111    11222334679999999 9999999999999999886432


Q ss_pred             cccchhhhccccccCCCcccccccccceeEEEEcCCC-------CEEEEecCCeEEEEECCC----CCcceeEEeeccCc
Q 014644          223 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSRDYMNLKLWDIRM----DSTPVATFKIHEHL  291 (421)
Q Consensus       223 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~~i~i~d~~~----~~~~~~~~~~~~~~  291 (421)
                      .     .+..     .. .........|.++.|.+..       ++|+..-.|.++=|-+..    .-+....+..... 
T Consensus        78 f-----~I~p-----~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-  145 (282)
T PF15492_consen   78 F-----VIPP-----AM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-  145 (282)
T ss_pred             E-----EcCc-----cc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-
Confidence            1     1111     00 0111224567777776532       344444336666555421    1122222222111 


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CC----------eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN----------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                                 ...+|.++.++|..++|+.|+. ..          -+.-|.+-++..-........+.+....   .  
T Consensus       146 -----------yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~---~--  209 (282)
T PF15492_consen  146 -----------YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS---K--  209 (282)
T ss_pred             -----------CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc---c--
Confidence                       1113478999999888776653 21          2455665554222222111111111000   0  


Q ss_pred             ccccccceeeeecccCcccCCCCC--ccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          361 ARRSSLSNLTRGLYRQAHENSSSG--HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d~~~iw~~~~--~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                                   ..  .+|....  ...........|..|+.||||..||+.. ++.|.+|.
T Consensus       210 -------------~~--~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  210 -------------RR--GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             -------------cc--ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence                         00  1111000  0011112356789999999999999998 78899996

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.8e-08  Score=90.19  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=122.9

Q ss_pred             eeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          130 QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       130 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      +..+ .||.+.|+.++--.+.+-++++ .|.+|++|.++..+....+-. -+.+...|+.+|.++.|-.+. +.++  +.
T Consensus       728 L~nf-~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-CQfTY~aHkk~i~~igfL~~l-r~i~--Sc  802 (1034)
T KOG4190|consen  728 LCNF-TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-CQFTYQAHKKPIHDIGFLADL-RSIA--SC  802 (1034)
T ss_pred             eecc-cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-eeeEhhhccCcccceeeeecc-ceee--ec
Confidence            3455 7999999999877777777887 999999999985544332110 012457899999999999987 7776  55


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEe-cC-CeEEEEECCCCCcceeE
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DY-MNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~-~~-~~i~i~d~~~~~~~~~~  284 (421)
                      ||-|.+||.--++...   +....    +        ..+.+..+..-|+  ...+.++ +. .+++++|.+. .+.+..
T Consensus       803 D~giHlWDPFigr~La---q~~da----p--------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E  866 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLA---QMEDA----P--------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCE  866 (1034)
T ss_pred             cCcceeecccccchhH---hhhcC----c--------ccCCCceeEecccCcchheeeeccchhhheeeeccc-ccceee
Confidence            8999999987766542   11111    0        0234444444453  4444444 44 8999999986 777777


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++....+.+.        .  -+.+++..|.|++++++-.+|.|.+.|.+++
T Consensus       867 ~kVcna~~Pn--------a--~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  867 LKVCNAPGPN--------A--LTRAIAVADKGNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             EEeccCCCCc--------h--heeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence            7655332210        0  1268899999999999999999999999988

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.81  E-value=2.8e-05  Score=69.17  Aligned_cols=252  Identities=11%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             cCCCCeEEEEeC----------CCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           44 APNGSMFILSTN----------DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        44 ~~~~~~l~t~s~----------d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      +||++.|.++..          +..|.+||..+.+. ..+... ......    .  -.......++++++++.-..+..
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~~----~--~~~~~~~~ls~dgk~l~V~n~~p  126 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGPRFL----V--GTYPWMTSLTPDNKTLLFYQFSP  126 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCchhh----c--cCccceEEECCCCCEEEEecCCC
Confidence            788887776655          78999999999873 333321 110000    0  00111344556666666555554


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-  191 (421)
                      ...+.+.|++..   +.+..+ .- .+...-.. .++..+.+-+.||......+...++.. ....  ..+..-..++. 
T Consensus       127 ~~~V~VvD~~~~---kvv~ei-~v-p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~--~vf~~~~~~v~~  197 (352)
T TIGR02658       127 SPAVGVVDLEGK---AFVRMM-DV-PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPT--EVFHPEDEYLIN  197 (352)
T ss_pred             CCEEEEEECCCC---cEEEEE-eC-CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-Eeee--eeecCCcccccc
Confidence            567788888776   555444 11 11111111 222223333344444443333222211 1000  00011000000 


Q ss_pred             EEEEec-CCCCeEEEEEcCCeEEEEECCccccccc-chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---
Q 014644          192 SAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---  266 (421)
Q Consensus       192 ~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---  266 (421)
                      .-.|.+ ++ ..+..... |+|.+.|+........ ....+.. .....     .-..+...-++++|+++.+....   
T Consensus       198 rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~-----~wrP~g~q~ia~~~dg~~lyV~~~~~  269 (352)
T TIGR02658       198 HPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKAD-----GWRPGGWQQVAYHRARDRIYLLADQR  269 (352)
T ss_pred             CCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccc-ccccc-----ccCCCcceeEEEcCCCCEEEEEecCC
Confidence            004566 66 66655554 9999999765432110 0111111 00000     00123344599999999887632   


Q ss_pred             ------C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEEEEecCCC
Q 014644          267 ------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       267 ------~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~iwd~~~~  336 (421)
                            +  +.|.++|..+ ++.+..+......                .+++++||++ +|++.. .++.|.+.|..++
T Consensus       270 ~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       270 AKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             ccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence                  1  5799999987 8888777654433                6899999999 777666 5788999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.80  E-value=3.8e-06  Score=86.30  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             eEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecC--CCCCCc------cCCCeeEEEEecCCCCeEEEEEcCC
Q 014644          141 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDD------LTEVITSAEFHPIYCNLLAYSSSRG  210 (421)
Q Consensus       141 v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--~~~~~~------~~~~v~~~~~~p~~~~~l~s~~~d~  210 (421)
                      ...++++| ++.++++. .++.|++||.. .+.. ..+...  .....+      .-.....++++|++..++++-+.++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~  762 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS  762 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC
Confidence            35789999 45555665 78999999987 3322 221100  000011      1134567999999833555666779


Q ss_pred             eEEEEECCccccccc---------chhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc
Q 014644          211 FVRLVDMRQSALCDH---------SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  280 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~---------~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~  280 (421)
                      .|++||+.++.....         ....+.. ......    ...-.....++++++|.++++-.. +.|++||..+ +.
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~-~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~  836 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGD-HDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR  836 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccC-CCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence            999999987542100         0000000 000000    001123468999999987777665 9999999875 44


Q ss_pred             ceeEEeeccCccccccccc-CCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          281 PVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      .. .+.+......  .... ..........++++++|+.+++-+.++.|++||+.++.
T Consensus       837 v~-tiaG~G~~G~--~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        837 VT-TLAGTGKAGF--KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EE-EEeccCCcCC--CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            33 3322211000  0000 00000112689999999988888899999999998863

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.76  E-value=4e-07  Score=76.99  Aligned_cols=247  Identities=11%  Similarity=0.043  Sum_probs=169.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      ..++.+ +||.+.|++...-|...-+.+. .|.++++|--+..++....+-      ..-..+++++.+.+.. ..|+.+
T Consensus        15 ~ll~~~-eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~------~~mP~~~~~~~y~~e~-~~L~vg   86 (404)
T KOG1409|consen   15 ELLSKI-EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY------HYMPSPCSAMEYVSES-RRLYVG   86 (404)
T ss_pred             hhhhhh-cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh------hhCCCCceEeeeeccc-eEEEEE
Confidence            445556 8999999999888888888887 999999997664555443321      2234678999999998 889999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      -..|++.-+.+...-......+.+..             |...+..+-|+-..+++++.+..+-..|.....+.-+..+.
T Consensus        87 ~~ngtvtefs~sedfnkm~~~r~~~~-------------h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFNKMTFLKDYLA-------------HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             EecceEEEEEhhhhhhhcchhhhhhh-------------hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence            99999988866542111111233333             48899999999888888887654445565433243332222


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC-CCceeEEecCCCCccceeeecCCcccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      -....                .++.+.-.  +...|...|.|.+-.+... -.....+.+|.+++.+..|.+.       
T Consensus       154 ~~~~~----------------t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-------  208 (404)
T KOG1409|consen  154 FETPA----------------SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-------  208 (404)
T ss_pred             eeccC----------------CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-------
Confidence            11111                11122111  5566777777776665543 2457888999999999999987       


Q ss_pred             cceeeeecccCc-ccCCCC---CccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          366 LSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw~~~---~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ...|.+|..|.. .+|+.+   +......+|...|..++.-+--+.|.+++ ++.|-+|+
T Consensus       209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence            338999999999 999544   45566778888998888877777666666 77788886

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.76  E-value=2e-07  Score=80.43  Aligned_cols=158  Identities=9%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---cCCeEEEEE
Q 014644          141 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVD  216 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~d~~v~iwd  216 (421)
                      +..+..++.+++||.+ .+....+++...+.+-.+.++.     ..-...-+++.|..+. ..+..+.   ....+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence            4445667888888888 6666666766533321222110     1111223344444444 3333333   333444444


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE-EeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~~~~~  294 (421)
                      ...+..     ..+             -+|-..+..++|+||+++|++++. ..|++-.... .-.+.. +-||...+  
T Consensus       139 ~~~~~~-----~~~-------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV--  197 (390)
T KOG3914|consen  139 ADSGRC-----EPI-------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV--  197 (390)
T ss_pred             ccccCc-----chh-------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence            443221     222             345788999999999999999975 9999988764 333333 34688776  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                                   ..++.-++ +.|++++.|++|++||+.++..+
T Consensus       198 -------------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  198 -------------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -------------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence                         56666654 56899999999999999998544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=1.3e-08  Score=95.98  Aligned_cols=199  Identities=14%  Similarity=0.187  Sum_probs=137.6

Q ss_pred             ccccccc-cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           24 FDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        24 ~~~~~~~-~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      |..++++ .|...-+|++|  +.+.++|+.|+..|.|+++++.+|...                                
T Consensus      1091 Fr~w~~frd~~~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e-------------------------------- 1136 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSME-------------------------------- 1136 (1516)
T ss_pred             cccchhhhccccceeeEEe--ecCCceEEeeeccceEEEEEccCcccc--------------------------------
Confidence            3334443 46777899999  688899999999999999999987511                                


Q ss_pred             eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCC-cEEEEeCCCCceeeeeeecC
Q 014644          103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL-RINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~-~i~lwd~~~~~~~~~~~~~~  179 (421)
                                                  ..+ .+|...|+-+.-+.||..++++  ... -..+|++....+....+   
T Consensus      1137 ----------------------------~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf--- 1184 (1516)
T KOG1832|consen 1137 ----------------------------ESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF--- 1184 (1516)
T ss_pred             ----------------------------ccc-cccccccccccccCCcceeeeeccccCchHHHhccccccCccccc---
Confidence                                        112 6899999999999999888875  333 56799998554444332   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                              ..-.++.|+... ..-+.|.......+||+.++..+...   +.. .         .+....-+...|+|+.
T Consensus      1185 --------~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~-~---------~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1185 --------DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY---LTD-T---------VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             --------cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHh---cCc-c---------hhhhhhccccccCCCc
Confidence                    234678888765 44444555566889999998765321   222 0         0012233788999998


Q ss_pred             CEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          260 QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       260 ~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++++--+    .+||.+. .+.++.|..-...                ..-.|+|.|..++..++     |||+++.
T Consensus      1243 ~LIlndG----vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1243 TLILNDG----VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred             ceEeeCc----eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhhhHHH
Confidence            8777432    6899987 5666665443321                24579999999998887     8999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=7.9e-05  Score=64.15  Aligned_cols=176  Identities=15%  Similarity=0.164  Sum_probs=102.4

Q ss_pred             eEEEeec-CCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEEEcC--------C
Q 014644          141 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G  210 (421)
Q Consensus       141 v~~l~~~-~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~d--------~  210 (421)
                      ...+++. +++.++++... .+.++|.. .++........  . .. .......+++.|+| ++.++....        |
T Consensus        42 ~~G~~~~~~~g~l~v~~~~-~~~~~d~~-~g~~~~~~~~~--~-~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSG-GIAVVDPD-TGKVTVLADLP--D-GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTSEEEEEETT-CEEEEETT-TTEEEEEEEEE--T-TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCCEEEEEEcC-ceEEEecC-CCcEEEEeecc--C-CCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence            5566676 66555444444 45556887 34333332110  0 11 33567889999999 766665533        4


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCccee---EE
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVA---TF  285 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~---~~  285 (421)
                      .|..++.. ++..    .....              -...+.++|+|+++.|... +. +.|..+++...+..+.   .+
T Consensus       116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen  116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred             ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence            56677766 3321    12222              3457899999999987755 44 8899999864333121   12


Q ss_pred             -eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeee
Q 014644          286 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ  356 (421)
Q Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  356 (421)
                       ...... .            ..-.+++..+|++.++....+.|.+++-+ + .....+.........++|.
T Consensus       177 ~~~~~~~-g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  177 IDFPGGP-G------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EE-SSSS-C------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEE
T ss_pred             EEcCCCC-c------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEE
Confidence             111110 0            01479999999988887788999999977 4 5555555444466666664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=9.8e-08  Score=80.66  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             EEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc
Q 014644          153 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  232 (421)
Q Consensus       153 l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  232 (421)
                      +++|-+..|-+-|++++-+..          -.....|.++.|...+ +++..|..+|.|..+|++.+..-    ..+..
T Consensus       228 fs~G~sqqv~L~nvetg~~qs----------f~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~~~a  292 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS----------FQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NGWCA  292 (425)
T ss_pred             ecccccceeEEEEeecccccc----------cccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CCcce
Confidence            334566677787887332211          1245778999999887 89999999999999999976221    11111


Q ss_pred             ccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcc---eeEEeeccCcccccccccCCCcceee
Q 014644          233 AAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDK  307 (421)
Q Consensus       233 h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
                      |         .--|.+.|+++..-. ++++|++.+. |+|++||++. -+.   +..+.+|-.....             
T Consensus       293 ~---------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~-------------  349 (425)
T KOG2695|consen  293 Q---------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY-------------  349 (425)
T ss_pred             E---------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc-------------
Confidence            1         122467888887776 6788887776 9999999986 555   8888888764322             


Q ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      .-+-..+....++++++|...|||.++.+ .+..++..
T Consensus       350 l~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tipf  386 (425)
T KOG2695|consen  350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIPF  386 (425)
T ss_pred             cccccccccceEEEccCeeEEEEEecccC-ceeeccCC
Confidence            23566677778889999999999999987 55555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=7e-08  Score=56.36  Aligned_cols=37  Identities=30%  Similarity=0.616  Sum_probs=35.0

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEe
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  165 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd  165 (421)
                      ++++.+ .+|.+.|++++|+|++.+|+++ .|++|++||
T Consensus         2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            677888 9999999999999999999999 999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=9.3e-07  Score=77.49  Aligned_cols=228  Identities=20%  Similarity=0.169  Sum_probs=145.5

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      |-++.-|.+.|+.+.-   .-.+++.+++.||.++.|.-..-+..                                   
T Consensus         2 yeksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGv-----------------------------------   43 (558)
T KOG0882|consen    2 YEKSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGV-----------------------------------   43 (558)
T ss_pred             cchhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCccce-----------------------------------
Confidence            5678889999998865   45689999999999999975431100                                   


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                            +.++.+ ..|-..|.+++.+-++.++.+. . |..++++|+. +-.....+     .+
T Consensus        44 ----------------------EfVKhF-raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~Dminmi-----KL   94 (558)
T KOG0882|consen   44 ----------------------EFVKHF-RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMI-----KL   94 (558)
T ss_pred             ----------------------eehhhh-HHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhc-----cc
Confidence                                  333334 6888899999999999999995 5 9999999998 43333222     11


Q ss_pred             CccCCCeeEEEEecCCCC-eEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          184 DDLTEVITSAEFHPIYCN-LLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~-~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .--.+.+..+ .+|.... .|+.+ -.++.+.++|-.......   ..+.            .-|..+|..+.+.+-+.-
T Consensus        95 ~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   95 VDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             ccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence            1112222222 2232212 33333 367889999976643221   1111            234789999999999999


Q ss_pred             EEEecC-CeEEEEECCCC-----CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          262 LLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      +++... |.|.-|.....     ......++..... ....  .....   ..++.|+|+|..+.+-+.|..|+++++.+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~--K~Kt~---pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFP--KAKTE---PTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchh-hccc--ccccC---ccceEEccccCcccccCcccEEEEEEecc
Confidence            988876 99999987620     1111111111110 0000  00011   16899999999999999999999999998


Q ss_pred             CCCceeEE
Q 014644          336 GSAGGITV  343 (421)
Q Consensus       336 ~~~~~~~~  343 (421)
                      + ...+.+
T Consensus       233 G-klvqei  239 (558)
T KOG0882|consen  233 G-KLVQEI  239 (558)
T ss_pred             c-hhhhhh
Confidence            7 444433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.65  E-value=2.1e-07  Score=75.62  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             cceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          139 FNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ..|.+++-+|..+ .+++| +||.+.+||.+.......       .+..|..+++.+-|+|..+..|++++.||.+..||
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            3499999999655 45557 999999999984322332       34789999999999999889999999999999999


Q ss_pred             CCc
Q 014644          217 MRQ  219 (421)
Q Consensus       217 ~~~  219 (421)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.65  E-value=4.5e-05  Score=70.32  Aligned_cols=308  Identities=10%  Similarity=-0.020  Sum_probs=142.9

Q ss_pred             CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccc
Q 014644           46 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  125 (421)
Q Consensus        46 ~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  125 (421)
                      .+..+++++.++.|.-+|..+++..-...  ....+.        ..   +...  ...+..+..  .+.+..+|..++ 
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~--~~~~~~--------~~---p~v~--~~~v~v~~~--~g~l~ald~~tG-  125 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD--LDERLS--------GG---VGAD--GGLVFVGTE--KGEVIALDAEDG-  125 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec--CCCCcc--------cc---eEEc--CCEEEEEcC--CCEEEEEECCCC-
Confidence            36788889999999999998887432221  111111        00   0000  111111111  233444555444 


Q ss_pred             eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          126 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       126 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                        +.+... .. .+.+.+.-.. .+..++.+ .++.|..||.+++....+.. .....+. ... ..+....  + ..++
T Consensus       126 --~~~W~~-~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~-~~~-~~sp~~~--~-~~v~  194 (377)
T TIGR03300       126 --KELWRA-KL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALT-LRG-SASPVIA--D-GGVL  194 (377)
T ss_pred             --cEeeee-cc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCcee-ecC-CCCCEEE--C-CEEE
Confidence              333333 11 1222211111 23455666 89999999998444333321 1100000 000 0111111  2 3577


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCccee
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  283 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~  283 (421)
                      .+..++.+..+|+++++..      |......+........-........+  .+..+..++ ++.++.+|..+ ++.+.
T Consensus       195 ~~~~~g~v~ald~~tG~~~------W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t-G~~~W  265 (377)
T TIGR03300       195 VGFAGGKLVALDLQTGQPL------WEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS-GRVLW  265 (377)
T ss_pred             EECCCCEEEEEEccCCCEe------eeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCC-CcEEE
Confidence            7888899999999888643      21100000000000000000011111  234555444 49999999986 76655


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      .......                 .....  .+..++.++.+|.++.+|..++...-..-.............       
T Consensus       266 ~~~~~~~-----------------~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~-------  319 (377)
T TIGR03300       266 KRDASSY-----------------QGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV-------  319 (377)
T ss_pred             eeccCCc-----------------cCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE-------
Confidence            4431111                 12222  456788888999999999988733211101111111122222       


Q ss_pred             cccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          364 SSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                        ...|+.++.+|. .++  ..++.+....-+...+..--.-.++++++.+.++.|+.|
T Consensus       320 --g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       320 --GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             --CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence              226788888887 666  234443333222222222222233444444456678876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.64  E-value=3.6e-05  Score=70.01  Aligned_cols=253  Identities=11%  Similarity=0.063  Sum_probs=120.4

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee-cCCCCCCcc---------CCCeeEEEEecCCCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPSNMDDL---------TEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~-~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      ...+....|+|+|+.++...++.|.+++.. .+...++.. .....+.|-         -+.-..+-||||+ +.|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEE
Confidence            456778899999999999988899999987 344443321 100000000         1223568899999 7777665


Q ss_pred             c-CCeEEEEECC---cccc----cc-----------cchh--hhccccccCCCc-c---cccccccceeEEEEcCCCCEE
Q 014644          208 S-RGFVRLVDMR---QSAL----CD-----------HSAR--ILRDAAESHGSK-S---FFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       208 ~-d~~v~iwd~~---~~~~----~~-----------~~~~--~~~~h~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      . +..|+.+.+.   ....    ..           ....  +++. ....... .   .+......+..+.|.++++.+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~-~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL-ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES-SSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC-CCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            3 3444443322   1100    00           0000  0110 0000000 0   012235678899999999844


Q ss_pred             E-Ee---c-C-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEc-CCCC-EEEEeeCCCeEEEEec
Q 014644          263 L-SR---D-Y-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSH  333 (421)
Q Consensus       263 ~-~~---~-~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~-~l~~~s~dg~i~iwd~  333 (421)
                      + .-   . . ..+.++|..+ +....... .....+...            ....|. +++. +|.....+|.-+|+-+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~~------------~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVDVY------------DPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSSSS------------SEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             EEEEcccCCCEEEEEEEECCC-CceeEEEEecCCcceeee------------cccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            4 32   1 2 4567778765 44332222 222222111            245554 6554 4445556776555544


Q ss_pred             CCCCCceeEEecCCCCccce-eeecCCcccccccceeeeecc--cCc-ccC--CCC-CccccccccccCe-EEEEEccCC
Q 014644          334 GVGSAGGITVEAGKNENRKP-ILQAAPRARRSSLSNLTRGLY--RQA-HEN--SSS-GHHELSYNLSSKL-LHLAWHPTT  405 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~--d~~-~iw--~~~-~~~~~~~~~~~~v-~~~~~spd~  405 (421)
                      .........+....-.|..+ .+... .+.     ...++..  -.. .+|  ... ......+...... ..++|||++
T Consensus       266 ~~~~~~~~~lT~G~~~V~~i~~~d~~-~~~-----iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  266 DLDGGKPRQLTSGDWEVTSILGWDED-NNR-----IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG  339 (353)
T ss_dssp             ETTSSEEEESS-SSS-EEEEEEEECT-SSE-----EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred             cccccceeccccCceeecccceEcCC-CCE-----EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence            44334445555555556443 34443 122     2333333  233 677  222 2222222222222 589999999


Q ss_pred             CeEEEec
Q 014644          406 NLIACAN  412 (421)
Q Consensus       406 ~~la~~~  412 (421)
                      ++++...
T Consensus       340 ~y~v~~~  346 (353)
T PF00930_consen  340 KYYVDTY  346 (353)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.55  E-value=3.7e-07  Score=53.21  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      +.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus         7 ~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            37899999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.53  E-value=3.5e-08  Score=89.99  Aligned_cols=166  Identities=16%  Similarity=0.164  Sum_probs=108.5

Q ss_pred             CCCCcceEEEeecC-CCCEEEEE-c----CCcEEEEeCCCCc-eeeeeeecCCCCCCc-cCCCeeEEEEecCCCCeEEEE
Q 014644          135 HAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD-QCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       135 ~~h~~~v~~l~~~~-~~~~l~s~-~----d~~i~lwd~~~~~-~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      .+|....++++|++ |...||+| +    |..+.|||+.+.- .+...     ..+.+ ......+++|..+. +++.+|
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----~~fs~~~l~gqns~cwlrd~-klvlaG  172 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----PLFSSSTLDGQNSVCWLRDT-KLVLAG  172 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-----cccccccccCccccccccCc-chhhcc
Confidence            67778899999988 67788887 4    7789999998321 11111     11111 33445688999887 889999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecCCeEEEEE-CCCCCcceeE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWD-IRMDSTPVAT  284 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~i~i~d-~~~~~~~~~~  284 (421)
                      ...+.+.++|+|......   ..+.               ...+..+..+| .+.|+++-.++.|-+|| .++-..++..
T Consensus       173 m~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  173 MTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             cccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceeccccCceeeccchhhhccHHHH
Confidence            999999999999543211   1111               23577888899 78899988889999999 4433344433


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEee-CCCeEEEEecCC
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGS-YSNLLRIFSHGV  335 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s-~dg~i~iwd~~~  335 (421)
                      +...+...+        +   -+..++|+|.. ..+++.+ +.++|+++|+..
T Consensus       235 i~~~~N~~~--------~---~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  235 ILRNENKKP--------K---QLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             HhhCCCCcc--------c---ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            322222110        0   01689999952 2344444 467899999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.46  E-value=0.00026  Score=60.99  Aligned_cols=219  Identities=11%  Similarity=0.040  Sum_probs=119.0

Q ss_pred             EEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe-cCCCCeEEEEEcCCeEEEEECCc
Q 014644          143 SISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       143 ~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                      ++.|.+ ++.++++. ..+.|..|+.. .+. ...+.        . ....++++. +++  .|+.+..++ +.++|+.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~-~~~-~~~~~--------~-~~~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~   69 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPD-TGE-VEVID--------L-PGPNGMAFDRPDG--RLYVADSGG-IAVVDPDT   69 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT-TTE-EEEEE--------S-SSEEEEEEECTTS--EEEEEETTC-EEEEETTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECC-CCe-EEEEe--------c-CCCceEEEEccCC--EEEEEEcCc-eEEEecCC
Confidence            567887 67777777 89999999998 333 22221        1 116777888 564  455555554 55669887


Q ss_pred             ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC---------CeEEEEECCCCCcceeEEeeccC
Q 014644          220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ++..    ..... ...       .......+.+++.|+|++.++...         +.|..++..  ++.......-..
T Consensus        70 g~~~----~~~~~-~~~-------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~  135 (246)
T PF08450_consen   70 GKVT----VLADL-PDG-------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGF  135 (246)
T ss_dssp             TEEE----EEEEE-ETT-------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESS
T ss_pred             CcEE----EEeec-cCC-------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCccc
Confidence            6532    11111 000       001457889999999997776432         235555543  333333322222


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCC-c--eeEE-ecCCC--CccceeeecCCcccc
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSA-G--GITV-EAGKN--ENRKPILQAAPRARR  363 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~-~--~~~~-~~~~~--~~~~~~~~~~~~~~~  363 (421)
                      +                ..++|+|+++.|+ +-+..+.|..+++..... .  ...+ .....  ....+++..+  |+ 
T Consensus       136 p----------------NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~-  196 (246)
T PF08450_consen  136 P----------------NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GN-  196 (246)
T ss_dssp             E----------------EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S--
T ss_pred             c----------------cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CC-
Confidence            2                6899999999776 556788999999875433 1  1122 21221  1334555444  33 


Q ss_pred             cccceeeeecccCc-ccCCCCCccccccc-cccCeEEEEE-ccCCCeEEEec
Q 014644          364 SSLSNLTRGLYRQA-HENSSSGHHELSYN-LSSKLLHLAW-HPTTNLIACAN  412 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw~~~~~~~~~~~-~~~~v~~~~~-spd~~~la~~~  412 (421)
                          ..++....+. ..++..+.+...+. ....+++++| .|+.+.|.+.+
T Consensus       197 ----l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  197 ----LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ----EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             ----EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence                3333322222 44433333333322 2358999999 47766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=6.9e-06  Score=77.39  Aligned_cols=142  Identities=12%  Similarity=-0.013  Sum_probs=97.6

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ..+.|++++  +++|+-| .+|.|++.+..  +.....        ..|...      .-+| .++++|+.||.|.|-.+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~--~~~~~~--------~~~s~~------~~~G-ey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ--GNPKTN--------FDHSSS------ILEG-EYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC--Cccccc--------cccccc------ccCC-ceEEEecCCCcEEEeec
Confidence            456677775  7889999 99999999987  332221        223332      5567 99999999999999988


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----CCEEEEecC-CeEEEEECCCCCccee-EEeeccC
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVA-TFKIHEH  290 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~-~~i~i~d~~~~~~~~~-~~~~~~~  290 (421)
                      -+.+..    ..++-              ..++.+++++|+     .+.+++|+. | +.++.-+--+.... .+....+
T Consensus       101 ~~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG  161 (846)
T KOG2066|consen  101 FTDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG  161 (846)
T ss_pred             cCCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence            776543    33333              458999999998     567888887 7 88876542122221 1233333


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++               .+++|  .|.+||-++.+| |++||+.+.
T Consensus       162 ~I---------------~~i~W--~g~lIAWand~G-v~vyd~~~~  189 (846)
T KOG2066|consen  162 PI---------------HSIKW--RGNLIAWANDDG-VKVYDTPTR  189 (846)
T ss_pred             ce---------------EEEEe--cCcEEEEecCCC-cEEEecccc
Confidence            33               78898  577887777555 889999877

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.40  E-value=0.00023  Score=65.64  Aligned_cols=235  Identities=13%  Similarity=0.043  Sum_probs=118.8

Q ss_pred             CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccc
Q 014644           46 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  125 (421)
Q Consensus        46 ~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  125 (421)
                      ++..++.++.|+.|..+|..+++..-...  ..+.+.+.           .... ....+..   ..++.+..+|..++ 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~-----------p~v~-~~~v~v~---~~~g~l~a~d~~tG-  165 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSP-----------PLVA-NGLVVVR---TNDGRLTALDAATG-  165 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecC-----------CEEE-CCEEEEE---CCCCeEEEEEcCCC-
Confidence            35678888899999999998887433222  11111100           0000 1111111   01234555555554 


Q ss_pred             eeeeeeeecCCCCcce-----EEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC--CC---e-eEE
Q 014644          126 HARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSA  193 (421)
Q Consensus       126 ~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~~~  193 (421)
                        +.+..+ ......+     .+.... + ..++.+ .++.+..+|.+++....+. ....  ..+..  ..   + .+.
T Consensus       166 --~~~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~-~~~~--~~g~~~~~~~~~~~~~p  237 (377)
T TIGR03300       166 --ERLWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ-RVAL--PKGRTELERLVDVDGDP  237 (377)
T ss_pred             --ceeeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee-cccc--CCCCCchhhhhccCCcc
Confidence              333333 1111110     011111 2 356667 8899999998744333321 1000  00000  00   1 111


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEE
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL  272 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i  272 (421)
                      .+  .+ ..++.++.+|.+..+|..+++..      |.. .            .........  ++..++.++ +|.+..
T Consensus       238 ~~--~~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~------------~~~~~~p~~--~~~~vyv~~~~G~l~~  293 (377)
T TIGR03300       238 VV--DG-GQVYAVSYQGRVAALDLRSGRVL------WKR-D------------ASSYQGPAV--DDNRLYVTDADGVVVA  293 (377)
T ss_pred             EE--EC-CEEEEEEcCCEEEEEECCCCcEE------Eee-c------------cCCccCceE--eCCEEEEECCCCeEEE
Confidence            12  23 57778888999999999887632      222 0            001112222  345555554 499999


Q ss_pred             EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      +|..+ ++.+..........  .            .+...  .+..|++++.+|.|+++|..++ +....+..+..
T Consensus       294 ~d~~t-G~~~W~~~~~~~~~--~------------ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~  351 (377)
T TIGR03300       294 LDRRS-GSELWKNDELKYRQ--L------------TAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVARLKTDGS  351 (377)
T ss_pred             EECCC-CcEEEccccccCCc--c------------ccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCC
Confidence            99976 76654432111100  0            12222  3668889999999999999887 55555554443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3.9e-05  Score=67.67  Aligned_cols=282  Identities=16%  Similarity=0.100  Sum_probs=158.9

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeC-CCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~-d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .|-..|.+++-  +-++.++.|.+. |+.+|++|+++-.+. .+.....++.+..+            ....+...+...
T Consensus        51 aHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv------------~skGd~~s~IAV  116 (558)
T KOG0882|consen   51 AHLGVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV------------TSKGDKISLIAV  116 (558)
T ss_pred             HHHHHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe------------cCCCCeeeeEEe
Confidence            46667777777  678889999888 999999999876522 23322333322211            111111222222


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeee---eecCCC---
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI---VDMKPS---  181 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~---~~~~~~---  181 (421)
                      +....+.+.+.|-...  ......+..-|..+|..+.+++.+..+++. ..|.|.-|.....-+..+.   +..|..   
T Consensus       117 s~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL  194 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL  194 (558)
T ss_pred             ecccCCCcEEECCcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence            2222334444443322  112222335699999999999999999998 8999999998721111110   111110   


Q ss_pred             -CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc---------------ccccc
Q 014644          182 -NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK---------------SFFTE  245 (421)
Q Consensus       182 -~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~---------------~~~~~  245 (421)
                       .+..-.....++.|+|++ ..+.+-+.|..|++++++++++....-.........+...               ..+..
T Consensus       195 y~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek  273 (558)
T KOG0882|consen  195 YGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK  273 (558)
T ss_pred             hcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence             112234567899999999 9999999999999999999876421111000000000000               00122


Q ss_pred             cc-cceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccc-ccccCC---------Ccce-eeeEEEEc
Q 014644          246 II-ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL-CDLYNN---------DSIF-DKFECSVS  313 (421)
Q Consensus       246 ~~-~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~-~~~~~~~s  313 (421)
                      |. ..-..+.|...|++|+-++--.|++.++.+ +++++.+-..+ .+..+ -.+|+.         +... ....+.+.
T Consensus       274 ~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~  351 (558)
T KOG0882|consen  274 HGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQ  351 (558)
T ss_pred             hcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccC
Confidence            22 234567899999999999875589999987 77666553222 21110 000000         0000 00123466


Q ss_pred             CCCCEEEEeeCCCeEEEE
Q 014644          314 GDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       314 p~~~~l~~~s~dg~i~iw  331 (421)
                      +|...++++-....++++
T Consensus       352 ~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  352 KDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             CCCeEEEeeeecceEEEE
Confidence            677777777777778877

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=6.3e-05  Score=70.85  Aligned_cols=264  Identities=12%  Similarity=0.103  Sum_probs=156.7

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      -+++.|  + .+.++|-|+.. .|.+=|..+-+ ++.+  ..|+..|..+.|.+..-...-.+..  ...+...+.+-.+
T Consensus        18 ~~A~Dw--~-~~GLiAygshs-lV~VVDs~s~q~iqsi--e~h~s~V~~VrWap~~~p~~llS~~--~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   18 RNAADW--S-PSGLIAYGSHS-LVSVVDSRSLQLIQSI--ELHQSAVTSVRWAPAPSPRDLLSPS--SSQLLIASADISG   89 (1062)
T ss_pred             cccccc--C-ccceEEEecCc-eEEEEehhhhhhhhcc--ccCccceeEEEeccCCCchhccCcc--ccceeEEeccccC
Confidence            477888  3 35678877754 67777765544 2222  3366778888888754433222211  1222222334467


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecC---CC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                      .+.+||....   ..+..+ ..|..++..++|-+   +. ..|++- ...+|.+|+..+++..++.        .-....
T Consensus        90 rIil~d~~~~---s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--------~ys~~i  157 (1062)
T KOG1912|consen   90 RIILVDFVLA---SVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY--------DYSHEI  157 (1062)
T ss_pred             cEEEEEehhh---hhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc--------ccCCcc
Confidence            8899998876   445555 78899999999965   44 344444 7889999999966555542        223355


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhc---cccccCC-Cccc------ccc-----cccceeEEE
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHG-SKSF------FTE-----IIASISDIK  254 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~h~~~~~-~~~~------~~~-----~~~~v~~~~  254 (421)
                      ..|+.+.|-.++.+..-+..|.+.+.+.......+...+.+.   .|.+... .+..      ...     .......++
T Consensus       158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa  237 (1062)
T KOG1912|consen  158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA  237 (1062)
T ss_pred             eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence            677999997667777777778777776544322221112221   1111000 0000      000     001133567


Q ss_pred             EcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEE
Q 014644          255 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIF  331 (421)
Q Consensus       255 ~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iw  331 (421)
                      |+|.-+.++.... ..+.++|++- ..++..........               -=+.+-|+  ...|++...||.+.||
T Consensus       238 f~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  238 FSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             cChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEEecCCeEEEE
Confidence            8887666655544 7899999986 66666665554432               12456665  4568899999999999


Q ss_pred             ecCC
Q 014644          332 SHGV  335 (421)
Q Consensus       332 d~~~  335 (421)
                      -.+.
T Consensus       302 vrk~  305 (1062)
T KOG1912|consen  302 VRKE  305 (1062)
T ss_pred             Eeec
Confidence            7654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.37  E-value=2.7e-05  Score=71.65  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             CCCCcceEEEeecCCCCEEEEE--c-C--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          135 HAHDFNINSISNNSDCETFVSA--D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~--~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      ..-...+..-+|+|+++.++..  . .  ..+.+++++. ++...+.     ++.   +.-...+|+|||.+++++...|
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~-g~~~~i~-----~~~---g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT-GKRPVIL-----NFN---GNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccC-Cccceee-----ccC---CccCCccCCCCCCEEEEEECCC
Confidence            3445567788999999987763  2 2  3599999984 4333332     222   3345568999995555666677


Q ss_pred             CeE--EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEE
Q 014644          210 GFV--RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 ~~v--~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~  285 (421)
                      |..  .++|+..+...    ++...              .+.-..-.|+|||++|+..++  |.-.||-+..++.....+
T Consensus       260 g~~~iy~~dl~~~~~~----~Lt~~--------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         260 GSPDIYLMDLDGKNLP----RLTNG--------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             CCccEEEEcCCCCcce----ecccC--------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            764  55577665422    21111              233347789999999987654  544444433334444444


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCe--EEEEecCCCC
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS  337 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~--i~iwd~~~~~  337 (421)
                      .......               ....|+|||++|+..+. +|.  |.+.|+.++.
T Consensus       322 T~~~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         322 TFSGGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eccCCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            4333321               25689999999887764 344  6667776663

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00018  Score=68.69  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             CCCcc-eEEEeecCCCCEEEE-E-cCC----cEEEEeCCCC-----ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE
Q 014644          136 AHDFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  203 (421)
Q Consensus       136 ~h~~~-v~~l~~~~~~~~l~s-~-~d~----~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  203 (421)
                      .+... |..+....+..+|++ | ++.    .|++|+++..     .+++....+-+...+....++.+++.+.+- +.+
T Consensus        62 a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~I  140 (933)
T KOG2114|consen   62 AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTI  140 (933)
T ss_pred             ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEE
Confidence            34434 444433434456666 4 444    6999998743     233422221111223345778899999997 999


Q ss_pred             EEEEcCCeEEEEE--CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE-EEEecCCeEEEEECCCCCc
Q 014644          204 AYSSSRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDST  280 (421)
Q Consensus       204 ~s~~~d~~v~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~i~d~~~~~~  280 (421)
                      |+|-.+|.|..+.  +...+..    +.--.           .....+|+++++..+++. +++++-..|.+|.+.. ..
T Consensus       141 v~Gf~nG~V~~~~GDi~RDrgs----r~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~  204 (933)
T KOG2114|consen  141 VCGFTNGLVICYKGDILRDRGS----RQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RT  204 (933)
T ss_pred             EEEecCcEEEEEcCcchhcccc----ceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CC
Confidence            9999999998883  2211100    11111           112679999999999887 3344446899999974 33


Q ss_pred             ce-eEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecCCC
Q 014644          281 PV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       281 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~~~  336 (421)
                      +. ..+..+....               .+.++++... +++++  +..+.+|+....
T Consensus       205 p~~~~ld~~G~~l---------------nCss~~~~t~qfIca~--~e~l~fY~sd~~  245 (933)
T KOG2114|consen  205 PSLKVLDNNGISL---------------NCSSFSDGTYQFICAG--SEFLYFYDSDGR  245 (933)
T ss_pred             cceeeeccCCccc---------------eeeecCCCCccEEEec--CceEEEEcCCCc
Confidence            33 3344444322               5667776544 44444  357889987754

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.31  E-value=8.5e-05  Score=68.22  Aligned_cols=116  Identities=14%  Similarity=0.057  Sum_probs=77.4

Q ss_pred             CeeEEEEecCCCCeEEEEE----cCCeE----EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          189 VITSAEFHPIYCNLLAYSS----SRGFV----RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~----~d~~v----~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ...++.|+-..++.+.+..    .+|.+    .+|++..++...-.+..+..              ...+.+++++|+.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL--------------~s~v~~ca~sp~E~  272 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPL--------------PSQVICCARSPSED  272 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEec--------------CCcceEEecCcccc
Confidence            3467778775556666543    34433    45666544322111122222              56899999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .++.|.. |.|.+||... +.  ..+....-..               ..++|+|+|..+++|+..|.+.+||+.-.
T Consensus       273 kLvlGC~DgSiiLyD~~~-~~--t~~~ka~~~P---------------~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  273 KLVLGCEDGSIILYDTTR-GV--TLLAKAEFIP---------------TLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             eEEEEecCCeEEEEEcCC-Ce--eeeeeecccc---------------eEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9988864 9999999865 32  2222111111               67999999999999999999999998876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.28  E-value=0.00063  Score=58.61  Aligned_cols=230  Identities=11%  Similarity=0.027  Sum_probs=126.9

Q ss_pred             ceEEEeecC-CCCEEEEE-cCC-cEEEEeCCCCceeeeeeecC-CCCCCccCCCeeEEEEecCCCCeEEEEEc-----CC
Q 014644          140 NINSISNNS-DCETFVSA-DDL-RINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RG  210 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~-~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----d~  210 (421)
                      +...++.+| ....++.+ .-| ...+||.. +++....+... ...+.+|      -+|+||| ++|++.-.     .|
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGH------g~fs~dG-~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGH------GVFSPDG-RLLYTTENDYETGRG   77 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecC------EEEcCCC-CEEEEeccccCCCcE
Confidence            345677888 45566667 544 57899998 45555444211 1223444      4799999 88887653     47


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--------CeE-----------E
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--------MNL-----------K  271 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------~~i-----------~  271 (421)
                      .|-|||...+-..   +..|..             +--....+.+.|||+.|+.+..        |.-           .
T Consensus        78 ~IgVyd~~~~~~r---i~E~~s-------------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~  141 (305)
T PF07433_consen   78 VIGVYDAARGYRR---IGEFPS-------------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV  141 (305)
T ss_pred             EEEEEECcCCcEE---EeEecC-------------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence            8999999832111   122332             2334567889999988776532        222           2


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe-------EEEEecCCCCCceeEE-
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-------LRIFSHGVGSAGGITV-  343 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~-------i~iwd~~~~~~~~~~~-  343 (421)
                      ..|..+ ++.+.......           .+.-..+..+++.++|..++..-..|.       |.+++....   ...+ 
T Consensus       142 ~ld~~s-G~ll~q~~Lp~-----------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~  206 (305)
T PF07433_consen  142 YLDARS-GALLEQVELPP-----------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLP  206 (305)
T ss_pred             EEecCC-CceeeeeecCc-----------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceecc
Confidence            222332 44443322211           111112378999999887766554442       444443321   1112 


Q ss_pred             ------ecCCCCccceeeecCCcccccccceeeeecccCc--ccC-CCCCccccccccccCeEEEEEccCCCeEEEecCC
Q 014644          344 ------EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN  414 (421)
Q Consensus       344 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~  414 (421)
                            ..-.+.+.++++..+  +     ..++..+-.|.  .+| ...+.+.... .-..+..++-.+++ ++++.+.+
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~--g-----~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRD--G-----RLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCC--C-----CEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEeCCCc
Confidence                  233466778888877  3     36777776666  788 2222222221 12345567777777 66666655


Q ss_pred             ceE
Q 014644          415 SLF  417 (421)
Q Consensus       415 ~~~  417 (421)
                      .+.
T Consensus       278 ~~~  280 (305)
T PF07433_consen  278 QLI  280 (305)
T ss_pred             cEE
Confidence            543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.27  E-value=0.00045  Score=65.19  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=53.2

Q ss_pred             cceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc-----------ceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          248 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                      .....+.++|||+++++++.  .++.++|+.+...           .+........+                ...+|++
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg  384 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG  384 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence            45678999999999988754  8999999976221           12222222222                4789999


Q ss_pred             CCCEEEEeeCCCeEEEEecCC
Q 014644          315 DGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      +|....+-.-|..|..||+..
T Consensus       385 ~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCEEEeEeecceeEEEehHH
Confidence            998777788899999999886

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=5.7e-06  Score=70.30  Aligned_cols=147  Identities=6%  Similarity=-0.015  Sum_probs=100.6

Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEE
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL  272 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i  272 (421)
                      +|+-+...+-++.+.+-.|-+-|+.++-.     +.|..              .+.|.++.|...+.++..|.. |.|..
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~s--------------ksDVfAlQf~~s~nLv~~GcRngeI~~  278 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQS--------------KSDVFALQFAGSDNLVFNGCRNGEIFV  278 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-----ccccc--------------chhHHHHHhcccCCeeEecccCCcEEE
Confidence            55543212335566777788888887642     33333              568899999988889998876 99999


Q ss_pred             EECCCC----CcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCC--ceeEEec
Q 014644          273 WDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA--GGITVEA  345 (421)
Q Consensus       273 ~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~  345 (421)
                      +|++..    +.+...+. |...+               +++..-. ++++|++.+.+|+|++||++..+.  .+..+.|
T Consensus       279 iDLR~rnqG~~~~a~rly-h~Ssv---------------tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  279 IDLRCRNQGNGWCAQRLY-HDSSV---------------TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG  342 (425)
T ss_pred             EEeeecccCCCcceEEEE-cCcch---------------hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence            999863    33444443 44333               4554443 678999999999999999986522  2677888


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      |...-.-+-+.-+..     ...++++++|-. +||
T Consensus       343 HvN~~a~l~~~v~~e-----eg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  343 HVNLSAYLPAHVKEE-----EGSIFSVGDDCYTRIW  373 (425)
T ss_pred             ccccccccccccccc-----cceEEEccCeeEEEEE
Confidence            876655444444322     347888999988 999

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.24  E-value=0.00065  Score=62.03  Aligned_cols=251  Identities=14%  Similarity=0.058  Sum_probs=118.4

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .|+.+.|  .++..-|+.|-..|.|-||.+...+...-.   ...+-..+       .......+...          ..
T Consensus         3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~---~~~~~~~~-------~~~~~~~~~~~----------~~   60 (395)
T PF08596_consen    3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNR---EQPPDLDY-------NFRRFSLNNSP----------GK   60 (395)
T ss_dssp             -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE----------------------------S--GGGSS-----------S
T ss_pred             eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCcc---CCCcccCc-------ccccccccCCC----------cc
Confidence            5788999  577888999999999999998765421100   00000000       00000000000          00


Q ss_pred             ceeEEeecc---cceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC-CCCccCCC
Q 014644          115 ATKIANVGN---SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEV  189 (421)
Q Consensus       115 ~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~  189 (421)
                      .+.+-+-..   .....+...+ ....++|++++.|.-| ++|.| .+|++.|.|++ +...+....+... .-......
T Consensus        61 l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~  137 (395)
T PF08596_consen   61 LTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSY  137 (395)
T ss_dssp             EEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----
T ss_pred             eEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeeccccccccccccccC
Confidence            111111000   1112455555 6668999999998444 99999 99999999998 4444333322221 11223456


Q ss_pred             eeEEEEec---CC----CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE-EcCC---
Q 014644          190 ITSAEFHP---IY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-FAND---  258 (421)
Q Consensus       190 v~~~~~~p---~~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~-~s~~---  258 (421)
                      ++++.|..   .+    .-.+++|...|.+.+|.+.-... ......+.. .        ...+.+++..+. ++.+   
T Consensus       138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g~f~v~~~~-~--------~~~~~~~i~~I~~i~~~~G~  207 (395)
T PF08596_consen  138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-GRFSVQFAG-A--------TTNHDSPILSIIPINADTGE  207 (395)
T ss_dssp             EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G-EEEEEEE-E--------E--SS----EEEEEETTT--
T ss_pred             eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-CceEEEEee-c--------cccCCCceEEEEEEECCCCC
Confidence            88888872   11    13677888999999998752110 000000111 0        011223333332 2111   


Q ss_pred             ------------------CCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc-----CC
Q 014644          259 ------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-----GD  315 (421)
Q Consensus       259 ------------------~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----p~  315 (421)
                                        ..+++.+++..++++...+ .+...+........               ..+++-     ..
T Consensus       208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~  271 (395)
T PF08596_consen  208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNG  271 (395)
T ss_dssp             B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEE
T ss_pred             cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCC
Confidence                              1256666778899999875 44433332111111               234442     25


Q ss_pred             CCEEEEeeCCCeEEEEecCCC
Q 014644          316 GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       316 ~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +..|++-..+|.|+++.+..-
T Consensus       272 ~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  272 GYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             EEEEEEEETTSEEEEEETTT-
T ss_pred             ceEEEEEECCCcEEEEECCCc
Confidence            667888889999999999865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00015  Score=68.76  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=97.1

Q ss_pred             cCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC----CCCeEEEEEcCCeEEEEECCccc
Q 014644          147 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       147 ~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~d~~v~iwd~~~~~  221 (421)
                      ..+|.++++| .||+|.|-.+.+ .+....+        ....++.+++++|+    ..+.+++|+.-| +.++.-+--.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~-~~~~~~~--------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFT-DDEITQY--------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccC-CccceeE--------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            5579999999 999999999884 3333332        24578999999998    236899999888 7766532211


Q ss_pred             ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccC-cccccccccC
Q 014644          222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYN  300 (421)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~  300 (421)
                      ..    ....           +..-.++|.++.|.  |.+||-+++-.|++||+.+ ++.+..+..... ..+.+.    
T Consensus       150 nk----~~v~-----------l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R~e~f----  207 (846)
T KOG2066|consen  150 NK----DSVV-----------LSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVRPELF----  207 (846)
T ss_pred             Cc----ccee-----------eecCccceEEEEec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCCcccC----
Confidence            11    0001           12236899999998  8899999885699999986 555555443322 111110    


Q ss_pred             CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                            -..+.|.++.++++ | ...+|+|..++
T Consensus       208 ------pphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  208 ------PPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             ------CCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence                  03678887765443 3 34578888877

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.21  E-value=0.0004  Score=58.78  Aligned_cols=220  Identities=10%  Similarity=0.065  Sum_probs=109.2

Q ss_pred             CCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      .+-...+..|+|+|+...|++ . ..+.|...+.+  ++.++.+.     +.+ .+....+++..++ .++++.-.++.+
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L   88 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDG-FGDYEGITYLGNG-RYVLSEERDQRL   88 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCC-CCCceeEEEECCC-EEEEEEcCCCcE
Confidence            566667999999998666665 5 67777777765  56666653     333 3557889998877 666666568999


Q ss_pred             EEEECCcccccc--cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCC--CCcceeEEe-
Q 014644          213 RLVDMRQSALCD--HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATFK-  286 (421)
Q Consensus       213 ~iwd~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~--~~~~~~~~~-  286 (421)
                      .++++.......  .....+..        .....++..+..++|+|.++.|+.+.+ .-..||.++.  ....+.... 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence            999885432110  00011111        001123556899999998776666544 4455555542  111111111 


Q ss_pred             -eccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644          287 -IHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  364 (421)
Q Consensus       287 -~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (421)
                       ....         ..-...+..+++++|. +.+++....+..|.++|.. + .....+.-..+                
T Consensus       161 ~~~~~---------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g----------------  213 (248)
T PF06977_consen  161 QDLDD---------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRG----------------  213 (248)
T ss_dssp             HHHH----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STT----------------
T ss_pred             ccccc---------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCc----------------
Confidence             1110         0112223468899996 5666667778888888843 3 22222111000                


Q ss_pred             ccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       365 ~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                               ..+            +...-.....++|.++|++.+++-.+..|.|
T Consensus       214 ---------~~g------------l~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  214 ---------FHG------------LSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             ---------GGG-------------SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             ---------ccC------------cccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence                     000            0000123458999999988888777777776

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.19  E-value=5.3e-05  Score=69.49  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      -.....|.+++++|+.+.|+.| .||+|.+||....-...          ....-....++|+|+| ..+++|+..|.+.
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ  324 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHPDG-AIFVVGSEQGELQ  324 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence            3567789999999999999999 99999999987332211          1223457889999999 9999999999999


Q ss_pred             EEECCccc
Q 014644          214 LVDMRQSA  221 (421)
Q Consensus       214 iwd~~~~~  221 (421)
                      +||+.-..
T Consensus       325 ~FD~ALsp  332 (545)
T PF11768_consen  325 CFDMALSP  332 (545)
T ss_pred             EEEeecCc
Confidence            99987654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00026  Score=61.80  Aligned_cols=84  Identities=17%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             eeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                      +..+.+ .+|...|++++|+|..+ ++..+ .+.+|+|.|++ ....+...       ..+ ..+++++|.-+..++|+.
T Consensus       184 kssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy-------~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  184 KSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSY-------IAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             chhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeehe-------ecc-CCceeeeeccCCcceeEE
Confidence            334444 78889999999999877 55556 89999999999 44444332       334 789999999998788888


Q ss_pred             EEcCCeEEEEECCccc
Q 014644          206 SSSRGFVRLVDMRQSA  221 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~  221 (421)
                      |-..|.|.+||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8899999999999864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.14  E-value=0.0042  Score=53.63  Aligned_cols=216  Identities=14%  Similarity=0.127  Sum_probs=123.7

Q ss_pred             EEEEEEEcC-CCCeEEEEeCCC-cEEEeecCCceeEEeeecCCCCCccccccccccccee-eccCCCCceeeeecccc--
Q 014644           37 NRVRWCAAP-NGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM-NEHNPPSFAHGYHLEWT--  111 (421)
Q Consensus        37 ~~v~~~~~~-~~~~l~t~s~d~-~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~--  111 (421)
                      ..++.  +| ....++.+-.-| ...+||..+++....... ..           ...++ -..+++++.++.+...+  
T Consensus         8 H~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~-----------gRHFyGHg~fs~dG~~LytTEnd~~   73 (305)
T PF07433_consen    8 HGVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP-----------GRHFYGHGVFSPDGRLLYTTENDYE   73 (305)
T ss_pred             cceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC-----------CCEEecCEEEcCCCCEEEEeccccC
Confidence            44555  45 345555565555 467788888773332211 11           11222 23456667666665553  


Q ss_pred             -cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEc--------CCcEEE-----------EeCCCCce
Q 014644          112 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD--------DLRINL-----------WNLEISDQ  171 (421)
Q Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--------d~~i~l-----------wd~~~~~~  171 (421)
                       ..+.+-+||....  .+.+..+ ..|.-.-..+.+.|||+.|+.+.        .|..++           .|.. +++
T Consensus        74 ~g~G~IgVyd~~~~--~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~  149 (305)
T PF07433_consen   74 TGRGVIGVYDAARG--YRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGA  149 (305)
T ss_pred             CCcEEEEEEECcCC--cEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCc
Confidence             2348999999832  3667777 67777778899999998888752        233333           3333 333


Q ss_pred             eeeeeecCCCCC--CccCCCeeEEEEecCCCCeEEEEEcCC-------eEEEEECCcccccccchhhhccccccCCCccc
Q 014644          172 CFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSF  242 (421)
Q Consensus       172 ~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  242 (421)
                      ++...     .+  .-|...|+.+++.++| ..++..-..|       .|-+++....  .    ..+..      ....
T Consensus       150 ll~q~-----~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~----~~~~~------p~~~  211 (305)
T PF07433_consen  150 LLEQV-----ELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L----RLLPA------PEEQ  211 (305)
T ss_pred             eeeee-----ecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c----eeccC------ChHH
Confidence            33332     23  3367789999999998 4444332222       1223322211  0    11110      0000


Q ss_pred             ccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeecc
Q 014644          243 FTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      ...-.+.+-+|++++++.++++.+-  +.+.+||..+ +..+.......
T Consensus       212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D  259 (305)
T PF07433_consen  212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPD  259 (305)
T ss_pred             HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCc
Confidence            1122568999999999998877653  8999999986 77766554433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.12  E-value=0.00013  Score=70.04  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---------C
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------R  209 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---------d  209 (421)
                      .|.-++.  +++++.+| ..|+|.+-|.+ .-+.+..+       ..|++.|..+.  -.| ++|++++.         |
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~-s~~~iht~-------~aHs~siSDfD--v~G-NlLitCG~S~R~~~l~~D  245 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPN-SFETIHTF-------DAHSGSISDFD--VQG-NLLITCGYSMRRYNLAMD  245 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCC-cCceeeee-------eccccceeeee--ccC-CeEEEeeccccccccccc
Confidence            3544444  57899999 99999999998 55555544       78999888754  456 77888763         5


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcc-eeEEe
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTP-VATFK  286 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~-~~~~~  286 (421)
                      ..|++||+|+.+..    .-+..              .-...-+.|.|. ...++..+. |+..+.|..+-+.+ ...+.
T Consensus       246 ~FvkVYDLRmmral----~PI~~--------------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~  307 (1118)
T KOG1275|consen  246 PFVKVYDLRMMRAL----SPIQF--------------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM  307 (1118)
T ss_pred             chhhhhhhhhhhcc----CCccc--------------ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence            67899999986543    11111              011244667774 234444444 99999994332333 22222


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      .+....             .+..++++++++.|+.|..+|.|.+|-
T Consensus       308 v~p~~s-------------~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  308 VNPNGS-------------GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EccCCC-------------cceeEEecCCCceEEEecccCcEeeec
Confidence            222110             016899999999999999999999998

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.11  E-value=0.0002  Score=66.03  Aligned_cols=182  Identities=10%  Similarity=0.068  Sum_probs=97.7

Q ss_pred             eeeccCCCCceeeeeccccccc--ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEE--eC
Q 014644           93 FMNEHNPPSFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NL  166 (421)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lw--d~  166 (421)
                      +....+.++...++...+....  .+.++++.++   +..+..  .-.+.-...+|+|||+.|+.+  .|+...||  |+
T Consensus       195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             eeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            3444555555555544443222  4555666655   222222  112233456899999998875  67765555  55


Q ss_pred             CCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEE--EECCcccccccchhhhccccccCCCcccc
Q 014644          167 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRL--VDMRQSALCDHSARILRDAAESHGSKSFF  243 (421)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~i--wd~~~~~~~~~~~~~~~~h~~~~~~~~~~  243 (421)
                      . +++..+ +       ....+.-..-.|+|+| +.|+..+ ..|.-.|  +|+..+...   ..++..           
T Consensus       270 ~-~~~~~~-L-------t~~~gi~~~Ps~spdG-~~ivf~Sdr~G~p~I~~~~~~g~~~~---riT~~~-----------  325 (425)
T COG0823         270 D-GKNLPR-L-------TNGFGINTSPSWSPDG-SKIVFTSDRGGRPQIYLYDLEGSQVT---RLTFSG-----------  325 (425)
T ss_pred             C-CCccee-c-------ccCCccccCccCCCCC-CEEEEEeCCCCCcceEEECCCCCcee---EeeccC-----------
Confidence            5 333222 1       2233333467899999 6555554 5565444  455544321   011111           


Q ss_pred             cccccceeEEEEcCCCCEEEEec--CCe--EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644          244 TEIIASISDIKFANDGQHLLSRD--YMN--LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  319 (421)
Q Consensus       244 ~~~~~~v~~~~~s~~~~~l~~~~--~~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  319 (421)
                          ..-..-.|+|||++|+..+  .|.  |.+.|+.+ +...+.+......                ...+|.|+++.+
T Consensus       326 ----~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt~~~~~----------------e~ps~~~ng~~i  384 (425)
T COG0823         326 ----GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILTSTYLN----------------ESPSWAPNGRMI  384 (425)
T ss_pred             ----CCCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEccccccC----------------CCCCcCCCCceE
Confidence                1222778999999998764  354  66677665 3223333322221                356788888887


Q ss_pred             EEeeC
Q 014644          320 ATGSY  324 (421)
Q Consensus       320 ~~~s~  324 (421)
                      +..+.
T Consensus       385 ~~~s~  389 (425)
T COG0823         385 MFSSG  389 (425)
T ss_pred             EEecc
Confidence            75554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.07  E-value=7.1e-05  Score=71.81  Aligned_cols=175  Identities=10%  Similarity=0.059  Sum_probs=119.4

Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      ..++-|+....+..+|+++.+..    +.....             .+.+.-  +..+++++.+|.. |+|.+-|.++ -
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~-------------a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s-~  207 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKET----RTTNVS-------------ASGVTI--MRYNNRNLFCGDTRGTVFLRDPNS-F  207 (1118)
T ss_pred             cceeecchhhheeeeecccceee----eeeecc-------------CCceEE--EEecCcEEEeecccceEEeecCCc-C
Confidence            55777887888889999886543    222220             112333  3456889999977 9999999987 8


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---------CCeEEEEecCCCCCceeEEecCCCCc
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------SNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      +.++++..|.+.+                 ..|+-.|+.|++++.         |..|++||++.- ..+..++-+.++ 
T Consensus       208 ~~iht~~aHs~si-----------------SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-  268 (1118)
T KOG1275|consen  208 ETIHTFDAHSGSI-----------------SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-  268 (1118)
T ss_pred             ceeeeeeccccce-----------------eeeeccCCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-
Confidence            9999999999854                 466668999998875         456899999986 445555555555 


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCC---CCCc---cccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGH---HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~---~~~~---~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .-+.|.|....      .++..+..|. .+-+   ..++   ..........+..+++|+.++.||.|. .|.+-+|.
T Consensus       269 ~flrf~Psl~t------~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  269 QFLRFHPSLTT------RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhhcccccc------eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            34456665432      4666676666 4442   2222   111223344589999999999999998 67788884

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.02  E-value=0.0009  Score=66.61  Aligned_cols=234  Identities=17%  Similarity=0.160  Sum_probs=127.9

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .+.|.++.|..+...++.+ ..|.|.+-|..+.  ...+.       ..-...|.+++|+||+ ..++..+.++++.+-+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eiv-------g~vd~GI~aaswS~De-e~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIV-------GNVDNGISAASWSPDE-ELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeee-------eeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence            3689999999998888888 8999998888732  22222       2345679999999999 9999888888876543


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      - +-.+...  +.+..  +        ....+..-.+-|-..... +-|+.|.....+.....+.......+.+.     
T Consensus       138 ~-~f~~i~E--~~L~~--d--------~~~~sk~v~VGwGrkeTq-frgs~gr~~~~~~~~~ek~~~~~~~~~~~-----  198 (1265)
T KOG1920|consen  138 K-DFEPIAE--KPLDA--D--------DERKSKFVNVGWGRKETQ-FRGSEGRQAARQKIEKEKALEQIEQDDHK-----  198 (1265)
T ss_pred             c-cccchhc--ccccc--c--------cccccccceeccccccee-eecchhhhcccccccccccccchhhccCC-----
Confidence            2 1111100  00000  0        000112222333221111 11111222222211101101111112221     


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEee-----CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeee
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                                 ++++|--||+++|+..     ....|++||-+ + .+..+-....+.-.+++|.|.       +..+++
T Consensus       199 -----------~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPs-------gs~iA~  258 (1265)
T KOG1920|consen  199 -----------TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPS-------GSLIAA  258 (1265)
T ss_pred             -----------ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCC-------CCeEee
Confidence                       4799999999998732     23789999977 3 343333333444457888886       336666


Q ss_pred             ecccCc----ccCCCCCcccc----cccc-ccCeEEEEEccCCCeEEE---ecCCc-eEEEe
Q 014644          372 GLYRQA----HENSSSGHHEL----SYNL-SSKLLHLAWHPTTNLIAC---ANGNS-LFFHY  420 (421)
Q Consensus       372 g~~d~~----~iw~~~~~~~~----~~~~-~~~v~~~~~spd~~~la~---~~~~~-~~i~~  420 (421)
                      -..++.    .++...++...    .... ...|..++|+.++.+||+   ...+. +.+|.
T Consensus       259 iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             eeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            544433    34422222111    1111 233899999999999998   44444 88885

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.01  E-value=0.00013  Score=68.10  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=84.4

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .|.--++  +..+.+++.|++-|.|.+++-..+.+.....                                        
T Consensus        35 ~v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~----------------------------------------   72 (726)
T KOG3621|consen   35 RVKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----------------------------------------   72 (726)
T ss_pred             eEEEEEe--ecCCceEEEecccceEEEEecCchhhhcccc----------------------------------------
Confidence            3443444  5678999999999999999977765322211                                        


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  193 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  193 (421)
                                          .+-.+.+..+..+++..++|+| ..|.|.++.++. ++.-...-+.+.. ..|...|+++
T Consensus        73 --------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~~d-~~~~~rVTal  130 (726)
T KOG3621|consen   73 --------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTPCD-KSHKCRVTAL  130 (726)
T ss_pred             --------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeecccc-ccCCceEEEE
Confidence                                1223345566778888888888 999999998874 3222111111111 3478999999


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCc
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                      +|++++ ..+++|...|.|..-.+..
T Consensus       131 ~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  131 EWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             Eecccc-cEEeecCCCceEEEEEech
Confidence            999999 9999999999999887776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.99  E-value=3.4e-06  Score=77.43  Aligned_cols=199  Identities=11%  Similarity=0.056  Sum_probs=122.8

Q ss_pred             cceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE----cCC
Q 014644          139 FNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRG  210 (421)
Q Consensus       139 ~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~----~d~  210 (421)
                      ..+.|+++.-+  ...++.| .+|.|-+-.++..... ..+       .+++..+.++++|++-..+.||.|-    .|.
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~-------tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV-------TPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee-------cccccccccccccccccHHHHHhhhhhhcccC
Confidence            44666666543  3467778 8999999888733222 222       2678889999999997535666553    456


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeecc
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      .+.|||+.++-....            ....+..+......+++|..+.+++.+|.. ..+.++|++........+  ..
T Consensus       130 ~~~Iwdi~s~ltvPk------------e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nT  195 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPK------------ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NT  195 (783)
T ss_pred             CccceecccccCCCc------------cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hh
Confidence            799999987521100            000111112345568899988889989866 899999998311111111  11


Q ss_pred             CcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEe-cCCCCCceeEEecCCC----CccceeeecCCcccc
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS-HGVGSAGGITVEAGKN----ENRKPILQAAPRARR  363 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  363 (421)
                      ..+               ..+..+| .+.|+++-. ||.|.+|| ...-+.....+.....    .+..++++|.++|. 
T Consensus       196 k~v---------------qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl-  258 (783)
T KOG1008|consen  196 KYV---------------QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL-  258 (783)
T ss_pred             hhc---------------ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch-
Confidence            111               3567778 677877666 99999999 4433333333333333    37888999987554 


Q ss_pred             cccceeeeecccCc--ccC
Q 014644          364 SSLSNLTRGLYRQA--HEN  380 (421)
Q Consensus       364 ~~~~~l~~g~~d~~--~iw  380 (421)
                           |++-.+|..  +++
T Consensus       259 -----la~l~RdS~tIrly  272 (783)
T KOG1008|consen  259 -----LAVLSRDSITIRLY  272 (783)
T ss_pred             -----hhhhccCcceEEEe
Confidence                 555555544  554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.97  E-value=0.0085  Score=51.17  Aligned_cols=186  Identities=12%  Similarity=0.015  Sum_probs=93.1

Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      ...+..++..++   +.+..+ .. .+.+...... ++..++.+ .++.|..+|..++....+......   ... ....
T Consensus        45 ~~~l~~~d~~tG---~~~W~~-~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~-~~~~  114 (238)
T PF13360_consen   45 DGNLYALDAKTG---KVLWRF-DL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS---PPA-GVRS  114 (238)
T ss_dssp             TSEEEEEETTTS---EEEEEE-EC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS---CTC-STB-
T ss_pred             CCEEEEEECCCC---CEEEEe-ec-cccccceeee-cccccccccceeeeEecccCCcceeeeeccccc---ccc-cccc
Confidence            335566666555   444443 11 1221111122 34444554 788999999885555554221110   001 1112


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe-E
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-L  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i  270 (421)
                      .......+ ..++.+..++.|..+|+++|+...+...  ..   .+... .+.........+.+. ++..+++..++. +
T Consensus       115 ~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~---~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~g~~~  186 (238)
T PF13360_consen  115 SSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPV--GE---PRGSS-PISSFSDINGSPVIS-DGRVYVSSGDGRVV  186 (238)
T ss_dssp             -SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEES--ST---T-SS---EEEETTEEEEEECC-TTEEEEECCTSSEE
T ss_pred             ccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeec--CC---CCCCc-ceeeecccccceEEE-CCEEEEEcCCCeEE
Confidence            22233335 7788888899999999999875421100  00   00000 000000111233333 454444444554 5


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .+ |+.+ ++.+.... ...                 ......+++..|+.++.++.|..||+.++
T Consensus       187 ~~-d~~t-g~~~w~~~-~~~-----------------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  187 AV-DLAT-GEKLWSKP-ISG-----------------IYSLPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             EE-ETTT-TEEEEEEC-SS------------------ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             EE-ECCC-CCEEEEec-CCC-----------------ccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence            55 9986 66443222 111                 11224567788888889999999999998

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.96  E-value=0.00024  Score=66.49  Aligned_cols=123  Identities=9%  Similarity=0.055  Sum_probs=85.8

Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      +...|.--+++..+ .+++.|+.-|.+++|+-..+...    . ...           .+..+.+..+..+++..++|+|
T Consensus        32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~----~-~~~-----------~~~~~~~~~~~vs~~e~lvAag   94 (726)
T KOG3621|consen   32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR----K-LKN-----------EGATGITCVRSVSSVEYLVAAG   94 (726)
T ss_pred             CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhh----c-ccc-----------cCccceEEEEEecchhHhhhhh
Confidence            34455555677777 89999999999999997765432    1 111           0124567788899999888988


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      ++ |.|.++.+......-..+..+....       +..   .|++++|+++++.+++|...|.|..-.+..
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~-------~~~---rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKS-------HKC---RVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEeehhhccCCCcceeecccccc-------CCc---eEEEEEecccccEEeecCCCceEEEEEech
Confidence            88 9999999876333222222222110       011   238999999999999999999999888876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=9.5e-06  Score=77.31  Aligned_cols=162  Identities=14%  Similarity=0.137  Sum_probs=110.3

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ ..|....+|++|+-+.+.|+.| ..|.|+++++.+ +....       ....|..+|+-+.-+.+|...|.++
T Consensus      1092 r~w~~f-rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~-------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1092 RSWRSF-RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEE-------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             ccchhh-hccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccc-------cccccccccccccccCCcceeeeec
Confidence            455667 7888999999999999999999 999999999994 43332       2278999999999999994444444


Q ss_pred             EcCC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE
Q 014644          207 SSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       207 ~~d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~  284 (421)
                      +... ...+|++..-   ....+.|..                 -.++.|+..-..-+.|+. ....+||+.+ +.++.+
T Consensus      1163 s~S~PlsaLW~~~s~---~~~~Hsf~e-----------------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT-~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST---GGPRHSFDE-----------------DKAVKFSNSLQFRALGTEADDALLYDVQT-CSPLQT 1221 (1516)
T ss_pred             cccCchHHHhccccc---cCccccccc-----------------cceeehhhhHHHHHhcccccceEEEeccc-CcHHHH
Confidence            4443 5678998762   112233333                 467888876554455555 7899999998 666555


Q ss_pred             E-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          285 F-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      + .+.-...      |++      ..+.|+|+..+++-   ||.  +||++..
T Consensus      1222 ylt~~~~~~------y~~------n~a~FsP~D~LIln---dGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1222 YLTDTVTSS------YSN------NLAHFSPCDTLILN---DGV--LWDVRIP 1257 (1516)
T ss_pred             hcCcchhhh------hhc------cccccCCCcceEee---Cce--eeeeccH
Confidence            3 2221111      111      46789999887763   443  6998864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00041  Score=60.56  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             cccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCE
Q 014644          242 FFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLH  318 (421)
Q Consensus       242 ~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~  318 (421)
                      ++..+...|..++|+|..+ ++..++- ..|+|.|+++ ..++..+..+...                ++++|.-| ..+
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~~----------------wSC~wDlde~h~  250 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQI----------------WSCCWDLDERHV  250 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCCc----------------eeeeeccCCcce
Confidence            5666778899999999877 4555554 8999999997 7888888877543                79999986 456


Q ss_pred             EEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          319 FATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      |+.|-..|.|.|||++..+.....+.+
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhh
Confidence            888889999999999976554444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.0047  Score=57.34  Aligned_cols=216  Identities=11%  Similarity=0.035  Sum_probs=110.2

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ......+.++|+|++++.+.||.-.|+... ..+..            ..+.-..++|.+.  +.+|+-....+|.++.-
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k------------~~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNK------------AFGSGLSFVWSSR--NRYAVLESSSTIKIYKN   96 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEE------------EEEE-SEEEE-TS--SEEEEE-TTS-EEEEET
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccc------------ccCceeEEEEecC--ccEEEEECCCeEEEEEc
Confidence            334789999999999999988888888844 22211            1244567889995  45777777889999632


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      -+....    +.+..              ...+..+-.   |.+|+..+++.|.+||+.+ ++.+.++....  +     
T Consensus        97 ~~~~~~----k~i~~--------------~~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v-----  147 (443)
T PF04053_consen   97 FKNEVV----KSIKL--------------PFSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V-----  147 (443)
T ss_dssp             TEE-TT-----------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E--------
T ss_pred             Cccccc----eEEcC--------------CcccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C-----
Confidence            222211    22222              122344432   8888877767899999987 88888876543  1     


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC--------CC--ceeEEecCCCCccceeeecCCcccccccc
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG--------SA--GGITVEAGKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                                ..+.|+++|.+++..+.+ .++|++.+..        +.  ....+..-...|.+.+|..+        -
T Consensus       148 ----------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--------~  208 (443)
T PF04053_consen  148 ----------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--------C  208 (443)
T ss_dssp             ----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--------E
T ss_pred             ----------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--------E
Confidence                      589999999999888754 6777665422        00  22333333566777777655        1


Q ss_pred             eeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          368 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       368 ~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      ++.+... ..+.+- ++......-...++.-+...|..+.|.+.. +.++..
T Consensus       209 fiYtT~~-~lkYl~-~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~  258 (443)
T PF04053_consen  209 FIYTTSN-HLKYLV-NGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS  258 (443)
T ss_dssp             EEEE-TT-EEEEEE-TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred             EEEEcCC-eEEEEE-cCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence            3333333 222221 112222222244555666666555555554 334443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.91  E-value=0.0056  Score=61.29  Aligned_cols=215  Identities=11%  Similarity=0.042  Sum_probs=115.1

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      +.|.++.|  ..+.+.+..+..+|.|.+-|.++..+.....  ....|.+++|++...- ++.......-.+.+-.++..
T Consensus        69 ~~i~s~~f--l~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~-l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQF--LADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEEL-LALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEE--ecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcE-EEEEeCCcEEEEEeccccch
Confidence            57889999  4777888888889999999988876544422  3444555555543322 22221111111111111100


Q ss_pred             c-------------ceeE-Eee-cccceeeeee-----ee-----cC--CCCcceEEEeecCCCCEEEEE-----cC-Cc
Q 014644          114 M-------------ATKI-ANV-GNSVHARCQK-----VY-----PH--AHDFNINSISNNSDCETFVSA-----DD-LR  160 (421)
Q Consensus       114 ~-------------~~~~-~~~-~~~~~~~~~~-----~~-----~~--~h~~~v~~l~~~~~~~~l~s~-----~d-~~  160 (421)
                      .             .+.+ |-- ++...+.+.+     ..     ..  .-.+.=..+.|--||+++|++     .+ +.
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            0             0111 111 0111111100     00     00  001112458999999999982     34 89


Q ss_pred             EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccC
Q 014644          161 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESH  237 (421)
Q Consensus       161 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~  237 (421)
                      |++||-+  +.+-.+-       ....+-=.+++|-|.| ..+++-.   .|+.|.++.-+.-+ .....-.+..     
T Consensus       224 irV~drE--g~Lns~s-------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~-----  287 (1265)
T KOG1920|consen  224 IRVYDRE--GALNSTS-------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPL-----  287 (1265)
T ss_pred             EEEeccc--chhhccc-------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcc-ccccccCCcc-----
Confidence            9999987  3322211       1122334578999998 7877754   45678888744321 1110011111     


Q ss_pred             CCcccccccccceeEEEEcCCCCEEEEe---cC-CeEEEEECCC
Q 014644          238 GSKSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKLWDIRM  277 (421)
Q Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~-~~i~i~d~~~  277 (421)
                              ...++..++|+.++..|+..   .. ..|++|-+.+
T Consensus       288 --------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  288 --------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             --------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence                    12348999999999999873   33 4599999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.91  E-value=0.003  Score=53.93  Aligned_cols=149  Identities=13%  Similarity=0.070  Sum_probs=82.4

Q ss_pred             cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccccc
Q 014644          157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  236 (421)
Q Consensus       157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~  236 (421)
                      ++++|..||..++....+ ..++    ..... ..+. ..+++ ..+++++.++.|..||..+++..      +.. .. 
T Consensus         1 ~~g~l~~~d~~tG~~~W~-~~~~----~~~~~-~~~~-~~~~~-~~v~~~~~~~~l~~~d~~tG~~~------W~~-~~-   64 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWS-YDLG----PGIGG-PVAT-AVPDG-GRVYVASGDGNLYALDAKTGKVL------WRF-DL-   64 (238)
T ss_dssp             -TSEEEEEETTTTEEEEE-EECS----SSCSS-EEET-EEEET-TEEEEEETTSEEEEEETTTSEEE------EEE-EC-
T ss_pred             CCCEEEEEECCCCCEEEE-EECC----CCCCC-ccce-EEEeC-CEEEEEcCCCEEEEEECCCCCEE------EEe-ec-
Confidence            468899999974444443 3221    11111 1211 22344 67777789999999999988743      221 00 


Q ss_pred             CCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCC
Q 014644          237 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGD  315 (421)
Q Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  315 (421)
                                ...+.......++..++...++.++.+|..+ ++.+... ........ .         .  .......+
T Consensus        65 ----------~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~-~---------~--~~~~~~~~  121 (238)
T PF13360_consen   65 ----------PGPISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG-V---------R--SSSSPAVD  121 (238)
T ss_dssp             ----------SSCGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS-T---------B----SEEEEE
T ss_pred             ----------cccccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc-c---------c--cccCceEe
Confidence                      0111111222344444444458999999886 8877763 33211110 0         0  12222224


Q ss_pred             CCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          316 GLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       316 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      +..++.+..++.|+.+|+.++ ...-....
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~  150 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTG-KLLWKYPV  150 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTT-EEEEEEES
T ss_pred             cCEEEEEeccCcEEEEecCCC-cEEEEeec
Confidence            778888888999999999998 44434433

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.00039  Score=65.77  Aligned_cols=154  Identities=17%  Similarity=0.167  Sum_probs=105.3

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCC-----------CCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----------CNLLAYSS  207 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~l~s~~  207 (421)
                      ..-.++.|+|.| +||.|....|.+-|.. .-+.++.+       +-|+..|+.+.|.|-.           .-+|+++.
T Consensus        16 sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iqsi-------e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD   86 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQSI-------ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD   86 (1062)
T ss_pred             ccccccccCccc-eEEEecCceEEEEehh-hhhhhhcc-------ccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence            346788999877 7788877788888987 55666554       6788999999998742           12567777


Q ss_pred             cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC---CCCE-EEEecC-CeEEEEECCCCCcce
Q 014644          208 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN---DGQH-LLSRDY-MNLKLWDIRMDSTPV  282 (421)
Q Consensus       208 ~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~---~~~~-l~~~~~-~~i~i~d~~~~~~~~  282 (421)
                      ..|.|.+||...+...    ..+..             +..++..++|-+   +.+. |++-.. ..+.+|+..+ |+.+
T Consensus        87 ~~GrIil~d~~~~s~~----~~l~~-------------~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~  148 (1062)
T KOG1912|consen   87 ISGRIILVDFVLASVI----NWLSH-------------SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKF  148 (1062)
T ss_pred             ccCcEEEEEehhhhhh----hhhcC-------------CCcchhheeeeeccCcchheeEEecCCcEEEEEEccC-Ccee
Confidence            8899999999886543    22333             366778888876   4534 443333 8999999987 7776


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecC
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ..+.......               .++.+.| |.+.+..-+..|.+.+-+.-
T Consensus       149 Wk~~ys~~iL---------------s~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  149 WKYDYSHEIL---------------SCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             eccccCCcce---------------eeeeeCCCCcceEEEEccCceEEEEecc
Confidence            6654433321               4577777 56666666666776666543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00016  Score=66.69  Aligned_cols=113  Identities=18%  Similarity=0.323  Sum_probs=77.4

Q ss_pred             eeeeccccccCCCccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccc
Q 014644           11 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE   90 (421)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~   90 (421)
                      |.|..+|.+  .++.-.  ..-...|.-+.|  +|.-.++|++..+|.|.+..+.-.                       
T Consensus         2 ~pf~~qf~s--~~~~~~--~~l~~~i~~~ew--nP~~dLiA~~t~~gelli~R~n~q-----------------------   52 (665)
T KOG4640|consen    2 YPFKHQFES--NETNGV--MSLPINIKRIEW--NPKMDLIATRTEKGELLIHRLNWQ-----------------------   52 (665)
T ss_pred             CCccccccc--chhhhh--hccccceEEEEE--cCccchhheeccCCcEEEEEeccc-----------------------
Confidence            455556555  222222  233567889999  678889999999999999987632                       


Q ss_pred             cceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceE-EEeecCCCCEEEEE-cCCcEEEEeCCC
Q 014644           91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSA-DDLRINLWNLEI  168 (421)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~-~d~~i~lwd~~~  168 (421)
                                                |+|...             -|...++ +++|.|||+.||.| .||+|++.|+.+
T Consensus        53 --------------------------Rlwtip-------------~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   53 --------------------------RLWTIP-------------IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             --------------------------eeEecc-------------CCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence                                      344432             2344454 99999999999999 999999999995


Q ss_pred             CceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644          169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPI  198 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  198 (421)
                      +......       ...-..+|.++-|.|.
T Consensus        94 ~~~l~~~-------~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   94 GGRLVSF-------LFSVETDISKGIWDRI  116 (665)
T ss_pred             CCceecc-------ccccccchheeecccc
Confidence            5443321       1223466777777753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.78  E-value=0.018  Score=48.91  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCcee-----eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      +....+++..++.++++. .++.+.+.++......     ++.+.+.  ....+...+..++|+|.+ +.|+.+-...-.
T Consensus        65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~--~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~  141 (248)
T PF06977_consen   65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG--FPNKGNKGFEGLAYDPKT-NRLFVAKERKPK  141 (248)
T ss_dssp             SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTT-TEEEEEEESSSE
T ss_pred             CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc--cccCCCcceEEEEEcCCC-CEEEEEeCCCCh
Confidence            346678888888888888 8999999988432221     1222111  112345668999999998 667667766666


Q ss_pred             EEEECCc--cc--ccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          213 RLVDMRQ--SA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       213 ~iwd~~~--~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      ++|.++.  ..  ........+..          ....-..+.+++++|.. ++++.+.. ..|..+|..  ++++..+.
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~  209 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDD----------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLS  209 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE
T ss_pred             hhEEEccccCccceeecccccccc----------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEE
Confidence            6776653  11  00000000110          01112357899999964 44444444 889999953  77777665


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                      ..........      .+.-.-.++|.++|+ |+..++-+..+++
T Consensus       210 L~~g~~gl~~------~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  210 LDRGFHGLSK------DIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -STTGGG-SS---------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             eCCcccCccc------ccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence            5442110000      000015899999986 5556676766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.0024  Score=61.33  Aligned_cols=71  Identities=10%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      .+++++|+|..-.|+.| .-|.+.+|... ..+.....       ..|+.+|..+.|+|+| ..++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~e~htv~-------~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTN-TTETHTVV-------ETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecC-Cceeeeec-------cCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            46789999998889999 89999999987 33333322       6699999999999999 999999999999999876


Q ss_pred             c
Q 014644          219 Q  219 (421)
Q Consensus       219 ~  219 (421)
                      .
T Consensus       132 ~  132 (1416)
T KOG3617|consen  132 V  132 (1416)
T ss_pred             e
Confidence            4

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.013  Score=56.73  Aligned_cols=202  Identities=8%  Similarity=-0.042  Sum_probs=118.5

Q ss_pred             eecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC-eeEEEEecCCCCeEEEEEcCC-----eEEEEEC
Q 014644          145 SNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSSSRG-----FVRLVDM  217 (421)
Q Consensus       145 ~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~s~~~d~-----~v~iwd~  217 (421)
                      +|++.+..++.| .+|.|.+.+-.  -+..+-+       ..+... |..+ +.-++..+|++.+.|+     .|++||+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~f-------qa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGF-------QAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehh-------eecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecc
Confidence            367778889999 99998887754  3332222       334333 4444 3333336788877664     5899999


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCC-CcceeEEeeccCccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMD-STPVATFKIHEHLRPKL  295 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~-~~~~~~~~~~~~~~~~~  295 (421)
                      ..-..... ...+..|..-+   ..++....++..++.+.+-+.+|.|= +|.|.++.-+-. .+-.+.-..|.+     
T Consensus       100 ek~~~n~s-P~c~~~~ri~~---~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-----  170 (933)
T KOG2114|consen  100 EKVDKNNS-PQCLYEHRIFT---IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-----  170 (933)
T ss_pred             cccCCCCC-cceeeeeeeec---cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----
Confidence            76432110 01111111000   01122256889999999988899984 499988853210 011111111211     


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeeccc
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  375 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d  375 (421)
                           .++   |+++++-.+++.++-...-..|.+|.+.........+..|..+.++..+++.       ...+++++..
T Consensus       171 -----~~p---ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~-------t~qfIca~~e  235 (933)
T KOG2114|consen  171 -----KEP---ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG-------TYQFICAGSE  235 (933)
T ss_pred             -----CCC---ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCC-------CccEEEecCc
Confidence                 112   2789998888874444445688999998554346668888888888888876       2346666655


Q ss_pred             CcccC
Q 014644          376 QAHEN  380 (421)
Q Consensus       376 ~~~iw  380 (421)
                      ...++
T Consensus       236 ~l~fY  240 (933)
T KOG2114|consen  236 FLYFY  240 (933)
T ss_pred             eEEEE
Confidence            55555

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.59  E-value=0.027  Score=52.23  Aligned_cols=99  Identities=15%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~  279 (421)
                      ..++.++.+|.+..+|+.+++..      |.. .            ......+..  ++..+..++ ++.+..+|..+ +
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~------------~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G  314 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIV------WKR-E------------YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG-G  314 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEE------Eee-c------------CCCccCcEE--ECCEEEEEcCCCeEEEEECCC-C
Confidence            46777788999999999988633      322 0            001111222  344554444 49999999976 6


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      +.+-.........  .            .+...  .+..|+.++.+|.|+..|..+++
T Consensus       315 ~~~W~~~~~~~~~--~------------~sp~v--~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        315 VELWSQSDLLHRL--L------------TAPVL--YNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             cEEEcccccCCCc--c------------cCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            6543322111100  0            12222  24567889999999999999883

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.0032  Score=58.44  Aligned_cols=139  Identities=11%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ......+.++|+| +.++. +.||.-.++.....+.     +.                 .+......|.+.+++.+.-.
T Consensus        32 ~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~-----k~-----------------~G~g~~~vw~~~n~yAv~~~   87 (443)
T PF04053_consen   32 EIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRN-----KA-----------------FGSGLSFVWSSRNRYAVLES   87 (443)
T ss_dssp             SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEE-----EE-----------------EEE-SEEEE-TSSEEEEE-T
T ss_pred             CcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCcc-----cc-----------------cCceeEEEEecCccEEEEEC
Confidence            3457899999999 77766 6688888887433221     10                 34567888999666544444


Q ss_pred             CCeEEEE-ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 YMNLKLW-DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 ~~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      .++|.|+ ++.  ......+......                ..+ |.  |.+|+..+. +.|.+||+.++ .....+. 
T Consensus        88 ~~~I~I~kn~~--~~~~k~i~~~~~~----------------~~I-f~--G~LL~~~~~-~~i~~yDw~~~-~~i~~i~-  143 (443)
T PF04053_consen   88 SSTIKIYKNFK--NEVVKSIKLPFSV----------------EKI-FG--GNLLGVKSS-DFICFYDWETG-KLIRRID-  143 (443)
T ss_dssp             TS-EEEEETTE--E-TT-----SS-E----------------EEE-E---SSSEEEEET-TEEEEE-TTT---EEEEES-
T ss_pred             CCeEEEEEcCc--cccceEEcCCccc----------------ceE-Ec--CcEEEEECC-CCEEEEEhhHc-ceeeEEe-
Confidence            5889996 332  3333334332211                122 22  777776665 48999999987 2221111 


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                                                                     -..|..+.|+++++++|..+.+.++|++
T Consensus       144 -----------------------------------------------v~~vk~V~Ws~~g~~val~t~~~i~il~  171 (443)
T PF04053_consen  144 -----------------------------------------------VSAVKYVIWSDDGELVALVTKDSIYILK  171 (443)
T ss_dssp             -----------------------------------------------S-E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred             -----------------------------------------------cCCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence                                                           1237789999999999999999999874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.57  E-value=0.066  Score=49.68  Aligned_cols=149  Identities=13%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC--CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      ..++.+ .++.|..+|.+++....+.- .....  ..+...+    ...  + ..++.++.++.+..+|..+++..    
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~----  228 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVN-LDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLI----  228 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeec-CCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhh----
Confidence            355556 88999999998554444331 11000  0011111    111  2 35666788999999999887643    


Q ss_pred             hhhccccccCCCcccccccccceeEEEEcC---CCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcc
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI  304 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (421)
                        |......+.....    ......+.-+|   ++..++.+.++.+..+|..+ ++.+-.......              
T Consensus       229 --W~~~~~~~~~~~~----~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~--------------  287 (394)
T PRK11138        229 --WQQRISQPTGATE----IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV--------------  287 (394)
T ss_pred             --heeccccCCCccc----hhcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc--------------
Confidence              2210000000000    00001111122   34444444458999999986 765544321110              


Q ss_pred             eeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       305 ~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                         ..+..  .+..|+.++.+|.++.+|..++.
T Consensus       288 ---~~~~~--~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        288 ---NDFAV--DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             ---cCcEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence               11222  45677888889999999998873

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.47  E-value=0.026  Score=55.69  Aligned_cols=143  Identities=13%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             CeEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--------CCEEEEecCCeEE
Q 014644          201 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------GQHLLSRDYMNLK  271 (421)
Q Consensus       201 ~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~~~~~~~i~  271 (421)
                      ++|+.. .....|+-.|+..|+.+    ..|..|.            ..+|.  .+.|+        ...++.-++..+.
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~------------~~~v~--~~~p~~K~aqlt~e~tflGls~n~lf  555 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHD------------DIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLF  555 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEE----EEeecCC------------Cccee--EecccccccccCCCceEEEECCCceE
Confidence            444443 34577888899988765    5566531            11233  33332        2233333558899


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcc
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR  351 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  351 (421)
                      .||.|..+..+..-..+...         ...-  ..+++-+.+| +||+|+.+|.||+||- .+ ..            
T Consensus       556 riDpR~~~~k~v~~~~k~Y~---------~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g-~~------------  609 (794)
T PF08553_consen  556 RIDPRLSGNKLVDSQSKQYS---------SKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LG-KR------------  609 (794)
T ss_pred             EeccCCCCCceeeccccccc---------cCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cc-hh------------
Confidence            99999754322211222211         1111  1566666666 6899999999999982 22 10            


Q ss_pred             ceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          352 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       352 ~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +-                                 ..+-+...+|..+..+.||++|++.+...|.++.
T Consensus       610 AK---------------------------------T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  610 AK---------------------------------TALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             hh---------------------------------hcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            00                                 1111346889999999999999999988887765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.001  Score=61.70  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=61.7

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee-EEEEecCCCCeEEEEEcCCeEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      ...|.-+.|+|.-.++|.+ .+|.|-+..++ -.+ +-++       +-+...++ +++|.||| +.|+.|-.||+|++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwti-------p~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTI-------PIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cce-eEec-------cCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence            3457788999999999999 99999999887 333 3332       43445555 99999999 999999999999999


Q ss_pred             ECCccccc
Q 014644          216 DMRQSALC  223 (421)
Q Consensus       216 d~~~~~~~  223 (421)
                      |+.++...
T Consensus        90 Dve~~~~l   97 (665)
T KOG4640|consen   90 DVEKGGRL   97 (665)
T ss_pred             EccCCCce
Confidence            99988654

>smart00320 WD40 WD40 repeats

Probab=97.38  E-value=0.0005  Score=38.95  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEe
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  165 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd  165 (421)
                      ++...+ ..|...|.++.|.+++..++++ .|+.+++|+
T Consensus         3 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455566 6888999999999999999998 999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.37  E-value=0.056  Score=49.26  Aligned_cols=238  Identities=13%  Similarity=0.089  Sum_probs=119.4

Q ss_pred             cCCCCEEEEE----------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          147 NSDCETFVSA----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       147 ~~~~~~l~s~----------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      |||+++++..          ..+.+.+||++ .++...+        ......+....|+|+| +.++... ++.|.+++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~~~~l--------~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~   69 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGEITPL--------TPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRD   69 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTEEEES--------S-EETTBSEEEE-SSS-TEEEEEE-TTEEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCceEEC--------cCCccccccceeecCC-CeeEEEe-cCceEEEE
Confidence            5788887763          14568899998 4444332        2225678899999999 8888765 67899998


Q ss_pred             CCcccccccchhhhccccccCCCccccccc---------ccceeEEEEcCCCCEEEEe--cCCe---EEEEECCCCCc--
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEI---------IASISDIKFANDGQHLLSR--DYMN---LKLWDIRMDST--  280 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~--~~~~---i~i~d~~~~~~--  280 (421)
                      +..+...    ++-..   +  ....+.+-         -+.-..+-|||||++|+..  ++..   +.+-+......  
T Consensus        70 ~~~~~~~----~lT~d---g--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~y  140 (353)
T PF00930_consen   70 LATGQET----QLTTD---G--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQY  140 (353)
T ss_dssp             STTSEEE----ESES-------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS
T ss_pred             CCCCCeE----Eeccc---c--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccC
Confidence            8766322    11110   0  00000000         1234678999999999865  2233   33333332111  


Q ss_pred             -ceeEEee-----------------ccCcccccccc---cCCCcceeeeEEEEcCCCCEEEE--eeCC---CeEEEEecC
Q 014644          281 -PVATFKI-----------------HEHLRPKLCDL---YNNDSIFDKFECSVSGDGLHFAT--GSYS---NLLRIFSHG  334 (421)
Q Consensus       281 -~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~sp~~~~l~~--~s~d---g~i~iwd~~  334 (421)
                       .+..++-                 .......+...   ...+..  +..+.|.++++.|+.  .+.+   ..+.+.|..
T Consensus       141 p~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y--l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~  218 (353)
T PF00930_consen  141 PEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY--LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS  218 (353)
T ss_dssp             -EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE--EEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred             CcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC--cccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence             1222211                 11111011111   122332  378999999884433  2333   247778887


Q ss_pred             CCCCceeEEecCCCCcc---ceeee-cCCcccccccceeeeecccCc-ccC---CCCCccccccccccCeEE-EEEccCC
Q 014644          335 VGSAGGITVEAGKNENR---KPILQ-AAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLH-LAWHPTT  405 (421)
Q Consensus       335 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~l~~g~~d~~-~iw---~~~~~~~~~~~~~~~v~~-~~~spd~  405 (421)
                      ++.............+.   ...+. ++  +    ..+|.....+|- .|+   ..++....+....-.|.. +.|.+++
T Consensus       219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~--~----~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~  292 (353)
T PF00930_consen  219 TGETRVVLEETSDGWVDVYDPPHFLGPD--G----NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDN  292 (353)
T ss_dssp             TTTCEEEEEEESSSSSSSSSEEEE-TTT--S----SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTS
T ss_pred             CCceeEEEEecCCcceeeecccccccCC--C----CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCC
Confidence            76443333333444432   23333 22  1    224444447776 777   233333333344455644 7889998


Q ss_pred             CeEEEec
Q 014644          406 NLIACAN  412 (421)
Q Consensus       406 ~~la~~~  412 (421)
                      +.|...+
T Consensus       293 ~~iyf~a  299 (353)
T PF00930_consen  293 NRIYFTA  299 (353)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            8776443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.34  E-value=0.026  Score=40.67  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe---cCCCCeEEEEEcCCeEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~s~~~d~~v~  213 (421)
                      .+.|.+|.-... ..++.+ .+|+|-+|+-.  .+.++..        . ...+.++.+.   -+|...|++|=.+|.|-
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiK--------S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIK--------S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeec--------c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            345666666655 457777 99999999865  4555442        1 2235555443   34445788888888764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.32  E-value=0.022  Score=55.17  Aligned_cols=188  Identities=11%  Similarity=0.082  Sum_probs=92.1

Q ss_pred             cceEEEeecCCCCEEEEE-c------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-C
Q 014644          139 FNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G  210 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~  210 (421)
                      ..+.+.+++|+|+.++.. .      |..-.||-...++......       .+  .......|+|+| ..|++.+.. .
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g--~~~t~PsWspDG-~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EG--HSLTRPSWSLDA-DAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cC--CCCCCceECCCC-CceEEEecCcc
Confidence            457888999999988864 2      4444455433223332221       22  237788999998 767666533 2


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEE---EECCCCCcceeEEee
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL---WDIRMDSTPVATFKI  287 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i---~d~~~~~~~~~~~~~  287 (421)
                      .+++.+-......    .....  .......   .....|..+.|||||..++.-..+.|++   -... .+.  ..+..
T Consensus       420 ~~~v~~~~~~gql----~~~~v--d~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~--~~l~~  487 (591)
T PRK13616        420 VVRVIRDPATGQL----ARTPV--DASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ--YALTN  487 (591)
T ss_pred             eEEEeccCCCceE----EEEec--cCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc--eeecc
Confidence            2223222111000    00000  0000000   1145799999999999998765677776   3322 233  22211


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC--CCCccceeeec
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--KNENRKPILQA  357 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~  357 (421)
                      .......+     .+.   +.++.|.+++.++ ++..++.-.+|.+.-.+.....+.+.  ..++..++-.+
T Consensus       488 ~~~l~~~l-----~~~---~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        488 PREVGPGL-----GDT---AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             cEEeeccc-----CCc---cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence            00000000     000   1578999998855 55555555556555433333222332  34444444443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.31  E-value=0.0077  Score=59.29  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=83.2

Q ss_pred             eEEeecccceeeeeeeecCCCCc-ceEEEeecC-----CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          117 KIANVGNSVHARCQKVYPHAHDF-NINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~-----~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                      .--|++.+   +.+..+ ..|.. +|..++-..     +....+.| .+..+..||.+..+..+-...   .........
T Consensus       507 y~mDLe~G---KVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~---~k~Y~~~~~  579 (794)
T PF08553_consen  507 YKMDLERG---KVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ---SKQYSSKNN  579 (794)
T ss_pred             EEEecCCC---cEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc---ccccccCCC
Confidence            33344444   556665 33433 254443321     13345667 899999999986542211110   111223455


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  269 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  269 (421)
                      ..|++-+.+|  +||.|+.+|.||+||-. +...    +            ..+++...+|..|..+.||++|++.+...
T Consensus       580 Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~A----K------------T~lp~lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  580 FSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRA----K------------TALPGLGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             ceEEEecCCc--eEEEEeCCCcEEeeccc-chhh----h------------hcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence            6777777776  89999999999999933 2211    1            11233467999999999999999888878


Q ss_pred             EEEEEC
Q 014644          270 LKLWDI  275 (421)
Q Consensus       270 i~i~d~  275 (421)
                      |.|++.
T Consensus       641 LlLi~t  646 (794)
T PF08553_consen  641 LLLIDT  646 (794)
T ss_pred             EEEEEE
Confidence            888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.29  E-value=0.06  Score=51.41  Aligned_cols=29  Identities=17%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             eEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          308 FECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       308 ~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      ..+.++|||+++++++ .+.++.|.|+.+.
T Consensus       324 HGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             cceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            6899999999987665 4899999999875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.095  Score=44.40  Aligned_cols=105  Identities=12%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             cceEEEeecCCCC-EEEEE-cCCc-EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-----C
Q 014644          139 FNINSISNNSDCE-TFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----G  210 (421)
Q Consensus       139 ~~v~~l~~~~~~~-~l~s~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----~  210 (421)
                      ..-..++++|... -++.+ .-|+ ..++|.+...+.+.....+...+.+|.      .|+||| .+|+..-.|     |
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG-~~LYATEndfd~~rG  140 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDG-RLLYATENDFDPNRG  140 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCC-cEEEeecCCCCCCCc
Confidence            3445678888644 44456 5554 578898844444433322323344453      699999 887766543     7


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      .|-+||.+.+-..   +-.|..             |.-....+.+.+||+.++.+.
T Consensus       141 ViGvYd~r~~fqr---vgE~~t-------------~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         141 VIGVYDAREGFQR---VGEFST-------------HGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             eEEEEecccccce---eccccc-------------CCcCcceeEEecCCcEEEEeC
Confidence            8999999854211   222333             344567899999999998765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.23  E-value=0.078  Score=47.64  Aligned_cols=116  Identities=15%  Similarity=0.075  Sum_probs=67.7

Q ss_pred             CCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          136 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      ...++|++++--  +..|+.+..+.|.+|++...........      ......+.++...  + ++++.|.....+.++
T Consensus        86 ~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~------~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   86 EVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAF------YDSPFYITSLSVF--K-NYILVGDAMKSVSLL  154 (321)
T ss_dssp             EESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEE------E-BSSSEEEEEEE--T-TEEEEEESSSSEEEE
T ss_pred             eecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhhe------ecceEEEEEEecc--c-cEEEEEEcccCEEEE
Confidence            346678888766  3457778778999999984441333221      1112245555444  5 688889888888877


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECC
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR  276 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~  276 (421)
                      ..+.....   ...+..           ......+.++.|-++++.++.++. |.+.++...
T Consensus       155 ~~~~~~~~---l~~va~-----------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNK---LILVAR-----------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE----EEEEEE-----------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCE---EEEEEe-----------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            54431100   011111           001346888888877777777766 999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.21  E-value=0.13  Score=45.03  Aligned_cols=231  Identities=13%  Similarity=0.067  Sum_probs=117.2

Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      .++.|+.| .+| +.+++........+..         +...|..+...|+- +.++.-+ |+.+.++++..-.......
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccc
Confidence            57788888 888 9999984233333332         22349999999987 5555544 5999999998754321100


Q ss_pred             hhhccccccCCCcccccccccceeEEE---EcCCCCEEEEecCCeEEEEECCCC---C-cceeEEeeccCcccccccccC
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLYN  300 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~~~~~~i~i~d~~~~---~-~~~~~~~~~~~~~~~~~~~~~  300 (421)
                       .... .........+. ....+...+   -......|+.+....|.+|.+...   . ...+.+.....+         
T Consensus        74 -~~~~-~~~~~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~---------  141 (275)
T PF00780_consen   74 -PLAF-PKSRSLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP---------  141 (275)
T ss_pred             -cccc-ccccccccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc---------
Confidence             0000 00000000000 012233333   222345666666578999888642   1 344555554433         


Q ss_pred             CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC---------ccceeeecCCcccccccceeee
Q 014644          301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE---------NRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                             ..++|.  +..|+.|..+ ...+.|+.++.. ...+......         ...+....-.     ...+|.+
T Consensus       142 -------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~Ll~  205 (275)
T PF00780_consen  142 -------SSIAFL--GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-----DNEFLLC  205 (275)
T ss_pred             -------EEEEEe--CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-----CceEEEE
Confidence                   588887  5567777654 477789886632 2222111110         1111111100     0124444


Q ss_pred             ecccCcccCCCCCccc-cccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          372 GLYRQAHENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       372 g~~d~~~iw~~~~~~~-~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      -.+-|.-+-..|+... ..+.....+.++++  ..++|.+...+.+-||+.
T Consensus       206 ~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~  254 (275)
T PF00780_consen  206 YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL  254 (275)
T ss_pred             ecceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence            3222211212333222 23344556666666  356888888888888863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.20  E-value=0.16  Score=45.70  Aligned_cols=106  Identities=12%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             cCCCeeEEEEecCCCCeEEEEEc---CC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSS---RG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~---d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      -...+..+.|+|..+.+|+.|-+   +. .-|||-+++.....   +.+..|  .         ....+.-=-|.|||..
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~--~---------~~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRR--M---------EGESVGHEFWVPDGST  251 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS--------------TTEEEEEEEE-TTSS-
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecC--C---------CCcccccccccCCCCE
Confidence            34567788999988677777653   22 13666554422111   111110  0         0234555678999997


Q ss_pred             EEEe-----c-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          262 LLSR-----D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       262 l~~~-----~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                      |.--     . +..|.-+|+.+ ++......... .                ..+--++||++++.=+
T Consensus       252 i~y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p~-~----------------~H~~ss~Dg~L~vGDG  301 (386)
T PF14583_consen  252 IWYDSYTPGGQDFWIAGYDPDT-GERRRLMEMPW-C----------------SHFMSSPDGKLFVGDG  301 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-TTT---EEEEEEE-S-E----------------EEEEE-TTSSEEEEEE
T ss_pred             EEEEeecCCCCceEEEeeCCCC-CCceEEEeCCc-e----------------eeeEEcCCCCEEEecC
Confidence            7641     1 14566777775 43322222211 1                3566678998776433

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.033  Score=51.05  Aligned_cols=140  Identities=11%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC--------EEEEecCCeEEEE
Q 014644          202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--------HLLSRDYMNLKLW  273 (421)
Q Consensus       202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~~~i~i~  273 (421)
                      ++.++.....|+-.|+..|+.+    ..|..|              ..|+-+.+.|+.+        .|+.-++..|.-|
T Consensus       348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri  409 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI  409 (644)
T ss_pred             EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence            3444555567888888888765    556552              3377777777644        2333355889999


Q ss_pred             ECCCCCc-ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccc
Q 014644          274 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK  352 (421)
Q Consensus       274 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  352 (421)
                      |++-.+. .+..-++|+....         .-  ..|++-..+ -+|++||.+|.|++||- .+.+....          
T Consensus       410 DpRv~~~~kl~~~q~kqy~~k---------~n--Fsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTA----------  466 (644)
T KOG2395|consen  410 DPRVQGKNKLAVVQSKQYSTK---------NN--FSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTA----------  466 (644)
T ss_pred             cccccCcceeeeeeccccccc---------cc--cceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhc----------
Confidence            9986444 2222333332210         00  034444444 47999999999999996 33111111          


Q ss_pred             eeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEE
Q 014644          353 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF  418 (421)
Q Consensus       353 ~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i  418 (421)
                                                          +-+...+|..+..+.||++|++.+...|.+
T Consensus       467 ------------------------------------lPgLG~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  467 ------------------------------------LPGLGDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             ------------------------------------ccccCCceeeEEeeccCcEEEEecccEEEE
Confidence                                                113457788888888888888887766554

>smart00320 WD40 WD40 repeats

Probab=97.09  E-value=0.0019  Score=36.39  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          308 FECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       308 ~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      .+++|.+++.++++++.|+.+++|+
T Consensus        16 ~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       16 TSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             eEEEECCCCCEEEEecCCCeEEEcC
Confidence            7899999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.06  E-value=0.26  Score=45.81  Aligned_cols=50  Identities=16%  Similarity=0.094  Sum_probs=34.1

Q ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-CCCccceeeecC
Q 014644          308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA  358 (421)
Q Consensus       308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~  358 (421)
                      ..++.||+|++||.-..+|.+.+...+-. .....+... ......+.|+.+
T Consensus       220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  220 IKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECC
Confidence            68999999999999999999999876544 223333222 334455566544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.05  E-value=0.096  Score=47.07  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=80.5

Q ss_pred             CcEEEEeCCCC---ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccc-ccccchhhhcccc
Q 014644          159 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA  234 (421)
Q Consensus       159 ~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~h~  234 (421)
                      |.|.++++...   ...++.+     .-....++|++++-- ++ . |+. +.++.|.+|++...+ ...  ...+..  
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~~--~~~~~~--  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLLK--KAFYDS--  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEEE--EEEE-B--
T ss_pred             cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccchh--hheecc--
Confidence            88999999842   1122222     013356889988766 33 4 443 346889999998765 221  011111  


Q ss_pred             ccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644          235 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  313 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  313 (421)
                                  ...+.++...  +.+++.|+. ..+.++.++.....+..+.......             .++++.|-
T Consensus       129 ------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l  181 (321)
T PF03178_consen  129 ------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL  181 (321)
T ss_dssp             ------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred             ------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence                        2244555444  669998876 7788876654344344443322221             23678887


Q ss_pred             CCCCEEEEeeCCCeEEEEecCC
Q 014644          314 GDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       314 p~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      +++..++.+..+|.+.++....
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-S
T ss_pred             cCCcEEEEEcCCCeEEEEEECC
Confidence            6667899999999999998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.18  Score=43.11  Aligned_cols=176  Identities=9%  Similarity=0.030  Sum_probs=102.9

Q ss_pred             CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      +-...|.++.|+|+.+.|++- +...-.||= .+.++.++.+.     +.+. .....+.+..++ +++++--.++.+.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~GdlirtiP-----L~g~-~DpE~Ieyig~n-~fvi~dER~~~l~~  154 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRTIP-----LTGF-SDPETIEYIGGN-QFVIVDERDRALYL  154 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEEec-----cccc-CChhHeEEecCC-EEEEEehhcceEEE
Confidence            445569999999999999987 554444443 33688888763     3333 334677888887 77777778899988


Q ss_pred             EECCcccccccchh-hhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc--eeEEeeccC
Q 014644          215 VDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEH  290 (421)
Q Consensus       215 wd~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~~  290 (421)
                      +.+........... .+..        ......+.....++|+|..+.|..+-+ .-+.||.+......  +.....+..
T Consensus       155 ~~vd~~t~~~~~~~~~i~L--------~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         155 FTVDADTTVISAKVQKIPL--------GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             EEEcCCccEEeccceEEec--------cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence            87766532211000 1111        001111456789999998888877755 55666665421111  111111111


Q ss_pred             cccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~  335 (421)
                      ..    .+    ..-++.++.|.+. +.+|+-+.+++.+.-.|...
T Consensus       227 ~~----~~----f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         227 DR----DL----FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cc----ce----EeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            10    00    1124467888874 56666667777777777653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.98  E-value=0.23  Score=43.83  Aligned_cols=265  Identities=12%  Similarity=0.035  Sum_probs=133.6

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----------cCCcEEEEeCCCCceeeeeeecCCC-C
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPS-N  182 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----------~d~~i~lwd~~~~~~~~~~~~~~~~-~  182 (421)
                      .+.+.|.++.   +.+..+..+..   -.+..+|+++.+.++           ..-.|.+||.. +-....-+.+.+. .
T Consensus        18 rv~viD~d~~---k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R   90 (342)
T PF06433_consen   18 RVYVIDADSG---KLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPR   90 (342)
T ss_dssp             EEEEEETTTT---EEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B
T ss_pred             eEEEEECCCC---cEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcch
Confidence            3555665554   44444422332   335678999988862           23469999998 4443333333221 1


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      +. .......+.++.++ ++++...  --.+|.+-|+..++..    ..+..               ..+..+--+++..
T Consensus        91 ~~-~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv----~ei~~---------------PGC~~iyP~~~~~  149 (342)
T PF06433_consen   91 AQ-VVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVV----GEIDT---------------PGCWLIYPSGNRG  149 (342)
T ss_dssp             ---BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEE----EEEEG---------------TSEEEEEEEETTE
T ss_pred             he-ecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCcee----eeecC---------------CCEEEEEecCCCc
Confidence            11 11233456788888 7776654  3457889999887644    33332               1222232233444


Q ss_pred             EEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-
Q 014644          261 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-  339 (421)
Q Consensus       261 ~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-  339 (421)
                      +...|.||.+.-..+...++...+...-        ...++|.+|  ..-++...+..++--+.+|.|+--|+...... 
T Consensus       150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~--------F~~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~  219 (342)
T PF06433_consen  150 FSMLCGDGSLLTVTLDADGKEAQKSTKV--------FDPDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF  219 (342)
T ss_dssp             EEEEETTSCEEEEEETSTSSEEEEEEEE--------SSTTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred             eEEEecCCceEEEEECCCCCEeEeeccc--------cCCCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccc
Confidence            6666777999988888667765332110        011233343  34556656556666889999999888765311 


Q ss_pred             eeEEecCC----------CCccceeeecCCcccccccceeeee-----cccCc-ccC--C-CCCccccccccccCeEEEE
Q 014644          340 GITVEAGK----------NENRKPILQAAPRARRSSLSNLTRG-----LYRQA-HEN--S-SSGHHELSYNLSSKLLHLA  400 (421)
Q Consensus       340 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g-----~~d~~-~iw--~-~~~~~~~~~~~~~~v~~~~  400 (421)
                      ...+..-.          +....+++.+.. ++   +-.|.-.     .+++. .||  + ........+.....+.+++
T Consensus       220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~r---lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~  295 (342)
T PF06433_consen  220 GKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GR---LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIA  295 (342)
T ss_dssp             EEEEESS-HHHHHTTEEE-SSS-EEEETTT-TE---EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEE
T ss_pred             cCcccccCccccccCcCCcceeeeeecccc-Ce---EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEE
Confidence            11111111          112233443321 11   1111111     23334 677  1 1122222233455677899


Q ss_pred             EccCCC-eEEEec--CCceEEEeC
Q 014644          401 WHPTTN-LIACAN--GNSLFFHYA  421 (421)
Q Consensus       401 ~spd~~-~la~~~--~~~~~i~~~  421 (421)
                      .+-|.+ +|.+.+  ++.|++|++
T Consensus       296 Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  296 VSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEET
T ss_pred             EccCCCcEEEEEcCCCCeEEEEeC
Confidence            998865 554443  566999975

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.98  E-value=0.31  Score=45.29  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             ccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644          247 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      .+++..+++||+|+++|.-.+ |.+.+....- .+....+...
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~  257 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD  257 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence            358999999999999998766 8998888764 5555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.0022  Score=61.61  Aligned_cols=108  Identities=14%  Similarity=0.059  Sum_probs=78.1

Q ss_pred             EEEEecCCCCeEEEEE----cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          192 SAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      -..|+|.. .+++.++    ..|+|.||- .+|++.    +....              .-.+++++|+|..-.|+.|-.
T Consensus        20 i~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPq----r~Vt~--------------P~hatSLCWHpe~~vLa~gwe   79 (1416)
T KOG3617|consen   20 ISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQ----RDVTY--------------PVHATSLCWHPEEFVLAQGWE   79 (1416)
T ss_pred             ccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCC----ccccc--------------ceehhhhccChHHHHHhhccc
Confidence            34799998 7777776    458888884 344322    11111              224677999998878888866


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                       |.+.+|.... .+.......|...+               ..+.|||+|..|+++..-|.+.+|....
T Consensus        80 ~g~~~v~~~~~-~e~htv~~th~a~i---------------~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   80 MGVSDVQKTNT-TETHTVVETHPAPI---------------QGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             cceeEEEecCC-ceeeeeccCCCCCc---------------eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence             9999999875 44444444555544               6899999999999999999999998773

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.89  E-value=0.2  Score=41.84  Aligned_cols=107  Identities=19%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  273 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~  273 (421)
                      ..++...+++.|+..+.+.--|..+|...-+  .++.                ..+.+-++- -|.+++.|.. |.+++.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We--~ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl   78 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE--AILG----------------VRIECSAIV-VGDFVVLGCYSGGLYFL   78 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEee--hhhC----------------ceeeeeeEE-ECCEEEEEEccCcEEEE
Confidence            3455447888899999999999998874421  1111                223332222 4778888877 999999


Q ss_pred             ECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          274 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       274 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +.++ +.....+...+...               .+....+++..|..|+.|++.+..|..+.
T Consensus        79 ~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   79 CVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             Eecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEeccccc
Confidence            9987 87777776554332               35667789999999999999999998875

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.88  E-value=0.32  Score=43.85  Aligned_cols=57  Identities=19%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             ceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644          140 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  198 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  198 (421)
                      ..++|+|.|||+++++-..|.|++++.. +.....+.... ............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence            4578999999988776699999999943 22211121111 122334567899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.86  E-value=0.0046  Score=37.04  Aligned_cols=40  Identities=18%  Similarity=0.510  Sum_probs=32.1

Q ss_pred             ccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR   65 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~   65 (421)
                      |..+........|.+++|  +|..+++|.+..||.|.++++.
T Consensus         2 f~~~~~k~l~~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    2 FRQLGEKNLPSRVSCMSW--CPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cceecccCCCCcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence            334444445678999999  5888999999999999999984

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.75  E-value=0.12  Score=37.38  Aligned_cols=100  Identities=11%  Similarity=0.061  Sum_probs=61.5

Q ss_pred             eeEEEE---ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          190 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       190 v~~~~~---~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      |.++++   .-+|.+.|+.|+.|..||+|+=..-  .    ..+..              .+.|..+.-...+ .++.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~----~Ei~e--------------~~~v~~L~~~~~~-~F~Y~l   60 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--V----AEITE--------------TDKVTSLCSLGGG-RFAYAL   60 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--E----EEEec--------------ccceEEEEEcCCC-EEEEEe
Confidence            455554   4455588999999999999985431  1    22233              4678888877765 455554


Q ss_pred             -CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---CC-CEEEEeeCCCeEE
Q 014644          267 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR  329 (421)
Q Consensus       267 -~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~-~~l~~~s~dg~i~  329 (421)
                       .|+|-+|+-.   +.+.+.+.....                .++++..   || .-|++|-.+|.|-
T Consensus        61 ~NGTVGvY~~~---~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   61 ANGTVGVYDRS---QRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCCEEEEEeCc---ceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence             4999999853   333334333332                3443332   33 3588888888874

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.64  E-value=0.44  Score=42.13  Aligned_cols=261  Identities=12%  Similarity=0.074  Sum_probs=128.7

Q ss_pred             cCCCCeEEEEe----------CCCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           44 APNGSMFILST----------NDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        44 ~~~~~~l~t~s----------~d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      +|+++.+.+++          ..-.|.+||..+-... .+.. ........    .+....  ...+.+++++.--.+..
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i-P~k~R~~~----~~~~~~--~~ls~dgk~~~V~N~TP  116 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI-PPKPRAQV----VPYKNM--FALSADGKFLYVQNFTP  116 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE-TTS-B--B----S--GGG--EEE-TTSSEEEEEEESS
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec-CCcchhee----cccccc--eEEccCCcEEEEEccCC
Confidence            68888777653          3447999999886522 2221 11100000    001111  22333444444444444


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe-e
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~  191 (421)
                      ...+.+.|++..   +.++.+  .-.+ +..+--+++..+...|.||++.-..+...++..... .+  .+..-.+++ .
T Consensus       117 a~SVtVVDl~~~---kvv~ei--~~PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~--~F~~~~dp~f~  187 (342)
T PF06433_consen  117 ATSVTVVDLAAK---KVVGEI--DTPG-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS-TK--VFDPDDDPLFE  187 (342)
T ss_dssp             SEEEEEEETTTT---EEEEEE--EGTS-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE-EE--ESSTTTS-B-S
T ss_pred             CCeEEEEECCCC---ceeeee--cCCC-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEee-cc--ccCCCCccccc
Confidence            445667777665   444444  1111 111111223334444588888888887555543221 01  112222222 2


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE----e--
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----R--  265 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~--  265 (421)
                      .-++...+ ..++..+..|.|+--|+.......  ...+.. .......  -.--.+.-.-+++++....|..    +  
T Consensus       188 ~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~-~t~~e~~--~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~  261 (342)
T PF06433_consen  188 HPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSL-LTDAEKA--DGWRPGGWQLIAYHAASGRLYVLMHQGGE  261 (342)
T ss_dssp             --EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEES-S-HHHHH--TTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred             ccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccc-cCccccc--cCcCCcceeeeeeccccCeEEEEecCCCC
Confidence            34455555 567778899999888887654211  111111 0000000  0001233445777765544432    1  


Q ss_pred             -c--C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEEEEecCCCCC
Q 014644          266 -D--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSA  338 (421)
Q Consensus       266 -~--~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~iwd~~~~~~  338 (421)
                       +  +  ..|.++|+.+ ++.+.++......                .+++.+.+.+ +|++.+ .++.+.+||..++ .
T Consensus       262 gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k  323 (342)
T PF06433_consen  262 GSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVYDAATG-K  323 (342)
T ss_dssp             T-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEEETTT---
T ss_pred             CCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-c
Confidence             1  2  3688889987 8888888764432                5888888765 555544 5799999999998 4


Q ss_pred             ceeEEe
Q 014644          339 GGITVE  344 (421)
Q Consensus       339 ~~~~~~  344 (421)
                      ....+.
T Consensus       324 ~~~~~~  329 (342)
T PF06433_consen  324 LVRSIE  329 (342)
T ss_dssp             EEEEE-
T ss_pred             EEeehh
Confidence            444433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.56  Score=43.21  Aligned_cols=151  Identities=10%  Similarity=0.093  Sum_probs=98.5

Q ss_pred             eEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---CCeEEEE
Q 014644          141 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLV  215 (421)
Q Consensus       141 v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---d~~v~iw  215 (421)
                      -..++.++.+..+.. . .+..|.+.|.. .........      .+  .....++++|++ +.++.+..   ++++.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~------vG--~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvi  145 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIP------VG--LGPVGLAVDPDG-KYVYVANAGNGNNTVSVI  145 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEee------ec--cCCceEEECCCC-CEEEEEecccCCceEEEE
Confidence            456778888885555 4 67999999977 333333321      11  256789999999 66666554   6888888


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCccee-----EEeec
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA-----TFKIH  288 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~-----~~~~~  288 (421)
                      |..+.....   ....+              ..+ ..++++|+|..+.... . +.|.+.|... .....     .....
T Consensus       146 d~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~  206 (381)
T COG3391         146 DAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG  206 (381)
T ss_pred             eCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC
Confidence            888766441   11111              123 8999999999877664 3 9999999764 33221     11112


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---CeEEEEecCCC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG  336 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---g~i~iwd~~~~  336 (421)
                      ..+                ..+.++|+|..+......   +.+...|..++
T Consensus       207 ~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         207 TGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             CCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence            222                478999999977665543   58888887766

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.52  E-value=0.12  Score=48.35  Aligned_cols=116  Identities=11%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             cceeEEEEcCC----C-CEEEEecCCeEEEEECCCC----CcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          248 ASISDIKFAND----G-QHLLSRDYMNLKLWDIRMD----STPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       248 ~~v~~~~~s~~----~-~~l~~~~~~~i~i~d~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                      ..|.++.|.|-    - .+||.-....|.+|.+...    ++.+..... .....+.+.           .++.|+|...
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLp-----------QGCVWHPk~~  125 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLP-----------QGCVWHPKKA  125 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCC-----------CcccccCCCc
Confidence            45899999984    2 3555555588999998631    222221111 111222222           5789999988


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeE
Q 014644          318 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL  397 (421)
Q Consensus       318 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~  397 (421)
                      .|+.-.....-.+++++.....++                                              .-+...+.|.
T Consensus       126 iL~VLT~~dvSV~~sV~~d~srVk----------------------------------------------aDi~~~G~Ih  159 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCDSSRVK----------------------------------------------ADIKTSGLIH  159 (671)
T ss_pred             eEEEEecCceeEeeeeeeCCceEE----------------------------------------------EeccCCceEE
Confidence            877665544444556554411111                                              1112246788


Q ss_pred             EEEEccCCCeEEEecCCc--eEEEe
Q 014644          398 HLAWHPTTNLIACANGNS--LFFHY  420 (421)
Q Consensus       398 ~~~~spd~~~la~~~~~~--~~i~~  420 (421)
                      +.+|.+||+.|+++-...  -|||+
T Consensus       160 CACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  160 CACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEecCcCCEEEEEeCCeEEEEEec
Confidence            999999999988776554  57775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.55  Score=41.54  Aligned_cols=148  Identities=11%  Similarity=0.076  Sum_probs=89.1

Q ss_pred             cceEEEeecCCCCEEEEE-c---------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-
Q 014644          139 FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-  207 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-  207 (421)
                      ...+.+...|+|.+.++. .         ...=.||-+...+...+.+       ..+-..-.+++||||+ +.++.+. 
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-------~~~~~~~NGla~SpDg-~tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-------DDDLTIPNGLAFSPDG-KTLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-------cCcEEecCceEECCCC-CEEEEEeC
Confidence            456788889999888875 4         1112345444223344333       3334456789999999 6666665 


Q ss_pred             cCCeEEEEECCc--ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCccee
Q 014644          208 SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       208 ~d~~v~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~  283 (421)
                      ..+.|.-|++..  +.....  .          ....+....+..-.++...+|.+-+++..  +.|.+|+..  ++.+.
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~--~----------~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~~  248 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGR--R----------GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLLG  248 (307)
T ss_pred             CCCeEEEEecCcccCccCCc--c----------eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEEE
Confidence            447888887763  111100  0          00111223567778889999988865543  489999985  88888


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEc-CCCCEEEEee
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGS  323 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s  323 (421)
                      .+..+....               .+++|- |+.+.|+..+
T Consensus       249 ~i~lP~~~~---------------t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         249 EIKLPVKRP---------------TNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEECCCCCC---------------ccceEeCCCcCEEEEEe
Confidence            887774333               567775 3445554443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.73  Score=42.50  Aligned_cols=157  Identities=11%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             ceEEEeecCCCCEEEEE-c---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcCCeEEE
Q 014644          140 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRL  214 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~i  214 (421)
                      ....++++|+++.+..+ .   ++++.+.|..+ .......       .....+ ..++++|+| ..+ ++-..++.|.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~-------~vG~~P-~~~a~~p~g-~~vyv~~~~~~~v~v  186 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATI-------PVGNTP-TGVAVDPDG-NKVYVTNSDDNTVSV  186 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEE-------ecCCCc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence            55688999999888876 4   57788888773 3333323       111133 889999999 644 44457899999


Q ss_pred             EECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----CeEEEEECCCCCcceeE-Eeec
Q 014644          215 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH  288 (421)
Q Consensus       215 wd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~i~i~d~~~~~~~~~~-~~~~  288 (421)
                      .|........ ........              ......+.++|+|.++....+    +.+...|..+ +..... ....
T Consensus       187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~  251 (381)
T COG3391         187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG  251 (381)
T ss_pred             EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence            9977654321 00001111              234578999999997776533    4788888875 444433 2222


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  336 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~  336 (421)
                      ....               ..+..+|+|+.+.+... .+.+.+-|..+.
T Consensus       252 ~~~~---------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         252 SGAP---------------RGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             cCCC---------------CceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            2111               47899999999888744 588998888765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.062  Score=49.38  Aligned_cols=131  Identities=15%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             EeecccceeeeeeeecCCCCcceEEEeecCCCC--E-----EEEE-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCC
Q 014644          119 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--T-----FVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~-----l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~  189 (421)
                      .|++.+   +.+..+ .-|.. |.-+.+.|+.+  .     -+.| .|..|.-||++..+. .+...+.+   -......
T Consensus       361 lDIE~G---KIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k---qy~~k~n  432 (644)
T KOG2395|consen  361 LDIERG---KIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK---QYSTKNN  432 (644)
T ss_pred             eecccc---eeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc---ccccccc
Confidence            344444   555555 33433 66666777532  2     2346 899999999984443 22211111   1112234


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  269 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  269 (421)
                      -.|.+-..+|  +|+.||.+|-||+||- .+....   ..             +++...+|..+..+.||++|++.++..
T Consensus       433 Fsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA-------------lPgLG~~I~hVdvtadGKwil~Tc~ty  493 (644)
T KOG2395|consen  433 FSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA-------------LPGLGDAIKHVDVTADGKWILATCKTY  493 (644)
T ss_pred             cceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc-------------ccccCCceeeEEeeccCcEEEEecccE
Confidence            4565555554  8999999999999996 332111   11             233467899999999999999888777


Q ss_pred             EEEEECC
Q 014644          270 LKLWDIR  276 (421)
Q Consensus       270 i~i~d~~  276 (421)
                      +.+.++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            7777764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=0.57  Score=39.91  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             eeEEEEecCCCCeEEEEEcCCe-EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c-
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-  266 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-  266 (421)
                      -..++|+|..+.-++.+-.-|+ ..++|....+........-..|         |.+|      =.|||||++|.+. . 
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---------fyGH------Gvfs~dG~~LYATEnd  134 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---------FYGH------GVFSPDGRLLYATEND  134 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce---------eecc------cccCCCCcEEEeecCC
Confidence            3457888887677777776665 4678888765432111111111         2222      3599999999864 1 


Q ss_pred             ---C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          267 ---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       267 ---~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                         . |.|-|||.+..-+.+-.+..|.-..               ..+.+.+||+.|+.+.
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan  180 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence               2 8899999975334445555544332               5789999999987664

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.27  E-value=1.1  Score=43.77  Aligned_cols=126  Identities=10%  Similarity=0.091  Sum_probs=64.4

Q ss_pred             eEEEeecCCCCEEEEE-cC-CcEEEEeCCCCceeeeeeecCCCCCC-ccCCCeeEEEEecCCCCeEEEEEcCCeEEE---
Q 014644          141 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---  214 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i---  214 (421)
                      ...-.|+|||+.|.+. +. ..+++.+-....+.. .+.+...... .....|..+.|+||| ..++... ++.|.+   
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~-~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA-RTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEE-EEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence            7788999998888776 32 233444333222222 1111111111 234579999999999 7776655 567766   


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP  281 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~  281 (421)
                      -....+..     .+-..       +.........+..+.|..++.+++....+.-.+|.+.-++..
T Consensus       476 vr~~~G~~-----~l~~~-------~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        476 EQTEDGQY-----ALTNP-------REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             EeCCCCce-----eeccc-------EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence            33233321     11000       000011123467899999998665443333344544433433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.24  E-value=1.1  Score=42.33  Aligned_cols=145  Identities=12%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             ccccCCCccccccccccccEEEEEEEEcCC--CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccccccccee
Q 014644           17 FQSHEPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM   94 (421)
Q Consensus        17 ~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~--~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   94 (421)
                      +++.+++|-.-+-+|.-+.|..+.|.|--.  ...|++.--.+.|.||.+.-......+.                    
T Consensus        40 l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~--------------------   99 (671)
T PF15390_consen   40 LHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL--------------------   99 (671)
T ss_pred             eeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc--------------------
Confidence            356678888888888889999999954321  3356666777899999976322110000                    


Q ss_pred             eccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCcee
Q 014644           95 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC  172 (421)
Q Consensus        95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~  172 (421)
                                +.+           .-.+..   +..-.+       -..+.|+|....|+.-  .|-. .++++......
T Consensus       100 ----------l~s-----------QtcEi~---e~~pvL-------pQGCVWHPk~~iL~VLT~~dvS-V~~sV~~d~sr  147 (671)
T PF15390_consen  100 ----------LMS-----------QTCEIR---EPFPVL-------PQGCVWHPKKAILTVLTARDVS-VLPSVHCDSSR  147 (671)
T ss_pred             ----------eee-----------eeeecc---CCcccC-------CCcccccCCCceEEEEecCcee-EeeeeeeCCce
Confidence                      000           000000   111111       2356789988887764  4433 35566533333


Q ss_pred             eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          173 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       173 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      ++.      .+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus       148 Vka------Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  148 VKA------DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEE------ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            332      11 245779999999999444444444445678886543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.17  E-value=0.37  Score=41.51  Aligned_cols=155  Identities=12%  Similarity=0.047  Sum_probs=85.9

Q ss_pred             ceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE-
Q 014644          140 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD-  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd-  216 (421)
                      .+.+.+++++++.++.-  .++.-.||-....+......       .  ...+....|++++ ...+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-------~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-------T--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-------c--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence            68899999999988763  35555555554333332221       1  2367788999998 7776666666666664 


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec----CCeEEEEECCCCCcc-eeEEeeccCc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP-VATFKIHEHL  291 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~i~d~~~~~~~-~~~~~~~~~~  291 (421)
                      ...+............              ...|..+.+||||..++.-.    .+.|.+--+.....- -..+......
T Consensus        95 ~~~g~~~~~~v~~~~~--------------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~  160 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGL--------------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV  160 (253)
T ss_pred             cCCCcceeEEeccccc--------------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence            3333221111111111              12799999999999887532    377777665421111 1111110000


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  326 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg  326 (421)
                      .        ......+.+++|.+++.+++.+...+
T Consensus       161 ~--------~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  161 A--------PPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             c--------ccccCcceeeeecCCCEEEEEeCCCC
Confidence            0        00001236899999998877665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.16  E-value=0.73  Score=39.54  Aligned_cols=188  Identities=12%  Similarity=0.147  Sum_probs=106.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+.+..|.++.|  +|+.+.|++......-.||=-.+|. +..+..                                  
T Consensus        82 ~g~~~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL----------------------------------  125 (316)
T COG3204          82 LGETANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------------------------------  125 (316)
T ss_pred             ccccccccceee--CCCcceEEEecCCCceEEEEecCCceEEEecc----------------------------------
Confidence            344566899999  7888888888777776676555554 222211                                  


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeee--cCCCCCCc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDD  185 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~--~~~~~~~~  185 (421)
                                                .+ -.....+.+..++++.++- .++.+.++.+...........  ++......
T Consensus       126 --------------------------~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k  178 (316)
T COG3204         126 --------------------------TG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK  178 (316)
T ss_pred             --------------------------cc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCC
Confidence                                      11 1123456667677777777 888888888774433222111  11111122


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEE
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS  264 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~  264 (421)
                      .......++|.|.. +.|..+-+..-+.||.+....      ..+..|. .........-.-..+.++.|.+... +++-
T Consensus       179 ~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL  250 (316)
T COG3204         179 KNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVL  250 (316)
T ss_pred             CCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------ccccccc-ccCcccccceEeeccccceecCCCCcEEEE
Confidence            24567899999998 788888777777777766432      1122110 0000000000124578889997544 4444


Q ss_pred             ecC-CeEEEEECCCCCcceeEEeeccC
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      +.+ +.+.-.|..  +.++..+..+.+
T Consensus       251 S~ESr~l~Evd~~--G~~~~~lsL~~g  275 (316)
T COG3204         251 SDESRRLLEVDLS--GEVIELLSLTKG  275 (316)
T ss_pred             ecCCceEEEEecC--CCeeeeEEeccC
Confidence            544 777777764  666666554443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.02  E-value=0.029  Score=33.60  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      ....|.+++|+|.. .+||.++.+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence            34679999999998 999999999999999983

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.96  E-value=1.4  Score=41.15  Aligned_cols=225  Identities=8%  Similarity=0.001  Sum_probs=108.4

Q ss_pred             ceEEEeecCCCCEEEEE--cCC----cEEEEeCCCCceeee-eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC--
Q 014644          140 NINSISNNSDCETFVSA--DDL----RINLWNLEISDQCFN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--  210 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~--~d~----~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~--  210 (421)
                      .+....++|+|+++|.+  ..|    .|++.|+++ ++.+. .+       .  ...-.++.|.+++ +.|+....+.  
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i-------~--~~~~~~~~W~~d~-~~~~y~~~~~~~  193 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGI-------E--NPKFSSVSWSDDG-KGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEE-------E--EEESEEEEECTTS-SEEEEEECSTTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcc-------c--ccccceEEEeCCC-CEEEEEEeCccc
Confidence            44567899999999975  333    599999984 44332 21       1  1112249999998 6665554332  


Q ss_pred             ---------eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe--c--C-CeEEEEECC
Q 014644          211 ---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D--Y-MNLKLWDIR  276 (421)
Q Consensus       211 ---------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~-~~i~i~d~~  276 (421)
                               .|+.|.+.+....+  ..+++..           ........+..++|+++|+..  +  . ..+++.|+.
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~-----------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSED--ELVFEEP-----------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG---EEEEC-T-----------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             ccccCCCCcEEEEEECCCChHhC--eeEEeec-----------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence                     36777776643221  1233320           001125678899999998753  2  2 458888887


Q ss_pred             CC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee---CCCeEEEEecCCCCC--ceeEEecCCC
Q 014644          277 MD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSA--GGITVEAGKN  348 (421)
Q Consensus       277 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s---~dg~i~iwd~~~~~~--~~~~~~~~~~  348 (421)
                      ..   ......+.......           .   ..+... ++.+++...   ..+.|.-.++.....  ....+..+..
T Consensus       261 ~~~~~~~~~~~l~~~~~~~-----------~---~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~  325 (414)
T PF02897_consen  261 DGGSPDAKPKLLSPREDGV-----------E---YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE  325 (414)
T ss_dssp             CTTTSS-SEEEEEESSSS------------E---EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred             ccCCCcCCcEEEeCCCCce-----------E---EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC
Confidence            52   12333333322221           0   122222 443433332   246677778776642  1335555555


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccC--CCC-Cc-ccc-ccccccCeEEEEEccCCCeEE
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS-GH-HEL-SYNLSSKLLHLAWHPTTNLIA  409 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~-~~-~~~-~~~~~~~v~~~~~spd~~~la  409 (421)
                      .+....+...  +    ..+++....++. +|.  +.. +. ... ...-.+.|..+...++++.+.
T Consensus       326 ~~~l~~~~~~--~----~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~  386 (414)
T PF02897_consen  326 DVSLEDVSLF--K----DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR  386 (414)
T ss_dssp             SEEEEEEEEE--T----TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred             ceeEEEEEEE--C----CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence            3322333322  1    114455555555 554  333 21 111 112233455666566665544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.92  E-value=1.3  Score=40.47  Aligned_cols=176  Identities=11%  Similarity=0.003  Sum_probs=74.4

Q ss_pred             EEeecCCCCEEEEE-c--C----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--------
Q 014644          143 SISNNSDCETFVSA-D--D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--------  207 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~--d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--------  207 (421)
                      .+..-|+|+.++++ .  +    |-+.+.|-+ +.+.....+.    -.+...--+.+-|.|.. +.++|..        
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-tf~v~g~We~----~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~  207 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE-TFEVKGRWEK----DRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFE  207 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TT-T--EEEE--S----B-TT------EEEETTT-TEEEE-B---HHHHT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCc-cccccceecc----CCCCCCCCCCeEEcCCC-CEEEEeccCChhhcc
Confidence            34445688888884 2  2    346666665 2333322210    01122334667788876 7777754        


Q ss_pred             ------------cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEec--CCeEE
Q 014644          208 ------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD--YMNLK  271 (421)
Q Consensus       208 ------------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~--~~~i~  271 (421)
                                  ...++.+||+.+.+..    +.++.           .........+.|..+  ..+=+++.  ..+|.
T Consensus       208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~----Q~idL-----------g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~  272 (461)
T PF05694_consen  208 KGFNPEDLEAGKYGHSLHVWDWSTRKLL----QTIDL-----------GEEGQMPLEVRFLHDPDANYGFVGCALSSSIW  272 (461)
T ss_dssp             T---TTTHHHH-S--EEEEEETTTTEEE----EEEES------------TTEEEEEEEEE-SSTT--EEEEEEE--EEEE
T ss_pred             cCCChhHhhcccccCeEEEEECCCCcEe----eEEec-----------CCCCCceEEEEecCCCCccceEEEEeccceEE
Confidence                        2458999999987654    44443           000124556777644  44444432  24555


Q ss_pred             EEECCCCCcce--eEEeeccC-----ccccc-ccccC-CCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCcee
Q 014644          272 LWDIRMDSTPV--ATFKIHEH-----LRPKL-CDLYN-NDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       272 i~d~~~~~~~~--~~~~~~~~-----~~~~~-~~~~~-~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~  341 (421)
                      .|--...++..  +.+.....     ..+.+ ..... ...   ++.+..|.|.++|.... .+|.|+.||+........
T Consensus       273 ~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L---itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  273 RFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL---ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             EEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             EEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc---eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence            54432223211  11111110     00000 00000 001   27899999999998766 489999999987644433


Q ss_pred             E
Q 014644          342 T  342 (421)
Q Consensus       342 ~  342 (421)
                      +
T Consensus       350 ~  350 (461)
T PF05694_consen  350 V  350 (461)
T ss_dssp             E
T ss_pred             E
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.85  E-value=1.5  Score=40.46  Aligned_cols=33  Identities=3%  Similarity=0.147  Sum_probs=27.7

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK   68 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~   68 (421)
                      .++|++++.   .+=.++|.|..+|.+.|-|++...
T Consensus        86 ~g~vtal~~---S~iGFvaigy~~G~l~viD~RGPa  118 (395)
T PF08596_consen   86 QGPVTALKN---SDIGFVAIGYESGSLVVIDLRGPA  118 (395)
T ss_dssp             S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTE
T ss_pred             CCcEeEEec---CCCcEEEEEecCCcEEEEECCCCe
Confidence            689999998   466799999999999999997765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.039  Score=54.95  Aligned_cols=99  Identities=9%  Similarity=-0.035  Sum_probs=69.1

Q ss_pred             CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          258 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       258 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .+..++.|++ |.+-..|+...-.+...-..-..               .|.+++|+.+|+.++.|-.+|.|.+||+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~---------------~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQG---------------PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCC---------------cceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            4667888877 89999998631111111111111               2379999999999999999999999999987


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  376 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~  376 (421)
                       ...+.+..|..+...+.+..-. ++   ...+.++...|
T Consensus       163 -k~l~~i~e~~ap~t~vi~v~~t-~~---nS~llt~D~~G  197 (1206)
T KOG2079|consen  163 -KILKVITEHGAPVTGVIFVGRT-SQ---NSKLLTSDTGG  197 (1206)
T ss_pred             -cceeeeeecCCccceEEEEEEe-CC---CcEEEEccCCC
Confidence             7788888888888888776432 22   33566665555

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.76  E-value=0.065  Score=53.46  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      ..++.|+..|.+...|+...- . ..  ....            .-.++|++++|+.+|..++.|-. |.|.+||+.+ +
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL-~-~~--~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL-G-PL--HQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc-c-hh--hcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence            568888888999888877631 1 00  1111            11578999999999999999954 9999999986 8


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  327 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~  327 (421)
                      .+++.+..+..+...            +.-+.+..++..++++...|.
T Consensus       163 k~l~~i~e~~ap~t~------------vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  163 KILKVITEHGAPVTG------------VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cceeeeeecCCccce------------EEEEEEeCCCcEEEEccCCCc
Confidence            888888777665421            134555556667777777776

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.68  E-value=1.4  Score=38.86  Aligned_cols=158  Identities=13%  Similarity=0.087  Sum_probs=77.5

Q ss_pred             CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      .-.+.+..+..++||++++++ ......-||.-  ........      ......|.++.|.|++ .+.+ ....|.|++
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~------r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~  211 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHN------RNSSRRIQSMGFSPDG-NLWM-LARGGQIQF  211 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE--------SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEc------cCccceehhceecCCC-CEEE-EeCCcEEEE
Confidence            445678888899999999999 44455677754  22222211      2345789999999997 6555 448898888


Q ss_pred             EEC-CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccc
Q 014644          215 VDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       215 wd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      =+. ....       .+..+ ..+.     ..-.-.+..++|.++++..++|..|.+. ..... ++.-++.+.-.....
T Consensus       212 s~~~~~~~-------~w~~~-~~~~-----~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~Dg-GktW~~~~~~~~~~~  276 (302)
T PF14870_consen  212 SDDPDDGE-------TWSEP-IIPI-----KTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDG-GKTWQKDRVGENVPS  276 (302)
T ss_dssp             EE-TTEEE-------EE----B-TT-----SS--S-EEEEEESSSS-EEEEESTT-EE-EESST-TSS-EE-GGGTTSSS
T ss_pred             ccCCCCcc-------ccccc-cCCc-----ccCceeeEEEEecCCCCEEEEeCCccEE-EeCCC-CccceECccccCCCC
Confidence            772 2221       11110 0000     0012347899999999888888766443 33332 544333332221111


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                      .            .+.+.|.++.+-++ -+.+|.|--|
T Consensus       277 n------------~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  277 N------------LYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             ---------------EEEEEETTEEEE-E-STTEEEEE
T ss_pred             c------------eEEEEEcCCCceEE-ECCCcEEEEe
Confidence            1            15788876655454 4456776544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.40  E-value=2.4  Score=39.72  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=38.1

Q ss_pred             CcceEEEeecCCCCEEEEEc-CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644          138 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  198 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  198 (421)
                      -...+.|+|.|||++|++-. .|.|++++.. .........+..............|+++|+
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCC
Confidence            34578999999998888874 7999999865 222111111111000113567899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.35  E-value=1.9  Score=38.25  Aligned_cols=152  Identities=14%  Similarity=0.044  Sum_probs=79.3

Q ss_pred             EEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          143 SISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       143 ~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      ...|.++...|+-+  ..+.|.-|+..+...  +.+        .+...+.++..-..+ ..|+++ .. -+.+++...+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~--------~~p~~~~~~~~~d~~-g~Lv~~-~~-g~~~~~~~~~   95 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVF--------PSPGGFSSGALIDAG-GRLIAC-EH-GVRLLDPDTG   95 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEE--------ECCCCcccceeecCC-CeEEEE-cc-ccEEEeccCC
Confidence            34577777755544  788899998873322  222        122333444333333 344443 23 3566776554


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-c---------CCeEEEEECCCCCcceeEEeeccC
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---------~~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ............            ......+.+...|+|.+-++. .         ...-.+|-+...+..++.+..+-.
T Consensus        96 ~~~t~~~~~~~~------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~  163 (307)
T COG3386          96 GKITLLAEPEDG------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT  163 (307)
T ss_pred             ceeEEeccccCC------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence            321100011111            012456788889999877753 2         111134443322444444333211


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  334 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~  334 (421)
                      ..               ++++||||++.|+.... .+.|+-|++.
T Consensus       164 ~~---------------NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         164 IP---------------NGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ec---------------CceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            11               68999999988877654 5788888776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.28  E-value=0.87  Score=44.16  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=67.7

Q ss_pred             EeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe--cCCCCeEEEEEcCCeEEEEECCcc
Q 014644          144 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       144 l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      +.-+.-++..+.. ...++.|||.+...-..+.      .+ ...+.|..+.|.  |++ +.+++.+....|.+|--...
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccch
Confidence            3334444444444 6678999999833322221      22 346789999885  677 88888889999998854221


Q ss_pred             c-----ccccchhhhccccccCCCccccccc-ccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644          221 A-----LCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSRDYMNLKLWDIR  276 (421)
Q Consensus       221 ~-----~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~  276 (421)
                      .     .....++.++           +..+ ..+|.+..|.++|.++++++ +++.|+|-.
T Consensus       107 dy~~~~p~w~~i~~i~-----------i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk~  156 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKID-----------ISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDKW  156 (631)
T ss_pred             hhhcCCcccceeEEEE-----------eecCCCCCccceeEecCCeEEEEeC-CEEEEECCC
Confidence            1     1000111111           1112 25789999999996665544 689999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.22  E-value=0.076  Score=43.44  Aligned_cols=105  Identities=14%  Similarity=0.039  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE-EEEcCCCCEEEEecC-CeEEEEECCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRDY-MNLKLWDIRMD  278 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-~~i~i~d~~~~  278 (421)
                      ..+++|+.+|.|.+|........   ...+..             ....+.+ +.--.++.+..++.. +.|+.|+... 
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~---~d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-  133 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAH---SDRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-  133 (238)
T ss_pred             ceEEeecccceEEEecCCccchH---HHhhhc-------------ccccceeccccccccceeEEeccCCceeeecccc-
Confidence            67899999999999987632211   111111             0122222 222223445556644 9999999975 


Q ss_pred             CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe--eCCCeEEEEecCCC
Q 014644          279 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG  336 (421)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~--s~dg~i~iwd~~~~  336 (421)
                      .+.+.....|....              ......+..++.++..  |.|..++.|++...
T Consensus       134 ~k~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  134 NKVLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             CceeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            66665555554210              0234444456666666  77778888887754

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.15  E-value=0.87  Score=39.23  Aligned_cols=138  Identities=12%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             ceeEEEEcCCCCEEEEec--C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          249 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~--~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      .+.+.+++++|+.++.-.  +  ..++++...  +.......+. ..                ...+|++++...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~-~l----------------~~PS~d~~g~~W~v~~~   85 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG-SL----------------TRPSWDPDGWVWTVDDG   85 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC-cc----------------ccccccCCCCEEEEEcC
Confidence            688999999999887644  3  556666543  3333222322 11                57899999887777776


Q ss_pred             CCeEEEEe-cCCCCCceeEEecCC--CCccceeeecCCcccccccceeeeeccc--CcccC------CCCC---cccc--
Q 014644          325 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HHEL--  388 (421)
Q Consensus       325 dg~i~iwd-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~d--~~~iw------~~~~---~~~~--  388 (421)
                      +...+++. ...+......+....  ..|..+.++|+  |.     .++.-..+  +.++|      +..+   .+..  
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD--G~-----RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~  158 (253)
T PF10647_consen   86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD--GT-----RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR  158 (253)
T ss_pred             CCceEEEEecCCCcceeEEecccccCCceEEEEECCC--Cc-----EEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence            67767664 333322233333222  27889999998  55     33333322  22666      2222   1111  


Q ss_pred             --ccccccCeEEEEEccCCCeEEEec
Q 014644          389 --SYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       389 --~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                        .......+++++|.+++.+++.+.
T Consensus       159 ~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  159 RVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             EecccccCcceeeeecCCCEEEEEeC
Confidence              112346789999999999888776

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.05  E-value=0.93  Score=45.14  Aligned_cols=94  Identities=18%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644          301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  380 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw  380 (421)
                      +...|+|..+.++|+|++|+..+..|. .|-.+...-.....+++....+.+..+.-+                      
T Consensus        81 ~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~----------------------  137 (717)
T PF10168_consen   81 NPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVD----------------------  137 (717)
T ss_pred             CCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEec----------------------
Confidence            456678899999999999988887554 444443210011222222233322222222                      


Q ss_pred             CCCCccccccccccCeEEEEEccCC---C-eEEEecCCceEEEeC
Q 014644          381 SSSGHHELSYNLSSKLLHLAWHPTT---N-LIACANGNSLFFHYA  421 (421)
Q Consensus       381 ~~~~~~~~~~~~~~~v~~~~~spd~---~-~la~~~~~~~~i~~~  421 (421)
                         +... .......|..+.|||.+   . +++-.+++.+++|+.
T Consensus       138 ---~~~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  138 ---ERFF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI  178 (717)
T ss_pred             ---hhhc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence               0000 11224678999999984   4 455566888999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.05  E-value=2.6  Score=38.19  Aligned_cols=165  Identities=13%  Similarity=0.071  Sum_probs=71.1

Q ss_pred             CCcceEEEeecCCCC-EEEEE----cCCc-EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---
Q 014644          137 HDFNINSISNNSDCE-TFVSA----DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---  207 (421)
Q Consensus       137 h~~~v~~l~~~~~~~-~l~s~----~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---  207 (421)
                      -...+..+.|+|... +|+-|    .+.. -|||-+++.+...+.+.  +   ..-...+..=-|.|+| ..|..-+   
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~---~~~~e~~gHEfw~~DG-~~i~y~~~~~  259 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--R---RMEGESVGHEFWVPDG-STIWYDSYTP  259 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--c---CCCCcccccccccCCC-CEEEEEeecC
Confidence            345677888999544 44444    3442 47787765554444331  0   1112344555689999 5444322   


Q ss_pred             --cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC----------------C
Q 014644          208 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY----------------M  268 (421)
Q Consensus       208 --~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~----------------~  268 (421)
                        .+..|.-+|+.++...    ....               .....-+..++||++++. |++                .
T Consensus       260 ~~~~~~i~~~d~~t~~~~----~~~~---------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p  320 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGERR----RLME---------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP  320 (386)
T ss_dssp             TT--EEEEEE-TTT--EE----EEEE---------------E-SEEEEEE-TTSSEEEEEE-------------------
T ss_pred             CCCceEEEeeCCCCCCce----EEEe---------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence              2335666777765421    1111               123445566788888874 332                1


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEe
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFS  332 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd  332 (421)
                      .|+++++.. +... .+..|......+........    ....|+|||++++-.| ..|...||=
T Consensus       321 ~i~~~~~~~-~~~~-~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  321 WIYLFDVEA-GRFR-KLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             EEEEEETTT-TEEE-EEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             EEEEecccc-Ccee-eeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEE
Confidence            456677764 3322 22223211100000000000    3689999999977655 466655553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.02  E-value=1  Score=41.27  Aligned_cols=110  Identities=12%  Similarity=0.048  Sum_probs=55.4

Q ss_pred             cceEEEeecCCCCEEEEE-c-----------CC-cEEEEeCCCC-ce--eeeeeecCCCCCCccCCCeeEEEEecCCCCe
Q 014644          139 FNINSISNNSDCETFVSA-D-----------DL-RINLWNLEIS-DQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  202 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~-----------d~-~i~lwd~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  202 (421)
                      .....++|.++|+++++- .           .+ .|.+++-... +.  ...++       .........+++.+++   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-------a~~l~~p~Gi~~~~~G---   83 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-------AEELSMVTGLAVAVGG---   83 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-------ecCCCCccceeEecCC---
Confidence            346788999999988874 2           12 6666653212 22  12222       2223345788998886   


Q ss_pred             EEEEEcCCeEEEEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          203 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       203 l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      |+.++.....++.|.......+ +...++..  ....    -..+......++|.|||.+.++
T Consensus        84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~----~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        84 VYVATPPDILFLRDKDGDDKADGEREVLLSG--FGGQ----INNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             EEEeCCCeEEEEeCCCCCCCCCCccEEEEEc--cCCC----CCcccccccCceECCCCCEEEe
Confidence            4444444433444554322111 11111111  0000    0001345789999999987665

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.94  E-value=2.3  Score=37.10  Aligned_cols=125  Identities=10%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             eEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeee--eec-CC---CCCCccCCCeeEEE--EecCCCCeEEEEEcCCeE
Q 014644          141 INSISNNSDCETFVSADDLRINLWNLEISDQCFNI--VDM-KP---SNMDDLTEVITSAE--FHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~--~~~-~~---~~~~~~~~~v~~~~--~~p~~~~~l~s~~~d~~v  212 (421)
                      |..+...|+-+.|++-.|+.+.++++..-......  ... +.   .........+...+  -...+ ...+.......|
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEE
Confidence            88888888887777767799999998732211100  000 00   00011122333333  11333 344445556689


Q ss_pred             EEEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCccee
Q 014644          213 RLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVA  283 (421)
Q Consensus       213 ~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~  283 (421)
                      .+|......... ...+.+..              ...+..++|.  ++.++.|......+.|+.+ +....
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~~~  171 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSPSE  171 (275)
T ss_pred             EEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEecCC-CCceE
Confidence            988877642211 22233333              4678899998  6677777666789999985 54433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.91  E-value=0.89  Score=41.56  Aligned_cols=133  Identities=10%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             eEEEeecCCCCEEEEE-c--------------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--
Q 014644          141 INSISNNSDCETFVSA-D--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--  197 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~--------------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--  197 (421)
                      -..+-|.|..+.++|+ .                    ..++.+||+. ..+.++++++.     ........+.|..  
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P  256 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDP  256 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SST
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCC
Confidence            3566667777777764 2                    3579999999 67788887532     2223456677754  


Q ss_pred             CCCCeEEEEEcCCeEEEEEC-CcccccccchhhhccccccCCCc-------ccccccccceeEEEEcCCCCEEEEecC--
Q 014644          198 IYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSK-------SFFTEIIASISDIKFANDGQHLLSRDY--  267 (421)
Q Consensus       198 ~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~--  267 (421)
                      +...-++.+....+|..|-- ..++-..+  ++++. ...+...       ..+..-..-++.|.+|.|.++|..++-  
T Consensus       257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~i-p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~  333 (461)
T PF05694_consen  257 DANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDI-PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH  333 (461)
T ss_dssp             T--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE---EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred             CccceEEEEeccceEEEEEEcCCCCeeee--EEEEC-CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence            44233444445555554433 33321111  11111 0000000       112222456899999999999988754  


Q ss_pred             CeEEEEECCCCCcce
Q 014644          268 MNLKLWDIRMDSTPV  282 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~  282 (421)
                      |.|+.||+.....+.
T Consensus       334 GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  334 GDVRQYDISDPFNPK  348 (461)
T ss_dssp             TEEEEEE-SSTTS-E
T ss_pred             CcEEEEecCCCCCCc
Confidence            999999997644443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.83  E-value=0.12  Score=29.95  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=26.6

Q ss_pred             CCeeEEEEecCCC--CeEEEEEcCCeEEEEECCc
Q 014644          188 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       188 ~~v~~~~~~p~~~--~~l~s~~~d~~v~iwd~~~  219 (421)
                      +.++++.|+|...  .+|+.+...+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3689999998762  4888888889999999995

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=0.7  Score=46.94  Aligned_cols=152  Identities=11%  Similarity=0.002  Sum_probs=90.2

Q ss_pred             ceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeee--ecC-CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          140 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIV--DMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      .+..+..++|++..+..   .+-.|..||+++-.......  .++ ..+.........++.|+|.-+...+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45566667787766653   44578899987322111000  000 0111222344567889998656677778899998


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +..+......   ...+..              ....++++|+|.|+.++.|.. |++..|...  .+....+.+...  
T Consensus       182 V~~~~~~~~~---v~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~--  240 (1405)
T KOG3630|consen  182 VKSTKQLAQN---VTSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV--  240 (1405)
T ss_pred             hhhhhhhhhh---hcccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc--
Confidence            8876543221   122222              457899999999999999977 999988764  343333333221  


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEE
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFAT  321 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~  321 (421)
                            +++   +.|.+++|-....++++
T Consensus       241 ------~e~---yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  241 ------EEN---YRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ------CCC---cceeEEEEecceeEEEE
Confidence                  122   23378888776666653

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.81  E-value=1.9  Score=35.79  Aligned_cols=143  Identities=11%  Similarity=0.038  Sum_probs=83.9

Q ss_pred             CcceEEEeecCCCCEEEEE-cC---------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      ..+.+.-..+|+|++.+-. .|         |.++.|-..  .+.-.+        ...-..-..++|+.+...+.+.-+
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs  177 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS  177 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence            4456677789999996653 33         344444443  211111        122233457889988734445556


Q ss_pred             cCCeEEEEE--CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeE
Q 014644          208 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       208 ~d~~v~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~  284 (421)
                      .+-+|.-||  ..++..... ..+++.....+.       .......+++..+|.+.++.-. ++|...|..+ ++.+..
T Consensus       178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~-------e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e  248 (310)
T KOG4499|consen  178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPF-------ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE  248 (310)
T ss_pred             CceEEeeeecCCCcccccCc-ceeEEeccCCCc-------CCCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence            778887787  666553321 122322100000       0123345666777887777644 8999999987 998888


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                      +..+...+               +++||--
T Consensus       249 iklPt~qi---------------tsccFgG  263 (310)
T KOG4499|consen  249 IKLPTPQI---------------TSCCFGG  263 (310)
T ss_pred             EEcCCCce---------------EEEEecC
Confidence            88776544               7888864

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.65  E-value=0.16  Score=41.59  Aligned_cols=141  Identities=12%  Similarity=0.057  Sum_probs=79.9

Q ss_pred             eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCc
Q 014644          202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST  280 (421)
Q Consensus       202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~  280 (421)
                      .+...+.|+.|+-++++............                ...   .....-+..++.|+ +|.|++|.....+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~----------------~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~   92 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFI----------------DEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA   92 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhh----------------hcc---eeecccCceEEeecccceEEEecCCccch
Confidence            45556778888888877643221110000                111   11112345566664 49999999874344


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC-CCccceeeecCC
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAP  359 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~  359 (421)
                      ....+......+.              ..+.-..++.+..++..||.||.|++... ........|. .+......... 
T Consensus        93 ~~d~~~s~~e~i~--------------~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~s-  156 (238)
T KOG2444|consen   93 HSDRVCSGEESID--------------LGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGS-  156 (238)
T ss_pred             HHHhhhcccccce--------------eccccccccceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecC-
Confidence            3332222222110              12222335668889999999999999977 4455555565 55555555544 


Q ss_pred             cccccccceeeee--cccCc-ccCCCC
Q 014644          360 RARRSSLSNLTRG--LYRQA-HENSSS  383 (421)
Q Consensus       360 ~~~~~~~~~l~~g--~~d~~-~iw~~~  383 (421)
                       +     .+++..  +.+.. +.|..+
T Consensus       157 -d-----~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  157 -D-----EFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             -C-----ceEEeeccccchhhhhcchh
Confidence             2     266666  77777 999554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.35  E-value=2.8  Score=35.39  Aligned_cols=107  Identities=9%  Similarity=0.021  Sum_probs=66.7

Q ss_pred             CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh
Q 014644          151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  229 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  229 (421)
                      ++++.| ..+.+.--|..++...++.+         -..++.+-+.- -| .+++.|...|.+++.+..+|....    .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w----~   88 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIW----N   88 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhhee----e
Confidence            344445 66777777776443333322         12334333333 24 679999999999999999986442    1


Q ss_pred             hccccccCCCcccccccccce-eEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEee
Q 014644          230 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       230 ~~~h~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      +..              .+.| ......+++.+|..|+. ++.+..|.++ ...+.+.+.
T Consensus        89 f~~--------------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskc  133 (354)
T KOG4649|consen   89 FVI--------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKC  133 (354)
T ss_pred             eee--------------hhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEeccc
Confidence            111              1112 23456778999999976 9999999987 555555443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.35  E-value=0.16  Score=29.51  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=24.2

Q ss_pred             ceeEEEEcCCC---CEEEEecC-CeEEEEECCC
Q 014644          249 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM  277 (421)
Q Consensus       249 ~v~~~~~s~~~---~~l~~~~~-~~i~i~d~~~  277 (421)
                      .+.+++|+|+.   .+|+.+.+ +.+.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999854   58888877 9999999984

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.25  E-value=0.41  Score=40.09  Aligned_cols=79  Identities=9%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  274 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d  274 (421)
                      +..++ .++++.+.+|.+++||+.+++...+...+... ........  ......|..+.++.+|.-+++-++|..+.|+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            44566 78999999999999999998765333222111 00000000  0235678889999899888877778889998


Q ss_pred             CCC
Q 014644          275 IRM  277 (421)
Q Consensus       275 ~~~  277 (421)
                      ...
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.14  E-value=7.3  Score=39.44  Aligned_cols=102  Identities=14%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             CCcceeeeEEEEcCC-CCEEEEeeC----------CCeEEEEecCCCCCceeEEecC--CCCccceeeecCCcccccccc
Q 014644          301 NDSIFDKFECSVSGD-GLHFATGSY----------SNLLRIFSHGVGSAGGITVEAG--KNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~-~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  367 (421)
                      ++....+.++.|..| +.++++|..          .|.|.++.+... ........+  .+.+.++..-.   |      
T Consensus       771 ~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~fn---g------  840 (1096)
T KOG1897|consen  771 NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVEFN---G------  840 (1096)
T ss_pred             cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-CceeeeeeeeeccceeehhhhC---C------
Confidence            445555567789887 777877763          578888888873 222222222  22222222211   2      


Q ss_pred             eeeeecccCccc--CCCCCccccccccccCeEEEEEccCCCeEEEec
Q 014644          368 NLTRGLYRQAHE--NSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       368 ~l~~g~~d~~~i--w~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                      .+..|-....++  |..+..+.....+...+..+...-.|..+|+|.
T Consensus       841 kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD  887 (1096)
T KOG1897|consen  841 KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD  887 (1096)
T ss_pred             eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence            234443333344  455545555556677777888888888888876

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.08  E-value=7.2  Score=39.11  Aligned_cols=84  Identities=17%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCC----------ce--eeeeeecCCCCC-CccCCCeeEEEEecCC--CCe
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEIS----------DQ--CFNIVDMKPSNM-DDLTEVITSAEFHPIY--CNL  202 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~~  202 (421)
                      .-.|..+.++|+|++|+......|.|-.+...          ..  ..+++.+....+ ..+...|..+.|+|.+  ...
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34789999999999999873344555444211          01  112222221122 2345678999999974  367


Q ss_pred             EEEEEcCCeEEEEECCccc
Q 014644          203 LAYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       203 l~s~~~d~~v~iwd~~~~~  221 (421)
                      |+.-..|+++|+||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888899999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.49  E-value=0.8  Score=42.19  Aligned_cols=48  Identities=15%  Similarity=0.072  Sum_probs=39.0

Q ss_pred             ccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          243 FTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      +.+....+.++..+|++++.++.+. |.|.++|+.+ +..++.+++..+.
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdA  351 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDA  351 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccc
Confidence            4455567889999999988888766 9999999986 8888888876653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.46  E-value=1.9  Score=41.91  Aligned_cols=69  Identities=13%  Similarity=0.142  Sum_probs=42.5

Q ss_pred             ceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEc--CCCCEEEEeeC
Q 014644          249 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS--GDGLHFATGSY  324 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s--p~~~~l~~~s~  324 (421)
                      .+.-+.-+.-++..++.++ ..+.|||.+. +.....-. .....            |   .++.|.  |+|+.+++.+.
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~------------I---~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESFSEDDP------------I---RDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeeecCCCc------------e---eeceeeecCCCCEEEEEEc
Confidence            3444445555555555555 7899999975 44221111 11111            1   566654  68999999999


Q ss_pred             CCeEEEEec
Q 014644          325 SNLLRIFSH  333 (421)
Q Consensus       325 dg~i~iwd~  333 (421)
                      .+.|.++--
T Consensus        95 ~~~v~l~~Q  103 (631)
T PF12234_consen   95 PHHVLLYTQ  103 (631)
T ss_pred             CcEEEEEEc
Confidence            999999863

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.39  E-value=6.9  Score=36.61  Aligned_cols=248  Identities=14%  Similarity=0.153  Sum_probs=111.8

Q ss_pred             EEEEcCCCCeEEEE-eCCC----cEEEeecCCceeEE--eeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           40 RWCAAPNGSMFILS-TNDK----TIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        40 ~~~~~~~~~~l~t~-s~d~----~v~lwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .|..+|+++++|.+ +..|    +|++.|+.+++...  +.....    ..+.|......++-..........   ...-
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~----~~~~W~~d~~~~~y~~~~~~~~~~---~~~~  200 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF----SSVSWSDDGKGFFYTRFDEDQRTS---DSGY  200 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES----EEEEECTTSSEEEEEECSTTTSS----CCGC
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc----ceEEEeCCCCEEEEEEeCcccccc---cCCC
Confidence            34448999998866 3333    69999999987322  111110    013344333333322222111100   0000


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcc--eEEEeecCCCCEEEEE--c--C-CcEEEEeCCCC---ceeeeeeecCCCC
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCETFVSA--D--D-LRINLWNLEIS---DQCFNIVDMKPSN  182 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~--~--d-~~i~lwd~~~~---~~~~~~~~~~~~~  182 (421)
                      ...+..|.+.+.... ....+ .+....  ...+..++|+++|+..  .  + ..+.+.+....   ....+.+      
T Consensus       201 ~~~v~~~~~gt~~~~-d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l------  272 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSE-DELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL------  272 (414)
T ss_dssp             CEEEEEEETTS-GGG--EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE------
T ss_pred             CcEEEEEECCCChHh-CeeEE-eecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE------
Confidence            124566666654322 12333 332222  5678889999998863  2  3 45777787732   1222222      


Q ss_pred             CCccCCCe-eEEEEecCCCCeEEEEE---cCCeEEEEECCcccccccchhhhccccccCCCccccccccc--ceeEEEEc
Q 014644          183 MDDLTEVI-TSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFA  256 (421)
Q Consensus       183 ~~~~~~~v-~~~~~~p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~~~~s  256 (421)
                       ......+ ..+... .+ .+++...   ..+.|...++......... ..+             ..+..  .+..+.. 
T Consensus       273 -~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l-------------~~~~~~~~l~~~~~-  334 (414)
T PF02897_consen  273 -SPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWW-TVL-------------IPEDEDVSLEDVSL-  334 (414)
T ss_dssp             -EESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEE-------------E--SSSEEEEEEEE-
T ss_pred             -eCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccce-eEE-------------cCCCCceeEEEEEE-
Confidence             1222233 333333 33 4444332   2356666676664421000 011             11133  3444444 


Q ss_pred             CCCCEEEEe--cC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE--EeeC--CCeE
Q 014644          257 NDGQHLLSR--DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA--TGSY--SNLL  328 (421)
Q Consensus       257 ~~~~~l~~~--~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~--~~s~--dg~i  328 (421)
                       .+.+|+..  .+  ..|+++++.. +.....+......              .+..+...+++..+.  ..|.  -+++
T Consensus       335 -~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g--------------~v~~~~~~~~~~~~~~~~ss~~~P~~~  398 (414)
T PF02897_consen  335 -FKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAG--------------SVSGVSGDFDSDELRFSYSSFTTPPTV  398 (414)
T ss_dssp             -ETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSS--------------EEEEEES-TT-SEEEEEEEETTEEEEE
T ss_pred             -ECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcce--------------EEeccCCCCCCCEEEEEEeCCCCCCEE
Confidence             35555543  23  6789999872 3444444333221              013444445544432  2222  3578


Q ss_pred             EEEecCCC
Q 014644          329 RIFSHGVG  336 (421)
Q Consensus       329 ~iwd~~~~  336 (421)
                      +-||+.++
T Consensus       399 y~~d~~t~  406 (414)
T PF02897_consen  399 YRYDLATG  406 (414)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            88888877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.28  E-value=5.9  Score=39.15  Aligned_cols=166  Identities=13%  Similarity=0.059  Sum_probs=88.6

Q ss_pred             CCEEEEEcCCcEEEEeCCCCceeee-----eeecCCCCCC---------ccCCCeeEEEEecCC-CCeEEEEEcCCeEEE
Q 014644          150 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL  214 (421)
Q Consensus       150 ~~~l~s~~d~~i~lwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~v~~~~~~p~~-~~~l~s~~~d~~v~i  214 (421)
                      ..+|+.+..+.|.||+.+.-.+...     .+..++....         .....|..+...--| ...|+.+..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            7788888888999999873322111     1111111000         011224444332211 257888899999999


Q ss_pred             EECCcccccccchhhhcccccc----C-CCcccccccccceeEEEEc--CCCCEEEEecC-CeEEEEECCCC-Ccc-eeE
Q 014644          215 VDMRQSALCDHSARILRDAAES----H-GSKSFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMD-STP-VAT  284 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~----~-~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-~~i~i~d~~~~-~~~-~~~  284 (421)
                      |.+..-...   ......-.+.    . ....+...-...+++++++  ...++||+++. ..|.||-.... .+. ...
T Consensus       129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  129 YYTETIIEA---IERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEHHHHHHH---HHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence            987542100   0000000000    0 0011122234578999998  77888888876 77777765431 111 100


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCC-----CC-EEEEeeCCCeEEEEec
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL-HFATGSYSNLLRIFSH  333 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~-~l~~~s~dg~i~iwd~  333 (421)
                      -..+...+               .+++|-++     |. +|++++-.|.+.+|++
T Consensus       206 s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            00122222               47777664     22 7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.21  E-value=0.71  Score=38.69  Aligned_cols=78  Identities=10%  Similarity=0.023  Sum_probs=48.2

Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccc
Q 014644          310 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS  389 (421)
Q Consensus       310 ~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~  389 (421)
                      +.+..++.+|++-+.+|.+++||+.+...   .+..  ..+..+... .                          . ...
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~---~~~~--~Si~pll~~-~--------------------------~-~~~   62 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKA---VLPP--VSIAPLLNS-S--------------------------P-VSD   62 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCee---ccCC--ccHHHHhcc-c--------------------------c-ccc
Confidence            34556789999999999999999997621   1111  000000000 0                          0 000


Q ss_pred             cccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          390 YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       390 ~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ......|..+..+.+|.-|++-+++..|.|+
T Consensus        63 ~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   63 KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            0224668888888888888888877788886

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.02  E-value=5.4  Score=36.63  Aligned_cols=73  Identities=10%  Similarity=0.088  Sum_probs=38.8

Q ss_pred             CCeeEEEEecCCCCeEEEEE-----------cCC-eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644          188 EVITSAEFHPIYCNLLAYSS-----------SRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~-----------~d~-~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  255 (421)
                      .....++|.++| +++++-.           ..+ .|.+++-..+.-......++..             .......+++
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-------------~l~~p~Gi~~   79 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-------------ELSMVTGLAV   79 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-------------CCCCccceeE
Confidence            446788999998 7666542           122 6766654432211111112211             1235688999


Q ss_pred             cCCCCEEEEecCCeEE-EEECC
Q 014644          256 ANDGQHLLSRDYMNLK-LWDIR  276 (421)
Q Consensus       256 s~~~~~l~~~~~~~i~-i~d~~  276 (421)
                      .++| ++++. ...|. +.|..
T Consensus        80 ~~~G-lyV~~-~~~i~~~~d~~   99 (367)
T TIGR02604        80 AVGG-VYVAT-PPDILFLRDKD   99 (367)
T ss_pred             ecCC-EEEeC-CCeEEEEeCCC
Confidence            9988 55543 33444 44553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.79  E-value=9.5  Score=36.61  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             CCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          315 DGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      .+..|+.++.||.|+.+|..+++..
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCcee
Confidence            4578889999999999999998443

The alignment model contains an 8-bladed beta-propeller.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.79  E-value=2.6  Score=39.29  Aligned_cols=91  Identities=21%  Similarity=0.219  Sum_probs=50.5

Q ss_pred             cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCC
Q 014644          303 SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS  382 (421)
Q Consensus       303 ~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~  382 (421)
                      -.|.|..+..++.|..++-.+.+|.+.++=-+.. .....+.-....|.+-.+.-+                        
T Consensus       102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw-G~~s~~eDgk~~v~CRt~~i~------------------------  156 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRW-GKNSEFEDGKSTVNCRTTPVA------------------------  156 (741)
T ss_pred             ceEEEEEEEecCCCceEEEecCCeeEEEEchhhc-CccceecCCCceEEEEeeccc------------------------
Confidence            3446678899999999988888887655332211 111222222222222222222                        


Q ss_pred             CCccccccccccCeEEEEEccCC----CeEEEecCCceEEEe
Q 014644          383 SGHHELSYNLSSKLLHLAWHPTT----NLIACANGNSLFFHY  420 (421)
Q Consensus       383 ~~~~~~~~~~~~~v~~~~~spd~----~~la~~~~~~~~i~~  420 (421)
                       ..+.... ..-.+..++|||+.    .+++..+++.+++|+
T Consensus       157 -~~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~  196 (741)
T KOG4460|consen  157 -ERFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS  196 (741)
T ss_pred             -ceeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence             1111111 12346788999986    556666788899997

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.48  E-value=5.2  Score=36.75  Aligned_cols=129  Identities=11%  Similarity=0.042  Sum_probs=72.9

Q ss_pred             EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccc
Q 014644          142 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~  221 (421)
                      +.+-|....+.|++...|.+.=|-+...+..+.+     ..-....++|.++.|++|. +.||.--.+++|.+++....+
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence            4455554455555446666777776533322111     0112244699999999998 999999999999999974432


Q ss_pred             ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccC
Q 014644          222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ...   .....|          +.....|.+..|+.+ .-+|.-++..+-+|........++..+.+..
T Consensus       100 ~~l---~~~~~c----------k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~  154 (657)
T KOG2377|consen  100 SQL---EYTQEC----------KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNL  154 (657)
T ss_pred             hhh---HHHHHh----------ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhccc
Confidence            111   111110          112446889999866 4455444434666665443444444444443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.38  E-value=14  Score=37.57  Aligned_cols=196  Identities=11%  Similarity=0.039  Sum_probs=93.3

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CC----EE
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQ----HL  262 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~----~l  262 (421)
                      .++....+.+. ..++.++.++.+...++..+.+.....+.+                ...|.|+.++|-  ++    ++
T Consensus       489 ~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~----------------e~evaCLDisp~~d~~~~s~~~  551 (1096)
T KOG1897|consen  489 KITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEF----------------EYEVACLDISPLGDAPNKSRLL  551 (1096)
T ss_pred             ceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeehee----------------cceeEEEecccCCCCCCcceEE
Confidence            34444444454 567777777877777777655221111222                357899999974  22    56


Q ss_pred             EEecC-C-eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-
Q 014644          263 LSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-  339 (421)
Q Consensus       263 ~~~~~-~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-  339 (421)
                      +.|.. . .+.+.-+.. ...+.........+++.           +.-.++-.|..+|.++..||.+..+.+....-. 
T Consensus       552 aVG~Ws~~~~~l~~~pd-~~~~~~~~l~~~~iPRS-----------Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  552 AVGLWSDISMILTFLPD-LILITHEQLSGEIIPRS-----------ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             EEEeecceEEEEEECCC-cceeeeeccCCCccchh-----------eeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence            77743 2 233333322 33332222211111110           123455556889999999999876655543111 


Q ss_pred             --eeEEecCCCCccceeeecCCcccccccceeeeecccCcccC-CCCCccccccccccCeEEEEEccC--CCeEEEecCC
Q 014644          340 --GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPT--TNLIACANGN  414 (421)
Q Consensus       340 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw-~~~~~~~~~~~~~~~v~~~~~spd--~~~la~~~~~  414 (421)
                        .+...-...|+.-..|+..  ++    ..+.+.++.-.-++ ..+.+.......+..-.-+.|+.+  ...||++..+
T Consensus       620 sd~Kk~~lGt~P~~Lr~f~sk--~~----t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~  693 (1096)
T KOG1897|consen  620 SDRKKVTLGTQPISLRTFSSK--SR----TAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG  693 (1096)
T ss_pred             ccccccccCCCCcEEEEEeeC--Cc----eEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC
Confidence              1111223344444444433  22    13333333333333 333333332222222122334333  3457777777


Q ss_pred             ceEEE
Q 014644          415 SLFFH  419 (421)
Q Consensus       415 ~~~i~  419 (421)
                      .+.|.
T Consensus       694 ~l~i~  698 (1096)
T KOG1897|consen  694 ALTIG  698 (1096)
T ss_pred             ceEEE
Confidence            77664

>PRK13684 Ycf48-like protein; Provisional

Probab=92.08  E-value=8.9  Score=34.64  Aligned_cols=158  Identities=10%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ...+.++.+.|++.+++++..|.+..- .+..++......      ..-...++++.+.|++ ..++. +..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~------~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQ------RNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEee------CCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence            456889999999988888877765432 121233333321      2234678899999988 66554 45676653233


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      ..+..       |.. ...+..     .....+..+.+.|++..++++..|.+.. ... .++.-...........    
T Consensus       243 d~G~s-------W~~-~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~----  303 (334)
T PRK13684        243 DDLES-------WSK-PIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPS----  303 (334)
T ss_pred             CCCCc-------ccc-ccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCc----
Confidence            33321       211 000000     0023567889999888888877665543 332 2333222221111100    


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                              ..+.+.|..+++.++ .+..|.|--|+
T Consensus       304 --------~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        304 --------NFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             --------ceEEEEEeCCCceEE-ECCCceEEEec
Confidence                    115677776666655 44567776665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.76  E-value=13  Score=36.51  Aligned_cols=79  Identities=14%  Similarity=0.146  Sum_probs=45.5

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      +.+..+.-.|. .+-.+.|+.+..+|+...+|++.+|++-  ++......+   -.+.....|..+.|..+|   ++.-.
T Consensus        74 ~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~sv---g~e~~~~~I~ec~~f~~G---Vavlt  144 (829)
T KOG2280|consen   74 QLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSV---GFESQMSDIVECRFFHNG---VAVLT  144 (829)
T ss_pred             cchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc--hhhhccccc---ccccccCceeEEEEecCc---eEEEe
Confidence            44444423444 7889999988888887899999999987  333322100   012223345555555566   34334


Q ss_pred             cCCeEEEE
Q 014644          208 SRGFVRLV  215 (421)
Q Consensus       208 ~d~~v~iw  215 (421)
                      .+|.+.+-
T Consensus       145 ~~g~v~~i  152 (829)
T KOG2280|consen  145 VSGQVILI  152 (829)
T ss_pred             cCCcEEEE
Confidence            45555433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.38  E-value=0.2  Score=49.33  Aligned_cols=130  Identities=10%  Similarity=0.044  Sum_probs=70.5

Q ss_pred             cceEEEeecC---CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE-----------EecCCCCeE
Q 014644          139 FNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-----------FHPIYCNLL  203 (421)
Q Consensus       139 ~~v~~l~~~~---~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~p~~~~~l  203 (421)
                      ..+.-+.|.|   +.-++..+ +++++++.++++..+  .++       .+|...+..++           .+||| ..+
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~-------rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~  250 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLF-------RSHSQRVTDMAFFAEGVLKLASLSPDG-TVF  250 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHH-------HhcCCCcccHHHHhhchhhheeeCCCC-cEE
Confidence            3345555554   56666677 899999988873332  222       44655444332           68999 999


Q ss_pred             EEEEcCCeEEEEECCc-ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc
Q 014644          204 AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST  280 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~  280 (421)
                      +.++.||.+++|.+.- +.......+.|..|...+.....  .|+..+..+... --.+++++++  ..+++|.... .+
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l--c~~~~~~~v~i~-~w~~~Itttd~nre~k~w~~a~-w~  326 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL--CHKQEILVVSIG-KWVLRITTTDVNREEKFWAEAP-WQ  326 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee--eccccccCCccc-eeEEEEecccCCcceeEeeccc-hh
Confidence            9999999999987653 22222233555554211111111  111111111100 1124556666  6799998764 44


Q ss_pred             ce
Q 014644          281 PV  282 (421)
Q Consensus       281 ~~  282 (421)
                      ++
T Consensus       327 Cl  328 (1283)
T KOG1916|consen  327 CL  328 (1283)
T ss_pred             hh
Confidence            43

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.01  E-value=2.3  Score=38.86  Aligned_cols=172  Identities=10%  Similarity=-0.020  Sum_probs=89.9

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCcee-eeeeecCCCCCCc-cCCCee-EEEEecCCCCeEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC-FNIVDMKPSNMDD-LTEVIT-SAEFHPIYCNLLA  204 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~  204 (421)
                      +.++.+ ..-...|..+-..|||+.|..-....+.++++....-. .+..+..    ++ ....|+ ++..-..| ..++
T Consensus       211 e~i~~L-~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLL  284 (733)
T COG4590         211 EIIRLL-SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLL  284 (733)
T ss_pred             hhhhhc-CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEE
Confidence            334444 45556778888899999988864478888888722111 1111110    11 001122 12223344 6788


Q ss_pred             EEEcCCeEEEE-ECCcccc-cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc
Q 014644          205 YSSSRGFVRLV-DMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP  281 (421)
Q Consensus       205 s~~~d~~v~iw-d~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~  281 (421)
                      .++.||.|.-| |++.+.. .-.+.+.+..             ...++..+.-..+.+-+++-.. |++.++.... .+.
T Consensus       285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l-------------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~  350 (733)
T COG4590         285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKL-------------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKL  350 (733)
T ss_pred             EEcCCCceeeeeeeecCCCCcceeeecccc-------------CcccceeeccccccceEEEEcCCCceeeeeccc-Ccc
Confidence            88999998877 6554321 1111111111             0123333332223334444444 7777766533 222


Q ss_pred             eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +-.-...+..                .-+++||++.++++-. .|.|+++.+++.
T Consensus       351 lL~~~~~~~~----------------~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         351 LLFERAYQAP----------------QLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             eehhhhhcCc----------------ceeeeCcccchheeec-CCceEEEEecCC
Confidence            2211111221                3579999998887543 588999998876

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.89  E-value=9.6  Score=32.71  Aligned_cols=113  Identities=16%  Similarity=0.063  Sum_probs=66.2

Q ss_pred             CCeeEEEEecCCCCeEEEEEcCC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      .-...+.|..++ .++-+.+.-|  .|+.+|+.+++...+  ..+..              .---..++...|.-+.++=
T Consensus        45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~--~~l~~--------------~~FgEGit~~~d~l~qLTW  107 (264)
T PF05096_consen   45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQS--VPLPP--------------RYFGEGITILGDKLYQLTW  107 (264)
T ss_dssp             -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEE--EE-TT--------------T--EEEEEEETTEEEEEES
T ss_pred             ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEE--EECCc--------------cccceeEEEECCEEEEEEe
Confidence            345678887777 7777777655  799999999864411  01111              0011234444322222232


Q ss_pred             cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       266 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ..+...+||..+ -+.+.++.-....                +.++  .|++.|+.......|+++|-.+.
T Consensus       108 k~~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  108 KEGTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             SSSEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             cCCeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCccc
Confidence            348999999986 6777777654332                5777  46777777777889999997765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=6.6  Score=36.13  Aligned_cols=106  Identities=9%  Similarity=0.134  Sum_probs=67.5

Q ss_pred             CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      ...++|.++.|++|.+.||.- .+.+|.+.+...........    .+....+..|....|+.+  .-+|..+..| +-+
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~----~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~  136 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT----QECKTKNANILGFCWTSS--TEIAFITDQG-IEF  136 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH----HHhccCcceeEEEEEecC--eeEEEEecCC-eEE
Confidence            445699999999999999998 99999999985222111110    011334456889999876  4566665555 556


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      |-.......   ++....             |.-.|+-..|.++-+.++-
T Consensus       137 y~v~pekrs---lRlVks-------------~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  137 YQVLPEKRS---LRLVKS-------------HNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             EEEchhhhh---hhhhhh-------------cccCccEEEEccccceEee
Confidence            654432211   233333             3567888888888776543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.51  E-value=5.7  Score=36.78  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC-eeEEEEecC--------------
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPI--------------  198 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~--------------  198 (421)
                      ......+.++..+|++++.|+. .-|.|.|+|+. .+..+++.       ++..+. +.-+.....              
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence            4445568899999999988888 78999999998 55555543       222211 000000000              


Q ss_pred             ---CCCeEEEEEcCCeEEEEECCccc
Q 014644          199 ---YCNLLAYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       199 ---~~~~l~s~~~d~~v~iwd~~~~~  221 (421)
                         ..-+++.+-.-|.|-||.++.+.
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCC
Confidence               00234556678999999999865

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.54  E-value=15  Score=33.00  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCe------EEEEECCcccccccchhhhcccc-ccCCCcccccccccceeEEEEcCCCC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGF------VRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~------v~iwd~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      +.+..+.+.|++ ..+++.+.+|.      +..+++...............+. ..+. ...+....-...+|++.++|.
T Consensus        20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPD-GQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCC-CCcCCcCCCChhHeEEecCCC
Confidence            567889999766 67777788877      55555543110000001111000 0000 001111112455788877887


Q ss_pred             EEEEec-C------CeEEEEECCCCCcceeEEeeccCccccc---ccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          261 HLLSRD-Y------MNLKLWDIRMDSTPVATFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       261 ~l~~~~-~------~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      ++++.. .      ..|+-++..  ++....+..+.......   .....|..+   -+++++|+|+.|+++.+
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEEC
Confidence            777753 2      456666653  66666554333221100   111222222   68999999997776654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.20  E-value=16  Score=32.83  Aligned_cols=65  Identities=12%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             ceEEEeecCCCCEEEEE-cC------CcEEEEeCCCCceeeeeeecCCC--------CCCccCCCeeEEEEecCCCCeEE
Q 014644          140 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                      ...+|++.+++.++++. .+      ..|..++..  +...+.+.+...        .-........+++++|+| +.|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence            34567777889999988 77      778888866  444443322211        112244568899999999 7565


Q ss_pred             EEE
Q 014644          205 YSS  207 (421)
Q Consensus       205 s~~  207 (421)
                      ++.
T Consensus       163 ~~~  165 (326)
T PF13449_consen  163 AAM  165 (326)
T ss_pred             EEE
Confidence            554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.82  E-value=2.6  Score=24.13  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=24.0

Q ss_pred             CCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCc
Q 014644          257 NDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       257 ~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      |++++|.++. . ++|.++|..+ .+.+..+.....+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P   36 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP   36 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence            5778777654 3 8999999976 7777776654433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.51  E-value=13  Score=30.75  Aligned_cols=118  Identities=12%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             CEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC---C---eEEEE-ECCccc
Q 014644          151 ETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---G---FVRLV-DMRQSA  221 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---~---~v~iw-d~~~~~  221 (421)
                      +.|+.+ ..+.|.+|++.... +....+        .--+.|..+.++..| .+|++--.+   .   .+|+| +-+...
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--------~Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--------STVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--------cchhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhc
Confidence            455444 78889999998222 333332        123789999999999 999986533   2   56765 333221


Q ss_pred             ccccchh-hhccccccCCCccc-------cc-ccccceeEEEEcCCCCEEEEecCCeEEEEECCC
Q 014644          222 LCDHSAR-ILRDAAESHGSKSF-------FT-EIIASISDIKFANDGQHLLSRDYMNLKLWDIRM  277 (421)
Q Consensus       222 ~~~~~~~-~~~~h~~~~~~~~~-------~~-~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~  277 (421)
                      ......+ .+.+|...+.....       .. --...+.+++..|-..-|+.|+.+.+.||.+..
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~  164 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY  164 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence            1111111 11121111110000       00 013467788888854455555557899998863

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.38  E-value=17  Score=34.12  Aligned_cols=139  Identities=12%  Similarity=0.068  Sum_probs=85.1

Q ss_pred             CCCEEEE-ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--------CCEEEEeeCCCe
Q 014644          258 DGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--------GLHFATGSYSNL  327 (421)
Q Consensus       258 ~~~~l~~-~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--------~~~l~~~s~dg~  327 (421)
                      |..+|.. |.. ..++--|+.. |+.+..+..+...+                 +.|.|+        .+.|+.-|..+.
T Consensus       478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddvv-----------------Vqy~p~~kf~qmt~eqtlvGlS~~sv  539 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDVV-----------------VQYNPYFKFQQMTDEQTLVGLSDYSV  539 (776)
T ss_pred             CcceEEecCCCcccceeeeccc-ceeeeEeecCCcce-----------------eecCCchhHHhcCccceEEeecccce
Confidence            4445544 444 7778888886 89999998887643                 555553        345555555555


Q ss_pred             EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccc-cccccccCeEEEEEccC
Q 014644          328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHE-LSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~-~~~~~~~~v~~~~~spd  404 (421)
                      .+| |-+-.+..+...+ ..+....-.|+....   ...+++|.++..|. +++ ..+.... .+-+....|-.+..+.+
T Consensus       540 FrI-DPR~~gNKi~v~e-sKdY~tKn~Fss~~t---TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~  614 (776)
T COG5167         540 FRI-DPRARGNKIKVVE-SKDYKTKNKFSSGMT---TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN  614 (776)
T ss_pred             EEe-cccccCCceeeee-ehhcccccccccccc---ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence            554 4443323322222 223333333333211   12458999999999 999 3343333 33466788999999999


Q ss_pred             CCeEEEecCCceEEE
Q 014644          405 TNLIACANGNSLFFH  419 (421)
Q Consensus       405 ~~~la~~~~~~~~i~  419 (421)
                      |..|.+.+.+.|.+-
T Consensus       615 Gk~ilaTCk~yllL~  629 (776)
T COG5167         615 GKHILATCKNYLLLT  629 (776)
T ss_pred             CcEEEEeecceEEEE
Confidence            999999887776654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.38  E-value=21  Score=33.09  Aligned_cols=155  Identities=10%  Similarity=0.066  Sum_probs=80.6

Q ss_pred             eEEEeecCCCCEEEEEcCCcEE-EEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644          141 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                      ...+..++++.+++.+..|.+. -||--  ........      ......+.++.|.+++ ..+++ +.+|.+. +....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~~------~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~-~S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPHN------RASARRIQNMGWRADG-GLWLL-TRGGGLY-VSKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEec------CCCccceeeeeEcCCC-CEEEE-eCCceEE-EecCC
Confidence            4445667788888888555433 34332  11112211      2234568899999988 66654 4666654 33333


Q ss_pred             ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccccc
Q 014644          220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  299 (421)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      +....  ...+.. ...       ......+..+.|.+++..+++|..|.+....-  .++.-...........      
T Consensus       310 G~~~~--~~~f~~-~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~~------  371 (398)
T PLN00033        310 GLTEE--DFDFEE-ADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIAA------  371 (398)
T ss_pred             CCccc--ccceee-ccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCCc------
Confidence            32100  001111 000       00023588899999999999988776665542  2444333321111110      


Q ss_pred             CCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          300 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       300 ~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                            ..+.+.|.++++.+++| .+|.|.-|
T Consensus       372 ------~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        372 ------NLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             ------ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence                  11688888777666554 46776544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.00  E-value=21  Score=32.63  Aligned_cols=152  Identities=9%  Similarity=0.028  Sum_probs=78.8

Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe--c-CCCCeEEEEEcCCeEEEEECCc---ccccccchhhhcc
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRD  232 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p-~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~  232 (421)
                      .+|++|.+......+..+.-....+......++.+|+-  | ++..+++....+|.+..|.+..   +....+.++.|..
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            46889987632223332210000011112346777763  3 3423566677889988887752   2233334455554


Q ss_pred             ccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcce-eEEe-e-ccCcccccccccCCCcceeee
Q 014644          233 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFK-I-HEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~  308 (421)
                                    .+.+..+........|..+.+ .-|.-|+.+...... ..+. . .....            -++-
T Consensus       207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~------------aDvE  260 (381)
T PF02333_consen  207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV------------ADVE  260 (381)
T ss_dssp             --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EE
T ss_pred             --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc------------cCcc
Confidence                          457888888887778888865 667777776422221 1111 1 11111            1334


Q ss_pred             EEEEc--CCC-CEEEEee-CCCeEEEEecCCC
Q 014644          309 ECSVS--GDG-LHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       309 ~~~~s--p~~-~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      .+++-  +++ .||++.+ .+++..+|+.+..
T Consensus       261 Glaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  261 GLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            56553  343 3565555 4778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.98  E-value=0.071  Score=48.61  Aligned_cols=132  Identities=14%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-  267 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-  267 (421)
                      .....|-|.+ .-++.++.+..+..||-.. +...    ....              .+..-.++|.-++..++.. .. 
T Consensus        37 pi~~~w~~e~-~nlavaca~tiv~~YD~ag-q~~l----e~n~--------------tg~aldm~wDkegdvlavlAek~   96 (615)
T KOG2247|consen   37 PIIHRWRPEG-HNLAVACANTIVIYYDKAG-QVIL----ELNP--------------TGKALDMAWDKEGDVLAVLAEKT   96 (615)
T ss_pred             cceeeEecCC-CceehhhhhhHHHhhhhhc-ceec----ccCC--------------chhHhhhhhccccchhhhhhhcC
Confidence            3456788888 5688888888888888543 2111    1111              3456678888888877654 33 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.+.+||+.+.....-.+.+....                .=+.|++....++.|...|.+.|++..+. +.......|.
T Consensus        97 ~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~  159 (615)
T KOG2247|consen   97 GPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQ  159 (615)
T ss_pred             CCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhcccc
Confidence            899999997532221112221111                12589999889999999999999998876 3333333466


Q ss_pred             CCccceeeecC
Q 014644          348 NENRKPILQAA  358 (421)
Q Consensus       348 ~~~~~~~~~~~  358 (421)
                      -.+.+.++.+.
T Consensus       160 RRgtq~av~lE  170 (615)
T KOG2247|consen  160 RRGTQIAVTLE  170 (615)
T ss_pred             cceeEEEeccc
Confidence            66666666554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.67  E-value=8.1  Score=40.47  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=53.8

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeC----CCC---ceeeeeeecC-------C--CCCC-ccCCCeeEEEEecCCC
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNL----EIS---DQCFNIVDMK-------P--SNMD-DLTEVITSAEFHPIYC  200 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~----~~~---~~~~~~~~~~-------~--~~~~-~~~~~v~~~~~~p~~~  200 (421)
                      .-.|+++....+|+.+++|.||.  +|.+    ..+   .++.++...+       |  ..+. .+.++|..++....- 
T Consensus       178 g~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-  254 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-  254 (1311)
T ss_pred             CceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence            45688999888999999996664  4443    211   1111111000       0  1233 567899999998776 


Q ss_pred             CeEEEEEcCCeEEEEECCcc
Q 014644          201 NLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~  220 (421)
                      +.+++-+..++|++||+...
T Consensus       255 ~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             ceeeeeccCceEEEEEccCC
Confidence            88999999999999999873

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.34  E-value=4.7  Score=41.44  Aligned_cols=102  Identities=10%  Similarity=-0.030  Sum_probs=65.9

Q ss_pred             ceEEEeecCCCCE-EEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          140 NINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       140 ~v~~l~~~~~~~~-l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      -..++.|+|.-.. .+.. .|+.|++..+....+.+..        -......++++|+|.| +.++.|-..|++.-|-.
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence            3567788885332 3334 8999998887633332221        1245678999999999 99999999999988875


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      .-.. .    +.+..   .+...      ...|.+|.|-..-.++++
T Consensus       228 ~lei-k----~~ip~---Pp~~e------~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  228 SLEI-K----SEIPE---PPVEE------NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccce-e----ecccC---CCcCC------CcceeEEEEecceeEEEE
Confidence            4321 0    11111   11111      467999999987777775

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.13  E-value=8.8  Score=30.80  Aligned_cols=29  Identities=14%  Similarity=0.079  Sum_probs=23.2

Q ss_pred             eeEEEEcCCC------CEEEEeeCCCeEEEEecCC
Q 014644          307 KFECSVSGDG------LHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       307 ~~~~~~sp~~------~~l~~~s~dg~i~iwd~~~  335 (421)
                      +.+++|||.|      -+|++-+.+|.|.||.-..
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4789999943      3678888999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.50  E-value=2.4  Score=23.97  Aligned_cols=19  Identities=21%  Similarity=0.286  Sum_probs=14.8

Q ss_pred             cCeEEEEEccCCCeEEEec
Q 014644          394 SKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       394 ~~v~~~~~spd~~~la~~~  412 (421)
                      ..-...+|||||+.|+-.+
T Consensus         9 ~~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEE
T ss_pred             ccccCEEEecCCCEEEEEe
Confidence            4556889999999999777

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.47  E-value=17  Score=30.02  Aligned_cols=128  Identities=16%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             eEEEEcCCCCEEEEecCCeEEEEECCC-CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---
Q 014644          251 SDIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---  326 (421)
Q Consensus       251 ~~~~~s~~~~~l~~~~~~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---  326 (421)
                      ..+.-+..+.++++.+...|.+|++.. ..+++.++..-..                |..+.++..|.||++--.+.   
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~   84 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRS   84 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCc
Confidence            334444323343444447899999973 2445555543322                26899999999999865422   


Q ss_pred             ---eEEEE---ecCC-C-CCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCC-CccccccccccCeE
Q 014644          327 ---LLRIF---SHGV-G-SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS-GHHELSYNLSSKLL  397 (421)
Q Consensus       327 ---~i~iw---d~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~-~~~~~~~~~~~~v~  397 (421)
                         .+|+|   .... . ......+-||...                      ++..    .... .....-.....++.
T Consensus        85 ~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~----------------------~~~~----~~~~~qleiiElPl~~~p~  138 (215)
T PF14761_consen   85 PVDFVRAYFNWRSQKEENSPVRVRIAGHRVT----------------------PSFN----ESSKDQLEIIELPLSEPPL  138 (215)
T ss_pred             cceEEEEEEEhhhhcccCCcEEEEEcccccc----------------------cCCC----CccccceEEEEecCCCCCC
Confidence               45553   3221 1 1112222233110                      0000    0000 01111224467788


Q ss_pred             EEEEccCCCeEEEecCCceEEEe
Q 014644          398 HLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       398 ~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +++-.|-.--|++|+.+.+.+|.
T Consensus       139 ciaCC~~tG~LlVg~~~~l~lf~  161 (215)
T PF14761_consen  139 CIACCPVTGNLLVGCGNKLVLFT  161 (215)
T ss_pred             EEEecCCCCCEEEEcCCEEEEEE
Confidence            99999998888999999999985

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.16  E-value=18  Score=34.04  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc
Q 014644          154 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  232 (421)
Q Consensus       154 ~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  232 (421)
                      +.| .+..|.--|.+..+..+.....+.   ......-.|..-..+  .+++.++..|-|++||--..+..    ..   
T Consensus       531 lvGlS~~svFrIDPR~~gNKi~v~esKd---Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----ta---  598 (776)
T COG5167         531 LVGLSDYSVFRIDPRARGNKIKVVESKD---YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TA---  598 (776)
T ss_pred             EEeecccceEEecccccCCceeeeeehh---ccccccccccccccC--ceEEEecCCCceeeehhhcchhh----hc---
Confidence            345 777776677775554444332211   111122233333333  58999999999999995442211    11   


Q ss_pred             ccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECC
Q 014644          233 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR  276 (421)
Q Consensus       233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~  276 (421)
                                +++....|..+..+.+|+++++.+...+.+-|++
T Consensus       599 ----------lP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         599 ----------LPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             ----------CcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence                      2223568899999999999988777788888875

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.07  E-value=5.8  Score=31.83  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             CeeEEEEecCC-----CCeEEEEEcCCeEEEEECCc
Q 014644          189 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       189 ~v~~~~~~p~~-----~~~l~s~~~d~~v~iwd~~~  219 (421)
                      .+.+++|||.|     ..+|++.+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999965     24788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.94  E-value=1.4  Score=43.88  Aligned_cols=151  Identities=12%  Similarity=0.051  Sum_probs=82.1

Q ss_pred             cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc--ccccccchhhhcccc
Q 014644          157 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAA  234 (421)
Q Consensus       157 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~h~  234 (421)
                      ..+.+++-+..+..+...+       +++..+.+..+.|-......+.  -.-|.+.+||+..  |+..    ..+..|.
T Consensus       109 ~~~~vrvaN~~~sm~~~~l-------~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq----~~l~v~~  175 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNEL-------AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ----PQLEVTP  175 (1283)
T ss_pred             hhhhhhhccCcchhHHHHH-------HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc----cceEEee
Confidence            4566777776633321111       1566677777777543322222  3346788998764  2221    1122211


Q ss_pred             ccCCCcccccccccceeEEEEcC---CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEE
Q 014644          235 ESHGSKSFFTEIIASISDIKFAN---DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFEC  310 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      ..+.        ...+.-+.|.|   +.-++..+.+ +.+++..+.+  .....+++|...+...+.+ +.+.+   .=-
T Consensus       176 ~~p~--------gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~-~~g~~---~l~  241 (1283)
T KOG1916|consen  176 ITPY--------GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFF-AEGVL---KLA  241 (1283)
T ss_pred             cCcC--------CCCcceeeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHH-hhchh---hhe
Confidence            1111        22334555554   5666667755 8888877754  2224555666554332211 11111   012


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEecC
Q 014644          311 SVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       311 ~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ..||||..++..+.||.++.|.+.
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeee
Confidence            489999999999999999888765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.84  E-value=25  Score=31.20  Aligned_cols=189  Identities=15%  Similarity=0.082  Sum_probs=89.6

Q ss_pred             CCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          148 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       148 ~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      .++..++++..|.|  |.....++..+.+.      .+-.+.+..+.-+++| .++++++......-||--.        
T Consensus       113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~~~------~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--------  175 (302)
T PF14870_consen  113 GDGSAELAGDRGAI--YRTTDGGKTWQAVV------SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--------  175 (302)
T ss_dssp             ETTEEEEEETT--E--EEESSTTSSEEEEE-------S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred             CCCcEEEEcCCCcE--EEeCCCCCCeeEcc------cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence            33444444444443  33332454444331      3334678888889999 8777776666666777543        


Q ss_pred             hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceee
Q 014644          228 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK  307 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
                      ..+..|...         -...|..+.|.|++.+.+.+..|.|+.=+...   ....+..+....        ...-+.+
T Consensus       176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~---~~~~w~~~~~~~--------~~~~~~~  235 (302)
T PF14870_consen  176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD---DGETWSEPIIPI--------KTNGYGI  235 (302)
T ss_dssp             SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT---EEEEE---B-TT--------SS--S-E
T ss_pred             ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCCC---CccccccccCCc--------ccCceee
Confidence            233333111         14579999999999887777668888887221   122222211110        0011123


Q ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccc
Q 014644          308 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHE  387 (421)
Q Consensus       308 ~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~  387 (421)
                      .+++|.+++...++|+ .|.+. ...+.+ +.               |..++.                           
T Consensus       236 ld~a~~~~~~~wa~gg-~G~l~-~S~DgG-kt---------------W~~~~~---------------------------  270 (302)
T PF14870_consen  236 LDLAYRPPNEIWAVGG-SGTLL-VSTDGG-KT---------------WQKDRV---------------------------  270 (302)
T ss_dssp             EEEEESSSS-EEEEES-TT-EE-EESSTT-SS----------------EE-GG---------------------------
T ss_pred             EEEEecCCCCEEEEeC-CccEE-EeCCCC-cc---------------ceECcc---------------------------
Confidence            7899999887777665 45443 233333 11               111100                           


Q ss_pred             cccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          388 LSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       388 ~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                       .......+..+.|.++.+-+|.|.++.|.=|
T Consensus       271 -~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  271 -GENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -GTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             -ccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence             0011345678888888888888888877655

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.72  E-value=14  Score=36.59  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             CCCEEEEE-cCCcEEEEeCCC-------C----ceeeeeeecCCCCCCccCCCeeEEEEe--cCCCCeEEEEEcCCeEEE
Q 014644          149 DCETFVSA-DDLRINLWNLEI-------S----DQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~d~~v~i  214 (421)
                      +.+.|+.+ +||.|.+|.++.       .    ........++|.-...-...+++++++  ... ++||.++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence            55677778 999999997631       0    000000112221112234578999998  665 78888888888888


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-----C-EEEEecC-CeEEEEEC
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKLWDI  275 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~~~~~-~~i~i~d~  275 (421)
                      |-+...........   .           ..+...|.+|+|-++.     . .+++++- |.+.+|++
T Consensus       192 Faf~l~~~r~~~~~---s-----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVP---S-----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecccccccccc---c-----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            76554211000000   0           0135578899997753     2 4555554 88888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.14  E-value=16  Score=38.48  Aligned_cols=85  Identities=13%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCeEEEEECC--CC-C---cceeEEeecc----Cccccccc--ccCCCcceeeeEEEEcC
Q 014644          247 IASISDIKFANDGQHLLSRDYMNLKLWDIR--MD-S---TPVATFKIHE----HLRPKLCD--LYNNDSIFDKFECSVSG  314 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~--~~-~---~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~sp  314 (421)
                      ...|+++....+|+.+++|.+|  .+|.+.  .. +   +....+....    ..++.+..  ..+.+.|   ..+....
T Consensus       178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI---~qi~ID~  252 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI---RQITIDN  252 (1311)
T ss_pred             CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc---eeeEecc
Confidence            3578899988899999999887  445442  10 1   1000010000    00111111  1223344   6888888


Q ss_pred             CCCEEEEeeCCCeEEEEecCCC
Q 014644          315 DGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ..+.+.+-++.|+|.+|++...
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             ccceeeeeccCceEEEEEccCC
Confidence            8888999999999999999873

>PRK13684 Ycf48-like protein; Provisional

Probab=84.25  E-value=32  Score=31.13  Aligned_cols=149  Identities=7%  Similarity=-0.042  Sum_probs=77.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644          247 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  326 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg  326 (421)
                      ...+..+.+.|++.+++++..|.+..- .+..++.-.........              .+.++.+.|+++.+++| ..|
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~--------------~l~~i~~~~~g~~~~vg-~~G  235 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSR--------------RLQSMGFQPDGNLWMLA-RGG  235 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcc--------------cceeeeEcCCCCEEEEe-cCC
Confidence            356889999999988888877655432 11112222222221111              12688999999877665 457


Q ss_pred             eEEEEecCCCCCceeEEec----CCCCccceeeecCCcccccccceeeeecccCcccC--CCCCccccc---cccccCeE
Q 014644          327 LLRIFSHGVGSAGGITVEA----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHELS---YNLSSKLL  397 (421)
Q Consensus       327 ~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~~~~~~~~~---~~~~~~v~  397 (421)
                      .+++=..+.+ ..-.....    ....+..+.+.+.  +.     .++ .+.+|..+.  +.++.-...   ........
T Consensus       236 ~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~--~~-----~~~-~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~  306 (334)
T PRK13684        236 QIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTP--GE-----IWA-GGGNGTLLVSKDGGKTWEKDPVGEEVPSNFY  306 (334)
T ss_pred             EEEEccCCCC-CccccccCCccccccceeeEEEcCC--CC-----EEE-EcCCCeEEEeCCCCCCCeECCcCCCCCcceE
Confidence            6653222322 11111111    1122344555544  22     333 333443222  111111111   12234678


Q ss_pred             EEEEccCCCeEEEecCCceEEEe
Q 014644          398 HLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       398 ~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .+.|..+++.+++|..+.|.-|+
T Consensus       307 ~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        307 KIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EEEEeCCCceEEECCCceEEEec
Confidence            88999889999999888887664

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.63  E-value=32  Score=32.58  Aligned_cols=83  Identities=8%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCC--------Ccee---eeeeecCCCCCC-ccCCCeeEEEEecCC--CCeE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEI--------SDQC---FNIVDMKPSNMD-DLTEVITSAEFHPIY--CNLL  203 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~--------~~~~---~~~~~~~~~~~~-~~~~~v~~~~~~p~~--~~~l  203 (421)
                      -.|..+..++.|..++-+ .+|.+.++=.+.        .++.   -+++.+...-+. ...-.+..++|+|+.  ...|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            357777788888877765 777655443110        1111   111111111111 112346678999986  4677


Q ss_pred             EEEEcCCeEEEEECCccc
Q 014644          204 AYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~~~  221 (421)
                      +.-+.|..+|+||+...+
T Consensus       184 ~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEecCcEEEEEecCCcc
Confidence            788899999999998754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.22  E-value=11  Score=34.81  Aligned_cols=160  Identities=11%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             cccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee-EEEEcCCCCEEEEeeC
Q 014644          246 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSY  324 (421)
Q Consensus       246 ~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~~l~~~s~  324 (421)
                      ....+..+-..|||+.+..-+..++.++++.+..-...++......          |..-.|+ .+..-..|.-+..++.
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg----------~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG----------DSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC----------chHHHHHHHHHHHhCceeEEEEcC
Confidence            3567888899999999887766789999987522222222111000          0000001 1112235666888899


Q ss_pred             CCeEEEE-ecCCCCCc-eeEEecCC-CCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccccccccccCeEEE
Q 014644          325 SNLLRIF-SHGVGSAG-GITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHL  399 (421)
Q Consensus       325 dg~i~iw-d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~  399 (421)
                      ||.|.-| |++.+... ....+..+ .+...-...|+...+     -+++-+..|. ..+ +..+...-....-..+..+
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-----gF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~  363 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-----GFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLV  363 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccc-----eEEEEcCCCceeeeecccCcceehhhhhcCccee
Confidence            9988776 55443221 11111111 111111222332222     4555556666 444 2222222111222356678


Q ss_pred             EEccCCCeEEEecCCceEEEe
Q 014644          400 AWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       400 ~~spd~~~la~~~~~~~~i~~  420 (421)
                      ++||.+.+|++-..+++.++.
T Consensus       364 ~~Sp~~~~Ll~e~~gki~~~~  384 (733)
T COG4590         364 AMSPNQAYLLSEDQGKIRLAQ  384 (733)
T ss_pred             eeCcccchheeecCCceEEEE
Confidence            999999999999888888875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.57  E-value=0.28  Score=44.93  Aligned_cols=149  Identities=11%  Similarity=0.032  Sum_probs=93.1

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      +-.......|-|.+.-++.+ .+..+..||-.  ++..--        -..+.....++|.-+++..++.+...+.+.+|
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le--------~n~tg~aldm~wDkegdvlavlAek~~piylw  102 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILE--------LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLW  102 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh--cceecc--------cCCchhHhhhhhccccchhhhhhhcCCCeeec
Confidence            33334456677776667776 88899999976  333211        12345567788888886777778888999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      |+.+...     ..++.            +....-.-+.|++.+..++.+.. +.+.|++..+ .+.....-.|....  
T Consensus       103 d~n~eyt-----qqLE~------------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRg--  162 (615)
T KOG2247|consen  103 DVNSEYT-----QQLES------------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRG--  162 (615)
T ss_pred             hhhhhhH-----HHHhc------------cCcchHHHHhhccCCccccccccccceEEEeccc-hhhhhhhcccccce--
Confidence            9987431     11211            00122233789998888888876 9999999876 33222222233322  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEE
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  329 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~  329 (421)
                                   +..++.+.+.. +.++.|..+.
T Consensus       163 -------------tq~av~lEd~v-il~dcd~~L~  183 (615)
T KOG2247|consen  163 -------------TQIAVTLEDYV-ILCDCDNTLS  183 (615)
T ss_pred             -------------eEEEeccccee-eecCcHHHHH
Confidence                         57888887654 4455554443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.56  E-value=6.6  Score=22.05  Aligned_cols=28  Identities=7%  Similarity=-0.019  Sum_probs=19.4

Q ss_pred             CCcceEEEeecCCCCEEEEE--cC--CcEEEE
Q 014644          137 HDFNINSISNNSDCETFVSA--DD--LRINLW  164 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~--~d--~~i~lw  164 (421)
                      ....-....|+|||+.|+-+  .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44456788999999988874  55  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.63  E-value=52  Score=31.67  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=18.3

Q ss_pred             CCeEEEEeCCCcEEEeecCCcee
Q 014644           47 GSMFILSTNDKTIKLWKVRDQKV   69 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~~   69 (421)
                      +..+..++.++.|.-.|..+++.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~   83 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKV   83 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChh
Confidence            45667778889999999988873

The alignment model contains an 8-bladed beta-propeller.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.52  E-value=41  Score=31.76  Aligned_cols=30  Identities=7%  Similarity=-0.036  Sum_probs=24.7

Q ss_pred             cceeEEEEcCCCCEEEEecC-CeEEEEECCC
Q 014644          248 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM  277 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~  277 (421)
                      .....|+|.|||++|++-.. |.|++++...
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~   60 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPET   60 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence            45689999999999998874 9999998643

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK10115 protease 2; Provisional

Probab=81.02  E-value=66  Score=32.52  Aligned_cols=112  Identities=14%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             cceEEEeecCCCCEEEEE-c-C----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC---
Q 014644          139 FNINSISNNSDCETFVSA-D-D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---  209 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~-d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---  209 (421)
                      -.+..+.++|||++|+.+ + +    ..|++-|+.+ +..+..      .+.   ..-..++|.+|+ ..|+....+   
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~------~i~---~~~~~~~w~~D~-~~~~y~~~~~~~  195 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPE------LLD---NVEPSFVWANDS-WTFYYVRKHPVT  195 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCc------ccc---CcceEEEEeeCC-CEEEEEEecCCC
Confidence            346778899999999986 3 2    3577888873 332110      111   112568999998 555554432   


Q ss_pred             ---CeEEEEECCcccccccchhhhccccccCCCccccccccccee-EEEEcCCCCEEEEe--c-C-CeEEEEECC
Q 014644          210 ---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR--D-Y-MNLKLWDIR  276 (421)
Q Consensus       210 ---~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~--~-~-~~i~i~d~~  276 (421)
                         ..|..+++.++...+  ..++..             ...... .+..+.++++++..  + . +.+.+++..
T Consensus       196 ~~~~~v~~h~lgt~~~~d--~lv~~e-------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQD--ELVYEE-------------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCCEEEEEECCCChhHC--eEEEee-------------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence               256666776652111  122222             012222 33344488877643  2 2 678888854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	421
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-92

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/414 (44%), Positives = 255/414 (61%), Gaps = 37/414 (8%)
Query: 5   STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 64
           S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+LSTNDKTIKLWK 
Sbjct: 65  SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK- 123
Query: 65  RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 124
                  I E D  P    E   L E++    +  P+      +     M          
Sbjct: 124 -------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVFRPMDLM------- 163
Query: 125 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 184
           V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct: 164 VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223
Query: 185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 244
           +LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  +  E   ++SFF+
Sbjct: 224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFS 282
Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
           EII+SISD+KF++ G+++++RDY+++K+WD+ M++ PV T+++HE+LR KLC LY ND I
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342
Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 364
           FDKFEC  +G      TGSY+N  R+F     +   IT+EA + EN KP     PR   +
Sbjct: 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDR--NTKRDITLEASR-ENNKPRTVLKPRKVCA 399
Query: 365 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 418
           S         R+  E S       S + + K+LH AWHP  N+IA A  N+L+ 
Sbjct: 400 SGK-------RKKDEISVD-----SLDFNKKILHTAWHPKENIIAVATTNNLYI 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.45
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.36
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.34
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.32
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.21
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.02
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.81
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.7
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.66
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.62
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.57
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.57
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.55
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.52
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.31
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.31
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.14
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.68
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.67
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.57
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.51
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.43
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.32
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.28
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.12
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.07
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.93
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.9
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.64
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.51
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.38
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.81
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.7
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.62
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.28
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.87
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.81
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.27
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.97
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.64
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.86
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.25
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.91
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	81.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	81.25

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.4e-44  Score=348.77  Aligned_cols=372  Identities=14%  Similarity=0.129  Sum_probs=267.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCccccccccccccee--------------
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFM--------------   94 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--------------   94 (421)
                      .+|.+.|++++|  +|++++||+|+.|++|+|||+.+++ ........+.++|.+++|.+....+.              
T Consensus        56 ~~h~~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           56 TEHSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             cCCCCceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            489999999999  7999999999999999999997544 22222334677888888887654433              


Q ss_pred             ------------------eccCCCCce-eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE
Q 014644           95 ------------------NEHNPPSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  155 (421)
Q Consensus        95 ------------------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  155 (421)
                                        ++.++++.. .+++++.  ++.+++|+....   +++..+ .+|...|++++|+|++++|++
T Consensus       134 wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~--D~~v~lwd~~~~---~~~~~l-~~H~~~V~~v~fspdg~~las  207 (611)
T 1nr0_A          134 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD--DNTVAIFEGPPF---KFKSTF-GEHTKFVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET--TSCEEEEETTTB---EEEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             eeCCCCcceecCCCCCceEEEECCCCCeEEEEEeC--CCeEEEEECCCC---eEeeee-ccccCceEEEEECCCCCEEEE
Confidence                              233333333 2444443  568999998766   778888 899999999999999999999


Q ss_pred             E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch-------
Q 014644          156 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-------  227 (421)
Q Consensus       156 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-------  227 (421)
                      + .|++|++||+. .++....+........+|.+.|.+++|+|++ .+|++++.|++|++||+++++......       
T Consensus       208 ~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          208 TGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EETTSCEEEEETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EECCCcEEEEECC-CCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            9 99999999998 4555544311111123799999999999999 999999999999999998865431110       


Q ss_pred             ---------------------hhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          228 ---------------------RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       228 ---------------------~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                                           +.++.  ........+.+|...|.+++|+|+|++|++++. +.|++||+.+ ++....+
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~--~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~  362 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNP--ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVF  362 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEET--TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECS
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeC--CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cceeeec
Confidence                                 00000  000011234678999999999999999999876 9999999975 4432221


Q ss_pred             -eeccCccccccc------------------------------------------ccCCC--------------------
Q 014644          286 -KIHEHLRPKLCD------------------------------------------LYNND--------------------  302 (421)
Q Consensus       286 -~~~~~~~~~~~~------------------------------------------~~~~~--------------------  302 (421)
                       .+|...+..+..                                          .+..+                    
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence             111111000000                                          00000                    


Q ss_pred             ----cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-
Q 014644          303 ----SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-  377 (421)
Q Consensus       303 ----~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-  377 (421)
                          .-..+.+++|+|||++|++|+.|+.|++||+.++........+|...+.+++|+|+  ++     +|++++.|+. 
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd--g~-----~las~s~d~~v  515 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN--GA-----FLVATDQSRKV  515 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT--SS-----EEEEEETTSCE
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCC--CC-----EEEEEcCCCCE
Confidence                00124689999999999999999999999998653222233789999999999999  44     8999999999 


Q ss_pred             ccCCCC---Ccccc-cc-ccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          378 HENSSS---GHHEL-SY-NLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       378 ~iw~~~---~~~~~-~~-~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ++|+..   +.... .. .|...|.+++|+||+++||+|+ ++.+++|+.
T Consensus       516 ~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             EEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence            999432   22222 22 4899999999999999999999 566999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=318.26  Aligned_cols=284  Identities=16%  Similarity=0.179  Sum_probs=239.8

Q ss_pred             cccccccEEEEEEEEc--CCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           29 SLEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~--~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ..+|.+.|.+++|.+.  +++.+|++|+.|++|+|||+.++..                                     
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------------------   70 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------------------   70 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------------------
Confidence            3589999999999543  2477999999999999999876441                                     


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                           .+...+ .+|...|.+++|++++.+++++ .|++|++||+. .++.+..+       ..
T Consensus        71 ---------------------~~~~~l-~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~~~~~~~-------~~  120 (321)
T 3ow8_A           71 ---------------------DLQWSL-EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQIKSI-------DA  120 (321)
T ss_dssp             ---------------------EEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEE-------EC
T ss_pred             ---------------------eeeeee-ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CCCEEEEE-------eC
Confidence                                 222334 7999999999999999999999 99999999998 55555554       56


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...+.+++|+|++ ++|++++.|+.|++||++.++..    ..+..             +...+.+++|+|+|++|+++
T Consensus       121 ~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~~~~-------------~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          121 GPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YSLDT-------------RGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             CTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EEEEC-------------SSSCEEEEEECTTSSEEEEE
T ss_pred             CCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EEecC-------------CCceEEEEEECCCCCEEEEE
Confidence            77889999999999 99999999999999999886533    22222             36689999999999999998


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. +.|++||+++ ++.+..+.+|...+               .+++|+|++++|++|+.||.|++||++++ .....+.
T Consensus       183 ~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~  245 (321)
T 3ow8_A          183 AIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLS  245 (321)
T ss_dssp             ETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEEC
T ss_pred             cCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEc
Confidence            76 9999999986 88888898888765               79999999999999999999999999987 6678899


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +|...+..++|+|+       ...|++++.|+. ++|+  .+..+....+|...|.+++|+|+++.|++++ ++.+++|+
T Consensus       246 ~h~~~v~~~~~sp~-------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          246 GHASWVLNVAFCPD-------DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             CCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCceEEEEECCC-------CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            99999999999998       338999999999 9993  4455666778999999999999999999998 55699997


Q ss_pred             C
Q 014644          421 A  421 (421)
Q Consensus       421 ~  421 (421)
                      .
T Consensus       319 ~  319 (321)
T 3ow8_A          319 C  319 (321)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-43  Score=327.69  Aligned_cols=279  Identities=14%  Similarity=0.233  Sum_probs=242.4

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|..+|++++|  +|++.+|++|+.|++|+|||+.+++                                         
T Consensus       105 ~gh~~~V~~~~~--~p~~~~l~s~s~Dg~i~vwd~~~~~-----------------------------------------  141 (410)
T 1vyh_C          105 SGHRSPVTRVIF--HPVFSVMVSASEDATIKVWDYETGD-----------------------------------------  141 (410)
T ss_dssp             ECCSSCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCC-----------------------------------------
T ss_pred             cccCCcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----------------------------------------
Confidence            489999999999  7899999999999999999998754                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +.+.+ .+|.+.|.+++|+|++++|++| .|++|++||+. ..+++..       +.+|..
T Consensus       142 -------------------~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~~~~-------~~~h~~  193 (410)
T 1vyh_C          142 -------------------FERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECIRT-------MHGHDH  193 (410)
T ss_dssp             -------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCEEEC-------CCCCSS
T ss_pred             -------------------EEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEE-------EcCCCC
Confidence                               22334 7899999999999999999999 99999999998 5555543       478999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+|++ .+|++++.|++|++||++++...    ..+..             |...|.++.++|++.+|++++. 
T Consensus       194 ~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~g~~l~s~s~D  255 (410)
T 1vyh_C          194 NVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFTG-------------HREWVRMVRPNQDGTLIASCSND  255 (410)
T ss_dssp             CEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEeC-------------CCccEEEEEECCCCCEEEEEcCC
Confidence            99999999999 99999999999999999987543    33444             4788999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC--------------------CCEEEEeeCCCe
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--------------------GLHFATGSYSNL  327 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--------------------~~~l~~~s~dg~  327 (421)
                      +.|++||+++ ++....+.+|...+               .+++|+|+                    +.+|++|+.|+.
T Consensus       256 ~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          256 QTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             CeEEEEECCC-CceeeEecCCCceE---------------EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            9999999986 78888888888765               78999986                    678999999999


Q ss_pred             EEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccC
Q 014644          328 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       328 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd  404 (421)
                      |++||+.++ .....+.+|...+..+.|+|+  +     .+|++|+.|+. ++|+  .++.+....+|...|++++|+|+
T Consensus       320 i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~--g-----~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  391 (410)
T 1vyh_C          320 IKMWDVSTG-MCLMTLVGHDNWVRGVLFHSG--G-----KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT  391 (410)
T ss_dssp             EEEEETTTT-EEEEEEECCSSCEEEEEECSS--S-----SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred             EEEEECCCC-ceEEEEECCCCcEEEEEEcCC--C-----CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence            999999987 677889999999999999988  3     38999999999 9993  44556667789999999999999


Q ss_pred             CCeEEEec-CCceEEEeC
Q 014644          405 TNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       405 ~~~la~~~-~~~~~i~~~  421 (421)
                      +++||+|+ ++.|++|+.
T Consensus       392 ~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          392 APYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEETTSEEEEEC-
T ss_pred             CCEEEEEeCCCcEEEEeC
Confidence            99999999 566999973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.3e-42  Score=306.53  Aligned_cols=279  Identities=15%  Similarity=0.135  Sum_probs=231.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.+.|++++|  +|++.+|++++.||+|+|||++++.                                          
T Consensus        11 ~h~~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~------------------------------------------   46 (304)
T 2ynn_A           11 NRSDRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQV------------------------------------------   46 (304)
T ss_dssp             EECSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTE------------------------------------------
T ss_pred             CCCCceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCc------------------------------------------
Confidence            68999999999  7999999999999999999998754                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        +++.+ ..|...|.+++|+|++++|++| .|++|++||+. .++.+..+       .+|...
T Consensus        47 ------------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~-------~~h~~~   99 (304)
T 2ynn_A           47 ------------------EVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDF-------EAHPDY   99 (304)
T ss_dssp             ------------------EEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSSC
T ss_pred             ------------------eeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CCcEEEEE-------eCCCCc
Confidence                              22334 6788899999999999999999 99999999998 45555444       789999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-  267 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-  267 (421)
                      |.+++|+|++ .+|++++.|++|++||++++...   ...+.             +|...|.+++|+| ++.+|++++. 
T Consensus       100 v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~~~-------------~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A          100 IRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTFE-------------GHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             EEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEEEC-------------CCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             EEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhhhc-------------ccCCcEEEEEECCCCCCEEEEEeCC
Confidence            9999999999 99999999999999999875322   12333             3588999999999 6788998875 


Q ss_pred             CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          268 MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +.|++||++. ..+...+. ++...+               ..++|+|  ++++|++|+.|+.|++||++++ .....+.
T Consensus       163 ~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~  225 (304)
T 2ynn_A          163 RTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLE  225 (304)
T ss_dssp             SEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             CeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeC
Confidence            9999999986 55444443 333322               5677776  7889999999999999999987 7788999


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCC--eEEEecCCceEEE
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTN--LIACANGNSLFFH  419 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~--~la~~~~~~~~i~  419 (421)
                      +|...+..++|+|+       ...|++|+.|+. ++|+  ..+.......+...+.+++|+|++.  +||+|+++++.+|
T Consensus       226 ~h~~~v~~~~~~p~-------~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          226 GHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL  298 (304)
T ss_dssp             CCSSCEEEEEECSS-------SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred             CCCCCEEEEEECCC-------CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence            99999999999998       348999999999 9993  3455556667788999999999985  5899999999988


Q ss_pred             eC
Q 014644          420 YA  421 (421)
Q Consensus       420 ~~  421 (421)
                      ..
T Consensus       299 ~~  300 (304)
T 2ynn_A          299 SL  300 (304)
T ss_dssp             EC
T ss_pred             Ee
Confidence            63

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=319.66  Aligned_cols=373  Identities=39%  Similarity=0.677  Sum_probs=270.3

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee---------EEeeec-CCCCCcccccccccccceeeccC
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---------KKIKEM-DHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      .+.|.+.|++++|  +|++++||+|+.||.|+|||+.+++.         ...... .|..+...+........+.++.+
T Consensus        24 ~~~~~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           24 DVAEADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CCCGGGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccccCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            3567899999999  78999999999999999999987651         111111 23210000000000134555555


Q ss_pred             CCCc--eeeeecccccccceeEEeecccce------------------------------------eeeeeeecCCCCcc
Q 014644           99 PPSF--AHGYHLEWTENMATKIANVGNSVH------------------------------------ARCQKVYPHAHDFN  140 (421)
Q Consensus        99 ~~~~--~~~~~g~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~h~~~  140 (421)
                      .++.  ..+..++.  ++.+++|++.....                                    ..+.+.+..+|...
T Consensus       102 ~~~~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          102 LPQKNAAQFLLSTN--DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CCCCSSSEEEEEEC--SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             cCCCCcceEEEeCC--CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            5554  45555544  67899999876321                                    12233444789999


Q ss_pred             eEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          141 INSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      |.+++|+|++++|++|.|++|++||++..++.+..+..++..+.+|...|.+++|+|+++.+|++++.||.|++||++++
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            99999999999999999999999999855667776666666778999999999999997689999999999999999987


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccC
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN  300 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      .........+..| ..+.....+..|...|.+++|+|+|++|++++++.|++||+++.++++..+.+|......++..++
T Consensus       260 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          260 ALCDRHSKLFEEP-EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSSCTTCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             ccccceeeEeccC-CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccccc
Confidence            7533333455553 223334445556679999999999999999877999999998658888899999877766666777


Q ss_pred             CCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644          301 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  380 (421)
Q Consensus       301 ~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw  380 (421)
                      .++++++..++|+|++++|++|+.||.|++||+.++  ....+.++..+.......+.+        .+..++....   
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---  405 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK--RDITLEASRENNKPRTVLKPR--------KVCASGKRKK---  405 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC--CEEEEECCSTTCCTTCBCCCC--------CEECSSCCCT---
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC--cceeeeecccccccccccCCc--------cccccCCccc---
Confidence            788877778999999999999999999999999976  334677777665544433321        2222222211   


Q ss_pred             CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          381 SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       381 ~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                        .+......++...|..++|||++++||+++.+++++|++
T Consensus       406 --~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          406 --DEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             --TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             --ccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence              122233446678899999999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-41  Score=307.81  Aligned_cols=281  Identities=14%  Similarity=0.136  Sum_probs=233.1

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  ++++++|++|+.||+|++||+.+++                                         
T Consensus        52 ~gH~~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~-----------------------------------------   88 (340)
T 1got_B           52 RGHLAKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTN-----------------------------------------   88 (340)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCC-----------------------------------------
T ss_pred             cCCCCceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCC-----------------------------------------
Confidence            379999999999  7999999999999999999987754                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         ++..+ ..|...|.+++|+|++++|+++ .|+.|++|++..........    ..+.+|..
T Consensus        89 -------------------~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~  144 (340)
T 1got_B           89 -------------------KVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS----RELAGHTG  144 (340)
T ss_dssp             -------------------EEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE----EEEECCSS
T ss_pred             -------------------cceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE----EEecCCCc
Confidence                               12223 5788899999999999999999 99999999998443222211    12378999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.++.|++++  .+++++.|++|++||+++++..    ..+..             |...|.+++|+|+++++++++. 
T Consensus       145 ~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          145 YLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----TTFTG-------------HTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             CEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----EEEcC-------------CCCceEEEEECCCCCEEEEEeCC
Confidence            99999999986  4889999999999999987543    33334             4789999999999999999875 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe--c
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--A  345 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~  345 (421)
                      +.|++||+++ +.....+.+|...+               .+++|+|++++|++|+.||.|++||++++ .....+.  .
T Consensus       206 ~~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~  268 (340)
T 1got_B          206 ASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDN  268 (340)
T ss_dssp             SCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred             CcEEEEECCC-CeeEEEEcCCcCCE---------------EEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCC
Confidence            9999999986 88888888888755               79999999999999999999999999976 3333333  2


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +...+..++|+|+  +     .+|++|+.|+. ++|+  .........+|...|.+++|+|++.+||+|+ ++.|+||+
T Consensus       269 ~~~~v~~~~~s~~--g-----~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          269 IICGITSVSFSKS--G-----RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSCEEEEEECTT--S-----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccceEEEEECCC--C-----CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            3347889999998  3     48999999999 9993  4455566778999999999999999999999 55699996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.2e-41  Score=327.77  Aligned_cols=345  Identities=14%  Similarity=0.098  Sum_probs=255.9

Q ss_pred             ccccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...|++++|  +|++. .|++|+.|++|++||..+++..... ..|..            .+.++.+++++.+++++
T Consensus       144 ~gh~~~v~~v~f--~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~------------~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          144 TGQARAMNSVDF--KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTK------------FVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             CCCSSCEEEEEE--CSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSS------------CEEEEEECTTSSEEEEE
T ss_pred             cCCCCCceEEEE--CCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccC------------ceEEEEECCCCCEEEEE
Confidence            479999999999  68876 6999999999999998877633222 22444            45566666777777777


Q ss_pred             ccccccceeEEeecccceeeeeeeecC------CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC--
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPH------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--  179 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--  179 (421)
                      +.  ++.+++|+..++   +++..+..      +|.+.|.+++|+|++++|+++ .|++|++||+. .+++...+...  
T Consensus       209 s~--D~~i~lwd~~~g---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~-~~~~~~~~~~~~~  282 (611)
T 1nr0_A          209 GG--DGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-TLKVEKTIPVGTR  282 (611)
T ss_dssp             ET--TSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSS
T ss_pred             EC--CCcEEEEECCCC---cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC-CCceeeeecCCCC
Confidence            76  678999998876   55555522      799999999999999999999 99999999998 44444332110  


Q ss_pred             ----------------------------------CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc
Q 014644          180 ----------------------------------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  225 (421)
Q Consensus       180 ----------------------------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~  225 (421)
                                                        ...+.+|...|.+++|+|++ ++|++++.|++|++||+.++.....
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeee
Confidence                                              01235799999999999999 9999999999999999987643210


Q ss_pred             c---------------------------hhhhcccc---------------------ccCCCcc----------------
Q 014644          226 S---------------------------ARILRDAA---------------------ESHGSKS----------------  241 (421)
Q Consensus       226 ~---------------------------~~~~~~h~---------------------~~~~~~~----------------  241 (421)
                      .                           ++.+....                     ..+....                
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            0                           00010000                     0000000                


Q ss_pred             -cccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          242 -FFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       242 -~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                       ....|...+.+++|+|||++|++|+. ++|++||+.. +..  +.. .+|...+               .+++|+|+|+
T Consensus       442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~-~~~~~~~~-~~h~~~v---------------~~v~fspdg~  504 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVSEVKT-IVHPAEI---------------TSVAFSNNGA  504 (611)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEEEEEE-EECSSCE---------------EEEEECTTSS
T ss_pred             eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-Cceeeeec-cCCCCce---------------EEEEECCCCC
Confidence             00013456789999999999999976 9999999975 432  223 4566544               7999999999


Q ss_pred             EEEEeeCCCeEEEEecCCCCCceeE--EecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--C-cc-cccc
Q 014644          318 HFATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-HH-ELSY  390 (421)
Q Consensus       318 ~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~-~~-~~~~  390 (421)
                      +|++++.|++|++|++.+.......  +.+|...|.+++|+|+  ++     +|++|+.|+. ++|+..  + .. ....
T Consensus       505 ~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd--g~-----~lasgs~D~~v~lW~~~~~~~~~~~~~~  577 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD--NV-----RLATGSLDNSVIVWNMNKPSDHPIIIKG  577 (611)
T ss_dssp             EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT--SS-----EEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             EEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC--CC-----EEEEEECCCcEEEEECCCcccccchhhc
Confidence            9999999999999999873233332  4459999999999999  44     8999999999 999432  2 22 3456


Q ss_pred             cc-ccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          391 NL-SSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       391 ~~-~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      +| ...|.+++|+||++ |++++ ++.+++|+.
T Consensus       578 ~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          578 AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             SSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             cCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            78 78999999999999 77777 667999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-41  Score=302.58  Aligned_cols=292  Identities=17%  Similarity=0.250  Sum_probs=228.0

Q ss_pred             cccccc-cccc-cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           25 DYLKSL-EIEE-KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        25 ~~~~~~-~h~~-~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      ..+..+ +|.+ .|.+++|  +|++++||+|+.|++|+|||+.++...                                
T Consensus         6 ~~~~~~~~h~~~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~--------------------------------   51 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWI--------------------------------   51 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEE--------------------------------
T ss_pred             EEeeeecCCCCCcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcce--------------------------------
Confidence            334433 5776 8999999  799999999999999999998775411                                


Q ss_pred             eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCC
Q 014644          103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKP  180 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~  180 (421)
                                                +...+..+|...|.+++|+|++++|+++ .|++|++|++.... +++..     
T Consensus        52 --------------------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~-----  100 (345)
T 3fm0_A           52 --------------------------CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT-----  100 (345)
T ss_dssp             --------------------------EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE-----
T ss_pred             --------------------------eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE-----
Confidence                                      1111226899999999999999999999 99999999987332 23333     


Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                        +.+|...|.+++|+|++ ++|++++.|++|++||++.+... .....             +..|...|.+++|+|+++
T Consensus       101 --~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~-~~~~~-------------~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A          101 --LEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY-ECVSV-------------LNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             --ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE-EEEEE-------------ECCCCSCEEEEEECSSSS
T ss_pred             --ccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe-EEEEE-------------ecCcCCCeEEEEECCCCC
Confidence              37899999999999999 99999999999999999875321 01122             234578999999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCc--ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          261 HLLSRDY-MNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      +|++++. +.|++||++. +.  +...+.+|...+               .+++|+|+|++|++|+.|++|+||+.....
T Consensus       164 ~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v---------------~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEE-DDWVCCATLEGHESTV---------------WSLAFDPSGQRLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             CEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred             EEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCce---------------EEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence            9999876 9999999975 43  345677777755               899999999999999999999999974321


Q ss_pred             C--------------ceeEEec-CCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--C----cc-----cccc
Q 014644          338 A--------------GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G----HH-----ELSY  390 (421)
Q Consensus       338 ~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~----~~-----~~~~  390 (421)
                      .              ....+.+ |...+..++|+++       ...|++++.|+. ++|...  .    ..     ....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-------~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  300 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL-------TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ  300 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT-------TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecC-------CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence            1              1223333 8889999999988       348999999999 999321  1    11     1124


Q ss_pred             ccccCeEEEEEccCCC-eEEEec-CCceEEEeC
Q 014644          391 NLSSKLLHLAWHPTTN-LIACAN-GNSLFFHYA  421 (421)
Q Consensus       391 ~~~~~v~~~~~spd~~-~la~~~-~~~~~i~~~  421 (421)
                      +|...|++++|+|+++ +||+++ ++.+++|+.
T Consensus       301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence            7889999999999985 899888 566999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-41  Score=310.08  Aligned_cols=293  Identities=14%  Similarity=0.148  Sum_probs=234.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +|++++|++|+.|++|+|||+.+++                                         
T Consensus        63 ~gH~~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------------------------   99 (380)
T 3iz6_a           63 QGHSGKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQ-----------------------------------------   99 (380)
T ss_dssp             CCCSSCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE-----------------------------------------
T ss_pred             cccccEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----------------------------------------
Confidence            479999999999  7899999999999999999988754                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +...+ ..|...|.+++|+|++++|++| .|+.+++|++.......... .....+.+|.+
T Consensus       100 -------------------~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~gh~~  158 (380)
T 3iz6_a          100 -------------------KTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKG  158 (380)
T ss_dssp             -------------------EEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS-TTCCBCCCCSS
T ss_pred             -------------------cceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc-cceeeccCCCc
Confidence                               22233 6788899999999999999999 99999999997321110000 00124578999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  267 (421)
                      .|.++.|+|++...|++++.|++|++||+++++..    ..+..        ....+|...|.+++|+| ++.+|++|+.
T Consensus       159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence            99999999986578999999999999999987643    22211        01134578999999987 7889999875


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                       +.|++||++..+..+..+.+|...+               .+++|+|++++|++|+.||+|++||++++ .....+..+
T Consensus       227 D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~  290 (380)
T 3iz6_a          227 DTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNRE  290 (380)
T ss_dssp             TSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCC
T ss_pred             CCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEeccc
Confidence             9999999986567888898888865               79999999999999999999999999987 445555443


Q ss_pred             C-------CCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccc----cccccCeEEEEEccCCCeEEEec
Q 014644          347 K-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELS----YNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       347 ~-------~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~----~~~~~~v~~~~~spd~~~la~~~  412 (421)
                      .       ..+..++|+|+  +     .+|++|+.|+. ++|+  .++.....    .+|...|++++|+||+++||+|+
T Consensus       291 ~~~~~~~~~~v~~~~~s~~--g-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSIS--G-----RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSS--S-----SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             ccccccccCceEEEEECCC--C-----CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            3       24788999998  4     48999999999 9994  33333332    47889999999999999999999


Q ss_pred             -CCceEEEeC
Q 014644          413 -GNSLFFHYA  421 (421)
Q Consensus       413 -~~~~~i~~~  421 (421)
                       ++.++||+.
T Consensus       364 ~D~~i~iW~~  373 (380)
T 3iz6_a          364 WDKNLKIWAF  373 (380)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCCEEEEec
Confidence             567999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.4e-40  Score=319.12  Aligned_cols=314  Identities=18%  Similarity=0.239  Sum_probs=259.4

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|++++|  +|++.++++++.|++|++||........+.  .+..            .+.++.++++...++.++
T Consensus       259 ~~~~~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~--~h~~------------~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          259 TGHSSSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSS------------SVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSS------------CEEEEEECTTSSEEEEEE
T ss_pred             ecCCCCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcEEEEEe--cCCC------------CeEEEEECCCCCEEEEEe
Confidence            368999999999  799999999999999999997654433332  2344            445555666666666665


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|+...    ..+..+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++.+..+       .+|..
T Consensus       323 ~--d~~i~~w~~~~----~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~~-------~~~~~  386 (577)
T 2ymu_A          323 D--DKTVKLWNRNG----QHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL-------TGHSS  386 (577)
T ss_dssp             T--TSCEEEEETTS----CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEEE-------ECCSS
T ss_pred             C--CCeEEEEeCCC----CeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEEe-------cCCCC
Confidence            4  56789999764    445566 7999999999999999999999 99999999975  4555544       67899


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+|++ ++|++++.|+.|++||... +..    ..+.             +|...|.+++|+||+++|++++. 
T Consensus       387 ~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~~----~~~~-------------~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          387 SVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTLT-------------GHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             CEEEEEECTTS-SCEEEEETTSEEEEECTTC-CEE----EEEE-------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CEE----EEec-------------CCCCCeEEEEECCCCCEEEEEcCC
Confidence            99999999999 9999999999999999643 221    2333             34789999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.|++||..  ++.+..+.+|...+               .+++|+|++++|++++.|+.|++||..  ......+.+|.
T Consensus       448 ~~v~~w~~~--~~~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~  508 (577)
T 2ymu_A          448 KTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHS  508 (577)
T ss_dssp             SEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEECCS
T ss_pred             CEEEEEECC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCC
Confidence            999999974  67788888887755               799999999999999999999999964  36788899999


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ..|..++|+|+  ++     +|++++.|+. ++|+ .++.+....+|...|++++|+||+++|++++ ++.|++|+
T Consensus       509 ~~v~~l~~s~d--g~-----~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          509 SSVRGVAFSPD--GQ-----TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEEEEEECTT--SS-----CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEcCC--CC-----EEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999998  44     8999999999 9994 4455666779999999999999999999988 55699996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.5e-40  Score=296.35  Aligned_cols=282  Identities=13%  Similarity=0.159  Sum_probs=226.7

Q ss_pred             ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|++++|  +++ +++|++|+.|++|++|++.......                                     
T Consensus        14 ~gH~~~V~~l~~--~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-------------------------------------   54 (319)
T 3frx_A           14 EGHNGWVTSLAT--SAGQPNLLLSASRDKTLISWKLTGDDQKF-------------------------------------   54 (319)
T ss_dssp             CCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEEEEEETTEE-------------------------------------
T ss_pred             ccccceEEEEEc--cCCCccEEEEecCCccEEEecCCCCCccc-------------------------------------
Confidence            378999999999  565 5899999999999999986432000                                     


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        ..+++.+ .+|...|.+++|+|++++|+++ .|++|++||+. .++.+..+       .+|.
T Consensus        55 ------------------~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~-~~~~~~~~-------~~h~  107 (319)
T 3frx_A           55 ------------------GVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA-TGETYQRF-------VGHK  107 (319)
T ss_dssp             ------------------EEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-------ECCS
T ss_pred             ------------------cccceEE-eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC-CCCeeEEE-------ccCC
Confidence                              1445566 8999999999999999999999 99999999998 55655544       7899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC------CCE
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND------GQH  261 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~------~~~  261 (421)
                      ..|.+++|+|++ .+|++++.|++|++||++....     ..+.             +|...+.++.|+|+      +..
T Consensus       108 ~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~-----~~~~-------------~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A          108 SDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL-----ATLL-------------GHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             SCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE-----EEEC-------------CCSSCEEEEEECCC------CCE
T ss_pred             CcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----EEEe-------------ccCCcEEEEEEccCCCCCCCccE
Confidence            999999999999 9999999999999999975321     2233             34788999999985      447


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      +++++. +.|++||+++ .+....+.+|...+               .+++|+|++++|++|+.||.|++||+.++ ...
T Consensus       169 l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~  231 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQ-FQIEADFIGHNSNI---------------NTLTASPDGTLIASAGKDGEIMLWNLAAK-KAM  231 (319)
T ss_dssp             EEEEETTSCEEEEETTT-TEEEEEECCCCSCE---------------EEEEECTTSSEEEEEETTCEEEEEETTTT-EEE
T ss_pred             EEEEeCCCEEEEEECCc-chhheeecCCCCcE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEE
Confidence            888765 9999999986 77778888888765               79999999999999999999999999987 555


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCC--ccc--------cccccccCeEEEEEccCCCeEEE
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSG--HHE--------LSYNLSSKLLHLAWHPTTNLIAC  410 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~--~~~--------~~~~~~~~v~~~~~spd~~~la~  410 (421)
                      ..+.. ..++..++|+|+  +     ..|+++..++.++|....  ...        ....+...+.+++|+|||++|++
T Consensus       232 ~~~~~-~~~v~~~~~sp~--~-----~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          232 YTLSA-QDEVFSLAFSPN--R-----YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             EEEEC-CSCEEEEEECSS--S-----SEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             EEecC-CCcEEEEEEcCC--C-----CEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            55654 468999999998  3     378888777668883221  111        12234667999999999999999


Q ss_pred             ec-CCceEEEeC
Q 014644          411 AN-GNSLFFHYA  421 (421)
Q Consensus       411 ~~-~~~~~i~~~  421 (421)
                      |+ ++.|++|+.
T Consensus       304 g~~Dg~i~vWd~  315 (319)
T 3frx_A          304 GYTDNVIRVWQV  315 (319)
T ss_dssp             EETTSCEEEEEE
T ss_pred             eecCceEEEEEE
Confidence            98 556999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-41  Score=303.16  Aligned_cols=294  Identities=11%  Similarity=0.123  Sum_probs=220.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeec-CCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..|+..|.+++|  +|+|.+|++++ |+++|+||.....   .... ..+.                             
T Consensus        27 ~~~~~~v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~---~~~~~~~~~-----------------------------   71 (344)
T 4gqb_B           27 ACMERQLEAARY--RSDGALLLGAS-SLSGRCWAGSLWL---FKDPCAAPN-----------------------------   71 (344)
T ss_dssp             SSCCSEEEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEE---ESSGGGTTC-----------------------------
T ss_pred             ccccCCEEEEEE--CCCCCEEEEEe-CCceEEeeceeee---eccccccCC-----------------------------
Confidence            356788999999  79999988777 8899999843211   1000 0000                             


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                       ...+...  ..|...|.+++|+|++ .|++| .||+|+|||++++ +......   ..+.+|.
T Consensus        72 -----------------~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~-~~~~~~~---~~~~~H~  127 (344)
T 4gqb_B           72 -----------------EGFCSAG--VQTEAGVADLTWVGER-GILVASDSGAVELWELDEN-ETLIVSK---FCKYEHD  127 (344)
T ss_dssp             -----------------GGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTT-SSCEEEE---EEEECCS
T ss_pred             -----------------cceeeee--eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCC-CceeEee---ccccCCC
Confidence                             0011111  2466789999999986 56666 9999999999844 3332221   1235899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~  266 (421)
                      ..|++++|+|++ ++|++++.|++|++||+.+++..    ..+..             |...|.+++|+|++. +|++++
T Consensus       128 ~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~----~~~~~-------------h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          128 DIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVL----SSYRA-------------HAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcC-------------cCCceEEEEecCCCCCceeeec
Confidence            999999999999 99999999999999999987644    44444             488999999999985 677776


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      . ++|++||+++ +++...+..+....             .+.+++|+|+ +++|++|+.||.|++||++++ .....+.
T Consensus       190 ~D~~v~iwd~~~-~~~~~~~~~~~~~~-------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~  254 (344)
T 4gqb_B          190 EDNRILLWDTRC-PKPASQIGCSAPGY-------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSA  254 (344)
T ss_dssp             TTSCEEEEETTS-SSCEEECC----CC-------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEE
T ss_pred             cccccccccccc-cceeeeeecceeec-------------cceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEc
Confidence            5 9999999987 77776654332211             1268999995 678999999999999999987 6788899


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccccccCeEEEEEccCCC-eEEEec-CCceEEEe
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY  420 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-~~~~~i~~  420 (421)
                      +|...|.+++|+|+  +.    .+|++|+.|+. ++|+. .+.+....+|...|++++|+|+++ +|++++ ++.|++|+
T Consensus       255 ~h~~~v~~v~fsp~--g~----~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          255 VHSQCVTGLVFSPH--SV----PFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             CCSSCEEEEEECSS--SS----CCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEEEccC--CC----eEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            99999999999997  32    27899999999 99943 344556678999999999999987 466777 67799997


Q ss_pred             C
Q 014644          421 A  421 (421)
Q Consensus       421 ~  421 (421)
                      .
T Consensus       329 v  329 (344)
T 4gqb_B          329 V  329 (344)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-40  Score=299.86  Aligned_cols=284  Identities=13%  Similarity=0.137  Sum_probs=231.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +|++.+|++|+.|++|+|||..+++.                                        
T Consensus        61 ~gH~~~V~~~~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~----------------------------------------   98 (354)
T 2pbi_B           61 KGHGNKVLCMDW--CKDKRRIVSSSQDGKVIVWDSFTTNK----------------------------------------   98 (354)
T ss_dssp             ECCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCE----------------------------------------
T ss_pred             cCCCCeEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCc----------------------------------------
Confidence            389999999999  78999999999999999999876541                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                          ...+ ..|...|.+++|+|++.+|+++ .|+.+++|++.........  .....+.+|..
T Consensus        99 --------------------~~~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~  155 (354)
T 2pbi_B           99 --------------------EHAV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA--AKKKSVAMHTN  155 (354)
T ss_dssp             --------------------EEEE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG--GGCEEEEECSS
T ss_pred             --------------------ceEE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc--ccceeeeccCC
Confidence                                1122 4577789999999999999999 9999999998632110000  00012367999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC--CCCEEEEec
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD  266 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~  266 (421)
                      .|.+++|+|++ ..|++++.|++|++||+++++..    ..+..             |...|.+++|+|  +|.+|++++
T Consensus       156 ~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          156 YLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QSFHG-------------HGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             CEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECCCSSCCEEEEEE
T ss_pred             cEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EEEcC-------------CCCCeEEEEEEeCCCCCEEEEEe
Confidence            99999999998 99999999999999999987643    34444             478899999987  478999987


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      . +.|++||+++ ++++..+.+|...+               .+++|+|++.+|++|+.|++|++||++.. .....+..
T Consensus       218 ~Dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~  280 (354)
T 2pbi_B          218 CDKKAMVWDMRS-GQCVQAFETHESDV---------------NSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSK  280 (354)
T ss_dssp             TTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC
T ss_pred             CCCeEEEEECCC-CcEEEEecCCCCCe---------------EEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcC
Confidence            5 9999999997 88888888888765               79999999999999999999999999876 33444443


Q ss_pred             C--CCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEE
Q 014644          346 G--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH  419 (421)
Q Consensus       346 ~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~  419 (421)
                      +  ...+..+.|+|+  +     .+|++|+.|+. ++|+  .+..+....+|...|++++|+||+++||+|+ ++.+++|
T Consensus       281 ~~~~~~~~~~~~s~~--g-----~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          281 ESIIFGASSVDFSLS--G-----RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             TTCCSCEEEEEECTT--S-----SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CCcccceeEEEEeCC--C-----CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            3  346778899988  3     48999999999 9993  4555666778999999999999999999999 5569999


Q ss_pred             e
Q 014644          420 Y  420 (421)
Q Consensus       420 ~  420 (421)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-39  Score=291.12  Aligned_cols=281  Identities=22%  Similarity=0.328  Sum_probs=230.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +|++++|++++.|+.|++|++.+++                                         
T Consensus        20 ~gh~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------------------------   56 (312)
T 4ery_A           20 AGHTKAVSSVKF--SPNGEWLASSSADKLIKIWGAYDGK-----------------------------------------   56 (312)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC-----------------------------------------
T ss_pred             cccCCcEEEEEE--CCCCCEEEEeeCCCeEEEEeCCCcc-----------------------------------------
Confidence            478999999999  7899999999999999999987754                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         ..+.+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++.+..+       .+|..
T Consensus        57 -------------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~-------~~~~~  108 (312)
T 4ery_A           57 -------------------FEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKCLKTL-------KGHSN  108 (312)
T ss_dssp             -------------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSS
T ss_pred             -------------------cchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-CCcEEEEE-------cCCCC
Confidence                               22234 6899999999999999999999 99999999998 45555544       67999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..             |...|.+++|+|++++|++++. 
T Consensus       109 ~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A          109 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL----KTLPA-------------HSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             CEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE----EEecC-------------CCCcEEEEEEcCCCCEEEEEeCC
Confidence            99999999999 99999999999999999886543    33333             4778999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.|++||+++ ++.+..+..+...              .+..++|+|++++|++++.||.|++||+.++ .....+.+|.
T Consensus       171 ~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~  234 (312)
T 4ery_A          171 GLCRIWDTAS-GQCLKTLIDDDNP--------------PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHK  234 (312)
T ss_dssp             SCEEEEETTT-CCEEEEECCSSCC--------------CEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSC
T ss_pred             CcEEEEECCC-CceeeEEeccCCC--------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecC
Confidence            9999999986 6666555432221              1268999999999999999999999999987 6677788887


Q ss_pred             CCcccee--eecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec---CCceEEE
Q 014644          348 NENRKPI--LQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFH  419 (421)
Q Consensus       348 ~~~~~~~--~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~---~~~~~i~  419 (421)
                      .....+.  +.+.  .    ..+|++|+.|+. ++|  ..++......+|...|.+++|+|++++|++++   ++.+++|
T Consensus       235 ~~~~~~~~~~~~~--~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          235 NEKYCIFANFSVT--G----GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             CSSSCCCEEEECS--S----SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEEEEeC--C----CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence            7655443  3322  1    238999999999 999  44555666778999999999999999999886   6679999


Q ss_pred             eC
Q 014644          420 YA  421 (421)
Q Consensus       420 ~~  421 (421)
                      +.
T Consensus       309 ~~  310 (312)
T 4ery_A          309 KS  310 (312)
T ss_dssp             EC
T ss_pred             cC
Confidence            74

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.6e-41  Score=304.70  Aligned_cols=290  Identities=11%  Similarity=0.110  Sum_probs=219.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeC------CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      ..|+..|++|+|  +|||++||+|+.      |++|++|+..++....                                
T Consensus        39 ~~H~~~V~~v~f--SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------------------------------   84 (357)
T 4g56_B           39 ACMEVQIGAVRY--RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------------------------------   84 (357)
T ss_dssp             -CCCSEEEEEEE--CSSSCEEEEEECSSSSSCCEEEEEESSCC---CG--------------------------------
T ss_pred             ccccCCEEEEEE--CCCCCEEEEEcCCCCccccCeEEEEECCCCCcce--------------------------------
Confidence            469999999999  799999999998      5667777665543100                                


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                              ...... .+|...|.+++|+|++++|+++.|++|+|||+.+ ++.....   ....
T Consensus        85 ------------------------~~~~~~-~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~-~~~~~~~---~~~~  135 (357)
T 4g56_B           85 ------------------------SLCTAG-VQTEAGVTDVAWVSEKGILVASDSGAVELWEILE-KESLLVN---KFAK  135 (357)
T ss_dssp             ------------------------GGCSEE-EECSSCEEEEEEETTTEEEEEETTSCEEEC---------CCC---CEEE
T ss_pred             ------------------------eEeccc-CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc-cceeEEE---eecc
Confidence                                    111112 4788899999999999777666999999999984 3322211   0122


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EE
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  262 (421)
                      .+|...|.+++|+|++ ++|++++.|++|++||+++++..    ..+..             |...|.+++|+|++. ++
T Consensus       136 ~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~----~~~~~-------------h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVL----KSYNA-------------HSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTCSSCE
T ss_pred             CCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcC-------------CCCCEEEEEEccCCCcee
Confidence            5799999999999999 99999999999999999987643    33344             478999999999875 66


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCce
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      ++++. +.|++||+++ +++...+..+....             .+.+++|+|+ +.+|++|+.|+.|++||++++ ...
T Consensus       198 ~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~-------------~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~  262 (357)
T 4g56_B          198 LSCGEDGRILLWDTRK-PKPATRIDFCASDT-------------IPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSA  262 (357)
T ss_dssp             EEEETTSCEEECCTTS-SSCBCBCCCTTCCS-------------CEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGC
T ss_pred             eeeccCCceEEEECCC-Cceeeeeeeccccc-------------cccchhhhhcccceEEEeecccceeEEECCCC-cEe
Confidence            67654 9999999986 66555444322211             1268999997 578999999999999999987 678


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccccccCeEEEEEcc-CCCeEEEec-CCce
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHP-TTNLIACAN-GNSL  416 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~~~~~v~~~~~sp-d~~~la~~~-~~~~  416 (421)
                      ..+.+|...+..++|+|+  +.    .+|++|+.|+. ++|+. .+......+|...|++++|+| |+.+||+++ ++.|
T Consensus       263 ~~~~~~~~~v~~l~~sp~--~~----~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYH--SS----PFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             EEECCCSSCEEEEEECSS--SS----CCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             EEEeccceeEEEEEEcCC--CC----CEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence            889999999999999987  22    27899999999 99943 334455668999999999999 799999988 6679


Q ss_pred             EEEeC
Q 014644          417 FFHYA  421 (421)
Q Consensus       417 ~i~~~  421 (421)
                      ++|+.
T Consensus       337 ~iW~~  341 (357)
T 4g56_B          337 LHHHL  341 (357)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-39  Score=294.49  Aligned_cols=287  Identities=14%  Similarity=0.144  Sum_probs=222.1

Q ss_pred             ccccccEEEEEEEE----cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           30 LEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        30 ~~h~~~V~~v~~~~----~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      .+|.+.|++++|.+    .+++.+|++|+.|++|++||+.+.+....                                 
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---------------------------------   64 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---------------------------------   64 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---------------------------------
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---------------------------------
Confidence            37999999999822    23789999999999999999876431000                                 


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                                          ...+...+ .+|...|.+++|+|++.+|+++ .|++|++||++ .++.+..+       .
T Consensus        65 --------------------~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~-~~~~~~~~-------~  115 (343)
T 2xzm_R           65 --------------------FGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR-TGTTYKRF-------V  115 (343)
T ss_dssp             --------------------SEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT-SSCEEEEE-------E
T ss_pred             --------------------cccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEEE-------c
Confidence                                01344556 8999999999999999999999 99999999998 45555544       7


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-----
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----  259 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-----  259 (421)
                      +|...|.+++|+|++ .+|++++.|++|++||+......    . ...          ...|...+.+++|+|++     
T Consensus       116 ~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~----~-~~~----------~~~~~~~v~~~~~~~~~~~~~~  179 (343)
T 2xzm_R          116 GHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF----S-SAE----------KENHSDWVSCVRYSPIMKSANK  179 (343)
T ss_dssp             CCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----E-CCT----------TTSCSSCEEEEEECCCCCSCSC
T ss_pred             CCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----e-eec----------ccCCCceeeeeeeccccccccc
Confidence            899999999999999 99999999999999999743211    1 110          12347789999999987     


Q ss_pred             -----CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          260 -----QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       260 -----~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                           .++++++. +.|++||..  .+....+.+|...+               .+++|+|+|++|++|+.||.|++||+
T Consensus       180 ~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v---------------~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          180 VQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNV---------------NHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             cCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccc---------------eEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                 68888865 999999953  66677788887755               79999999999999999999999999


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccc--c-----------ccccccCeE
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE--L-----------SYNLSSKLL  397 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~--~-----------~~~~~~~v~  397 (421)
                      .........+ .+...+..++|+|+  +.     +++++ .|+. ++|+.  .....  .           ..+|...|.
T Consensus       243 ~~~~~~~~~~-~~~~~v~~v~~sp~--~~-----~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  313 (343)
T 2xzm_R          243 LNLTYPQREF-DAGSTINQIAFNPK--LQ-----WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT  313 (343)
T ss_dssp             SCCSSCSEEE-ECSSCEEEEEECSS--SC-----EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEE
T ss_pred             CCCcccceee-cCCCcEEEEEECCC--CC-----EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceE
Confidence            6543444443 34567999999988  33     66655 4555 99932  22111  1           125778899


Q ss_pred             EEEEccCCCeEEEec-CCceEEEe
Q 014644          398 HLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       398 ~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +++|+|++++||+|+ ++.+++|+
T Consensus       314 ~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          314 SLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEECSSSCCEEEEETTSEEEEEE
T ss_pred             EEEECCCCCeEEEecCCceEEEEE
Confidence            999999999999998 55699997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-39  Score=297.02  Aligned_cols=299  Identities=16%  Similarity=0.197  Sum_probs=230.1

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      ..+.++|...|++++|  +|++++||+|+ |+++++|++.+++.......+....                         
T Consensus        57 ~~~~~~h~~~V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-------------------------  108 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-------------------------  108 (393)
T ss_dssp             EEEEEECSSCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------
T ss_pred             eEEecCCCCEEEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc-------------------------
Confidence            3455689999999999  79999999876 7899999999877332211100000                         


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                                   .+...    ...... ..+...|++++|+|++++|++| .|++|++||+. .++....+       .
T Consensus       109 -------------~~~~~----~~~~~~-~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~-~~~~~~~~-------~  162 (393)
T 1erj_A          109 -------------KDPEN----LNTSSS-PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMIL-------Q  162 (393)
T ss_dssp             ------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-------C
T ss_pred             -------------ccccc----cccccc-CCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEE-------c
Confidence                         00000    000001 2445569999999999999999 99999999998 55555544       7


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  263 (421)
                      +|...|.+++|+|++ ..|++++.|++|++||+++++..    ..+..              ...+..++|+| ++++|+
T Consensus       163 ~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          163 GHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCS----LTLSI--------------EDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSTTCCEEE
T ss_pred             cCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeE----EEEEc--------------CCCcEEEEEECCCCCEEE
Confidence            899999999999999 99999999999999999987643    22222              45789999999 899999


Q ss_pred             EecC-CeEEEEECCCCCcceeEE-------eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATF-------KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      +++. +.|++||+++ +..+..+       .+|...+               .+++|+|++++|++|+.||.|++||+++
T Consensus       224 ~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          224 AGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSV---------------YSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEETTSCEEEEETTT-CCEEEEEC------CCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCE---------------EEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9876 9999999986 6666655       3344433               7999999999999999999999999986


Q ss_pred             CC-----------CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEE
Q 014644          336 GS-----------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAW  401 (421)
Q Consensus       336 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~  401 (421)
                      ..           .....+.+|...+..++++++       ..+|++|+.|+. ++|  ..+..+....+|...|.+++|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-------DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGG-------GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCC-------CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            42           234577899999999999988       348999999999 999  445566667789999999998


Q ss_pred             cc------CCCeEEEec-CCceEEEe
Q 014644          402 HP------TTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       402 sp------d~~~la~~~-~~~~~i~~  420 (421)
                      +|      ++++||+|+ ++.++||+
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECc
Confidence            86      688999998 55699997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-38  Score=309.25  Aligned_cols=315  Identities=18%  Similarity=0.234  Sum_probs=258.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|.+++|  +|++.+|++++.|+.|++||.....+..+.  .+..            .+.++.+.++...+..++
T Consensus       218 ~~~~~~v~~~~~--s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~--~~~~------------~v~~v~~~~d~~~l~~~~  281 (577)
T 2ymu_A          218 TGHSSSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSS------------SVNGVAFRPDGQTIASAS  281 (577)
T ss_dssp             ECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEEC--CCSS------------CEEEEEECTTSSEEEEEE
T ss_pred             ecCCCCEEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCEEEEEe--cCCC------------CEEEEEEcCCCCEEEEEe
Confidence            368899999999  799999999999999999997654443332  2334            444555566666666665


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|+...    ++++.+ .+|...|.+++|+|+++.|+++ .|++|++||.. .. ....+       .+|..
T Consensus       282 ~--d~~i~~w~~~~----~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~-~~~~~-------~~~~~  345 (577)
T 2ymu_A          282 D--DKTVKLWNRNG----QLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ-HLQTL-------TGHSS  345 (577)
T ss_dssp             T--TSCEEEEETTS----CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-EEEEE-------CCCSS
T ss_pred             C--CCEEEEEeCCC----cEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CC-eeEEE-------eCCCC
Confidence            4  56789998643    566777 8999999999999999999999 99999999987 33 33333       67889


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .+.+++|+|++ ..|++++.|+.|++||... +..    ..+.             .|...|.+++|+|+|++|++++. 
T Consensus       346 ~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~~----~~~~-------------~~~~~v~~~~~s~dg~~l~~~~~d  406 (577)
T 2ymu_A          346 SVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QLL----QTLT-------------GHSSSVRGVAFSPDGQTIASASDD  406 (577)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSEEEEEETTC-CEE----EEEE-------------CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CEE----EEec-------------CCCCCeEEEEECCCCCEEEEEeCC
Confidence            99999999999 9999999999999999643 221    2233             34789999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.|++||..  ++.+..+.+|...+               .+++|+|++++|++++.|+.|++||+.  ......+.+|.
T Consensus       407 ~~v~~~~~~--~~~~~~~~~~~~~v---------------~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~  467 (577)
T 2ymu_A          407 KTVKLWNRN--GQLLQTLTGHSSSV---------------WGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHS  467 (577)
T ss_dssp             SEEEEECTT--CCEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCS
T ss_pred             CEEEEEeCC--CCEEEEecCCCCCe---------------EEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCC
Confidence            999999964  67788888888755               799999999999999999999999975  36778899999


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccC-CCCCccccccccccCeEEEEEccCCCeEEEecC-CceEEEeC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHYA  421 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw-~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~i~~~  421 (421)
                      .++..++|+|+  +     .+|++++.|+. ++| ..++.+....+|...|++++|+||+++||+++. +.+++|+.
T Consensus       468 ~~v~~~~~spd--~-----~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          468 SSVRGVAFSPD--G-----QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             SCEEEEEECTT--S-----CEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CCEEEEEEcCC--C-----CEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            99999999998  3     38999999999 999 444556667789999999999999999999985 56999973

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-39  Score=290.48  Aligned_cols=284  Identities=14%  Similarity=0.144  Sum_probs=214.2

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|++.|.+++|  +++  +|++|+.|++|+|||+..+..                                         
T Consensus        12 ~h~~~v~~~~~--s~~--~las~~~D~~i~lw~~~~~~~-----------------------------------------   46 (330)
T 2hes_X           12 LYKEKIWSFDF--SQG--ILATGSTDRKIKLVSVKYDDF-----------------------------------------   46 (330)
T ss_dssp             CCSSCEEEEEE--ETT--EEEEEESSSCEEEEECSSSCC-----------------------------------------
T ss_pred             cCCCceeeecc--CCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------------
Confidence            68999999999  455  999999999999999976431                                         


Q ss_pred             ccccceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC------ceeeeeeecCCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------DQCFNIVDMKPSN  182 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~------~~~~~~~~~~~~~  182 (421)
                                       .....+. .+|...|.+++|+|++++|+++ .|++|++||+...      .+....       
T Consensus        47 -----------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-------  102 (330)
T 2hes_X           47 -----------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-------  102 (330)
T ss_dssp             -----------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE-------
T ss_pred             -----------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE-------
Confidence                             1111121 3499999999999999999999 9999999998521      122332       


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      +.+|...|.+++|+|++ ++|++++.|++|++||++......+....+             .+|...|.+++|+|++.+|
T Consensus       103 ~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~-------------~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL-------------QEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             EC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE-------------CCCSSCEEEEEECSSSSEE
T ss_pred             EcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe-------------ccCCCceEEEEECCCCCEE
Confidence            37899999999999999 999999999999999996432111111223             3458899999999999999


Q ss_pred             EEecC-CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEEecCCCC
Q 014644          263 LSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      ++++. ++|++||... +  +++..+.+|...+               .+++|+|+  +.+|++|+.|++|++||+..+.
T Consensus       169 ~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~  232 (330)
T 2hes_X          169 ASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTV---------------WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD  232 (330)
T ss_dssp             EEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEECCC-CCeeEEEEccCCCCcE---------------EEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence            99876 9999999875 4  5677888888765               79999998  7789999999999999987542


Q ss_pred             -------CceeEEec-CCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC----ccc-ccccccc-CeEEEEEc
Q 014644          338 -------AGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----HHE-LSYNLSS-KLLHLAWH  402 (421)
Q Consensus       338 -------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~----~~~-~~~~~~~-~v~~~~~s  402 (421)
                             .....+.. |...+..++|++.        ..|++++.|+. ++|+...    ... ...+|.. .|.+++|+
T Consensus       233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~  304 (330)
T 2hes_X          233 EDDQQEWVCEAILPDVHKRQVYNVAWGFN--------GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL  304 (330)
T ss_dssp             TTSCEEEEEEEECCSCCSSCEEEEEECTT--------SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred             ccccceeEEeeecccccccceEEEEEcCC--------CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence                   12333444 8999999999854        27999999999 9994321    111 2346766 89999999


Q ss_pred             c--CCCeEEEec-CCceEEEeC
Q 014644          403 P--TTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       403 p--d~~~la~~~-~~~~~i~~~  421 (421)
                      |  ++++||+|+ ++.++||+.
T Consensus       305 ~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          305 ELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             -----CCEEEEETTSEEEEEEC
T ss_pred             cCCCceEEEEecCCCcEEEEEe
Confidence            9  789999998 556999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-40  Score=304.31  Aligned_cols=338  Identities=12%  Similarity=0.141  Sum_probs=258.3

Q ss_pred             cccccccEEEEEEEEcCCCC-eEEEE----------eCCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeec
Q 014644           29 SLEIEEKINRVRWCAAPNGS-MFILS----------TNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNE   96 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~-~l~t~----------s~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~   96 (421)
                      .+.+.++|.+++|  +|++. +|+++          +.|++|+|||+.+++. +.+....+..            .+.++
T Consensus         8 ~l~~~~~v~~~~~--sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~------------~v~~~   73 (416)
T 2pm9_A            8 KLAEFSRTATFAW--SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDS------------KFNDL   73 (416)
T ss_dssp             --CEEEESCBCCB--CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSS------------CEEEE
T ss_pred             hHhhhhhcceEee--CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCC------------ceEEE
Confidence            4456678999999  78876 99999          8999999999988752 2333333444            45555


Q ss_pred             cCCCCceeeeecccccccceeEEeeccccee-eeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCc---
Q 014644           97 HNPPSFAHGYHLEWTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD---  170 (421)
Q Consensus        97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~---  170 (421)
                      .++++..+++.++.  ++.+++|++...... +++..+ .+|...|.+++|+|+ +++|+++ .|++|++||+....   
T Consensus        74 ~~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           74 DWSHNNKIIAGALD--NGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             EECSSSSCEEEEES--SSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred             EECCCCCeEEEEcc--CCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            66667777777655  568999999873222 466777 899999999999998 8999999 99999999998443   


Q ss_pred             ---eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccc
Q 014644          171 ---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  247 (421)
Q Consensus       171 ---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  247 (421)
                         .....     .....|...|.+++|+|++..+|++++.|+.|++||+++++..    ..+..|.       ...+|.
T Consensus       151 ~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~-------~~~~~~  214 (416)
T 2pm9_A          151 SNYTPLTP-----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS-------PNSGIK  214 (416)
T ss_dssp             TTCCCBCC-----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC-------CSSCCC
T ss_pred             cccccccc-----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc-------cccccC
Confidence               22111     2346789999999999994489999999999999999987643    2222210       012236


Q ss_pred             cceeEEEEcCCC-CEEEEecC-C---eEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcC-CCCEEE
Q 014644          248 ASISDIKFANDG-QHLLSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFA  320 (421)
Q Consensus       248 ~~v~~~~~s~~~-~~l~~~~~-~---~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~  320 (421)
                      ..+.+++|+|++ .++++++. +   .|++||+++...++..+. +|...+               .+++|+| ++++|+
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLL  279 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEE
Confidence            789999999997 57888765 7   999999987446677776 676654               7999999 899999


Q ss_pred             EeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc--cccc--------
Q 014644          321 TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH--HELS--------  389 (421)
Q Consensus       321 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~--~~~~--------  389 (421)
                      +++.||.|++||+.++ .....+.+|...+..++|+|+  +.    ..|++++.|+. ++|+....  ....        
T Consensus       280 s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~--~~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  352 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPE--AP----DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ  352 (416)
T ss_dssp             EEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTT--CT----TEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred             EEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCC--CC----CEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence            9999999999999987 778889999999999999998  21    38999999999 99932211  1110        


Q ss_pred             ---------------------------cccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          390 ---------------------------YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       390 ---------------------------~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                                                 ..+...+..++|+|||++||+++ ++.++||+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             --------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             CCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                                       11567788999999999999999 556999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-38  Score=292.73  Aligned_cols=334  Identities=13%  Similarity=0.058  Sum_probs=256.5

Q ss_pred             ccccccccccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeec----CCcee------EEeeecCCCCCcccccccccccc
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV----RDQKV------KKIKEMDHFPFVSSENTLLAEKN   92 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~----~~~~~------~~~~~~~~~~~v~~~~~~~~~~~   92 (421)
                      ...+....|.+.|++++|  +|++. +|++|+.|+.|++||+    .+++.      ...........   .........
T Consensus        36 ~~~~~~~~~~~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  110 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS---ASSGKTTNQ  110 (425)
T ss_dssp             CEECEEEEECSCCSEEEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---------CBC
T ss_pred             hhheeeeeccCceEEEEE--CCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc---ccccCCCCc
Confidence            344555677899999999  78898 9999999999999999    77651      11111100000   000011235


Q ss_pred             eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce
Q 014644           93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  171 (421)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~  171 (421)
                      +.++.+++++.+++.++.  ++.+++|+ ...   +.+..+ .+|...|.+++|+|++++|+++ .|+.|++||+. .++
T Consensus       111 v~~~~~s~~~~~l~~~~~--dg~i~i~~-~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~  182 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVE--NGELRLWN-KTG---ALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGT  182 (425)
T ss_dssp             EEEEEECTTSSEEEEEET--TSCEEEEE-TTS---CEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTE
T ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEe-CCC---Ceeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCc
Confidence            667777777777777765  56899998 333   677777 8999999999999999999998 99999999998 555


Q ss_pred             eeeeeecCCCCCCccCCC---------------eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccccc
Q 014644          172 CFNIVDMKPSNMDDLTEV---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  236 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~---------------v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~  236 (421)
                      ....+       ..+...               +.+++|+|++  .+++++.|+.|++||++.+...    ..+..    
T Consensus       183 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~~----  245 (425)
T 1r5m_A          183 VMQHF-------ELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLIG----  245 (425)
T ss_dssp             EEEEE-------CCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEECC----
T ss_pred             EEEEe-------eccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeecc----
Confidence            55544       233333               8999999985  6889999999999999986533    23333    


Q ss_pred             CCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC
Q 014644          237 HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  315 (421)
Q Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  315 (421)
                               |...|.+++|+|++++|++++. +.|++||+++ ++.+..+..|...+               .+++|+|+
T Consensus       246 ---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~  300 (425)
T 1r5m_A          246 ---------HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGD  300 (425)
T ss_dssp             ---------CSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETT
T ss_pred             ---------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCC
Confidence                     4788999999999999999875 9999999986 77788887777654               79999999


Q ss_pred             CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--C--------
Q 014644          316 GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G--------  384 (421)
Q Consensus       316 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~--------  384 (421)
                      + ++++++.||.|++||+.++ .....+..|..++..+.|+|+       ...|++++.|+. ++|+..  .        
T Consensus       301 ~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~-------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  371 (425)
T 1r5m_A          301 D-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQD-------GQKYAVAFMDGQVNVYDLKKLNSKSRSLYG  371 (425)
T ss_dssp             T-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTT-------SSEEEEEETTSCEEEEECHHHHC-------
T ss_pred             C-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCC-------CCEEEEEECCCeEEEEECCCCccceeeeec
Confidence            9 9999999999999999987 677888899999999999998       338999999999 999332  2        


Q ss_pred             ------------cccccccccc--CeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          385 ------------HHELSYNLSS--KLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       385 ------------~~~~~~~~~~--~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                                  .+.....+..  .|.+++|+|++++|++++ ++.+++|+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence                        3445556755  999999999999999888 556999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-38  Score=290.62  Aligned_cols=329  Identities=9%  Similarity=0.053  Sum_probs=248.8

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      ..+++++|  +|++++|++++.|++|++||+.+++......  .+.            ......++++...++.++.  +
T Consensus        57 ~~~~~~~~--s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~l~~~~~--d  118 (420)
T 3vl1_A           57 DAGKGNTF--EKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RAD------------YTAVDTAKLQMRRFILGTT--E  118 (420)
T ss_dssp             BCCTTCEE--EEEETTEEEEEETTEEEEEECCSEETTTTSC--SCC------------EEEEEEECSSSCEEEEEET--T
T ss_pred             ccccceee--eecCCeEEEEEcCCcEEEEEecccceeeEEe--cCC------------ceEEEEEecCCCEEEEEEC--C
Confidence            34558899  6889999999999999999998765221111  111            2223345566677777765  5


Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      +.+++|++...   ++...+ .+|...|++++|+|++++|+++ .|++|++||++ .++....+       .+|...|.+
T Consensus       119 g~i~iwd~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~-------~~h~~~v~~  186 (420)
T 3vl1_A          119 GDIKVLDSNFN---LQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTL-------IGHRATVTD  186 (420)
T ss_dssp             SCEEEECTTSC---EEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEE-------ECCSSCEEE
T ss_pred             CCEEEEeCCCc---ceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEE-------cCCCCcEEE
Confidence            68999998876   777776 8999999999999999999999 99999999998 45555443       679999999


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccC-----------CCcccccccccceeEEEEcCCCCE
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH-----------GSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      ++|+|++ .+|++++.|+.|++||+++++..    ..+..|....           ........+...+.+++|+|++++
T Consensus       187 ~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (420)
T 3vl1_A          187 IAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY  261 (420)
T ss_dssp             EEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred             EEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence            9999999 99999999999999999987644    2232211000           001112234567788888999999


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecCCCCC
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      |++++. +.|++||+++ ++....+. .|...+               .+++|+|+++ +|++|+.||.|++||++++..
T Consensus       262 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          262 VIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             EEEEETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             EEEEcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            999876 9999999987 55555543 344433               7999999998 999999999999999998866


Q ss_pred             ceeEEec-CCCCccceeeecCCcccccccceeeeecccCc-ccCCCC-----------CccccccccccCeEEEEEccCC
Q 014644          339 GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-----------GHHELSYNLSSKLLHLAWHPTT  405 (421)
Q Consensus       339 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-----------~~~~~~~~~~~~v~~~~~spd~  405 (421)
                      ....+.+ |...+..+.+. +  +     ..|++++.|+. ++|+..           ........+...|.+++|+|++
T Consensus       326 ~~~~~~~~~~~~v~~~~~~-~--~-----~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVYFA-A--G-----ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDD  397 (420)
T ss_dssp             CSEEEEESTTSCEEEEEEE-T--T-----EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCS
T ss_pred             chhhhhccCCCCceEEEeC-C--C-----CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCC
Confidence            5677776 66677777554 4  2     38999999999 999322           1122344677899999999999


Q ss_pred             C----eEEEecCCceEEEeC
Q 014644          406 N----LIACANGNSLFFHYA  421 (421)
Q Consensus       406 ~----~la~~~~~~~~i~~~  421 (421)
                      +    ++++|+.+.+.+|+.
T Consensus       398 ~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          398 ESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             SSSCEEEEEETTTEEEEEES
T ss_pred             CCcceEEEEcCCceEEEEec
Confidence            9    777888888999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=280.40  Aligned_cols=246  Identities=14%  Similarity=0.158  Sum_probs=199.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|+..|++++|  +++ ..|++|+.||+|+|||+++++....                                     
T Consensus        79 ~~~~~~v~~~~~--s~d-~~l~~~s~dg~v~lWd~~~~~~~~~-------------------------------------  118 (344)
T 4gqb_B           79 VQTEAGVADLTW--VGE-RGILVASDSGAVELWELDENETLIV-------------------------------------  118 (344)
T ss_dssp             EEESSCEEEEEE--ETT-TEEEEEETTSEEEEEEECTTSSCEE-------------------------------------
T ss_pred             eccCCCEEEEEE--eCC-CeEEEEECCCEEEEEeccCCCceeE-------------------------------------
Confidence            456778999999  465 5788999999999999988651111                                     


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         ....+ .+|.+.|++++|+|++++|++| .|++|++||++ .++++..+       .+|..
T Consensus       119 -------------------~~~~~-~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~-------~~h~~  170 (344)
T 4gqb_B          119 -------------------SKFCK-YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSY-------RAHAA  170 (344)
T ss_dssp             -------------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-------CCCSS
T ss_pred             -------------------eeccc-cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEE-------cCcCC
Confidence                               11112 5899999999999999999999 99999999998 56666654       78999


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  267 (421)
                      .|.+++|+|++..+|++++.|++|++||+++++..    ..+..           ..+...+.+++|+|+ +++|++|+.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEET
T ss_pred             ceEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEecc
Confidence            99999999998668899999999999999987643    22221           122457899999995 567888865


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                       +.|++||+++ ++++..+.+|...+               .+++|+|++ ++|++|+.|++|+|||+.++  ....+.+
T Consensus       236 dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~~~~~~  297 (344)
T 4gqb_B          236 NGTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLS--ELFRSQA  297 (344)
T ss_dssp             TSEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCC--EEEEECC
T ss_pred             CCcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCC--cEEEEcC
Confidence             9999999997 88899999998865               899999997 57999999999999999876  3456889


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      |.+.|.+++|+|+  +.    .+|++++.|+. ++|..
T Consensus       298 H~~~V~~v~~sp~--~~----~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          298 HRDFVRDATWSPL--NH----SLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             CSSCEEEEEECSS--ST----TEEEEEETTSCEEEEEC
T ss_pred             CCCCEEEEEEeCC--CC----eEEEEEcCCCeEEEEEC
Confidence            9999999999998  32    26789999999 99943

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-37  Score=276.72  Aligned_cols=247  Identities=15%  Similarity=0.158  Sum_probs=208.8

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ .+|.+.|++++|+|++++|+++ .|++|++||+. .+.....+       ..|..+|.+++|+|++ ++|+++
T Consensus         4 ~~~~~~-~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~s~   73 (304)
T 2ynn_A            4 DIKKTF-SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-TQVEVRSI-------QVTETPVRAGKFIARK-NWIIVG   73 (304)
T ss_dssp             CCEEEE-EEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEE-------ECCSSCEEEEEEEGGG-TEEEEE
T ss_pred             eeEEee-cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCceeEEe-------eccCCcEEEEEEeCCC-CEEEEE
Confidence            455667 8999999999999999999999 99999999998 55555544       6788999999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|++|++||+.+++..    ..+..             |...|.+++|+|++++|++++. ++|++||+++.......+
T Consensus        74 s~d~~i~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKV----VDFEA-------------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             ETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEE----EEEeC-------------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            99999999999987643    33444             4889999999999999999876 999999998634566778


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS  364 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (421)
                      .+|...+               .+++|+| ++.+|++|+.|+.|++||+.+.........+|...+..+.+.+...+.  
T Consensus       137 ~~h~~~v---------------~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  199 (304)
T 2ynn_A          137 EGHEHFV---------------MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP--  199 (304)
T ss_dssp             CCCCSCE---------------EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC--
T ss_pred             cccCCcE---------------EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC--
Confidence            8888765               7999999 688999999999999999988755555556777888888888753333  


Q ss_pred             ccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          365 SLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       365 ~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                         +|++|+.|+. ++|  ..+..+....+|...|..++|+|++++|++|+ ++.+++|+.
T Consensus       200 ---~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          200 ---YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             ---EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             ---EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence               8999999999 999  34455667778999999999999999999999 556999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-36  Score=274.79  Aligned_cols=326  Identities=13%  Similarity=0.113  Sum_probs=254.1

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      ++...-|.++|.+++|  +|++++++++..++.+.+|...... .......|.+.|.            ++.++++..++
T Consensus         2 ~~~~~~~~~~v~~~~~--s~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~------------~~~~~~~~~~l   66 (337)
T 1gxr_A            2 YFQGAMGSKPAYSFHV--TADGQMQPVPFPPDALIGPGIPRHA-RQINTLNHGEVVC------------AVTISNPTRHV   66 (337)
T ss_dssp             CEEEEEEEEECCEEEE--CSSSCEEECCCCTTSSSSTTCCSEE-EEEEEECCSSCCC------------EEEECSSSSEE
T ss_pred             cccccccCCceeEEEE--CCCCCEEEeecCCCcEeccccCCcc-ccceeccCCCceE------------EEEEecCCcEE
Confidence            3444456789999999  7999999999988888888765543 2333335656444            44455566666


Q ss_pred             eecccccccceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeecCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSN  182 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~~  182 (421)
                      +.++   ++.+++|+............+. .+|...|.+++|+|++++|+++ .|+.|++||++.... ...       .
T Consensus        67 ~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~  136 (337)
T 1gxr_A           67 YTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-------E  136 (337)
T ss_dssp             EEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-------E
T ss_pred             EEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee-------e
Confidence            6665   5689999998764333444431 2789999999999999999999 999999999984332 222       2


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      +..|...|.+++|+|++ ++|++++.|+.|++||+++++..    ..+..             |...+.+++|+|++++|
T Consensus       137 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          137 LTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQG-------------HTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSEE
T ss_pred             cccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee----eeeec-------------ccCceEEEEECCCCCEE
Confidence            36788899999999998 99999999999999999986543    33333             47789999999999999


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      ++++. +.|++||+++ ++.+..+. +...+               .+++|+|++++|++++.+|.|++||+.+.  ...
T Consensus       199 ~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~--~~~  259 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLRE-GRQLQQHD-FTSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKP--DKY  259 (337)
T ss_dssp             EEEETTSEEEEEETTT-TEEEEEEE-CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSS--CEE
T ss_pred             EEEecCCcEEEEECCC-CceEeeec-CCCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCC--CeE
Confidence            99876 9999999986 77666654 33322               78999999999999999999999999876  345


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      .+..|..++..+.|+|+  +     ..|++++.|+. ++|+. .+.......+...|.+++|+|++++|++++ ++.+++
T Consensus       260 ~~~~~~~~v~~~~~~~~--~-----~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  332 (337)
T 1gxr_A          260 QLHLHESCVLSLKFAYC--G-----KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             EECCCSSCEEEEEECTT--S-----SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EEcCCccceeEEEECCC--C-----CEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence            78899999999999998  3     38999999999 99933 223334456788999999999999999988 556999


Q ss_pred             Ee
Q 014644          419 HY  420 (421)
Q Consensus       419 ~~  420 (421)
                      |+
T Consensus       333 w~  334 (337)
T 1gxr_A          333 YE  334 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=275.40  Aligned_cols=294  Identities=14%  Similarity=0.142  Sum_probs=236.1

Q ss_pred             ccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      +..+.-.+|.+.|++++|  ++++++|++++.||.|++||+.+++                                   
T Consensus        23 ~~~~~l~~h~~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------------------   65 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGE-----------------------------------   65 (369)
T ss_dssp             EEEEEEECCSSCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCC-----------------------------------
T ss_pred             cccEEEEEeeceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCch-----------------------------------
Confidence            344555689999999999  7899999999999999999988753                                   


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                               ++..+ .+|...|.+++|+|++++|+++ .|+.|++||+. .++....+      
T Consensus        66 -------------------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~------  112 (369)
T 3zwl_B           66 -------------------------RLGTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQCVATW------  112 (369)
T ss_dssp             -------------------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEE------
T ss_pred             -------------------------hhhhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEe------
Confidence                                     22334 6899999999999999999999 99999999998 55555544      


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcC-----CeEEEEECCcccccccchhhhccccccCCCccccccccc--ceeEEEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKF  255 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~~~~  255 (421)
                       . +...+.+++|+|++ ..+++++.+     +.|++||+.......    .+..  ........+..|..  .+.+++|
T Consensus       113 -~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          113 -K-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH----ELTK--VSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             -E-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----CEEE--ECSSCSEEEECCTTCCCEEEEEE
T ss_pred             -e-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----eecc--cccceeeeccCCcCccceeEEEE
Confidence             2 77889999999999 999999998     999999998765321    1111  01111122333444  8999999


Q ss_pred             cCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          256 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       256 s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      +|++++|++++. +.|++||+++..+.+..+..|...+               .+++|+|++++|++++.||.|++||+.
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---------------SDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---------------eEEEECCCCCEEEEecCCceEEEEECC
Confidence            999999999876 9999999986567788888877654               799999999999999999999999999


Q ss_pred             CCCCceeEEecCCCCccceeeecCCcccccccceeeeecccC--------------c-ccC--CCCCccccccccccCeE
Q 014644          335 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--------------A-HEN--SSSGHHELSYNLSSKLL  397 (421)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~--------------~-~iw--~~~~~~~~~~~~~~~v~  397 (421)
                      ++ .....+. +...+..+.++|+       ...+++++.++              . ++|  ..++......+|...|+
T Consensus       249 ~~-~~~~~~~-~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  319 (369)
T 3zwl_B          249 TL-QVLKKYE-TDCPLNTAVITPL-------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN  319 (369)
T ss_dssp             TC-CEEEEEE-CSSCEEEEEECSS-------SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CC-ceeeeec-CCCCceeEEecCC-------CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence            87 4455555 7788999999998       33788888777              4 666  33445556668899999


Q ss_pred             EEEEccCCCeEEEec-CCceEEEe
Q 014644          398 HLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       398 ~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +++|+|++++|++++ ++.+++|+
T Consensus       320 ~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          320 TVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEE
Confidence            999999999999998 56699997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-36  Score=274.04  Aligned_cols=283  Identities=15%  Similarity=0.153  Sum_probs=222.9

Q ss_pred             ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .||++.|++|+|  +|+ +++|+|||.|++|+|||+.+.+...                                     
T Consensus        35 ~GH~~~V~~v~~--sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------------------------------------   75 (340)
T 4aow_A           35 KGHNGWVTQIAT--TPQFPDMILSASRDKTIIMWKLTRDETNY-------------------------------------   75 (340)
T ss_dssp             CCCSSCEEEEEE--CTTCTTEEEEEETTSCEEEEEECCSSSCS-------------------------------------
T ss_pred             CCccCCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCCCccc-------------------------------------
Confidence            379999999999  676 6899999999999999998754100                                     


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        ..+.+.+ .+|...|.+++|+|++++|+++ .|+.|++|+.. ........       ..+.
T Consensus        76 ------------------~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-~~~~~~~~-------~~~~  128 (340)
T 4aow_A           76 ------------------GIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRF-------VGHT  128 (340)
T ss_dssp             ------------------EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-------ECCS
T ss_pred             ------------------ceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec-ccceeeee-------cCCC
Confidence                              1444556 8999999999999999999999 99999999998 44443332       4566


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEe
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR  265 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~  265 (421)
                      ..+..+.+++++ ..|++++.|+.+++||+......   ....             ..|...+..++|++++  .+++++
T Consensus       129 ~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          129 KDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY---TVQD-------------ESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             SCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE---EECS-------------SSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             CceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE---EEEe-------------ccccCcccceEEccCCCCcEEEEE
Confidence            788899999998 99999999999999998765422   1112             2347789999999875  466676


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. +.|++||+++ ++.+..+.+|...+               .+++|+|++++|++|+.||.|++||+++. .....+.
T Consensus       192 ~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~  254 (340)
T 4aow_A          192 GWDKLVKVWNLAN-CKLKTNHIGHTGYL---------------NTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLD  254 (340)
T ss_dssp             ETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEE
T ss_pred             cCCCEEEEEECCC-CceeeEecCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeec
Confidence            55 9999999986 88888888888765               79999999999999999999999999976 4455555


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc-----------cccccccccCeEEEEEccCCCeEEEec
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----------HELSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-----------~~~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                      . ...+..+.++|+  +      .+++++.|+. ++|+....           .....+|...|++++|+||+++||+|+
T Consensus       255 ~-~~~v~~~~~~~~--~------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          255 G-GDIINALCFSPN--R------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             C-SSCEEEEEECSS--S------SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             C-CceEEeeecCCC--C------ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            4 467888888876  2      4666777888 99943211           112336788999999999999999998


Q ss_pred             -CCceEEEeC
Q 014644          413 -GNSLFFHYA  421 (421)
Q Consensus       413 -~~~~~i~~~  421 (421)
                       ++.|+||++
T Consensus       326 ~Dg~v~iW~~  335 (340)
T 4aow_A          326 TDNLVRVWQV  335 (340)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCEEEEEeC
Confidence             556999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-37  Score=302.84  Aligned_cols=286  Identities=14%  Similarity=0.147  Sum_probs=222.1

Q ss_pred             ccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|++|+|  +++ +++|++|+.|++|+|||+.+....       .                              
T Consensus       379 ~~H~~~V~~v~~--~~~~~~~l~s~s~D~~i~~W~~~~~~~~-------~------------------------------  419 (694)
T 3dm0_A          379 RAHTDMVTAIAT--PIDNADIIVSASRDKSIILWKLTKDDKA-------Y------------------------------  419 (694)
T ss_dssp             ECCSSCEEEEEC--CTTCCSEEEEEETTSEEEEEECCCSTTC-------S------------------------------
T ss_pred             ccCCceeEEEEe--cCCCCCEEEEEeCCCcEEEEEccCCCcc-------c------------------------------
Confidence            379999999999  555 579999999999999998764200       0                              


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        ..+.+.+ .+|...|.+++|+|++++|++| .|++|++||+. .+...+.+       .+|.
T Consensus       420 ------------------~~~~~~~-~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~-~~~~~~~~-------~~h~  472 (694)
T 3dm0_A          420 ------------------GVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA-AGVSTRRF-------VGHT  472 (694)
T ss_dssp             ------------------CEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-------ECCS
T ss_pred             ------------------cccccee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC-CCcceeEE-------eCCC
Confidence                              0333445 7999999999999999999999 99999999998 55555544       7899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC--CEEEEe
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSR  265 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~  265 (421)
                      ..|.+++|+|++ .+|++++.|++|++||+......    .....          ..+|...|.+++|+|++  ..++++
T Consensus       473 ~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~----~~~~~----------~~~h~~~v~~~~~~~~~~~~~l~s~  537 (694)
T 3dm0_A          473 KDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY----TISEG----------GEGHRDWVSCVRFSPNTLQPTIVSA  537 (694)
T ss_dssp             SCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE----EECSS----------TTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             CCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce----eeccC----------CCCCCCcEEEEEEeCCCCcceEEEE
Confidence            999999999999 99999999999999998654321    11111          13457889999999987  578887


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. +.|++||++. .+....+.+|...+               .+++|+|++++|++|+.||.|++||+.++ .....+.
T Consensus       538 s~d~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~  600 (694)
T 3dm0_A          538 SWDKTVKVWNLSN-CKLRSTLAGHTGYV---------------STVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLE  600 (694)
T ss_dssp             ETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCB
T ss_pred             eCCCeEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEec
Confidence            65 9999999986 78888888888765               79999999999999999999999999987 4344443


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCcccCCCC--Ccccccc-------------------ccccCeEEEEEcc
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS--GHHELSY-------------------NLSSKLLHLAWHP  403 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~--~~~~~~~-------------------~~~~~v~~~~~sp  403 (421)
                       +...+..++|+|+  +.     .|+++..++.++|+..  .......                   .+...+++++|+|
T Consensus       601 -~~~~v~~~~~sp~--~~-----~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp  672 (694)
T 3dm0_A          601 -ANSVIHALCFSPN--RY-----WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA  672 (694)
T ss_dssp             -CSSCEEEEEECSS--SS-----EEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred             -CCCcEEEEEEcCC--Cc-----EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence             4567889999988  33     6666655555999332  2111111                   1112378999999


Q ss_pred             CCCeEEEec-CCceEEEeC
Q 014644          404 TTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       404 d~~~la~~~-~~~~~i~~~  421 (421)
                      ||++|++|+ ++.|++|+.
T Consensus       673 dg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          673 DGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             TSSEEEEEETTSEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEec
Confidence            999999998 566999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=294.67  Aligned_cols=333  Identities=11%  Similarity=0.031  Sum_probs=225.9

Q ss_pred             ccccccEEEEEEEEcCCC-------CeEEE-------------------EeCCCcEEEeecCCceeEE---eeecCCCCC
Q 014644           30 LEIEEKINRVRWCAAPNG-------SMFIL-------------------STNDKTIKLWKVRDQKVKK---IKEMDHFPF   80 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~-------~~l~t-------------------~s~d~~v~lwd~~~~~~~~---~~~~~~~~~   80 (421)
                      +.+...|.+|+|+|.+.+       ++||+                   ++.|++|+|||+.+++...   .....+.+.
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~  209 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE  209 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCS
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc
Confidence            446789999999876522       45555                   5578999999998765321   112234466


Q ss_pred             cccccccccccceeeccCCCCceeeeecccccccceeEEeecccce--------eeeeeeecCCCCcceEEEeecCCCCE
Q 014644           81 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--------ARCQKVYPHAHDFNINSISNNSDCET  152 (421)
Q Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~  152 (421)
                      |.+++|.+..      ...++...+++++.  ++.+++|++.....        ..+...+ .+|...|++++|++++ .
T Consensus       210 V~~v~wsp~~------~~~~~~~~LAs~s~--DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          210 VWDLKWHEGC------HAPHLVGCLSFVSQ--EGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEEECSSC------CCSSSSCEEEEEET--TSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSSS-E
T ss_pred             EEEEEECCCC------CCCCCCceEEEEec--CCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCCC-e
Confidence            6666666531      11123456666665  57899999876521        1233456 7899999999999864 7


Q ss_pred             EEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE--EEecCCCCeEEEEEcCCeEEEEECCcccccccchhh
Q 014644          153 FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  229 (421)
Q Consensus       153 l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  229 (421)
                      |++| .||+|++||++........       +.+|...|.++  .|+|++.++|++++.|++|++||+++++..    ..
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~  348 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KT  348 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CE
T ss_pred             EEEEeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cc
Confidence            8898 9999999999843333332       36899999999  567775478999999999999999986543    23


Q ss_pred             hccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee
Q 014644          230 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       230 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
                      +..|.           ....+.+++|+|+++.++++++ ++|++||+++ +..+..+.+|...+               .
T Consensus       349 ~~~~~-----------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~  401 (524)
T 2j04_B          349 TVSRF-----------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------T  401 (524)
T ss_dssp             EEEEC-----------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------E
T ss_pred             ccccc-----------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------E
Confidence            33320           0124789999999999998866 9999999986 77777888888765               8


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-----CCCCccceeeecCCcccccccceeeeecccCcccC--C
Q 014644          309 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S  381 (421)
Q Consensus       309 ~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~  381 (421)
                      +++|+|+|++|++|+.||+|++||+...  ....+..     +...+..++|+|+  +.     .+ .. .+..++|  .
T Consensus       402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~--g~-----~~-~~-~~~~~~~~~~  470 (524)
T 2j04_B          402 AIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIK--DD-----KY-RI-DSSYEVYPLT  470 (524)
T ss_dssp             EEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSS--SC-----EE-EE-CCCCCCCC--
T ss_pred             EEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCC--CC-----eE-Ec-cCCceecccc
Confidence            9999999999999999999999998643  2221111     1113557777776  22     23 22 2223444  3


Q ss_pred             -CCCccccccccccCeEEEEEccCCC---eEEEecC-CceEEEeC
Q 014644          382 -SSGHHELSYNLSSKLLHLAWHPTTN---LIACANG-NSLFFHYA  421 (421)
Q Consensus       382 -~~~~~~~~~~~~~~v~~~~~spd~~---~la~~~~-~~~~i~~~  421 (421)
                       .+..+..+.+|...|.+++|+|+++   +||+|+. +.++||+.
T Consensus       471 ~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          471 VNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             -----------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             cCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence             3556667778999999999999965   8999995 66999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-37  Score=273.59  Aligned_cols=239  Identities=17%  Similarity=0.208  Sum_probs=206.4

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|.+++|  ++++.++++++.|++|++||+.+++                                         
T Consensus        77 ~gh~~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~-----------------------------------------  113 (321)
T 3ow8_A           77 EGHQLGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGK-----------------------------------------  113 (321)
T ss_dssp             CCCSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTE-----------------------------------------
T ss_pred             ccCCCCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCC-----------------------------------------
Confidence            479999999999  7889999999999999999998764                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +++.+ ..|...+.+++|+|++++|+++ .|+.|++|+++.. +....+       ..|..
T Consensus       114 -------------------~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-~~~~~~-------~~~~~  165 (321)
T 3ow8_A          114 -------------------QIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-KKEYSL-------DTRGK  165 (321)
T ss_dssp             -------------------EEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-SEEEEE-------ECSSS
T ss_pred             -------------------EEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-ceeEEe-------cCCCc
Confidence                               12223 4667788899999999999999 9999999999844 333333       56778


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+|++ ++|++++.|+.|++||+++++..    ..+..             |...|.+++|+|++++|++++. 
T Consensus       166 ~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~~~~-------------h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          166 FILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HTLEG-------------HAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCCCEEEECTTSCEEEEECTT
T ss_pred             eEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEcc-------------cCCceeEEEEcCCCCEEEEEcCC
Confidence            89999999999 99999999999999999987643    33444             4788999999999999999976 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.|++||++. ++....+.+|...+               .+++|+|++++|++++.|+.|++||+.++ .....+.+|.
T Consensus       228 g~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~  290 (321)
T 3ow8_A          228 GYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQ  290 (321)
T ss_dssp             SCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCS
T ss_pred             CeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCC
Confidence            9999999986 78888888888765               79999999999999999999999999987 6778889999


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ..|..++|+++  +     ..|++++.|+. ++|+
T Consensus       291 ~~v~~v~~s~~--g-----~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          291 DQVWGVKYNGN--G-----SKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             SCEEEEEECTT--S-----SEEEEEETTCCEEEEE
T ss_pred             CcEEEEEECCC--C-----CEEEEEeCCCeEEEEe
Confidence            99999999998  3     38999999999 9994

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-36  Score=283.94  Aligned_cols=288  Identities=14%  Similarity=0.144  Sum_probs=205.6

Q ss_pred             cccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           31 EIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .|...|++|+|  +| ++++||+|+.||+|+|||+.+++..                                       
T Consensus       117 ~~~~~V~~l~~--~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------------------------  155 (435)
T 4e54_B          117 PFDRRATSLAW--HPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------------------------  155 (435)
T ss_dssp             ECSSCEEEEEE--CSSCTTCEEEEETTSCEEEECSSCCSCC---------------------------------------
T ss_pred             CCCCCEEEEEE--eCCCCCEEEEEeCCCEEEEEECCCCCce---------------------------------------
Confidence            57889999999  66 5779999999999999999875411                                       


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                         +...+ .+|.+.|++|+|+| ++++|+++ .|++|++||++ ... ...+.    ....+.
T Consensus       156 -------------------~~~~~-~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~-~~~~~----~~~~~~  209 (435)
T 4e54_B          156 -------------------TFIKG-IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNI-LRVFA----SSDTIN  209 (435)
T ss_dssp             -------------------EEECC-CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCE-EEEEE----CCSSCS
T ss_pred             -------------------eEEEc-cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCc-eeEEe----ccCCCC
Confidence                               11123 68999999999998 68999999 99999999998 333 22221    123445


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~  266 (421)
                      ..+.+++|+|++ .+|++|+.||.|++||++...     ...+..             |...|.+++|+|++. ++++++
T Consensus       210 ~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-----~~~~~~-------------h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          210 IWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-----LWNLRM-------------HKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             CCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-----CCCSBC-------------CSSCEEEEEECTTCSSEEEEEE
T ss_pred             ccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-----eEEEec-------------ccceEEeeeecCCCceEEEEec
Confidence            668899999999 999999999999999987532     133333             488999999999987 566776


Q ss_pred             C-CeEEEEECCCCCccee---EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          267 Y-MNLKLWDIRMDSTPVA---TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                      . +.|++||+++ .+...   ...+|...+               .+++|+|+|++|++++.||.|+|||+.++ .....
T Consensus       271 ~d~~v~iwd~~~-~~~~~~~~~~~~h~~~v---------------~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~  333 (435)
T 4e54_B          271 VDQTVKIWDLRQ-VRGKASFLYSLPHRHPV---------------NAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLG  333 (435)
T ss_dssp             TTSBCCEEETTT-CCSSSCCSBCCBCSSCE---------------EECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEE
T ss_pred             CcceeeEEeccc-ccccceEEEeeeccccc---------------cceeECCCCCeeEEEcCCCEEEEEECCCC-ccceE
Confidence            5 9999999986 33322   223455543               78999999999999999999999999987 44455


Q ss_pred             EecCCCC------ccceeeecCCccc----c-cccceeeeecccCc-ccCC--CCCccccc-cccccCeEEE-EEccCCC
Q 014644          343 VEAGKNE------NRKPILQAAPRAR----R-SSLSNLTRGLYRQA-HENS--SSGHHELS-YNLSSKLLHL-AWHPTTN  406 (421)
Q Consensus       343 ~~~~~~~------~~~~~~~~~~~~~----~-~~~~~l~~g~~d~~-~iw~--~~~~~~~~-~~~~~~v~~~-~~spd~~  406 (421)
                      +..|...      .....+.+.....    . .+...++.+..++. ++|+  .++.+... .+|...|.++ +|||+|+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~  413 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD  413 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence            5554422      1223344431000    0 00012222233344 7783  33344333 3577788887 6999999


Q ss_pred             eEEEecCCceEEEeC
Q 014644          407 LIACANGNSLFFHYA  421 (421)
Q Consensus       407 ~la~~~~~~~~i~~~  421 (421)
                      +||+|+++.|+||+.
T Consensus       414 ~lasg~d~~i~iW~~  428 (435)
T 4e54_B          414 TLASAMGYHILIWSQ  428 (435)
T ss_dssp             CEEEECSSEEEECCC
T ss_pred             EEEEEcCCcEEEEEC
Confidence            999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-36  Score=281.73  Aligned_cols=238  Identities=20%  Similarity=0.282  Sum_probs=208.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.+.|++++|  ++++++|++|+.|++|+|||+.+++                                          
T Consensus       148 ~h~~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~------------------------------------------  183 (410)
T 1vyh_C          148 GHTDSVQDISF--DHSGKLLASCSADMTIKLWDFQGFE------------------------------------------  183 (410)
T ss_dssp             CCSSCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSC------------------------------------------
T ss_pred             ccCCcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCc------------------------------------------
Confidence            69999999999  7899999999999999999987643                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        +++.+ .+|...|.+++|+|++++|++| .|++|++||++ .+.++..+       .+|...
T Consensus       184 ------------------~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~~-------~~h~~~  236 (410)
T 1vyh_C          184 ------------------CIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTF-------TGHREW  236 (410)
T ss_dssp             ------------------EEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSSC
T ss_pred             ------------------eeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEE-------eCCCcc
Confidence                              33445 7899999999999999999999 99999999998 55666554       689999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----------
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----------  258 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----------  258 (421)
                      |.++.|+|++ .+|++++.|++|++||++++...    ..+..             |...|.+++|+|+           
T Consensus       237 v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~  298 (410)
T 1vyh_C          237 VRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AELRE-------------HRHVVECISWAPESSYSSISEATG  298 (410)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             EEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eEecC-------------CCceEEEEEEcCcccccchhhhcc
Confidence            9999999999 99999999999999999886543    23333             4788999999996           


Q ss_pred             ---------CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644          259 ---------GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  328 (421)
Q Consensus       259 ---------~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i  328 (421)
                               |.+|++|+. +.|++||+++ +.++..+.+|...+               .+++|+|++++|++|+.||.|
T Consensus       299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          299 SETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEE
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCCeE
Confidence                     668998876 9999999987 88888999888765               799999999999999999999


Q ss_pred             EEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          329 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ++||+.++ .....+.+|...|.+++|+|+       ...|++|+.|+. ++|.
T Consensus       363 ~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~-------~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          363 RVWDYKNK-RCMKTLNAHEHFVTSLDFHKT-------APYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEECCTTS-CCCEEEECCSSCEEEEEECSS-------SSCEEEEETTSEEEEEC
T ss_pred             EEEECCCC-ceEEEEcCCCCcEEEEEEcCC-------CCEEEEEeCCCcEEEEe
Confidence            99999876 677889999999999999998       348999999999 9993

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.3e-36  Score=275.46  Aligned_cols=284  Identities=9%  Similarity=0.057  Sum_probs=227.4

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      |+++|++++|  +|++++|++++.|+.|++||+.+++.                                          
T Consensus         7 ~~~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~------------------------------------------   42 (372)
T 1k8k_C            7 LVEPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKW------------------------------------------   42 (372)
T ss_dssp             CSSCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEE------------------------------------------
T ss_pred             cCCCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcE------------------------------------------
Confidence            7899999999  79999999999999999999877541                                          


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                      +++..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++.....     .+..|...|
T Consensus        43 ----------------~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~-----~~~~~~~~v   99 (372)
T 1k8k_C           43 ----------------VQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAA   99 (372)
T ss_dssp             ----------------EEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCE
T ss_pred             ----------------Eeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-CCeeeeeE-----EeecCCCce
Confidence                            233445 6899999999999999999999 99999999998 44433332     235688999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      .+++|+|++ ++|++++.|+.|++||++.+.........             ...|...|.+++|+|++++|++++. +.
T Consensus       100 ~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~  165 (372)
T 1k8k_C          100 RCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI-------------KKPIRSTVLSLDWHPNSVLLAAGSCDFK  165 (372)
T ss_dssp             EEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE-------------CTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeee-------------ecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence            999999999 99999999999999999876421000111             1234778999999999999999875 99


Q ss_pred             EEEEECCC-----------------CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          270 LKLWDIRM-----------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       270 i~i~d~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      |++||++.                 .++.+..+..|...+               .+++|+|++++|++++.||.|++||
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV---------------HGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE---------------EEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             EEEEEcccccccccccccccccccchhhheEecCCCCCeE---------------EEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999641                 255666666666544               7999999999999999999999999


Q ss_pred             cCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC--c------------------------
Q 014644          333 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--H------------------------  385 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~--~------------------------  385 (421)
                      ++++ .....+..|..++..++|+|+       +.+|++| .|+. ++|+...  .                        
T Consensus       231 ~~~~-~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (372)
T 1k8k_C          231 ADKK-MAVATLASETLPLLAVTFITE-------SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER  301 (372)
T ss_dssp             GGGT-TEEEEEECSSCCEEEEEEEET-------TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred             CCCC-ceeEEEccCCCCeEEEEEecC-------CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence            9987 677888999999999999988       3377777 7777 9993322  0                        


Q ss_pred             ----------c------ccc-cccccCeEEEEEc-cCC---CeEEEec-CCceEEEe
Q 014644          386 ----------H------ELS-YNLSSKLLHLAWH-PTT---NLIACAN-GNSLFFHY  420 (421)
Q Consensus       386 ----------~------~~~-~~~~~~v~~~~~s-pd~---~~la~~~-~~~~~i~~  420 (421)
                                .      ... .+|...|++++|+ ++|   ++|++++ ++.+++|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          302 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             HHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             hhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence                      0      222 3889999999977 666   8999999 56699997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9e-36  Score=300.40  Aligned_cols=325  Identities=14%  Similarity=0.122  Sum_probs=256.3

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +|++.+|++++.||+|+|||+.+++...... .+..+|.++            .+++++.+++.++
T Consensus        10 ~~h~~~v~~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~------------~~s~~~~~l~~~~   74 (814)
T 3mkq_A           10 SNRSDRVKGIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAG------------KFIARKNWIIVGS   74 (814)
T ss_dssp             EEECSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEE------------EEEGGGTEEEEEE
T ss_pred             ecCCCceEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEE------------EEeCCCCEEEEEe
Confidence            368999999999  7999999999999999999999887333222 344544444            4445555566655


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|+..++   +++..+ .+|.+.|++++|+|++++|+++ .|++|++||++........+       .+|..
T Consensus        75 ~--dg~i~vw~~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-------~~~~~  141 (814)
T 3mkq_A           75 D--DFRIRVFNYNTG---EKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-------EGHEH  141 (814)
T ss_dssp             T--TSEEEEEETTTC---CEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-------ECCSS
T ss_pred             C--CCeEEEEECCCC---cEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-------cCCCC
Confidence            4  668999999887   778888 8999999999999999999999 99999999998544555544       67899


Q ss_pred             CeeEEEEec-CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC--CCCEEEEe
Q 014644          189 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSR  265 (421)
Q Consensus       189 ~v~~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~  265 (421)
                      .|.+++|+| ++ ..|++++.||.|++||+..+...    ..+..            .+...+..++|+|  ++.+|+++
T Consensus       142 ~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          142 FVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             CEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCCCEEEECCSTTCCEEEEE
T ss_pred             cEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec------------CCCCCEEEEEEEECCCCCEEEEE
Confidence            999999999 66 89999999999999999876532    22222            1246899999999  99999998


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. +.|++||+++ ++.+..+.+|...+               .+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus       205 ~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~  267 (814)
T 3mkq_A          205 SDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN  267 (814)
T ss_dssp             CTTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred             eCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee
Confidence            76 9999999986 88888888887654               79999999999999999999999999987 6788889


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCcccCCCCC------------cc--------------------------
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSG------------HH--------------------------  386 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~------------~~--------------------------  386 (421)
                      .|...+..++++|+.  .   ..+++++..++..+|....            .+                          
T Consensus       268 ~~~~~v~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (814)
T 3mkq_A          268 VGLERSWCIATHPTG--R---KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD  342 (814)
T ss_dssp             CSSSSEEEEEECTTC--G---GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred             cCCCcEEEEEEccCC--C---ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence            999999999999882  2   1146666655544441110            00                          


Q ss_pred             -------ccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          387 -------ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       387 -------~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                             .....+...+.+++|+|+|++|++++++.+.+|+.
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~  384 (814)
T 3mkq_A          343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTA  384 (814)
T ss_dssp             SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEET
T ss_pred             ccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEEC
Confidence                   00122344678999999999999999999999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-35  Score=263.09  Aligned_cols=249  Identities=15%  Similarity=0.184  Sum_probs=192.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  ++++++||+|+.|++|+|||+.+...                                        
T Consensus         6 ~~h~~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~----------------------------------------   43 (297)
T 2pm7_B            6 NAHNEMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETH----------------------------------------   43 (297)
T ss_dssp             CSCSSCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCB----------------------------------------
T ss_pred             cCCcCceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCc----------------------------------------
Confidence            479999999999  79999999999999999999875320                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDD  185 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~  185 (421)
                                        +++..+ .+|.+.|.+++|+++  +++|++| .|++|++||++... .....       +.+
T Consensus        44 ------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-------~~~   97 (297)
T 2pm7_B           44 ------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV-------HAV   97 (297)
T ss_dssp             ------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE-------ECC
T ss_pred             ------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE-------eec
Confidence                              333455 799999999999864  8999999 99999999998332 12222       367


Q ss_pred             cCCCeeEEEEecC--CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----
Q 014644          186 LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----  258 (421)
Q Consensus       186 ~~~~v~~~~~~p~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----  258 (421)
                      |...|.+++|+|+  + .+|++++.|++|++||++.+....  ...             +..|...|.+++|+|+     
T Consensus        98 h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~-------------~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           98 HSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII-------------IDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             CSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE-------------EECCSSCEEEEEECCCC----
T ss_pred             CCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee-------------eecccCccceEeecCCccccc
Confidence            8999999999997  6 899999999999999998753210  112             2345789999999997     


Q ss_pred             --------CCEEEEecC-CeEEEEECCCCCc----ceeEEeeccCcccccccccCCCcceeeeEEEEcCCC---CEEEEe
Q 014644          259 --------GQHLLSRDY-MNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATG  322 (421)
Q Consensus       259 --------~~~l~~~~~-~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~l~~~  322 (421)
                              +++|++++. +.|++||++. +.    ....+.+|...+               .+++|+|++   ++|+++
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEEEECCCCSSSEEEEEE
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEEEECCCCCCceEEEEE
Confidence                    568998865 9999999976 43    455677887765               899999984   899999


Q ss_pred             eCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEc
Q 014644          323 SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH  402 (421)
Q Consensus       323 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~s  402 (421)
                      +.|++|+|||+++.......          ..                                .....|...|.+++|+
T Consensus       226 s~D~~v~iWd~~~~~~~~~~----------~~--------------------------------~~~~~~~~~v~~~~~s  263 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKK----------TL--------------------------------LKEEKFPDVLWRASWS  263 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEE----------EE--------------------------------SSSSCCSSCEEEEEEC
T ss_pred             ECCCcEEEEEeCCCCCccce----------ee--------------------------------eecccCCCcEEEEEEC
Confidence            99999999998764211000          00                                0001345678899999


Q ss_pred             cCCCeEEEec-CCceEEEe
Q 014644          403 PTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       403 pd~~~la~~~-~~~~~i~~  420 (421)
                      |++++||+++ ++.++||+
T Consensus       264 ~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          264 LSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             SSSCCEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEE
Confidence            9999999887 55689986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-35  Score=271.48  Aligned_cols=280  Identities=13%  Similarity=0.130  Sum_probs=214.7

Q ss_pred             ccccccEEEEEEEEcCCC-CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~-~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...|++++|  ++++ ++|++|+.|++|+|||+.+++....                                    
T Consensus        70 ~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------  111 (383)
T 3ei3_B           70 SPFDRRVTSLEW--HPTHPTTVAVGSKGGDIILWDYDVQNKTSF------------------------------------  111 (383)
T ss_dssp             CCCSSCEEEEEE--CSSCTTEEEEEEBTSCEEEEETTSTTCEEE------------------------------------
T ss_pred             cCCCCCEEEEEE--CCCCCCEEEEEcCCCeEEEEeCCCccccee------------------------------------
Confidence            478999999999  6887 8999999999999999987542111                                    


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                            ... .+|...|.+++|+| ++++|+++ .|+.|++||++ + .....+.    ....|
T Consensus       112 ----------------------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~~~----~~~~~  162 (383)
T 3ei3_B          112 ----------------------IQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-G-SVIQVFA----KTDSW  162 (383)
T ss_dssp             ----------------------ECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-S-CEEEEEE----CCCCS
T ss_pred             ----------------------eec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-C-CceEEEe----ccCCC
Confidence                                  111 47999999999999 78999998 99999999998 3 3333331    22446


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEe
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR  265 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~  265 (421)
                      ...|.+++|+|++ .+|++++.|+.|++||++.. ..    ..+..             |...|.+++|+|+++ +++++
T Consensus       163 ~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~----~~~~~-------------h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          163 DYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGH-EI----FKEKL-------------HKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             SCCEEEEEEETTT-TEEEEEETTSEEEEEETTSC-EE----EEEEC-------------SSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCeEEEEECCCC-CEEEEECCCCCEEEEECCCC-EE----EEecc-------------CCCcEEEEEECCCCCCEEEEE
Confidence            6889999999999 99999999999999999532 11    33333             478999999999999 88888


Q ss_pred             cC-CeEEEEECCCC---CcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCce
Q 014644          266 DY-MNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       266 ~~-~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      +. +.|++||+++.   +..+..+ .|...+               .+++|+| ++++|++++.|+.|++||++++ ...
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v---------------~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~  286 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPV---------------NAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKP  286 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCE---------------EEEEECTTTSCEEEEEESSSEEEEEETTBT-TSC
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe-cCCCce---------------EEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccc
Confidence            65 99999999852   3344444 565544               7999999 9999999999999999999987 444


Q ss_pred             eEEecCC-------CCccc----------eeeecCCcccccccceeeeecccCc-ccCC--CCCccccccc--cccCeEE
Q 014644          341 ITVEAGK-------NENRK----------PILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYN--LSSKLLH  398 (421)
Q Consensus       341 ~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~--~~~~v~~  398 (421)
                      ..+.+|.       ..+..          ++++++  ++     +  +|+.|+. ++|+  .++.+....+  +...+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d--g~-----~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD--DQ-----L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL  357 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC--TT-----T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCC--cc-----c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence            5555443       33332          334443  22     2  7888999 9993  4455555544  4567888


Q ss_pred             EEEccCCCeEEEecCCceEEEeC
Q 014644          399 LAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       399 ~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      ++|+|++++||+++++.|+||+.
T Consensus       358 ~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          358 NKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             EEECTTSSEEEEEETTEEEEEEC
T ss_pred             EEEecCccEEEEecCCcEEEEec
Confidence            89999999999999889999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-35  Score=271.02  Aligned_cols=289  Identities=14%  Similarity=0.117  Sum_probs=223.0

Q ss_pred             ccccccEEEEEEEEc--CCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           30 LEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~--~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      .+|.++|++++|+|.  .....+++++.++.|++||+.+++ ...+..                                
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------------------------   62 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------------------------   62 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------------------------
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------------------------
Confidence            379999999999432  135667778888899999998765 221111                                


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC----CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  181 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~  181 (421)
                                               .....|...|.+++|+|+    +++|+++ .|+.|++||+. .++.+..+     
T Consensus        63 -------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~-----  111 (366)
T 3k26_A           63 -------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI-TMQCIKHY-----  111 (366)
T ss_dssp             -------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT-TCCEEEEE-----
T ss_pred             -------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch-hceEeeee-----
Confidence                                     001357889999999998    6789998 99999999998 45555544     


Q ss_pred             CCCccCCCeeEEEEec-CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          182 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                        .+|...|.+++|+| ++ .+|++++.||.|++||+++++..    ..+..          +..|...|.+++|+|+++
T Consensus       112 --~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~----------~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A          112 --VGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLV----AIFGG----------VEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             --ESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEE----EEECS----------TTSCSSCEEEEEECTTSS
T ss_pred             --cCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEE----EEecc----------cccccCceeEEEECCCCC
Confidence              67999999999999 77 99999999999999999987543    22211          123478999999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEee----------------------------ccCcccccccccCCCcceeeeEEE
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKI----------------------------HEHLRPKLCDLYNNDSIFDKFECS  311 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +|++++. +.|++||+++ ++....+..                            |...               +.+++
T Consensus       175 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~  238 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY---------------VDCVR  238 (366)
T ss_dssp             EEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC---------------CCEEE
T ss_pred             EEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcce---------------EEEEE
Confidence            9999876 9999999985 444332221                            3332               27899


Q ss_pred             EcCCCCEEEEeeCCCeEEEEecCCCCC-------------ceeEEecCCCCccceeeecCCcccccccceeeeecccCc-
Q 014644          312 VSGDGLHFATGSYSNLLRIFSHGVGSA-------------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-  377 (421)
Q Consensus       312 ~sp~~~~l~~~s~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-  377 (421)
                      |+  +++|++++.||.|++||+.+...             ....+.+|...+..++|+|+..+.     +|++|+.|+. 
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----~l~~~~~dg~i  311 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-----MLALGNQVGKL  311 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-----EEEEECTTSCE
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-----EEEEEecCCcE
Confidence            98  77999999999999999987632             266778899999999999884444     8999999999 


Q ss_pred             ccCCCC--Ccc----cccccc--ccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          378 HENSSS--GHH----ELSYNL--SSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       378 ~iw~~~--~~~----~~~~~~--~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ++|+..  +..    ....+|  ...|++++|+|++++|++++ ++.+++|+.
T Consensus       312 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          312 YVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            999332  222    234455  68999999999999999998 557999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.3e-35  Score=308.30  Aligned_cols=294  Identities=14%  Similarity=0.137  Sum_probs=232.7

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      ..+|.+.|++++|  +|+++++++|+.||+|++||+.+++...... .|..            .+.++.+++++.+++.+
T Consensus       611 ~~~h~~~v~~~~~--s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~------------~v~~~~~s~~~~~l~s~  675 (1249)
T 3sfz_A          611 VRPHTDAVYHACF--SQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHED------------EVLCCAFSSDDSYIATC  675 (1249)
T ss_dssp             ECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSS------------CEEEEEECTTSSEEEEE
T ss_pred             EecccccEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCC------------CEEEEEEecCCCEEEEE
Confidence            3479999999999  7999999999999999999999887322211 2434            55666666777777777


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      +.  ++.+++|+..++   +++..+ .+|...|.+++|+|  ++.+++++ .|+.|++||++ .+.+...+       .+
T Consensus       676 ~~--d~~v~vwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~-------~~  741 (1249)
T 3sfz_A          676 SA--DKKVKIWDSATG---KLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTM-------FG  741 (1249)
T ss_dssp             ET--TSEEEEEETTTC---CEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEE-------CC
T ss_pred             eC--CCeEEEEECCCC---ceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccchhhee-------cC
Confidence            65  568999999987   888888 89999999999999  55688888 99999999998 55555544       78


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...|.+++|+|++ ..|++++.||.|++||++++...    ..+...................+.+++|+|+|+.++++
T Consensus       742 h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  816 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANER----KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA  816 (1249)
T ss_dssp             CSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEE----EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred             CCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCccc----ceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence            99999999999999 99999999999999999886543    11111000000000112224578899999999999999


Q ss_pred             cCCeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +++.+.+||+.+ +.....+. +|...+               .+++|+|+++++++++.||.|++||+.++ .....+.
T Consensus       817 ~~~~v~~~d~~~-~~~~~~~~~~~~~~v---------------~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~  879 (1249)
T 3sfz_A          817 AKNKVLLFDIHT-SGLLAEIHTGHHSTI---------------QYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCR  879 (1249)
T ss_dssp             ETTEEEEEETTT-CCEEEEEECSSSSCC---------------CEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEEC
T ss_pred             cCCcEEEEEecC-CCceeEEcCCCCCce---------------EEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecC
Confidence            889999999987 55555554 555544               79999999999999999999999999987 6778889


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      +|...+..++|+|+  +     ..|++++.|+. ++|
T Consensus       880 ~h~~~v~~v~~spd--g-----~~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          880 GHLSWVHGVMFSPD--G-----SSFLTASDDQTIRVW  909 (1249)
T ss_dssp             CCSSCEEEEEECTT--S-----SEEEEEETTSCEEEE
T ss_pred             CCccceEEEEECCC--C-----CEEEEEeCCCeEEEE
Confidence            99999999999998  3     37888888888 888

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-34  Score=282.02  Aligned_cols=338  Identities=10%  Similarity=0.056  Sum_probs=253.9

Q ss_pred             cccccc-EEEEEEEEcC--CCCeEEEEeCCCcEEEeecCCc------eeEEeeec-CCCCCcccccccccccceeeccCC
Q 014644           30 LEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        30 ~~h~~~-V~~v~~~~~~--~~~~l~t~s~d~~v~lwd~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      .+|.+. |++++|  +|  ++++|++++.||+|++||+.++      +....... .+..            .+.++.++
T Consensus        60 ~~h~~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s  125 (615)
T 1pgu_A           60 TGHGSSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG------------PISDISWD  125 (615)
T ss_dssp             CTTTTSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS------------CEEEEEEC
T ss_pred             ecCCCceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc------------cEEEEEEe
Confidence            468999 999999  68  9999999999999999999765      32222222 2333            45566666


Q ss_pred             CCceeeeecccccc--cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeee
Q 014644          100 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI  175 (421)
Q Consensus       100 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~  175 (421)
                      +++.+++.++.+..  ..+.+|+  ..   +++..+ .+|...|.+++|+|+++ .++++ .|+.|++||+. ..+....
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d--~~---~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~  198 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWD--SG---NSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS  198 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETT--TC---CEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred             CCCCEEEEeccCCCCccEEEEEE--CC---Ccceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence            67776666665333  4677777  33   566777 89999999999999998 78888 99999999998 5555554


Q ss_pred             eecCCCCCCccCC---CeeEEEEecC-CCCeEEEEEcCCeEEEEECCcccccccchhhh-ccccccCCCcccccccccce
Q 014644          176 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       176 ~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v  250 (421)
                      +       .+|..   .|.+++|+|+ + .+|++++.|+.|++||+++++..    ..+ ..          ...|...|
T Consensus       199 ~-------~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v  256 (615)
T 1pgu_A          199 D-------RTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGI  256 (615)
T ss_dssp             E-------CSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCE
T ss_pred             e-------cccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCce
Confidence            4       67888   9999999999 8 99999999999999999887643    222 20          00347889


Q ss_pred             eEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeec-----------------------------------------
Q 014644          251 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH-----------------------------------------  288 (421)
Q Consensus       251 ~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~-----------------------------------------  288 (421)
                      .+++|+ ++++|++++. +.|++||+++ ++.+..+..+                                         
T Consensus       257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  334 (615)
T 1pgu_A          257 FALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT  334 (615)
T ss_dssp             EEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred             EEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE
Confidence            999999 9999998875 9999999875 4443333322                                         


Q ss_pred             ----cCcccccc--------------------------------------------------------------------
Q 014644          289 ----EHLRPKLC--------------------------------------------------------------------  296 (421)
Q Consensus       289 ----~~~~~~~~--------------------------------------------------------------------  296 (421)
                          ...+..++                                                                    
T Consensus       335 ~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  414 (615)
T 1pgu_A          335 ISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA  414 (615)
T ss_dssp             ECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred             EeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence                10000000                                                                    


Q ss_pred             ---------------------------------------------------c---------------ccCCCcceeeeEE
Q 014644          297 ---------------------------------------------------D---------------LYNNDSIFDKFEC  310 (421)
Q Consensus       297 ---------------------------------------------------~---------------~~~~~~~~~~~~~  310 (421)
                                                                         .               ..-......+.++
T Consensus       415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~  494 (615)
T 1pgu_A          415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  494 (615)
T ss_dssp             CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence                                                               0               0000001125789


Q ss_pred             EEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-CCCCccceeeec----------CCcccccccceeeeecccCc-c
Q 014644          311 SVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQA----------APRARRSSLSNLTRGLYRQA-H  378 (421)
Q Consensus       311 ~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~l~~g~~d~~-~  378 (421)
                      +|+|++++|++++.||.|++||+.++ .....+.+ |...+..++|+|          +       ..+|++++.|+. +
T Consensus       495 ~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~-------~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          495 SISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIE-------EDLVATGSLDTNIF  566 (615)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCS-------CCEEEEEETTSCEE
T ss_pred             EECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccC-------CCEEEEEcCCCcEE
Confidence            99999999999999999999999987 55666676 999999999999          6       348999999999 9


Q ss_pred             cCCC--C-CccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          379 ENSS--S-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       379 iw~~--~-~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      +|+.  + .......+|...|++++|+|+++ |++++ ++.+++|+.
T Consensus       567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            9933  2 45566778999999999999999 88887 566999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.8e-36  Score=274.94  Aligned_cols=293  Identities=9%  Similarity=0.084  Sum_probs=228.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  ++  ++|++|+.||+|++||+.+++...       .                              
T Consensus        13 ~~h~~~i~~~~~--~~--~~l~s~~~dg~i~iw~~~~~~~~~-------~------------------------------   51 (397)
T 1sq9_A           13 KAHDADIFSVSA--CN--SFTVSCSGDGYLKVWDNKLLDNEN-------P------------------------------   51 (397)
T ss_dssp             SCSSSCEEEEEE--CS--SEEEEEETTSEEEEEESBCCTTCC-------G------------------------------
T ss_pred             hhhhcCeEEEEe--cC--CeEEEEcCCCEEEEEECCCccccc-------C------------------------------
Confidence            379999999999  55  899999999999999998754100       0                              


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC----C---CEEEEE-cCCcEEEEeCCCCcee-----eeee
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----C---ETFVSA-DDLRINLWNLEISDQC-----FNIV  176 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~---~~l~s~-~d~~i~lwd~~~~~~~-----~~~~  176 (421)
                                       ..++..+ .+|...|.+++|+|+    +   ++|+++ .|+.|++||+.. .+.     ...+
T Consensus        52 -----------------~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~  112 (397)
T 1sq9_A           52 -----------------KDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR-EDETKKVIFEKL  112 (397)
T ss_dssp             -----------------GGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE-CTTTCCEEEEEE
T ss_pred             -----------------CCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC-Ccccccccceee
Confidence                             0334445 689999999999999    9   999998 999999999983 332     3333


Q ss_pred             ecCCCCCCcc-----CCCeeEEEEe----cCCCCe-EEEEEcCCeEEEEECCc------ccccc-cchhhhccccccCCC
Q 014644          177 DMKPSNMDDL-----TEVITSAEFH----PIYCNL-LAYSSSRGFVRLVDMRQ------SALCD-HSARILRDAAESHGS  239 (421)
Q Consensus       177 ~~~~~~~~~~-----~~~v~~~~~~----p~~~~~-l~s~~~d~~v~iwd~~~------~~~~~-~~~~~~~~h~~~~~~  239 (421)
                             ..|     ...|.+++|+    |++ .. |++++.||.|++||++.      +.... .....+..      .
T Consensus       113 -------~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~  178 (397)
T 1sq9_A          113 -------DLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG------T  178 (397)
T ss_dssp             -------CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE------E
T ss_pred             -------cccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee------e
Confidence                   556     5899999999    998 88 99999999999999987      43221 00001110      0


Q ss_pred             cccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEee---c---cCcccccccccCCCcceeeeEEEE
Q 014644          240 KSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI---H---EHLRPKLCDLYNNDSIFDKFECSV  312 (421)
Q Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~  312 (421)
                      ......|...+.+++|+|++ ++++++. +.|++||+++ ++++..+..   |   ...+               .+++|
T Consensus       179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i---------------~~i~~  241 (397)
T 1sq9_A          179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI---------------RSVKF  241 (397)
T ss_dssp             ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE---------------EEEEE
T ss_pred             eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc---------------ceEEE
Confidence            00012357789999999999 9998876 9999999986 888888887   6   5543               79999


Q ss_pred             cCCCCEEEEeeCC---CeEEEEecCCCCCceeEEec-------------CCCCccceeeecCCcccccccceeeeecccC
Q 014644          313 SGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEA-------------GKNENRKPILQAAPRARRSSLSNLTRGLYRQ  376 (421)
Q Consensus       313 sp~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~  376 (421)
                      +|++++|++++.|   |.|++||+.++ .....+.+             |...+..+.|+|+       ..+|++++.|+
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg  313 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-------GETLCSAGWDG  313 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSS-------SSEEEEEETTS
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCC-------CCEEEEEeCCC
Confidence            9999999999999   99999999987 66777888             9999999999998       33899999999


Q ss_pred             c-ccCC--CCCcccccc------cc---------------ccCeEEEEEccCC----------CeEEEec-CCceEEEeC
Q 014644          377 A-HENS--SSGHHELSY------NL---------------SSKLLHLAWHPTT----------NLIACAN-GNSLFFHYA  421 (421)
Q Consensus       377 ~-~iw~--~~~~~~~~~------~~---------------~~~v~~~~~spd~----------~~la~~~-~~~~~i~~~  421 (421)
                      . ++|+  .++.+....      +|               ...|++++|+|++          ++|++++ ++.+++|+.
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            9 9993  344444444      56               8899999999998          7899888 667999973

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-35  Score=294.81  Aligned_cols=348  Identities=9%  Similarity=0.073  Sum_probs=236.6

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeee----------cCCCCCcccccccccccceeec
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE----------MDHFPFVSSENTLLAEKNFMNE   96 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~   96 (421)
                      +..+.|...|++++|  +|++++|++|+.||+|++||+.++++.....          ..|.++|.+++|++.+.     
T Consensus        92 ~~~~~~~~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-----  164 (902)
T 2oaj_A           92 LTTVFVPGKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-----  164 (902)
T ss_dssp             EEEEECSSCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-----
T ss_pred             EEEEcCCCCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC-----
Confidence            344567889999999  7999999999999999999999887432211          22445555555554322     


Q ss_pred             cCCCCceeeeecccccccceeEEeecccceeeeeeeecCCC------------------CcceEEEeecCCCCEEEEE-c
Q 014644           97 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------------------DFNINSISNNSDCETFVSA-D  157 (421)
Q Consensus        97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~l~s~-~  157 (421)
                            ..++.|..  ++.+ +||+...   ++++.+ ..|                  ...|++++|+|+|++|+++ .
T Consensus       165 ------~~l~~g~~--dg~v-lWd~~~~---~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          165 ------GTVLISYE--YVTL-TYSLVEN---EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             ------EEEEEECS--SCEE-EEETTTT---EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             ------CEEEEEeC--CCcE-EEECCCC---ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence                  23333332  4578 9999887   666666 444                  5789999999999999999 9


Q ss_pred             CCcEEEEeCCCCceeeeeeecCCCCCC-----------ccCCCeeEEEEec----CCCCeEEEEEcC-----CeEEEEEC
Q 014644          158 DLRINLWNLEISDQCFNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAYSSSR-----GFVRLVDM  217 (421)
Q Consensus       158 d~~i~lwd~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~p----~~~~~l~s~~~d-----~~v~iwd~  217 (421)
                      |++|++||+++ ++++....+......           .|...|.+++|++    ++..+|++++.|     ..+++|++
T Consensus       232 Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          232 DNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             TCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            99999999984 444432111000000           2455788999954    332456666554     25666663


Q ss_pred             Cc---------------------cccc-----------------------------------ccchhhhcccccc-----
Q 014644          218 RQ---------------------SALC-----------------------------------DHSARILRDAAES-----  236 (421)
Q Consensus       218 ~~---------------------~~~~-----------------------------------~~~~~~~~~h~~~-----  236 (421)
                      ..                     .+..                                   +..++.++. ..+     
T Consensus       311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~-~~g~~~~~  389 (902)
T 2oaj_A          311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY-PSGIFTDK  389 (902)
T ss_dssp             EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET-TTCCEECC
T ss_pred             CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC-CCCCcccc
Confidence            10                     0000                                   000011110 000     


Q ss_pred             -----------------------------------CCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc
Q 014644          237 -----------------------------------HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  280 (421)
Q Consensus       237 -----------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~  280 (421)
                                                         ......+.+|...+..++|+|++++|++|+. ++|++||+.. +.
T Consensus       390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~  468 (902)
T 2oaj_A          390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GD  468 (902)
T ss_dssp             GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CT
T ss_pred             cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-cc
Confidence                                               0011123455556667778899999999976 9999999976 43


Q ss_pred             ce--eEEe---------eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC------------
Q 014644          281 PV--ATFK---------IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS------------  337 (421)
Q Consensus       281 ~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~------------  337 (421)
                      ..  ..+.         +|...               |.+++|+|++++||+|+.||+|+|||+.++.            
T Consensus       469 ~~~~~~~~~~l~~~~~~~h~~~---------------V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~  533 (902)
T 2oaj_A          469 IQDNASFEVNLSRTLNKAKELA---------------VDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGD  533 (902)
T ss_dssp             TTTTBCEEEEHHHHTTCSSSCC---------------EEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----------
T ss_pred             ccCCceEEeechhhcCCCCCCc---------------eeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcc
Confidence            21  1111         33332               3899999999999999999999999998652            


Q ss_pred             --------------------------------CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC
Q 014644          338 --------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG  384 (421)
Q Consensus       338 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~  384 (421)
                                                      .....+.+|.++|.+++|+|+       + +||+|+.|+. ++|+...
T Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd-------G-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          534 LEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI-------G-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             ----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT-------S-EEEEEETTSEEEEEETTT
T ss_pred             cceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC-------c-EEEEEeCCCcEEEEECCC
Confidence                                            125678899999999999999       6 8999999999 9995443


Q ss_pred             cc-------cccc-ccccCeEEEEEc-----cCC---CeEEEec-CCceEEEe
Q 014644          385 HH-------ELSY-NLSSKLLHLAWH-----PTT---NLIACAN-GNSLFFHY  420 (421)
Q Consensus       385 ~~-------~~~~-~~~~~v~~~~~s-----pd~---~~la~~~-~~~~~i~~  420 (421)
                      ..       .... +|...|++++|+     |||   ++|++|+ ++.+++|+
T Consensus       606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            21       1232 788999999999     886   7999998 56699997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-36  Score=278.57  Aligned_cols=287  Identities=11%  Similarity=0.098  Sum_probs=211.5

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      |.++|++++|  +|++++|++|+.|++|+|||+.++..                                          
T Consensus        10 ~~~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~------------------------------------------   45 (377)
T 3dwl_C           10 LPKPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGW------------------------------------------   45 (377)
T ss_dssp             CSSCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEE------------------------------------------
T ss_pred             CCCcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCce------------------------------------------
Confidence            4678999999  78999999999999999999887531                                          


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                      +++..+ .+|...|.+++|+|++++|+++ .|++|++||+..........     .+.+|...|
T Consensus        46 ----------------~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~v  103 (377)
T 3dwl_C           46 ----------------KHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL-----VLLRLNRAA  103 (377)
T ss_dssp             ----------------EECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE-----ECCCCSSCE
T ss_pred             ----------------EEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee-----EecccCCce
Confidence                            222334 7899999999999999999999 99999999998433111111     236799999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      .+++|+|++ ++|++++.|+.|++||++.++... ....+..            .|...|.+++|+|++++|++++. +.
T Consensus       104 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~------------~h~~~v~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C          104 TFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW-VSKHLKR------------PLRSTILSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             EEEECCTTS-SCCEEEESSSCEEECCC-----CC-CCEEECS------------SCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred             EEEEECCCC-CEEEEEecCCeEEEEEECCcccce-eeeEeec------------ccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence            999999999 999999999999999998864210 0111211            15789999999999999999876 99


Q ss_pred             EEEEECCCC-----------------CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          270 LKLWDIRMD-----------------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       270 i~i~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      |++||++..                 ++++..+ .|...+               .+++|+|++++|++++.||.|++||
T Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v---------------~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV---------------HAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE---------------EEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE---------------EEEEECCCCCEEEEEeCCCcEEEEE
Confidence            999998531                 2223333 444433               7999999999999999999999999


Q ss_pred             cCCCCCc---eeEEecCCCCccceeeecCCcccccccceeeeecccCcccC-CC-CC-----ccc---------------
Q 014644          333 HGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SS-SG-----HHE---------------  387 (421)
Q Consensus       333 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw-~~-~~-----~~~---------------  387 (421)
                      +.++...   ...+.+|..++..++|+|+  +     .+|++|+.++..+| .. .+     .+.               
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T 3dwl_C          234 PSAPEQPPRALITVKLSQLPLRSLLWANE--S-----AIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTG  306 (377)
T ss_dssp             ECSTTSCEEECCCEECSSSCEEEEEEEET--T-----EEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBC
T ss_pred             CCCCCCcceeeEeecCCCCceEEEEEcCC--C-----CEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccc
Confidence            9987431   6788999999999999998  3     48999988877544 22 10     000               


Q ss_pred             --------------------------------cccccccCeEEEEEccCCC----eEEEec-CCceEEEeC
Q 014644          388 --------------------------------LSYNLSSKLLHLAWHPTTN----LIACAN-GNSLFFHYA  421 (421)
Q Consensus       388 --------------------------------~~~~~~~~v~~~~~spd~~----~la~~~-~~~~~i~~~  421 (421)
                                                      ....|...|+++++.+...    .|++++ ++.|++|+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                            0012888999999877653    477777 677999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=269.10  Aligned_cols=284  Identities=12%  Similarity=0.092  Sum_probs=218.2

Q ss_pred             ccccccEEEEEEEEcCCCCeE-EEEeC---CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           30 LEIEEKINRVRWCAAPNGSMF-ILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l-~t~s~---d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      .+|.+.|++++|  +|++..+ ++|+.   |++|+|||+.+++....                                 
T Consensus        15 ~~h~~~v~~~~~--~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~---------------------------------   59 (357)
T 3i2n_A           15 KGFNYTVFDCKW--VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL---------------------------------   59 (357)
T ss_dssp             EECSSCEEEEEE--CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE---------------------------------
T ss_pred             cCCCCceEEEEE--cCCCceEEEecCccCCCcEEEEEeCCCCcccce---------------------------------
Confidence            469999999999  7887655 55655   99999999987652211                                 


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC---CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  181 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~  181 (421)
                                               ..  .+|...|.+++|+|+   +++|+++ .|+.|++||+.........+     
T Consensus        60 -------------------------~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----  107 (357)
T 3i2n_A           60 -------------------------RE--IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-----  107 (357)
T ss_dssp             -------------------------EE--EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-----
T ss_pred             -------------------------ee--ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-----
Confidence                                     11  368889999999998   6999998 99999999998444255444     


Q ss_pred             CCCccCCCeeEEEE------ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE-
Q 014644          182 NMDDLTEVITSAEF------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK-  254 (421)
Q Consensus       182 ~~~~~~~~v~~~~~------~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~-  254 (421)
                        .+|...|.+++|      +|++ .+|++++.|+.|++||++++...   ...+..|.         ..+...+.+++ 
T Consensus       108 --~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~---------~~~~~~v~~~~~  172 (357)
T 3i2n_A          108 --KGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDP---VANMEPVQ---------GENKRDCWTVAF  172 (357)
T ss_dssp             --CCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSC---SEEECCCT---------TSCCCCEEEEEE
T ss_pred             --EecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCc---ceeccccC---------CCCCCceEEEEE
Confidence              789999999965      6788 89999999999999999986522   12332210         01134788888 


Q ss_pred             ---EcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC---CCCEEEEeeCCCe
Q 014644          255 ---FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNL  327 (421)
Q Consensus       255 ---~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~l~~~s~dg~  327 (421)
                         |+|+++++++++. +.|++||+++ ++... ...+...+               .+++|+|   ++.+|++++.||.
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~v---------------~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRN-MALRW-ETNIKNGV---------------CSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTT-TEEEE-EEECSSCE---------------EEEEESCSSSSCCEEEEEESTTE
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECcc-Cceee-ecCCCCce---------------EEEEcCCCCCCCCEEEEECCCCe
Confidence               7899999999876 9999999986 55533 34455443               7999999   9999999999999


Q ss_pred             EEEEecCCCCCceeE-----EecCCCCccceeeecCCcccccccc-eeeeecccCc-ccCCCC-----------------
Q 014644          328 LRIFSHGVGSAGGIT-----VEAGKNENRKPILQAAPRARRSSLS-NLTRGLYRQA-HENSSS-----------------  383 (421)
Q Consensus       328 i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~d~~-~iw~~~-----------------  383 (421)
                      |++||++++ .....     +.+|...+..+.|+|+       .. +|++|+.|+. ++|+..                 
T Consensus       236 i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          236 FHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQ-------NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             EEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETT-------EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             EEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCC-------CCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            999999876 33333     3499999999999998       33 7999999999 999322                 


Q ss_pred             ----CccccccccccCeEEEEEccCCCeEE-Eec-CCceEEEe
Q 014644          384 ----GHHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHY  420 (421)
Q Consensus       384 ----~~~~~~~~~~~~v~~~~~spd~~~la-~~~-~~~~~i~~  420 (421)
                          ..+....+|...|++++|+|++++|+ +++ ++.+++|+
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence                12344567889999999999999998 677 66799997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-35  Score=310.02  Aligned_cols=340  Identities=14%  Similarity=0.183  Sum_probs=263.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeE-Eeeec-----------CCCCCccccccccccc------
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM-----------DHFPFVSSENTLLAEK------   91 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~-----------~~~~~v~~~~~~~~~~------   91 (421)
                      .+|...|++++|  +|++.+|++++.||+|++||+.+++.. .+...           .....+.+++|.+...      
T Consensus       740 ~~h~~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  817 (1249)
T 3sfz_A          740 FGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA  817 (1249)
T ss_dssp             CCCSSCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred             cCCCCCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence            379999999999  789999999999999999999887632 22111           1122445555554332      


Q ss_pred             ------------------------ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeec
Q 014644           92 ------------------------NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN  147 (421)
Q Consensus        92 ------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  147 (421)
                                              .+.++.++++...+..++.  ++.+++|+..+.   .++..+ .+|...|.+++|+
T Consensus       818 ~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~v~vwd~~~~---~~~~~~-~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS--QYCVELWNIDSR---LKVADC-RGHLSWVHGVMFS  891 (1249)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS--SSCEEEEETTTT---EEEEEE-CCCSSCEEEEEEC
T ss_pred             CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCC---ceeeec-CCCccceEEEEEC
Confidence                                    3334445555555555544  557999999887   778888 8999999999999


Q ss_pred             CCCCEEEEE-cCCcEEEEeCCCCc--------------------------------------------------------
Q 014644          148 SDCETFVSA-DDLRINLWNLEISD--------------------------------------------------------  170 (421)
Q Consensus       148 ~~~~~l~s~-~d~~i~lwd~~~~~--------------------------------------------------------  170 (421)
                      |++++|+++ .|++|++|++....                                                        
T Consensus       892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  971 (1249)
T 3sfz_A          892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP  971 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred             CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence            999999998 99999999964100                                                        


Q ss_pred             -----------eeeeeeecCC----CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccc
Q 014644          171 -----------QCFNIVDMKP----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  235 (421)
Q Consensus       171 -----------~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~  235 (421)
                                 ..+.+++...    ..+.+|...|.+++|+|++ ++|++++.||.|++||+.++...     ..     
T Consensus       972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~----- 1040 (1249)
T 3sfz_A          972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV-----FL----- 1040 (1249)
T ss_dssp             TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE-----CC-----
T ss_pred             CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE-----EE-----
Confidence                       0011111111    1235788999999999999 99999999999999999987533     11     


Q ss_pred             cCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC
Q 014644          236 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  315 (421)
Q Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  315 (421)
                              ..|...+.+++|+|++.+++.+.++.|++||+.+ ++....+.+|...+               .+++|+|+
T Consensus      1041 --------~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~d 1096 (1249)
T 3sfz_A         1041 --------QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAISSD 1096 (1249)
T ss_dssp             --------BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEECSS
T ss_pred             --------ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEECCC
Confidence                    2347889999999988666555669999999986 88888898888765               79999999


Q ss_pred             CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccc---
Q 014644          316 GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELS---  389 (421)
Q Consensus       316 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~---  389 (421)
                      ++++++++.||.|++||+.++ .....+.+|...+.+++|+|+  +     ..|++|+.||. ++|+  .++.....   
T Consensus      1097 ~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~h~~~v~~~~~s~d--g-----~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1097 ATKFSSTSADKTAKIWSFDLL-SPLHELKGHNGCVRCSAFSLD--G-----ILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             SSSCEEECCSSCCCEECSSSS-SCSBCCCCCSSCEEEEEECSS--S-----SEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             CCEEEEEcCCCcEEEEECCCc-ceeeeeccCCCcEEEEEECCC--C-----CEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence            999999999999999999987 667888999999999999998  3     48999999999 9993  33333322   


Q ss_pred             ------cccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          390 ------YNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       390 ------~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                            ..|...|++++|+||+++|++++ +.+++|+.
T Consensus      1169 ~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~ 1205 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNV 1205 (1249)
T ss_dssp             C-------CCSCCCEEEECTTSSCEEEES-SSEEEBCS
T ss_pred             cccccccccCceEEEEEECCCCCEEEECC-CeEEEEEC
Confidence                  46788999999999999999887 78999973

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-35  Score=295.43  Aligned_cols=355  Identities=8%  Similarity=0.022  Sum_probs=240.1

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ....+|.+.|++++|  +|++.+||+|+.||+|+||+..+.+...  ...+..+|.+++|.+             +.+++
T Consensus        11 ~~~~gh~~~V~~laf--spdg~~lAsgs~Dg~I~lw~~~~~~~~~--~~~~~~~V~~l~fsp-------------g~~L~   73 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAF--DFTQNLLAIATVTGEVHIYGQQQVEVVI--KLEDRSAIKEMRFVK-------------GIYLV   73 (902)
T ss_dssp             EEEEECSSCEEEEEE--ETTTTEEEEEETTSEEEEECSTTCEEEE--ECSSCCCEEEEEEET-------------TTEEE
T ss_pred             ccccCCCCCcEEEEE--CCCCCEEEEEeCCCEEEEEeCCCcEEEE--EcCCCCCEEEEEEcC-------------CCEEE
Confidence            345689999999999  7999999999999999999988765322  233455555555543             33445


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCC-----
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-----  180 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~-----  180 (421)
                      .++.  ++.+++|++.+.   +++..+ . |.+.|++++|+|++++|++| .||+|++||++ ..++. .+.+..     
T Consensus        74 S~s~--D~~v~lWd~~~~---~~~~~~-~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~-~~~~~-~~~i~~~~~~~  144 (902)
T 2oaj_A           74 VINA--KDTVYVLSLYSQ---KVLTTV-F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID-RDQLS-SFKLDNLQKSS  144 (902)
T ss_dssp             EEET--TCEEEEEETTTC---SEEEEE-E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETT-TTEEE-EEEECCHHHHH
T ss_pred             EEEC--cCeEEEEECCCC---cEEEEE-c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC-CCccc-cceeccccccc
Confidence            5443  678999999887   777777 3 67899999999999999999 99999999998 44432 111100     


Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccccc--CC---CcccccccccceeEEEE
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES--HG---SKSFFTEIIASISDIKF  255 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~--~~---~~~~~~~~~~~v~~~~~  255 (421)
                      ..+.+|.+.|.+++|+|++...|++++.|+.| +||+++++..    +.+..|...  +.   .......|...|.+++|
T Consensus       145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK----QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE----EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE----EEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence            23477999999999999743789999999999 9999987643    333332000  00   00123445678999999


Q ss_pred             cCCCCEEEEecC-CeEEEEECCCCCcceeE--E---eec-------------cCccccccc--------------c-cCC
Q 014644          256 ANDGQHLLSRDY-MNLKLWDIRMDSTPVAT--F---KIH-------------EHLRPKLCD--------------L-YNN  301 (421)
Q Consensus       256 s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~--~---~~~-------------~~~~~~~~~--------------~-~~~  301 (421)
                      +|+|++|++++. +.|++||+++ ++++..  +   ..|             ...+..++.              . ...
T Consensus       220 spdg~~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~  298 (902)
T 2oaj_A          220 HPNSLHIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS  298 (902)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred             cCCCCEEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence            999999999876 9999999986 555432  1   011             111111100              0 000


Q ss_pred             C----cc--e-----------------------------------eeeEEEEcC----------CCCEEEEeeCCCeEEE
Q 014644          302 D----SI--F-----------------------------------DKFECSVSG----------DGLHFATGSYSNLLRI  330 (421)
Q Consensus       302 ~----~~--~-----------------------------------~~~~~~~sp----------~~~~l~~~s~dg~i~i  330 (421)
                      +    .+  +                                   .+.++++.+          ++..+++++.||.|++
T Consensus       299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~  378 (902)
T 2oaj_A          299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET  378 (902)
T ss_dssp             TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred             CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence            0    00  0                                   012333333          2346777888889999


Q ss_pred             EecCCCCCcee----------------------------------------EEecCCCCccceeeecCCcccccccceee
Q 014644          331 FSHGVGSAGGI----------------------------------------TVEAGKNENRKPILQAAPRARRSSLSNLT  370 (421)
Q Consensus       331 wd~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  370 (421)
                      ||+.++.....                                        .+.+|...+..++|+|+       ...|+
T Consensus       379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-------g~~la  451 (902)
T 2oaj_A          379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-------GTAFI  451 (902)
T ss_dssp             EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-------EEEEE
T ss_pred             EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-------CcEEE
Confidence            99865521111                                        13344555555666665       44899


Q ss_pred             eecccCc-ccCCCCC-cccc-------c-----cccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          371 RGLYRQA-HENSSSG-HHEL-------S-----YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       371 ~g~~d~~-~iw~~~~-~~~~-------~-----~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +|+.|+. ++|+... .+..       .     .+|...|++++|+||+++||+|+ ++.++||+
T Consensus       452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd  516 (902)
T 2oaj_A          452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK  516 (902)
T ss_dssp             EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence            9999999 9994322 1111       0     16788999999999999999999 56699997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.6e-35  Score=266.16  Aligned_cols=247  Identities=13%  Similarity=0.155  Sum_probs=194.2

Q ss_pred             ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ...+|...|++++|  +|++ .+++++.||+|+|||+.+++....                                   
T Consensus        89 ~~~~~~~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~-----------------------------------  130 (357)
T 4g56_B           89 AGVQTEAGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLV-----------------------------------  130 (357)
T ss_dssp             EEEECSSCEEEEEE--ETTT-EEEEEETTSCEEEC--------CC-----------------------------------
T ss_pred             ccCCCCCCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEE-----------------------------------
Confidence            34578999999999  4665 566788999999999987651111                                   


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                           ..... .+|...|++++|+|++++|+++ .|++|++||++ .++.+..+       .+|
T Consensus       131 ---------------------~~~~~-~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~-------~~h  180 (357)
T 4g56_B          131 ---------------------NKFAK-YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSY-------NAH  180 (357)
T ss_dssp             ---------------------CCEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEE-------CCC
T ss_pred             ---------------------Eeecc-CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEE-------cCC
Confidence                                 00112 5899999999999999999999 99999999998 56666554       789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEe
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR  265 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~  265 (421)
                      ...|.+++|+|++..++++++.|++|++||+++++..    ..+..           ..+...+.+++|+|++ .+|++|
T Consensus       181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTTEEEEE
T ss_pred             CCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccceEEEe
Confidence            9999999999998568999999999999999987543    11111           2235679999999974 577787


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      +. +.|++||+++ ++.+..+.+|...+               .+++|+|++ ++|++|+.||+|+|||++++ + ....
T Consensus       246 ~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~-~~~~  307 (357)
T 4g56_B          246 DETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFS-E-VFRD  307 (357)
T ss_dssp             ESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSC-E-EEEE
T ss_pred             ecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCC-c-EeEE
Confidence            65 9999999986 88888898888765               799999987 67999999999999999876 3 3345


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      .+|.+.|.+++|+|..      ...|++++.|+. ++|+
T Consensus       308 ~~H~~~V~~vafsP~d------~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          308 LSHRDFVTGVAWSPLD------HSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CCCSSCEEEEEECSSS------TTEEEEEETTSCEEEEE
T ss_pred             CCCCCCEEEEEEeCCC------CCEEEEEcCCCeEEEEE
Confidence            5899999999999831      238999999999 9993

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-34  Score=262.11  Aligned_cols=247  Identities=14%  Similarity=0.160  Sum_probs=203.0

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      ++.+.+ .+|.+.|.+++|+|++++|+++ .|++|++||+. .+.....+       ..|...|.+++|+|++ .+|+++
T Consensus        46 ~~~~~l-~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~-------~~~~~~v~~~~~s~~~-~~l~s~  115 (340)
T 1got_B           46 RTRRTL-RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAI-------PLRSSWVMTCAYAPSG-NYVACG  115 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEE-------ECSSSCEEEEEECTTS-SEEEEE
T ss_pred             hhheee-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEe-------ecCCccEEEEEECCCC-CEEEEE
Confidence            556677 8999999999999999999999 99999999998 45555444       6788999999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|+.|++||+.++.........             +.+|...+.++.|++++.++.++.++.|++||+++ ++.+..+.
T Consensus       116 ~~d~~v~iw~~~~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~-~~~~~~~~  181 (340)
T 1got_B          116 GLDNICSIYNLKTREGNVRVSRE-------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFT  181 (340)
T ss_dssp             ETTCEEEEEETTTCSBSCEEEEE-------------EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred             eCCCeEEEEECccCCCcceeEEE-------------ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC-CcEEEEEc
Confidence            99999999999875322111122             34458899999999988744444559999999987 88888888


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      +|...+               .+++|+|+++++++|+.||.|++||++++ .....+.+|...+..++|+|+       .
T Consensus       182 ~h~~~v---------------~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~-------~  238 (340)
T 1got_B          182 GHTGDV---------------MSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN-------G  238 (340)
T ss_dssp             CCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTT-------S
T ss_pred             CCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCC-------C
Confidence            888765               79999999999999999999999999987 677889999999999999998       3


Q ss_pred             ceeeeecccCc-ccCCCC--Cccccc--cccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          367 SNLTRGLYRQA-HENSSS--GHHELS--YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw~~~--~~~~~~--~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ..|++|+.|+. ++|+..  ..+...  ..+...|.+++|+|++++|++|+ ++.+++|+.
T Consensus       239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence            48999999999 999432  222211  12335799999999999999999 556999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.9e-35  Score=263.07  Aligned_cols=246  Identities=13%  Similarity=0.097  Sum_probs=189.2

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|++.|++++|  ++++++||+|+.|++|+|||+.++..                                        
T Consensus        10 ~~H~~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~----------------------------------------   47 (316)
T 3bg1_A           10 TSHEDMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQ----------------------------------------   47 (316)
T ss_dssp             ----CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred             ccccCeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCc----------------------------------------
Confidence            479999999999  78999999999999999999876531                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDD  185 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~  185 (421)
                                        .++..+ .+|.+.|.+++|+|  ++++|+++ .|++|++||++... .....       +.+
T Consensus        48 ------------------~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-------~~~  101 (316)
T 3bg1_A           48 ------------------ILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE-------HAG  101 (316)
T ss_dssp             ------------------EEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE-------ECC
T ss_pred             ------------------EEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE-------ccC
Confidence                              223345 79999999999986  48999998 99999999998432 22222       368


Q ss_pred             cCCCeeEEEEecC--CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-----
Q 014644          186 LTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----  258 (421)
Q Consensus       186 ~~~~v~~~~~~p~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-----  258 (421)
                      |...|.+++|+|+  + .+|++++.|++|++||++.+.... ....+             ..|...+.+++|+|+     
T Consensus       102 h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-~~~~~-------------~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A          102 HDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-VKKIN-------------NAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-ECCBT-------------TSSSSCBCCCEECCCCCC--
T ss_pred             CCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-eeeee-------------ccccCCcceEEEccccCCcc
Confidence            9999999999998  6 899999999999999998753110 01222             335778999999997     


Q ss_pred             ------------CCEEEEecC-CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC----CEE
Q 014644          259 ------------GQHLLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHF  319 (421)
Q Consensus       259 ------------~~~l~~~~~-~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~----~~l  319 (421)
                                  +++|++++. +.|++||++..+  +++..+.+|...+               .+++|+|++    ++|
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCceE
Confidence                        468888875 999999997422  3556677787755               799999986    889


Q ss_pred             EEeeCCCeEEEEecCCCC---CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          320 ATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ++++.||+|++|++.+..   .....+..|...+..++|+|+       +..|++++.|+. ++|
T Consensus       232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-------g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT-------ANILAVSGGDNKVTLW  289 (316)
T ss_dssp             EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT-------TCCEEEEESSSCEEEE
T ss_pred             EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC-------CCEEEEEcCCCeEEEE
Confidence            999999999999998631   223456677778888888877       337788888887 888

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.8e-34  Score=268.48  Aligned_cols=306  Identities=13%  Similarity=0.192  Sum_probs=239.7

Q ss_pred             ccccccE-EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V-~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.| .++.+    ++++|++|+.||+|++||+.+++..... ..|...|.++++.              ...+..+
T Consensus       115 ~~h~~~v~~~~~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--------------~~~l~s~  175 (445)
T 2ovr_B          115 KGHDDHVITCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR--------------DNIIISG  175 (445)
T ss_dssp             ECSTTSCEEEEEE----ETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE--------------TTEEEEE
T ss_pred             cccCCCcEEEEEE----cCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec--------------CCEEEEE
Confidence            3687764 55554    4789999999999999999988733222 2345555544442              2244555


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      +.  ++.+++|+..+.   +++..+ .+|...|.+++|+  ++.|+++ .|++|++||+. .++....+       .+|.
T Consensus       176 ~~--dg~i~vwd~~~~---~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-~~~~~~~~-------~~~~  239 (445)
T 2ovr_B          176 ST--DRTLKVWNAETG---ECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-TGQCLHVL-------MGHV  239 (445)
T ss_dssp             ET--TSCEEEEETTTT---EEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS-SCCEEEEE-------ECCS
T ss_pred             eC--CCeEEEEECCcC---cEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC-CCcEEEEE-------cCCc
Confidence            44  668999999887   888888 8999999999995  5778888 99999999998 45555544       6789


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..|.+++|  ++ ..+++++.|+.|++||+++++..    ..+..             |...+.+++|  ++.++++++.
T Consensus       240 ~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~  297 (445)
T 2ovr_B          240 AAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------HTNRVYSLQF--DGIHVVSGSL  297 (445)
T ss_dssp             SCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------CSSCEEEEEE--CSSEEEEEET
T ss_pred             ccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EEecC-------------CCCceEEEEE--CCCEEEEEeC
Confidence            99999999  56 88999999999999999886543    33333             4778999999  7889998875


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-  345 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-  345 (421)
                       +.|++||+++ ++.+..+.+|...+               .++.+  +++++++|+.||.|++||++++ .....+.+ 
T Consensus       298 d~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~  358 (445)
T 2ovr_B          298 DTSIRVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP  358 (445)
T ss_dssp             TSCEEEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST
T ss_pred             CCeEEEEECCC-CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC
Confidence             9999999987 88888888877643               44444  6779999999999999999887 56667765 


Q ss_pred             --CCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccc-----cccccCeEEEEEccCCCeEEEecCCc
Q 014644          346 --GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS  415 (421)
Q Consensus       346 --~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~-----~~~~~~v~~~~~spd~~~la~~~~~~  415 (421)
                        |..++.++.+.+.         .|++|+.||. ++|+  .++.+...     .++...|++++|+|++.+||+|+.|+
T Consensus       359 ~~~~~~v~~~~~~~~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          359 NKHQSAVTCLQFNKN---------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             TSCSSCEEEEEECSS---------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             CCCCCCEEEEEECCC---------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence              8888999988654         8999999999 9993  34444333     36778899999999999999999655


Q ss_pred             -----eEEEe
Q 014644          416 -----LFFHY  420 (421)
Q Consensus       416 -----~~i~~  420 (421)
                           +++|+
T Consensus       430 ~~~~~l~v~d  439 (445)
T 2ovr_B          430 TEETKLLVLD  439 (445)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCccEEEEEE
Confidence                 88886

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-34  Score=253.59  Aligned_cols=271  Identities=17%  Similarity=0.129  Sum_probs=220.3

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|   +++++|++++.||.|++||+.+++                                         
T Consensus        15 ~~h~~~v~~~~~---~~~~~l~s~~~dg~v~vw~~~~~~-----------------------------------------   50 (313)
T 3odt_A           15 KGHDQDVRDVVA---VDDSKVASVSRDGTVRLWSKDDQW-----------------------------------------   50 (313)
T ss_dssp             CCCSSCEEEEEE---EETTEEEEEETTSEEEEEEESSSE-----------------------------------------
T ss_pred             hCCCCCcEEEEe---cCCCEEEEEEcCCcEEEEECCCCE-----------------------------------------
Confidence            368899999999   568899999999999999997654                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc--eeeeeeecCCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~~~~  186 (421)
                                         ....+ ..|...|.+++|+|++++|+++ .|+.|++|++....  +...       .+.+|
T Consensus        51 -------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------~~~~~  103 (313)
T 3odt_A           51 -------------------LGTVV-YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY-------TLIGH  103 (313)
T ss_dssp             -------------------EEEEE-EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C-------EECCC
T ss_pred             -------------------EEEEe-ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc-------chhhc
Confidence                               11223 5688899999999999999999 99999999987432  2232       33789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEe
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR  265 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  265 (421)
                      ...|.+++|  ++ ..+++++.|+.|++||..  ...    ..+..             |...+.+++|.| ++.+++++
T Consensus       104 ~~~i~~~~~--~~-~~l~~~~~d~~i~~~d~~--~~~----~~~~~-------------~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A          104 QGNVCSLSF--QD-GVVISGSWDKTAKVWKEG--SLV----YNLQA-------------HNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             SSCEEEEEE--ET-TEEEEEETTSEEEEEETT--EEE----EEEEC-------------CSSCEEEEEEEETTTTEEEEE
T ss_pred             ccCEEEEEe--cC-CEEEEEeCCCCEEEEcCC--cEE----Eeccc-------------CCCceeEEEEccCCCCEEEEE
Confidence            999999999  45 789999999999999922  211    23333             478899999998 89999988


Q ss_pred             cC-CeEEEEECCCCCcceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      +. +.|++||.   .+....+.. +...+               .+++|+|++. +++++.||.|++||++++ .....+
T Consensus       162 ~~d~~i~i~d~---~~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~  221 (313)
T 3odt_A          162 SADKTIKLWQN---DKVIKTFSGIHNDVV---------------RHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTY  221 (313)
T ss_dssp             ETTSCEEEEET---TEEEEEECSSCSSCE---------------EEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEE
T ss_pred             ECCCCEEEEec---CceEEEEeccCcccE---------------EEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhh
Confidence            76 99999993   555666665 55443               7999999998 899999999999999987 677888


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .+|..++..++|+|+       . .|++++.|+. ++|+  .++.......+...|.+++|+|++++++++.++.+++|+
T Consensus       222 ~~~~~~i~~~~~~~~-------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~  293 (313)
T 3odt_A          222 EGHESFVYCIKLLPN-------G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFS  293 (313)
T ss_dssp             ECCSSCEEEEEECTT-------S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred             hcCCceEEEEEEecC-------C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence            999999999999988       2 4889999999 9994  445555666788899999999999977766688899997


Q ss_pred             C
Q 014644          421 A  421 (421)
Q Consensus       421 ~  421 (421)
                      .
T Consensus       294 ~  294 (313)
T 3odt_A          294 Q  294 (313)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-33  Score=255.13  Aligned_cols=284  Identities=12%  Similarity=0.098  Sum_probs=225.6

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce----eEEeeecCCCCCcccccccccccceeeccCCC
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  100 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (421)
                      ..+...+|.+.|++++|  ++++++|++++ ||.|++||+.+++    ...+....+..            .+.++.+++
T Consensus        43 ~~~~~~~h~~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~  107 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN------------YIRSCKLLP  107 (337)
T ss_dssp             EEEEEECCSSCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS------------BEEEEEECT
T ss_pred             ccceeccCCCceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCC------------cEEEEEEcC
Confidence            34455689999999999  78999999999 9999999998764    12222123333            455566666


Q ss_pred             CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644          101 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       101 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                      +...+..++.  ++.+++|+..... ......+ ..|...|.+++|+|++++|+++ .|+.|++||++ .++....+   
T Consensus       108 ~~~~l~~~~~--d~~i~~~d~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~---  179 (337)
T 1gxr_A          108 DGCTLIVGGE--ASTLSIWDLAAPT-PRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQF---  179 (337)
T ss_dssp             TSSEEEEEES--SSEEEEEECCCC---EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE---
T ss_pred             CCCEEEEEcC--CCcEEEEECCCCC-cceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeee---
Confidence            6666666654  5689999998762 1245555 7899999999999999999999 99999999998 55555544   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                          ..|...|.+++|+|++ ..|++++.|+.|++||+++++..    ..+.              +...+.+++|+|++
T Consensus       180 ----~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~  236 (337)
T 1gxr_A          180 ----QGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTG  236 (337)
T ss_dssp             ----CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTS
T ss_pred             ----ecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCC
Confidence                6788999999999999 99999999999999999987543    2222              25689999999999


Q ss_pred             CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          260 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      +++++++. +.|++||++. ++. ..+..|...+               .+++|+|++++|++++.||.|++||+.++..
T Consensus       237 ~~l~~~~~~~~i~~~~~~~-~~~-~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          237 EWLAVGMESSNVEVLHVNK-PDK-YQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             SEEEEEETTSCEEEEETTS-SCE-EEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEcCCCcEEEEECCC-CCe-EEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            99999876 9999999985 443 4555666544               7999999999999999999999999998733


Q ss_pred             ceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                       . ....|...+..+.|+++       ...|++++.|+. ++|
T Consensus       300 -~-~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          300 -I-FQSKESSSVLSCDISVD-------DKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -E-EEEECSSCEEEEEECTT-------SCEEEEEETTSCEEEE
T ss_pred             -E-EEecCCCcEEEEEECCC-------CCEEEEecCCCeEEEE
Confidence             2 44568899999999998       348999999998 888

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=271.55  Aligned_cols=337  Identities=14%  Similarity=0.121  Sum_probs=226.5

Q ss_pred             ccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCC---ce-eEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           30 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRD---QK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      .+|.+.|++++|  +| ++.+|++|+.||+|+|||+.+   +. ........+...            +.++.+.++...
T Consensus        60 ~~h~~~V~~~~~--s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~------------v~~~~~~~~~~~  125 (437)
T 3gre_A           60 ENEPNSITSSAV--SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSST------------VTQITMIPNFDA  125 (437)
T ss_dssp             TTTTSCEEEEEE--ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSC------------EEEEEECTTSSE
T ss_pred             cCCCCceEEEEE--CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCC------------EEEEEEeCCCCE
Confidence            368899999999  67 899999999999999999876   33 111222234454            455555556666


Q ss_pred             eeecccccccceeEEeecccceeeeeeee--------c-CC--CCcceEEEe--ecCCCCEEEEE-cCCcEEEEeCCCCc
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVY--------P-HA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISD  170 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~--h~~~v~~l~--~~~~~~~l~s~-~d~~i~lwd~~~~~  170 (421)
                      ++.++.  ++.+++|+++....+++.+.+        . ..  +...+.++.  +++++.+|+++ .|+.|++||++ ..
T Consensus       126 l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~  202 (437)
T 3gre_A          126 FAVSSK--DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TL  202 (437)
T ss_dssp             EEEEET--TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TC
T ss_pred             EEEEeC--CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC
Confidence            666655  578999998632222333322        0 11  455666666  56789999999 99999999998 45


Q ss_pred             eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644          171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                      +.+..+.     ...|...|.+++|+|++ .+|++++.||.|++||++.++..    ..+..            .|...|
T Consensus       203 ~~~~~~~-----~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v  260 (437)
T 3gre_A          203 ERLQIIE-----NSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPI  260 (437)
T ss_dssp             CEEEEEE-----CCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEE
T ss_pred             eeeEEEc-----cCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCce
Confidence            5555441     12288999999999998 99999999999999999986543    32221            125689


Q ss_pred             eEEEEc----CCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccccccc-----------CCCcceeeeEEEEcC
Q 014644          251 SDIKFA----NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-----------NNDSIFDKFECSVSG  314 (421)
Q Consensus       251 ~~~~~s----~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~sp  314 (421)
                      .+++|+    |++.+|++++. +.|++||+++ ++.+..+.+|...+.......           .......+.+++|+ 
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-  338 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-  338 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence            999555    56889999876 9999999986 888888887765443221100           00011124789999 


Q ss_pred             CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcccee---eecCCcccccccceeeeecccCcccCCCCCccccccc
Q 014644          315 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI---LQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYN  391 (421)
Q Consensus       315 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~  391 (421)
                      ++++|++|+.||.|++||+.++ .....+.+|........   +.+.       ...++... +  .  ..+........
T Consensus       339 ~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~--~--~~~~~~~~~~~  405 (437)
T 3gre_A          339 NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTAN-------LTMLLRKM-K--R--TSTHSVDDSLY  405 (437)
T ss_dssp             TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETT-------EEEEEEEC-C----------------
T ss_pred             CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecc-------eEEEEEec-c--c--ccccccCcccc
Confidence            7799999999999999999987 66677777754432222   2222       11222220 0  0  11112233345


Q ss_pred             cccCeEEEEEccC--CCeEEEec-CCceEEEe
Q 014644          392 LSSKLLHLAWHPT--TNLIACAN-GNSLFFHY  420 (421)
Q Consensus       392 ~~~~v~~~~~spd--~~~la~~~-~~~~~i~~  420 (421)
                      |...|++++|+++  +.+|++|+ ++.|+||+
T Consensus       406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            8899999999999  77899998 56699995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.3e-34  Score=267.63  Aligned_cols=289  Identities=12%  Similarity=0.176  Sum_probs=227.0

Q ss_pred             ccccccE-EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V-~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...| .++.+    ++++|++|+.||+|++||+.+++                                        
T Consensus       118 ~~h~~~v~~~~~~----~~~~l~sgs~dg~i~vwd~~~~~----------------------------------------  153 (464)
T 3v7d_B          118 RGHMTSVITCLQF----EDNYVITGADDKMIRVYDSINKK----------------------------------------  153 (464)
T ss_dssp             ECCSSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTE----------------------------------------
T ss_pred             cCCCCCcEEEEEE----CCCEEEEEcCCCcEEEEECCCCc----------------------------------------
Confidence            3677774 66665    36799999999999999988754                                        


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                          ++..+ .+|.+.|.+++|+|++ +|++| .|++|++||++ .++....+       .+|.
T Consensus       154 --------------------~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~-~~~~~~~~-------~~h~  203 (464)
T 3v7d_B          154 --------------------FLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KGCCTHVF-------EGHN  203 (464)
T ss_dssp             --------------------EEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT-TTEEEEEE-------CCCS
T ss_pred             --------------------EEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC-CCcEEEEE-------CCCC
Confidence                                23334 6899999999999988 88888 99999999998 55666554       7899


Q ss_pred             CCeeEEEEec--CCCCeEEEEEcCCeEEEEECCcccccccchhh------hccccccCCCcccccccccceeEEEEcCCC
Q 014644          188 EVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARI------LRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       188 ~~v~~~~~~p--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      ..|.+++|++  ++ .++++++.|+.|++||++++.........      +......+.....+.+|...+.++  ++++
T Consensus       204 ~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~  280 (464)
T 3v7d_B          204 STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG  280 (464)
T ss_dssp             SCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred             CccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence            9999999994  66 89999999999999999986532110000      000000111122345667777776  5778


Q ss_pred             CEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          260 QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       260 ~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      +++++++. +.|++||+++ ++++..+.+|...+               .+++|+|+++++++|+.||.|++||+.++ .
T Consensus       281 ~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~  343 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCISASMDTTIRIWDLENG-E  343 (464)
T ss_dssp             TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred             CEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCE---------------EEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence            99999876 9999999986 88888888887755               79999999999999999999999999987 7


Q ss_pred             ceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc-cccccccccCeEEEEEccCCCeEEEecCCce
Q 014644          339 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAWHPTTNLIACANGNSL  416 (421)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-~~~~~~~~~~v~~~~~spd~~~la~~~~~~~  416 (421)
                      ....+.+|...+..+.+++.         .|++++.|+. ++|+.... ......+...+..++|+|++++|++++++.+
T Consensus       344 ~~~~~~~h~~~v~~~~~~~~---------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i  414 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLSDK---------FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF  414 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSS---------EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEE
T ss_pred             EEEEEeCCCCcEEEEEEcCC---------EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeE
Confidence            78889999999999999855         8999999999 99944332 2222345667888999999999999999999


Q ss_pred             EEEeC
Q 014644          417 FFHYA  421 (421)
Q Consensus       417 ~i~~~  421 (421)
                      ++|+.
T Consensus       415 ~iwd~  419 (464)
T 3v7d_B          415 NIYNL  419 (464)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=264.71  Aligned_cols=301  Identities=13%  Similarity=0.136  Sum_probs=226.3

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCc---eeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      .+..+.|...|++++|  ++++.+|++++.|+.|++||+.+.   .........+...|.+++|.+..           .
T Consensus        60 ~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~  126 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-----------D  126 (416)
T ss_dssp             CSCCCCCSSCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-----------T
T ss_pred             EEEEEecCCceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-----------C
Confidence            4455679999999999  789999999999999999999872   11122222355555555544331           4


Q ss_pred             eeeeecccccccceeEEeecccc------eeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeee
Q 014644          103 AHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFN  174 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~  174 (421)
                      ..++.++.  ++.+++|++....      .......+ .+|...|.+++|+|+ +.+|+++ .|+.|++||++ ..+...
T Consensus       127 ~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~  202 (416)
T 2pm9_A          127 NVLASGGN--NGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEVI  202 (416)
T ss_dssp             TBEEEECS--SSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEEE
T ss_pred             CEEEEEcC--CCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcce
Confidence            44555543  5679999998763      11222333 689999999999999 7899998 99999999998 455555


Q ss_pred             eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC---eEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644          175 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  251 (421)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  251 (421)
                      .+... ....+|...|.+++|+|++..++++++.|+   .|++||++++...   ...+.            ..|...|.
T Consensus       203 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~------------~~~~~~v~  266 (416)
T 2pm9_A          203 HLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN------------QGHQKGIL  266 (416)
T ss_dssp             EECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC------------SCCSSCEE
T ss_pred             EEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee------------cCccCcee
Confidence            44211 111234789999999999757899999998   9999999985321   12333            03478999


Q ss_pred             EEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeE
Q 014644          252 DIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLL  328 (421)
Q Consensus       252 ~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i  328 (421)
                      +++|+| ++++|++++. +.|++||+++ ++++..+..|...+               .+++|+|++ ++|++++.||.|
T Consensus       267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          267 SLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             EEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSEE
T ss_pred             EEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCcE
Confidence            999999 8999999876 9999999987 88888898888765               799999998 899999999999


Q ss_pred             EEEecCCCCCceeE----------------------------------EecCCCCccceeeecCCcccccccceeeeecc
Q 014644          329 RIFSHGVGSAGGIT----------------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGLY  374 (421)
Q Consensus       329 ~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  374 (421)
                      ++||+.+.......                                  ...|..++..++|+|+  |+     +|++|+.
T Consensus       331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~-----~la~~~~  403 (416)
T 2pm9_A          331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG--GK-----LVQITPD  403 (416)
T ss_dssp             EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT--TE-----EECBCTT
T ss_pred             EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeC--Ce-----EEEEeCC
Confidence            99999876432111                                  0116677889999998  44     9999999


Q ss_pred             cCc-ccCCC
Q 014644          375 RQA-HENSS  382 (421)
Q Consensus       375 d~~-~iw~~  382 (421)
                      |+. ++|+.
T Consensus       404 d~~v~~w~~  412 (416)
T 2pm9_A          404 GKGVSITNP  412 (416)
T ss_dssp             SSCBCCBCC
T ss_pred             CCeEEEEEe
Confidence            999 99943

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.9e-34  Score=254.94  Aligned_cols=242  Identities=11%  Similarity=0.130  Sum_probs=201.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCce----eeeeeecCCCCCCccCCCeeEEEEecCCCC
Q 014644          128 RCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ----CFNIVDMKPSNMDDLTEVITSAEFHPIYCN  201 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  201 (421)
                      .+...+ .+|.+.|++++|+|++ ++|++| .|++|++|++.....    .+.       .+.+|...|.+++|+|++ .
T Consensus         8 ~l~~~l-~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~s~dg-~   78 (319)
T 3frx_A            8 VLRGTL-EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-------SFKGHSHIVQDCTLTADG-A   78 (319)
T ss_dssp             EEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE-------EEECCSSCEEEEEECTTS-S
T ss_pred             EEEEEE-ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce-------EEeCCcccEEEEEECCCC-C
Confidence            555667 8999999999999965 899998 999999999863221    222       347899999999999999 9


Q ss_pred             eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc
Q 014644          202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  280 (421)
Q Consensus       202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~  280 (421)
                      +|++++.|++|++||+.+++..    ..+..             |...|.+++|+|++.+|++++. +.|++||++  +.
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~  139 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETY----QRFVG-------------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQ  139 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEE----EEEEC-------------CSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SC
T ss_pred             EEEEEeCCCEEEEEECCCCCee----EEEcc-------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CC
Confidence            9999999999999999987643    33444             4889999999999999999876 999999996  56


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCC------CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCcccee
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD------GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPI  354 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~------~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  354 (421)
                      .+..+.+|...+               .+++|+|.      +..|++++.|+.|++||+++. .....+.+|..++..++
T Consensus       140 ~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~  203 (319)
T 3frx_A          140 CLATLLGHNDWV---------------SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLT  203 (319)
T ss_dssp             EEEEECCCSSCE---------------EEEEECCC------CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEEEEE
T ss_pred             eEEEEeccCCcE---------------EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEEEEE
Confidence            777788887755               78899884      458999999999999999876 66778899999999999


Q ss_pred             eecCCcccccccceeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          355 LQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       355 ~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      |+|+  +     .+|++|+.|+. ++|+.. ............|.+++|+|++.+|++++++++.+|+
T Consensus       204 ~sp~--g-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~  264 (319)
T 3frx_A          204 ASPD--G-----TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS  264 (319)
T ss_dssp             ECTT--S-----SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEE
T ss_pred             EcCC--C-----CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            9998  3     48999999999 999432 2222333445789999999999999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-35  Score=261.68  Aligned_cols=252  Identities=15%  Similarity=0.208  Sum_probs=184.4

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|++++|  +|++++|++|+.|++|+|||+........                                      
T Consensus        56 ~h~~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~--------------------------------------   95 (330)
T 2hes_X           56 AHKKAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTF--------------------------------------   95 (330)
T ss_dssp             CCCSCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------C--------------------------------------
T ss_pred             CccCCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccc--------------------------------------
Confidence            39999999999  78999999999999999999865320000                                      


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc---eeeeeeecCCCCCCcc
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNMDDL  186 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~---~~~~~~~~~~~~~~~~  186 (421)
                                     ..+++..+ .+|...|.+++|+|++++|+++ .|++|++||++..+   +++..       +.+|
T Consensus        96 ---------------~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~-------~~~h  152 (330)
T 2hes_X           96 ---------------EMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV-------LQEH  152 (330)
T ss_dssp             ---------------CCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE-------ECCC
T ss_pred             ---------------cceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE-------eccC
Confidence                           00445556 8999999999999999999999 99999999995333   23333       3789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLS  264 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~  264 (421)
                      ...|.+++|+|++ .+|++++.|++|++||+..+..  +....+             .+|...|.+++|+|+  +.+|++
T Consensus       153 ~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          153 SQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAVL-------------NGHEGTVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEEE-------------CCCSSCEEEEEECCSSSSCEEEE
T ss_pred             CCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEEc-------------cCCCCcEEEEEecCCCCeeEEEE
Confidence            9999999999999 9999999999999999876421  111333             345889999999998  678888


Q ss_pred             ecC-CeEEEEECCCCC-------cceeEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          265 RDY-MNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      ++. ++|++||++...       .....+.. |...+               .+++|++++ +|++++.||.|++||..+
T Consensus       217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             EeCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence            865 999999986411       12222222 44332               799999765 789999999999999886


Q ss_pred             CCC--ceeEEecCCC-CccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          336 GSA--GGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       336 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      +..  ....+.+|.. .+..++|+|...+.     .|++|+.|+. ++|+.
T Consensus       281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-----~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          281 GEWKVFAKRALCHGVYEINVVKWLELNGKT-----ILATGGDDGIVNFWSL  326 (330)
T ss_dssp             TEEEEEEEESCTTTTSCEEEEEEC-----C-----CEEEEETTSEEEEEEC
T ss_pred             CceEEEeccccccccceEEEEEEecCCCce-----EEEEecCCCcEEEEEe
Confidence            531  1233467877 89999999842233     8999999999 99943

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.5e-34  Score=256.60  Aligned_cols=296  Identities=16%  Similarity=0.132  Sum_probs=203.5

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|.+.|++++|  +|++++|++|+.||+|++||+.++...                                       
T Consensus         8 ~gH~~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------   46 (351)
T 3f3f_A            8 SGHDDLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSN---------------------------------------   46 (351)
T ss_dssp             CCCSSCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCC---------------------------------------
T ss_pred             cccccceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCc---------------------------------------
Confidence            479999999999  789999999999999999999864310                                       


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCc--------eeeeeeec
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD--------QCFNIVDM  178 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~--------~~~~~~~~  178 (421)
                                       .++...+ .+|...|.+++|+|  ++++|+++ .|++|++||++...        +....   
T Consensus        47 -----------------~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~---  105 (351)
T 3f3f_A           47 -----------------WELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCT---  105 (351)
T ss_dssp             -----------------EEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEE---
T ss_pred             -----------------ceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeee---
Confidence                             0333445 78999999999999  69999999 99999999998432        22333   


Q ss_pred             CCCCCCccCCCeeEEEEecC--CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          179 KPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       179 ~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                          +..|...|.+++|+|+  + .+|++++.|+.|++||+++++..    ..+...............|...+.+++|+
T Consensus       106 ----~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (351)
T 3f3f_A          106 ----LNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIPPANHLQSDFCLSWC  176 (351)
T ss_dssp             ----ECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCCCSSCSCCCEEEEEC
T ss_pred             ----ecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccccCCcccceeEEEec
Confidence                3679999999999999  8 99999999999999999987643    22221011111111223567889999999


Q ss_pred             CC---CCEEEEecC-CeEEEEECCCCCcc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCC----CEEEEeeCCC
Q 014644          257 ND---GQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGSYSN  326 (421)
Q Consensus       257 ~~---~~~l~~~~~-~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~----~~l~~~s~dg  326 (421)
                      |+   +.++++++. +.+.+|+... +..  +..+.+|...+               .+++|+|++    ++|++|+.||
T Consensus       177 p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          177 PSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCCSSCSSEEEEEEETTS
T ss_pred             cCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCCCCCcceEEEEEcCCC
Confidence            97   889998876 8887777654 443  55566666654               799999998    8999999999


Q ss_pred             eEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-----ccCC--CCCccccccccccCeEEE
Q 014644          327 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-----HENS--SSGHHELSYNLSSKLLHL  399 (421)
Q Consensus       327 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-----~iw~--~~~~~~~~~~~~~~v~~~  399 (421)
                      .|++||+..+.. ......+..........+.       ...++.+..++.     .+|.  ....+....+|...|+++
T Consensus       241 ~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  312 (351)
T 3f3f_A          241 RIRIFKITEKLS-PLASEESLTNSNMFDNSAD-------VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV  312 (351)
T ss_dssp             CEEEEEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEE
T ss_pred             eEEEEeCCCCcC-ccccCCcccceeccCCCcc-------cccccccccccccceeeeecccccccEEEEEecccccEEEE
Confidence            999999987622 2222222222222222222       112333332222     3442  123444566789999999


Q ss_pred             EEccCCCeEEEec-CCceEEEe
Q 014644          400 AWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       400 ~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +|+|++++||+++ ++.+++|+
T Consensus       313 ~~s~~~~~l~s~~~dg~v~iw~  334 (351)
T 3f3f_A          313 SWNLTGTILSSAGDDGKVRLWK  334 (351)
T ss_dssp             EECSSSCCEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEecCCCcEEEEe
Confidence            9999999999999 55699997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=257.65  Aligned_cols=267  Identities=15%  Similarity=0.132  Sum_probs=196.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecC-CCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...|++++|  +|++++|++|+.|++|+|||+..+......... |..            .+.++.+++++.+++.+
T Consensus        58 ~~h~~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~------------~v~~v~~sp~~~~l~s~  123 (345)
T 3fm0_A           58 EGHQRTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN------------EVKSVAWAPSGNLLATC  123 (345)
T ss_dssp             SSCSSCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS------------CEEEEEECTTSSEEEEE
T ss_pred             cccCCcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC------------CceEEEEeCCCCEEEEE
Confidence            479999999999  799999999999999999999887644443333 334            45566666677777777


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                      +.  ++.+++|++.......++..+ .+|...|.+++|+|++++|+++ .|++|++||.+ .+......     ++.+|.
T Consensus       124 s~--D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~~-----~~~~h~  194 (345)
T 3fm0_A          124 SR--DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCA-----TLEGHE  194 (345)
T ss_dssp             ET--TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEEE-----EECCCS
T ss_pred             EC--CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEEE-----EecCCC
Confidence            66  678999999877656777788 8999999999999999999999 99999999998 33322111     237899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccc-ccccceeEEEEcCCCCEEEEec
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ..|.+++|+|++ ++|++++.|++|++||.......... ..... .........+. .|...|.+++|+|++..|++++
T Consensus       195 ~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  271 (345)
T 3fm0_A          195 STVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC  271 (345)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence            999999999999 99999999999999997543211000 00000 00000000111 2678899999999999999886


Q ss_pred             C-CeEEEEECCCCC---cceeE-----EeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEeeCCCeEEEEecCCC
Q 014644          267 Y-MNLKLWDIRMDS---TPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       267 ~-~~i~i~d~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s~dg~i~iwd~~~~  336 (421)
                      . +.|++|+.....   .+...     ..+|...+               .+++|+|++ .+|++|+.||.|++|++.+.
T Consensus       272 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          272 GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            5 999999986421   11111     12444433               899999987 59999999999999999876


Q ss_pred             C
Q 014644          337 S  337 (421)
Q Consensus       337 ~  337 (421)
                      +
T Consensus       337 ~  337 (345)
T 3fm0_A          337 E  337 (345)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-34  Score=264.70  Aligned_cols=259  Identities=14%  Similarity=0.152  Sum_probs=204.6

Q ss_pred             eEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE
Q 014644          117 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  195 (421)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  195 (421)
                      ..|+....   .+.+.+ .+|.+.|++++|+|++++|++| .|++|++||+. .++....+       ..|...|.+++|
T Consensus        49 ~~~~~~~~---~~~~~l-~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~-------~~h~~~v~~~~~  116 (380)
T 3iz6_a           49 VSFNPTDL---VCCRTL-QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAI-------KLHCPWVMECAF  116 (380)
T ss_dssp             CCCCCCCC---EEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE-------ECCCTTCCCCEE
T ss_pred             ccccccee---EEeecc-cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEE-------ecCCCCEEEEEE
Confidence            34444443   777888 9999999999999999999999 99999999998 45555544       678999999999


Q ss_pred             ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC-CEEEEecC-CeEEEE
Q 014644          196 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLW  273 (421)
Q Consensus       196 ~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~-~~i~i~  273 (421)
                      +|++ ++|++++.|+.+++||+........          .......+.+|...+.++.|+|++ ..|++++. ++|++|
T Consensus       117 s~~g-~~las~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w  185 (380)
T 3iz6_a          117 APNG-QSVACGGLDSACSIFNLSSQADRDG----------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW  185 (380)
T ss_dssp             CTTS-SEEEECCSSSCCEEEECCCCSSCCC----------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred             CCCC-CEEEEeeCCCcEEEEECCCCccccC----------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence            9999 9999999999999999976432111          011122356678999999999974 56888865 999999


Q ss_pred             ECCCCCcceeEE-----eeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          274 DIRMDSTPVATF-----KIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       274 d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      |+++ ++.+..+     .+|...               +.+++|+| ++.+|++|+.||.|++||++........+.+|.
T Consensus       186 d~~~-~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~  249 (380)
T 3iz6_a          186 DVTT-GQRISIFGSEFPSGHTAD---------------VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE  249 (380)
T ss_dssp             CTTT-CCEEEEECCCSSSSCCSC---------------EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred             EcCC-CcEEEEeecccCCCCccC---------------eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence            9987 7776666     334433               37899977 889999999999999999986657788999999


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCCC--CCcccccc-------ccccCeEEEEEccCCCeEEEec-CCce
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSY-------NLSSKLLHLAWHPTTNLIACAN-GNSL  416 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~-------~~~~~v~~~~~spd~~~la~~~-~~~~  416 (421)
                      ..|.+++|+|+       +..|++|+.|+. ++|+.  +..+....       .+...|++++|+|+|++|++|+ ++.+
T Consensus       250 ~~v~~v~~~p~-------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          250 GDINSVKFFPD-------GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             SCCCEEEECTT-------SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             CCeEEEEEecC-------CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence            99999999998       348999999999 99933  22222211       1223589999999999999998 5669


Q ss_pred             EEEeC
Q 014644          417 FFHYA  421 (421)
Q Consensus       417 ~i~~~  421 (421)
                      ++|+.
T Consensus       323 ~vwd~  327 (380)
T 3iz6_a          323 YVWDT  327 (380)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99973

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-34  Score=265.71  Aligned_cols=298  Identities=9%  Similarity=0.036  Sum_probs=208.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +....|.+|+|  +|||+++|+++.|++|+  |...++  .+  ..|...|++++|+            |++        
T Consensus        13 ~~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~--~l--~gh~~~v~~V~Fs------------Pdg--------   64 (588)
T 2j04_A           13 EFEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAK--DI--NCNSKNLFHVKEF------------PLE--------   64 (588)
T ss_dssp             CCSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCS--CC--SSBGGGTEEEEEE------------CCC--------
T ss_pred             HhhccEEEEEE--CCCCCEEEEEcCCceee--cccccc--ee--cCCCccEEEEEEC------------CCC--------
Confidence            34688999999  89999999999999999  644433  22  2355555544443            332        


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC-
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-  188 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-  188 (421)
                       ......+|+.      +....+...|...|.+++|+|+|++||++ .||.|++||.+  . ++..+       . |.. 
T Consensus        65 -~~~~~~~~~~------~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~-~l~~l-------~-~~~~  126 (588)
T 2j04_A           65 -FENKLDFELA------QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--K-MLTNL-------D-SKGN  126 (588)
T ss_dssp             -CCCTTTTSCC------CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT--E-EEEEC-------C-CSSC
T ss_pred             -CcceEEEEeC------CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--c-eeeec-------c-CCCc
Confidence             1223333432      22233322668899999999999999999 99999999965  2 44332       4 443 


Q ss_pred             ----CeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc---chhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          189 ----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       189 ----~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                          .+.+++|+|+| ++|++|+.||+|++||+..+.....   ....+..|         ..+|...|.+++|+||| +
T Consensus       127 ~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg-L  195 (588)
T 2j04_A          127 LSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV-L  195 (588)
T ss_dssp             STTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE-E
T ss_pred             cccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc-E
Confidence                59999999999 9999999999999999988642110   11233221         23457899999999999 5


Q ss_pred             EEEecCCeEEEEECCCCCcc---eeEEe-eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          262 LLSRDYMNLKLWDIRMDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       262 l~~~~~~~i~i~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      ++++.|+.|++||+.. +..   ..++. +|...+               .+++|+  |++||+++ ++.|++||+.++ 
T Consensus       196 aass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~-  255 (588)
T 2j04_A          196 VAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNY-  255 (588)
T ss_dssp             EEEETTCCEEEECCCS-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTT-
T ss_pred             EEEeCCCeEEEEECCC-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCC-
Confidence            5555669999999975 442   34553 565544               789999  68899887 699999999976 


Q ss_pred             CceeEEecCCCCccceee--ecCCcccccccceeeeecccCc------------------------ccCCCCCccccccc
Q 014644          338 AGGITVEAGKNENRKPIL--QAAPRARRSSLSNLTRGLYRQA------------------------HENSSSGHHELSYN  391 (421)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~d~~------------------------~iw~~~~~~~~~~~  391 (421)
                      .......+|.+.+..+.+  +++       ...|++++.+|.                        ++|...+.......
T Consensus       256 ~~~~~~~gh~~~V~~va~~~s~d-------~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~  328 (588)
T 2j04_A          256 SISSLKTGSLENFHIIPLNHEKE-------STILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE  328 (588)
T ss_dssp             EEEEEECSCCSCCCEEEETTCSS-------CEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC
T ss_pred             eEEEEEcCCCceEEEEEeeeCCC-------CCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec
Confidence            332333389999999999  777       236666665554                        44522211122223


Q ss_pred             cccCeEEEEEccCCCeEEEec
Q 014644          392 LSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       392 ~~~~v~~~~~spd~~~la~~~  412 (421)
                      ....|.+++|||||+.+|+++
T Consensus       329 ~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          329 TTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             CEEEEEEEEECTTSSEEEEEE
T ss_pred             cceEEEEEEECCCCCEEEEEE
Confidence            355699999999999999987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-33  Score=260.13  Aligned_cols=248  Identities=18%  Similarity=0.296  Sum_probs=195.7

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      ..|++++|  +|++++|++|+.|++|+|||+.+++                                             
T Consensus       124 ~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------------------------  156 (393)
T 1erj_A          124 LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRK---------------------------------------------  156 (393)
T ss_dssp             CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE---------------------------------------------
T ss_pred             eeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc---------------------------------------------
Confidence            35999999  7999999999999999999998754                                             


Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                                     ++..+ .+|...|.+++|+|++++|+++ .|++|++||++ .+++...+        .+...+.+
T Consensus       157 ---------------~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~--------~~~~~v~~  211 (393)
T 1erj_A          157 ---------------IVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL--------SIEDGVTT  211 (393)
T ss_dssp             ---------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------ECSSCEEE
T ss_pred             ---------------EEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEE--------EcCCCcEE
Confidence                           22334 7899999999999999999999 99999999998 45554443        25567999


Q ss_pred             EEEec-CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          193 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       193 ~~~~p-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      ++|+| ++ .+|++++.|+.|++||++++....    .+..      ......+|...|.+++|+|+|++|++++. +.|
T Consensus       212 ~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~----~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v  280 (393)
T 1erj_A          212 VAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVE----RLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  280 (393)
T ss_dssp             EEECSTTC-CEEEEEETTSCEEEEETTTCCEEE----EEC------------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCCC-CEEEEEcCCCcEEEEECCCCcEEE----eecc------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            99999 67 999999999999999998875431    1111      00112456889999999999999999876 999


Q ss_pred             EEEECCCC-----------CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          271 KLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       271 ~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      ++||++..           +.+...+.+|...+               .+++|+|++++|++|+.||.|++||+.++ ..
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~  344 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGVLFWDKKSG-NP  344 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEEEEEETTTC-CE
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeEEEEECCCC-eE
Confidence            99999752           12334555666543               79999999999999999999999999987 66


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ...+.+|...+..+++++...- ......|++|+.|+. ++|+
T Consensus       345 ~~~l~~h~~~v~~v~~~~~~~~-~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          345 LLMLQGHRNSVISVAVANGSSL-GPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             EEEEECCSSCEEEEEECSSCTT-CTTCEEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCCEEEEEecCCcCc-CCCCCEEEEECCCCcEEECc
Confidence            7889999999999999863100 001348999999999 9993

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-33  Score=257.34  Aligned_cols=311  Identities=9%  Similarity=-0.013  Sum_probs=206.7

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCC-------cEEEeecCCce------eEEe---eecCCCCCcccccccccccceeec
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDK-------TIKLWKVRDQK------VKKI---KEMDHFPFVSSENTLLAEKNFMNE   96 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~-------~v~lwd~~~~~------~~~~---~~~~~~~~v~~~~~~~~~~~~~~~   96 (421)
                      .-+|.+++|  +|++.+|++|+.|.       .|++|++....      +...   ....+...|.++++.   +..+..
T Consensus        14 g~PV~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV   88 (365)
T ss_dssp             SSCEEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred             CCCEEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence            458999999  58899999997643       59999987653      1111   112233334444332   233333


Q ss_pred             cCCCCceeeeecccccccceeEEeecccce-eeeeeee----cCCCCcceEEEeecCCCCEEEE--E-cCCcEEEEeCCC
Q 014644           97 HNPPSFAHGYHLEWTENMATKIANVGNSVH-ARCQKVY----PHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEI  168 (421)
Q Consensus        97 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~h~~~v~~l~~~~~~~~l~s--~-~d~~i~lwd~~~  168 (421)
                      ..+.....+..++.  +..+++|+...... .+.....    ...+...+++++|+|||++|++  + .|++|+|||++ 
T Consensus        89 g~~~~~~~l~s~~~--d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-  165 (365)
T 4h5i_A           89 GCNENSTKITQGKG--NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-  165 (365)
T ss_dssp             ECCCCHHHHHHTSC--CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-
T ss_pred             EECCCccEEEEecC--CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-
Confidence            33344444444433  45789998765421 1222211    1234556899999999999864  4 68999999998 


Q ss_pred             CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc
Q 014644          169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  248 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  248 (421)
                      ..++...+        .|...|.+++|+|++ ++|++++.++ +++|+..++.....  ...             ..|..
T Consensus       166 ~~~~~~~~--------~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~~--~~~-------------~~~~~  220 (365)
T 4h5i_A          166 DLTEKFEI--------ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIAR--KTD-------------FDKNW  220 (365)
T ss_dssp             TTEEEEEE--------ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEEE--ECC-------------CCTTE
T ss_pred             CCcEEEEe--------CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCcceee--eec-------------CCCCC
Confidence            45555443        367789999999999 9999988555 66666665543211  111             23467


Q ss_pred             ceeEEEEcCCCCEEEEecC-C----eEEEEECCCCCcc----eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644          249 SISDIKFANDGQHLLSRDY-M----NLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  319 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~~-~----~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  319 (421)
                      .+.+++|+|+++++++++. +    .+++|++.. ...    ...+.+|...+               ++++|+|+|++|
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~l  284 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELA  284 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSCE---------------EEEEECTTSCEE
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCCe---------------EeEEECCCCCce
Confidence            8999999999999998753 3    688888864 322    23345555543               799999999999


Q ss_pred             EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEE
Q 014644          320 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLH  398 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~  398 (421)
                      |+|+.|++|+|||+++++.....+.+|..+|.+++|+|+  ++     +|++|+.|++ +||+..............+..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd--g~-----~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~k  357 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD--ST-----YVASVSAANTIHIIKLPLNYANYTSMKQKISK  357 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT--SC-----EEEEEETTSEEEEEECCTTTTC----------
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC--CC-----EEEEEeCCCeEEEEEcCCCCcCccCcccccee
Confidence            999999999999999884444456899999999999999  44     9999999999 999554333333333333433


Q ss_pred             E
Q 014644          399 L  399 (421)
Q Consensus       399 ~  399 (421)
                      +
T Consensus       358 l  358 (365)
T 4h5i_A          358 L  358 (365)
T ss_dssp             -
T ss_pred             e
Confidence            3

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4e-33  Score=252.25  Aligned_cols=242  Identities=14%  Similarity=0.164  Sum_probs=195.3

Q ss_pred             eeeeeecCCCCcceEEEee-----cC-CCCEEEEE-cCCcEEEEeCCCCc------eeeeeeecCCCCCCccCCCeeEEE
Q 014644          128 RCQKVYPHAHDFNINSISN-----NS-DCETFVSA-DDLRINLWNLEISD------QCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~-----~~-~~~~l~s~-~d~~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      ++...+ .+|.+.|++++|     ++ ++++|++| .|++|++||+....      ....       .+.+|...|.+++
T Consensus        12 ~~~~~l-~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~-------~l~~h~~~V~~~~   83 (343)
T 2xzm_R           12 VKRGIL-EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK-------ALTGHNHFVSDLA   83 (343)
T ss_dssp             EEEEEE-ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEE-------EECCCSSCEEEEE
T ss_pred             eeeeee-ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccc-------hhccCCCceEEEE
Confidence            556667 899999999999     76 89999999 99999999987322      1222       3478999999999


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW  273 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~  273 (421)
                      |+|++ .++++++.|++|++||+++++..    ..+..             |...|.+++|+|++++|++++. +.|++|
T Consensus        84 ~~~~~-~~l~s~s~D~~v~lwd~~~~~~~----~~~~~-------------h~~~v~~v~~sp~~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           84 LSQEN-CFAISSSWDKTLRLWDLRTGTTY----KRFVG-------------HQSEVYSVAFSPDNRQILSAGAEREIKLW  145 (343)
T ss_dssp             ECSST-TEEEEEETTSEEEEEETTSSCEE----EEEEC-------------CCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred             ECCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEcC-------------CCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence            99999 99999999999999999987543    33344             4889999999999999999875 999999


Q ss_pred             ECCCCCcceeEEe---eccCcccccccccCCCcceeeeEEEEcCCC----------CEEEEeeCCCeEEEEecCCCCCce
Q 014644          274 DIRMDSTPVATFK---IHEHLRPKLCDLYNNDSIFDKFECSVSGDG----------LHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       274 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~----------~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      |+..  .......   .|...+               .+++|+|++          .++++++.||.|++||..  ....
T Consensus       146 d~~~--~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~  206 (343)
T 2xzm_R          146 NILG--ECKFSSAEKENHSDWV---------------SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIR  206 (343)
T ss_dssp             ESSS--CEEEECCTTTSCSSCE---------------EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEE
T ss_pred             eccC--CceeeeecccCCCcee---------------eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Ccee
Confidence            9963  2222222   333322               789999986          799999999999999943  3567


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCCCeEEEecCCceE
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF  417 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~  417 (421)
                      ..+.+|...+..++|+|+  +.     +|++|+.|+. ++|+.  .........+...|.+++|+|++++|+++.+++++
T Consensus       207 ~~~~~h~~~v~~~~~s~~--g~-----~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~  279 (343)
T 2xzm_R          207 YTFKAHESNVNHLSISPN--GK-----YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVK  279 (343)
T ss_dssp             EEEECCSSCEEEEEECTT--SS-----EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEE
T ss_pred             EEEcCccccceEEEECCC--CC-----EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEE
Confidence            788999999999999998  33     8999999999 99954  22233333456679999999999999999999999


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      +|+.
T Consensus       280 iw~~  283 (343)
T 2xzm_R          280 IFNL  283 (343)
T ss_dssp             EEES
T ss_pred             EEEe
Confidence            9973

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.3e-35  Score=260.50  Aligned_cols=249  Identities=13%  Similarity=0.094  Sum_probs=187.2

Q ss_pred             eeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEec--CCCCeEEEE
Q 014644          131 KVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYS  206 (421)
Q Consensus       131 ~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~  206 (421)
                      +.+..+|.+.|++++|+|+|++|++| .|++|+|||+..... ....       +.+|...|.+++|+|  ++ .+|+++
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-------l~gH~~~V~~v~~~~~~~~-~~l~s~   77 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-------LRGHEGPVWQVAWAHPMYG-NILASC   77 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-------EECCSSCEEEEEECCGGGS-SCEEEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-------EcCCCccEEEEEeCCCCCC-CEEEEE
Confidence            33347999999999999999999999 999999999984322 2333       378999999999986  36 899999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCCcc--
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTP--  281 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~~~--  281 (421)
                      +.|++|++||++++...  ....+             .+|...|.+++|+|+  +.+|++++. +.|++||++.....  
T Consensus        78 s~D~~v~iWd~~~~~~~--~~~~~-------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWE--KSHEH-------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             ETTSCEEEECCSSSCCC--EEEEE-------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             ECCCEEEEEECCCCcce--EEEEc-------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            99999999999875321  01222             345789999999998  789999876 99999999752221  


Q ss_pred             eeEEeeccCcccccccccCCCcceeeeEEEEcCC-----------------CCEEEEeeCCCeEEEEecCCCC--CceeE
Q 014644          282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----------------GLHFATGSYSNLLRIFSHGVGS--AGGIT  342 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----------------~~~l~~~s~dg~i~iwd~~~~~--~~~~~  342 (421)
                      ...+.+|...+               .+++|+|+                 +++|++|+.|+.|++||++...  .....
T Consensus       143 ~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  207 (316)
T 3bg1_A          143 KKINNAHTIGC---------------NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK  207 (316)
T ss_dssp             CCBTTSSSSCB---------------CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred             eeeeccccCCc---------------ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence            23334455433               67889887                 4789999999999999997543  24567


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC------ccccccccccCeEEEEEccCCCeEEEec-CC
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG------HHELSYNLSSKLLHLAWHPTTNLIACAN-GN  414 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~------~~~~~~~~~~~v~~~~~spd~~~la~~~-~~  414 (421)
                      +.+|...|..++|+|+....   ...|++++.|+. ++|+...      .......|...|.+++|+|++++||+++ ++
T Consensus       208 l~~h~~~V~~v~~sp~~~~~---~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLP---TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCS---CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             cccCCCceEEEEecCCCCCC---CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            88999999999999973100   138999999999 9994322      1122346788999999999999999988 56


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .++||+
T Consensus       285 ~v~lw~  290 (316)
T 3bg1_A          285 KVTLWK  290 (316)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            699996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-33  Score=256.92  Aligned_cols=275  Identities=16%  Similarity=0.215  Sum_probs=215.8

Q ss_pred             ccccc--EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           31 EIEEK--INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        31 ~h~~~--V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      +|...  ++++.|  +  +..+++++.|+.|++||+.+++....                                    
T Consensus        89 ~~~~~~~~~~~~~--s--~~~l~~~~~d~~v~lw~~~~~~~~~~------------------------------------  128 (401)
T 4aez_A           89 GIIDDYYLNLLDW--S--NLNVVAVALERNVYVWNADSGSVSAL------------------------------------  128 (401)
T ss_dssp             TCCCCTTCBCEEE--C--TTSEEEEEETTEEEEEETTTCCEEEE------------------------------------
T ss_pred             CCcCCceEEEEee--c--CCCEEEEECCCeEEEeeCCCCcEeEe------------------------------------
Confidence            55544  455666  3  35688899999999999988652221                                    


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                              +...|...|.+++|+|++++|++| .||.|++||+. .++....+       .+|.
T Consensus       129 ------------------------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-------~~~~  176 (401)
T 4aez_A          129 ------------------------AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKLRTM-------AGHQ  176 (401)
T ss_dssp             ------------------------EECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE-------CCCS
T ss_pred             ------------------------eecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEEEEe-------cCCC
Confidence                                    113478899999999999999999 99999999998 45555544       6899


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..|.+++|+  + ..|++++.||.|++||++.....   ...+             ..|...|.+++|+|++++|++++.
T Consensus       177 ~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          177 ARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQ---IGTL-------------QGHSSEVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             SCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCE---EEEE-------------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEEC--C-CEEEEEcCCCCEEEEecccCcce---eeEE-------------cCCCCCeeEEEEcCCCCEEEEEeC
Confidence            999999995  4 78999999999999999854321   1233             335889999999999999999876


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEEee--CCCeEEEEecCCCCCceeEE
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGS--YSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~~s--~dg~i~iwd~~~~~~~~~~~  343 (421)
                       +.|++||+++ ++++..+..|...+               .+++|+|++ .++++++  .|+.|++||+.++ .....+
T Consensus       238 d~~v~iwd~~~-~~~~~~~~~~~~~v---------------~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~  300 (401)
T 4aez_A          238 DNVVQIWDARS-SIPKFTKTNHNAAV---------------KAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTV  300 (401)
T ss_dssp             TSCEEEEETTC-SSEEEEECCCSSCC---------------CEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEE
T ss_pred             CCeEEEccCCC-CCccEEecCCcceE---------------EEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEE
Confidence             9999999986 78888887777755               799999976 5566655  7999999999987 445555


Q ss_pred             ecCCCCccceeeecCCcccccccceeee--ecccCc-ccCCCCC--c--cccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTR--GLYRQA-HENSSSG--H--HELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~d~~-~iw~~~~--~--~~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      . +...+..++|+++  +.     .|++  |+.|+. ++|+...  .  .....+|...|.+++|+|++++|++++ ++.
T Consensus       301 ~-~~~~v~~~~~s~~--~~-----~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          301 D-AGSQVTSLIWSPH--SK-----EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             E-CSSCEEEEEECSS--SS-----EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             e-CCCcEEEEEECCC--CC-----eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            4 6678999999998  33     6776  668999 9994322  2  223457889999999999999999998 566


Q ss_pred             eEEEeC
Q 014644          416 LFFHYA  421 (421)
Q Consensus       416 ~~i~~~  421 (421)
                      +++|+.
T Consensus       373 i~iw~~  378 (401)
T 4aez_A          373 LKFWRV  378 (401)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.3e-33  Score=247.64  Aligned_cols=243  Identities=19%  Similarity=0.326  Sum_probs=199.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|++++|  +|++++|++++.|++|++||+.+++                                          
T Consensus        63 ~h~~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~------------------------------------------   98 (312)
T 4ery_A           63 GHKLGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGK------------------------------------------   98 (312)
T ss_dssp             CCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCC------------------------------------------
T ss_pred             cCCCceEEEEE--cCCCCEEEEECCCCEEEEEECCCCc------------------------------------------
Confidence            68899999999  7899999999999999999998753                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        ++..+ .+|...|.+++|+|++++|+++ .|++|++||++ .++....+       ..|..+
T Consensus        99 ------------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~-------~~~~~~  151 (312)
T 4ery_A           99 ------------------CLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTL-------PAHSDP  151 (312)
T ss_dssp             ------------------EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEE-------CCCSSC
T ss_pred             ------------------EEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEe-------cCCCCc
Confidence                              22334 6889999999999999999999 99999999998 45555544       678899


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |.+++|+|++ .+|++++.|+.|++||+++++..    ..+.            ..+...+..++|+|++++|++++. +
T Consensus       152 v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          152 VSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI------------DDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC------------CSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe------------ccCCCceEEEEECCCCCEEEEEcCCC
Confidence            9999999999 99999999999999999986543    1111            112567899999999999999876 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .|++||+++ ++.+..+.+|......+            ......+++++|++|+.||.|++||+.++ .....+.+|.+
T Consensus       215 ~i~iwd~~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~  280 (312)
T 4ery_A          215 TLKLWDYSK-GKCLKTYTGHKNEKYCI------------FANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTD  280 (312)
T ss_dssp             EEEEEETTT-TEEEEEECSSCCSSSCC------------CEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEECCCSS
T ss_pred             eEEEEECCC-CcEEEEEEecCCceEEE------------EEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhccCC
Confidence            999999986 88888887776543111            22233467899999999999999999987 67889999999


Q ss_pred             CccceeeecCCcccccccceeeeec--ccCc-ccCCC
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGL--YRQA-HENSS  382 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~--~d~~-~iw~~  382 (421)
                      .+..++|+|+       ...|++++  .|+. ++|..
T Consensus       281 ~v~~~~~~p~-------~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          281 VVISTACHPT-------ENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CEEEEEECSS-------SSEEEEEECTTTCCEEEEEC
T ss_pred             cEEEEeecCc-------CCceEEEEccCCccEEEecC
Confidence            9999999998       33788775  6888 99943

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.1e-33  Score=252.45  Aligned_cols=249  Identities=10%  Similarity=0.097  Sum_probs=202.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      ...+.+ .+|.+.|++++|+|++++|++| .|++|++||..+ ......+       ..|...|.+++|+|++ ..|+++
T Consensus        55 ~~~~~l-~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~-------~~~~~~v~~~~~sp~g-~~lasg  124 (354)
T 2pbi_B           55 KTRRTL-KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAV-------TMPCTWVMACAYAPSG-CAIACG  124 (354)
T ss_dssp             CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-------ECSSSCCCEEEECTTS-SEEEEE
T ss_pred             EEEEEe-cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEE-------ecCCCCEEEEEECCCC-CEEEEe
Confidence            455667 8999999999999999999999 999999999984 4444433       5577889999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|+.+++|++........           ......+..|...|.+++|+|++..|++++. ++|++||+++ ++.+..+
T Consensus       125 ~~d~~i~v~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~~~  192 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNENM-----------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSF  192 (354)
T ss_dssp             STTSEEEEEECCCCTTCCS-----------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEE
T ss_pred             eCCCCEEEEEEeccccccc-----------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEEEE
Confidence            9999999999875421100           0011123456889999999999999999876 9999999987 8888999


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      .+|...+               .+++|+|  ++++|++|+.||.|++||++++ .....+.+|...+.+++|+|+     
T Consensus       193 ~~h~~~v---------------~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~-----  251 (354)
T 2pbi_B          193 HGHGADV---------------LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPS-----  251 (354)
T ss_dssp             ECCSSCE---------------EEEEECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTT-----
T ss_pred             cCCCCCe---------------EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCC-----
Confidence            9888754               6788877  5789999999999999999987 667889999999999999998     


Q ss_pred             cccceeeeecccCc-ccCCCC--Cccccc--cccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          364 SSLSNLTRGLYRQA-HENSSS--GHHELS--YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw~~~--~~~~~~--~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                        ...|++|+.|+. ++|+..  ......  ..+...+.+++|+|++++|++|+ ++.+++|+.
T Consensus       252 --~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          252 --GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             --SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             --CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence              348999999999 999432  222211  12345789999999999999998 557999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.8e-33  Score=252.17  Aligned_cols=270  Identities=9%  Similarity=0.027  Sum_probs=215.1

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.+.|++++|  +|++.+|++++.|+.|++||+.++...                                        
T Consensus         9 ~h~~~v~~~~~--s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------------------------   46 (342)
T 1yfq_A            9 APKDYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKN----------------------------------------   46 (342)
T ss_dssp             CCSSCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred             CCCCcEEEEEE--cCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence            78999999999  578999999999999999998765300                                        


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeC-CCCceeeeeeecCCCCCCc--
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--  185 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~-~~~~~~~~~~~~~~~~~~~--  185 (421)
                                       .....+ .+|...|.+++|+|+++ +|+++ .|+.|++||+ . .++. ..       +.+  
T Consensus        47 -----------------~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~-~~-------~~~~~   99 (342)
T 1yfq_A           47 -----------------VDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-SPSF-QA-------LTNNE   99 (342)
T ss_dssp             -----------------EEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-SSSE-EE-------CBSCC
T ss_pred             -----------------ccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-CCce-Ee-------ccccC
Confidence                             111222 47889999999999999 99998 9999999999 7 3433 22       366  


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc---------ccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                      |...|.+++|+| + ..|++++.|+.|++||+++         ++..    ..+.              |...+.+++|+
T Consensus       100 ~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~--------------~~~~v~~~~~~  159 (342)
T 1yfq_A          100 ANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTK--------------VKNKIFTMDTN  159 (342)
T ss_dssp             CCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSS--------------SCCCEEEEEEC
T ss_pred             CCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEEe--------------eCCceEEEEec
Confidence            999999999999 7 9999999999999999886         3322    2222              36789999999


Q ss_pred             CCCCEEEEecC-CeEEEEECCC-CCccee-EEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEe
Q 014644          257 NDGQHLLSRDY-MNLKLWDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       257 ~~~~~l~~~~~-~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd  332 (421)
                      |++  +++++. +.|++||++. ...... ....+...+               .+++|+| +++++++++.||.|++|+
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i---------------~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI---------------RDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCE---------------EEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCce---------------eEEEECCCCCCEEEEEecCCcEEEEE
Confidence            988  666654 9999999985 333222 222333332               7999999 999999999999999999


Q ss_pred             cCCC-----CCceeEEecCCC---------CccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccccc-cc
Q 014644          333 HGVG-----SAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SS  394 (421)
Q Consensus       333 ~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~-~~  394 (421)
                      ++..     ......+..|..         ++..++|+|+  +     .+|++++.|+. ++|  ..++.+....+| ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR--H-----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT--T-----CCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCC--C-----CEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence            9876     366778888866         9999999998  3     38999999999 999  334555666677 89


Q ss_pred             CeEEEEEccCCCeEEEecCCc
Q 014644          395 KLLHLAWHPTTNLIACANGNS  415 (421)
Q Consensus       395 ~v~~~~~spd~~~la~~~~~~  415 (421)
                      .|.+++  |++++|++++.|+
T Consensus       296 ~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          296 SVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEEEEE--ECSSEEEEEEECT
T ss_pred             CceEec--CCCCeEEEEecCC
Confidence            999999  9999999998554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=253.89  Aligned_cols=337  Identities=15%  Similarity=0.131  Sum_probs=219.3

Q ss_pred             ccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeee------------cCCCCCcccccccccccceeec
Q 014644           30 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKE------------MDHFPFVSSENTLLAEKNFMNE   96 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~   96 (421)
                      .+|.+.|++++|  +| ++++|++|+.||+|++||+.+++......            ..+..            .+.++
T Consensus        40 ~~h~~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~  105 (408)
T 4a11_B           40 RIHGGGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY------------SVETV  105 (408)
T ss_dssp             CCCSSCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS------------CEEEE
T ss_pred             eccCCcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC------------cEEEE
Confidence            369999999999  78 89999999999999999998876221111            11344            44445


Q ss_pred             cCCC-CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC---CCEEEEE-cCCcEEEEeCCCCce
Q 014644           97 HNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQ  171 (421)
Q Consensus        97 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~-~d~~i~lwd~~~~~~  171 (421)
                      .+.+ ....++.++.  ++.+++|++...   ++...+  .+...+.++.++|.   +.+++++ .|+.|++||++ .++
T Consensus       106 ~~~~~~~~~l~s~~~--d~~i~iwd~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~  177 (408)
T 4a11_B          106 QWYPHDTGMFTSSSF--DKTLKVWDTNTL---QTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGS  177 (408)
T ss_dssp             EECTTCTTCEEEEET--TSEEEEEETTTT---EEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSC
T ss_pred             EEccCCCcEEEEEeC--CCeEEEeeCCCC---ccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-Ccc
Confidence            5544 4445555544  568999999887   676666  47788999999884   4589998 99999999998 455


Q ss_pred             eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccc--cccCCCcccccccccc
Q 014644          172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--AESHGSKSFFTEIIAS  249 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h--~~~~~~~~~~~~~~~~  249 (421)
                      ....+       .+|...|.+++|+|++..+|++++.||.|++||++.+....   ..+..+  ............|...
T Consensus       178 ~~~~~-------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          178 CSHIL-------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             CCEEE-------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             eeeee-------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCc
Confidence            55444       67999999999999994469999999999999998865321   222111  1111222334667899


Q ss_pred             eeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644          250 ISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  328 (421)
Q Consensus       250 v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i  328 (421)
                      |.+++|+|++++|++++. +.|++||+++ ++....+..+.......       ..   ........+..+++++.++.|
T Consensus       248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNSKK-------GL---KFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCCSS-------CC---CCEECCSSSSCEEEEEETTEE
T ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccccc-------cc---eeEEecCCCceEEEEecCCEE
Confidence            999999999999999875 9999999986 55443333222111000       00   111222334556777889999


Q ss_pred             EEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEccCC
Q 014644          329 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTT  405 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~spd~  405 (421)
                      ++||+.++ .....+.+|...+..++|+|+       ..+|++|+.||. ++|+.  .+.+.......   ....+.|..
T Consensus       317 ~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~-------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~  385 (408)
T 4a11_B          317 AVYTVYSG-EQITMLKGHYKTVDCCVFQSN-------FQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAF  385 (408)
T ss_dssp             EEEETTTC-CEEEEECCCSSCEEEEEEETT-------TTEEEEEETTSCEEEEEECC-----------------------
T ss_pred             EEEECcCC-cceeeeccCCCeEEEEEEcCC-------CCEEEEECCCCeEEEEeCCCCCccCCCCceE---ecccccccc
Confidence            99999987 778889999999999999998       348999999999 99933  22222211111   122344433


Q ss_pred             Ce--EEEecCCceEEEe
Q 014644          406 NL--IACANGNSLFFHY  420 (421)
Q Consensus       406 ~~--la~~~~~~~~i~~  420 (421)
                      ..  ...+.++.+.+|+
T Consensus       386 ~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          386 EDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             -----------------
T ss_pred             ceeecccCccCceeecC
Confidence            22  2333467799886

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-32  Score=268.06  Aligned_cols=315  Identities=9%  Similarity=0.006  Sum_probs=237.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCc----eeEEeeecCCCCCcccccccccccc-eeeccCCC--Cc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----KVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPP--SF  102 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~--~~  102 (421)
                      ..|...|++++|  +|++++|++++ ++.|++||+.++    +..... ..|..            . +.++.+++  ++
T Consensus        15 ~~~~~~v~~~~~--spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~------------~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           15 STQRNFTTHLSY--DPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGS------------SVVTTVKFSPIKGS   78 (615)
T ss_dssp             CCCTTCCCCCEE--ETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTT------------SCEEEEEECSSTTC
T ss_pred             CCccCceeEEEE--CCCCCEEEEec-CCeEEEEECCCCCCccccceEE-ecCCC------------ceEEEEEECcCCCC
Confidence            367889999999  79999999998 889999999987    422221 12333            4 66666677  77


Q ss_pred             eeeeecccccccceeEEeecccc-----eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC----CcEEEEeCCCCcee
Q 014644          103 AHGYHLEWTENMATKIANVGNSV-----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQC  172 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d----~~i~lwd~~~~~~~  172 (421)
                      .+++.++.  ++.+++|++.+..     ..+.+..+ ..|...|.+++|+|++++|+++ .+    +.|++||..   +.
T Consensus        79 ~~l~s~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~  152 (615)
T 1pgu_A           79 QYLCSGDE--SGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NS  152 (615)
T ss_dssp             CEEEEEET--TSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CE
T ss_pred             CEEEEecC--CCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---Cc
Confidence            77777765  6789999996431     23566677 7899999999999999999998 66    688888833   33


Q ss_pred             eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc---c
Q 014644          173 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---S  249 (421)
Q Consensus       173 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~---~  249 (421)
                      ...       +.+|...|.+++|+|+++..+++++.|+.|++||+.+++..    ..+..             |..   .
T Consensus       153 ~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~----~~~~~-------------~~~~~~~  208 (615)
T 1pgu_A          153 LGE-------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT-------------HHKQGSF  208 (615)
T ss_dssp             EEE-------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS-------------SSCTTCC
T ss_pred             cee-------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee----eeecc-------------cCCCCce
Confidence            333       37899999999999999448999999999999999886543    33333             366   8


Q ss_pred             eeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcceeEE-e---eccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          250 ISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATF-K---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       250 v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                      |.+++|+|+ +++|++++. +.|++||+++ ++.+..+ .   .|...+               .+++|+ ++++|++++
T Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGI---------------FALSWL-DSQKFATVG  271 (615)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCE---------------EEEEES-SSSEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCce---------------EEEEEc-CCCEEEEEc
Confidence            999999999 999999875 9999999986 7777777 4   566544               799999 999999999


Q ss_pred             CCCeEEEEecCCCCCceeEEecCC----CCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccccccccCe
Q 014644          324 YSNLLRIFSHGVGSAGGITVEAGK----NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKL  396 (421)
Q Consensus       324 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v  396 (421)
                      .||.|++||+.++ .....+..+.    ..+..+.+. +       ...+++++.++. ++|+.  ++......+|...|
T Consensus       272 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v  342 (615)
T 1pgu_A          272 ADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVAT-G-------NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI  342 (615)
T ss_dssp             TTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEEE-E-------TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred             CCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEeC-C-------CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence            9999999999987 5566666663    444455553 2       237888888888 88833  34444555677777


Q ss_pred             EEEEEccCCCeEEEec-CCceEEEe
Q 014644          397 LHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       397 ~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      .+++| |+   |++++ ++.+++|+
T Consensus       343 ~~~~~-~~---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          343 TALTV-NP---LISGSYDGRIMEWS  363 (615)
T ss_dssp             EEEET-TT---TEEEETTSCEEETT
T ss_pred             EEEEe-cC---cEEECCCCeEEEEE
Confidence            77777 66   34333 55566664

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-33  Score=253.42  Aligned_cols=256  Identities=16%  Similarity=0.117  Sum_probs=192.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeec-CCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|++++|  ++++++|++|+.||+|+|||+........... .|...|.+++|.++.          +..+++.+
T Consensus         8 ~~h~~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~l~s~   75 (379)
T 3jrp_A            8 NAHNELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK----------FGTILASC   75 (379)
T ss_dssp             EECCCCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG----------GCSEEEEE
T ss_pred             cCCcccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC----------CCCEEEEe
Confidence            478999999999  78999999999999999999985543333322 355555555554321          14555555


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      +.  ++.+++|++.... ...+..+ .+|...|.+++|+|+  +++|+++ .|+.|++||++........      .+..
T Consensus        76 ~~--dg~v~iwd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~  145 (379)
T 3jrp_A           76 SY--DGKVLIWKEENGR-WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA  145 (379)
T ss_dssp             ET--TSCEEEEEEETTE-EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEEC
T ss_pred             cc--CCEEEEEEcCCCc-eeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecC
Confidence            54  5689999998761 1256666 789999999999999  9999999 9999999999844222211      2367


Q ss_pred             cCCCeeEEEEec-------------CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          186 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       186 ~~~~v~~~~~~p-------------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      |...|.+++|+|             ++ .+|++++.|+.|++||++.+.........+             ..|...|.+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~h~~~v~~  211 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL-------------EGHSDWVRD  211 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEE-------------CCCSSCEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEE-------------ecccCcEeE
Confidence            889999999999             57 899999999999999998754322112222             345889999


Q ss_pred             EEEcCC---CCEEEEecC-CeEEEEECCCCCccee-EE-e--eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          253 IKFAND---GQHLLSRDY-MNLKLWDIRMDSTPVA-TF-K--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       253 ~~~s~~---~~~l~~~~~-~~i~i~d~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      ++|+|+   +++|++++. +.|++||++....... .. .  .+...               +.+++|+|++++|++++.
T Consensus       212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEES
T ss_pred             EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecC
Confidence            999999   899999875 9999999986322211 11 1  12222               279999999999999999


Q ss_pred             CCeEEEEecCCC
Q 014644          325 SNLLRIFSHGVG  336 (421)
Q Consensus       325 dg~i~iwd~~~~  336 (421)
                      ||.|++|++...
T Consensus       277 dg~i~iw~~~~~  288 (379)
T 3jrp_A          277 DNKVTLWKENLE  288 (379)
T ss_dssp             SSSEEEEEEEET
T ss_pred             CCcEEEEeCCCC
Confidence            999999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.4e-32  Score=250.17  Aligned_cols=278  Identities=11%  Similarity=0.130  Sum_probs=222.1

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      ++.|+|  ++ +++||+|. |++|+|||..+++.......+.+.           ..|.++++++++.+++.|+.  ++.
T Consensus       108 ~~~l~w--S~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~-----------~~V~sv~fspdg~~lasgs~--Dg~  170 (420)
T 4gga_A          108 LNLVDW--SS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPG-----------EYISSVAWIKEGNYLAVGTS--SAE  170 (420)
T ss_dssp             CBCEEE--CT-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTT-----------CCEEEEEECTTSSEEEEEET--TSC
T ss_pred             ceeEEE--CC-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCC-----------CcEEEEEECCCCCEEEEEEC--CCe
Confidence            567999  44 45776665 999999999999855444433222           24566666777888888776  678


Q ss_pred             eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      +++|++++.   ++++.+ .+|...+.+++++  +.+|++| .|+.+++||.......+..+       .+|...+..+.
T Consensus       171 v~iWd~~~~---~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~-------~~h~~~~~~~~  237 (420)
T 4gga_A          171 VQLWDVQQQ---KRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLR  237 (420)
T ss_dssp             EEEEETTTT---EEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEE
T ss_pred             EEEEEcCCC---cEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEe-------cccccceeeee
Confidence            999999988   888888 8999999998875  6799999 99999999998555555544       78999999999


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEe--c-CCeE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YMNL  270 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~--~-~~~i  270 (421)
                      |+|++ .++++++.|+.+++||...++........             ...|...|.+++|+|++. +++++  + |+.|
T Consensus       238 ~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~-------------~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          238 WAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT-------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE-------------ECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             ecCCC-CeeeeeeccccceEEeeccccccceeeee-------------ecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence            99999 99999999999999999886533221222             234578999999999765 44443  3 3999


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee--CCCeEEEEecCCCCCceeEEecCCC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      ++||+++ +++...+..+...                .++.|+|+++.+++++  .|+.|+|||+.++ .....+.+|.+
T Consensus       304 ~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~  365 (420)
T 4gga_A          304 RIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTS  365 (420)
T ss_dssp             EEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSS
T ss_pred             EEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCC
Confidence            9999987 8888877766543                6899999999988765  7999999999987 77889999999


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      .|..++|+|+  +     .+|++|+.|+. ++|+.
T Consensus       366 ~V~~l~~spd--g-----~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          366 RVLSLTMSPD--G-----ATVASAAADETLRLWRC  393 (420)
T ss_dssp             CEEEEEECTT--S-----SCEEEEETTTEEEEECC
T ss_pred             CEEEEEEcCC--C-----CEEEEEecCCeEEEEEC
Confidence            9999999998  3     48999999999 99944

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=255.27  Aligned_cols=279  Identities=13%  Similarity=0.155  Sum_probs=220.3

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|++++|  +|++++|++++.||.|++||........+.  .+..            .+.++.++++...+..++.
T Consensus       106 ~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~------------~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          106 KTTNQVTCLAW--SHDGNSIVTGVENGELRLWNKTGALLNVLN--FHRA------------PIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             --CBCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCCS------------CEEEEEECTTSSEEEEEET
T ss_pred             CCCCceEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCeeeecc--CCCc------------cEEEEEECCCCCEEEEEec
Confidence            36889999999  789999999999999999994443333332  2444            3445555556666665554


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcc---------------eEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeee
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  174 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~  174 (421)
                        ++.+++|++.+.   +.+..+ ..+...               +.+++|+|++. ++++ .|+.|++||+. ..+...
T Consensus       170 --d~~i~iwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~-~~~~~~  241 (425)
T 1r5m_A          170 --ENVTILWNVISG---TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQIT-EKTPTG  241 (425)
T ss_dssp             --TCCEEEEETTTT---EEEEEE-CCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETT-CSSCSE
T ss_pred             --CCeEEEEECCCC---cEEEEe-eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcC-CCceee
Confidence              567999999887   777777 666666               99999999865 5666 99999999998 444444


Q ss_pred             eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEE
Q 014644          175 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  254 (421)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  254 (421)
                      .+       ..|...|.+++|+|++ .+|++++.|+.|++||++.++..    ..+..             |...+.+++
T Consensus       242 ~~-------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~  296 (425)
T 1r5m_A          242 KL-------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFYG-------------HSQSIVSAS  296 (425)
T ss_dssp             EE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EEECC-------------CSSCEEEEE
T ss_pred             ee-------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eEecC-------------CCccEEEEE
Confidence            43       6788999999999999 89999999999999999886543    33333             477899999


Q ss_pred             EcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          255 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       255 ~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      |+|++ ++++++. +.|++||+++ ++.+..+..|...+               .+++|+|++++|++++.||.|++||+
T Consensus       297 ~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          297 WVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             EETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            99999 7777765 9999999986 88888888777654               79999999999999999999999999


Q ss_pred             CCCC-------------------CceeEEecCCC--CccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          334 GVGS-------------------AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       334 ~~~~-------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      .++.                   .....+.+|..  .+..+.|+|+  +     .+|++++.|+. ++|+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~-----~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA--G-----NKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT--S-----SEEEEEESSSCCEEEEC
T ss_pred             CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC--C-----ceEEEEecCceEEEEee
Confidence            8763                   16778888976  9999999998  3     38999999998 99943

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=247.68  Aligned_cols=273  Identities=14%  Similarity=0.166  Sum_probs=209.2

Q ss_pred             ccccccEEEEEEEEcCC---CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           30 LEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~---~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      .+|.+.|++++|  +|+   +++|++|+.||.|+|||+.+...                                     
T Consensus        36 ~~h~~~v~~~~~--~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------------------   76 (368)
T 3mmy_A           36 SSPDDSIGCLSF--SPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------------------   76 (368)
T ss_dssp             SCCSSCEEEEEE--CCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------------------
T ss_pred             cCCCCceEEEEE--cCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------------------
Confidence            479999999999  677   69999999999999999987320                                     


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                           .....+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++....        ..
T Consensus        77 ---------------------~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~--------~~  125 (368)
T 3mmy_A           77 ---------------------TIPKAQ-QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS-SNQAIQI--------AQ  125 (368)
T ss_dssp             ---------------------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEE--------EE
T ss_pred             ---------------------eeEEEe-ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC-CCCceee--------cc
Confidence                                 111233 6799999999999999999999 99999999998 5555543        46


Q ss_pred             cCCCeeEEEE--ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          186 LTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       186 ~~~~v~~~~~--~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      |...|.+++|  +|++ .+|++++.|+.|++||+++++..    ..+..              ...+.++.+.+  ..++
T Consensus       126 ~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~--------------~~~~~~~~~~~--~~~~  184 (368)
T 3mmy_A          126 HDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQL--------------PERCYCADVIY--PMAV  184 (368)
T ss_dssp             CSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEEC--------------SSCEEEEEEET--TEEE
T ss_pred             ccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEec--------------CCCceEEEecC--CeeE
Confidence            8999999999  8888 89999999999999999987543    33333              23566666664  3555


Q ss_pred             Ee-cCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE----EEEeeCCCeEEEEecCCCC-
Q 014644          264 SR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH----FATGSYSNLLRIFSHGVGS-  337 (421)
Q Consensus       264 ~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~----l~~~s~dg~i~iwd~~~~~-  337 (421)
                      ++ .++.+++|+++...............              ....+++.++...    +++++.||.|++|+++... 
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccC--------------CCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence            55 44999999998633333322211111              0134555554443    9999999999999998764 


Q ss_pred             -CceeEEecCCC------------CccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEE
Q 014644          338 -AGGITVEAGKN------------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAW  401 (421)
Q Consensus       338 -~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~  401 (421)
                       .....+.+|..            ++..++|+|+  +     .+|++|+.|+. ++|  ..++.+....+|...|.+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  323 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV--H-----GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF  323 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTT--T-----CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecC--C-----CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE
Confidence             34667778876            7999999998  3     38999999999 999  344556666788999999999


Q ss_pred             ccCCCeEEEecCC
Q 014644          402 HPTTNLIACANGN  414 (421)
Q Consensus       402 spd~~~la~~~~~  414 (421)
                      +|++++||+++.+
T Consensus       324 s~~g~~l~~~s~d  336 (368)
T 3mmy_A          324 NHNGNIFAYASSY  336 (368)
T ss_dssp             CTTSSCEEEEECC
T ss_pred             CCCCCeEEEEecc
Confidence            9999999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.5e-31  Score=235.99  Aligned_cols=277  Identities=12%  Similarity=0.154  Sum_probs=203.2

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      +++|+|  +++ ++||+| .|++|+|||+++++.......+.+.           ..+.++.+++++.+++.|+.  ++.
T Consensus        28 ~~~l~W--S~~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~-----------~~V~~v~~~~~~~~l~sgs~--Dg~   90 (318)
T 4ggc_A           28 LNLVDW--SSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPG-----------EYISSVAWIKEGNYLAVGTS--SAE   90 (318)
T ss_dssp             CBCEEE--CTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTT-----------CCEEEEEECTTSSEEEEEET--TSE
T ss_pred             ceEEEE--CCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCC-----------CeEEEEEECCCCCEEEEEEC--CCc
Confidence            477999  555 466655 5999999999998854443332222           24666677777888888776  678


Q ss_pred             eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      +++|+.++.   ++++.+ .+|...+.++.+  ++..++++ .++.+++|+..........+       .+|...+..+.
T Consensus        91 v~iw~~~~~---~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  157 (318)
T 4ggc_A           91 VQLWDVQQQ---KRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL-------SGHSQEVCGLR  157 (318)
T ss_dssp             EEEEETTTT---EEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE-------ECCSSCEEEEE
T ss_pred             EEEeecCCc---eeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE-------cCccCceEEEE
Confidence            999999988   888888 899998877665  56799998 99999999998555555544       78999999999


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE---EecC-CeE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRDY-MNL  270 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~-~~i  270 (421)
                      +++++ .+|++++.|+.|++||+++++........             ...+...+..++++|++..++   +++. +.|
T Consensus       158 ~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i  223 (318)
T 4ggc_A          158 WAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT-------------FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  223 (318)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE-------------ECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred             EcCCC-CEEEEEecCcceeEEECCCCcccccceee-------------ecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence            99999 99999999999999999987543211111             123467899999999866443   3444 899


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee--CCCeEEEEecCCCCCceeEEecCCC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      ++||.+. ......... ...+               ..++|+|++..+++++  .|+.|++||++++ .....+.+|  
T Consensus       224 ~lwd~~~-~~~~~~~~~-~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH--  283 (318)
T 4ggc_A          224 RIWNVCS-GACLSAVDA-HSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGH--  283 (318)
T ss_dssp             EEEETTT-CCEEEEEEC-SSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCC--
T ss_pred             EEEeccc-ccccccccc-eeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCC--
Confidence            9999986 554444433 3322               6889999998887654  7999999999987 444555544  


Q ss_pred             CccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                                                                  ...|++++|+||+++||+|+ ++.|+||+
T Consensus       284 --------------------------------------------~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          284 --------------------------------------------TSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             --------------------------------------------SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             --------------------------------------------CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence                                                        45566677777777777666 34467775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.9e-33  Score=256.00  Aligned_cols=241  Identities=13%  Similarity=0.122  Sum_probs=189.9

Q ss_pred             CCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCc------eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          135 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       135 ~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      .+|.+.|.+++|+| ++++|++| .|++|++||+....      +....       +.+|...|.+++|+|++..+|+++
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT-------LEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE-------EECCSSCEEEEEECSSBTTEEEEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEE-------ecCCCCeEEEEEECcCCCCEEEEE
Confidence            78999999999999 99999999 99999999998432      22332       378999999999999975699999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|+.|++||+++++..    ..+..           ..|...|.+++|+|++++|++++. +.|++||+++ ++.+..+
T Consensus       151 ~~dg~i~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~  214 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAV----LTLGP-----------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVAEK  214 (402)
T ss_dssp             ETTSCEEEEETTTTEEE----EEECT-----------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEE
T ss_pred             cCCCEEEEEECCCCCcc----EEEec-----------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC-Cceeeee
Confidence            99999999999987543    33310           224789999999999999999875 9999999986 7777777


Q ss_pred             -eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe---eCCCeEEEEecCCCCCceeEE-ecCCCCccceeeecCCc
Q 014644          286 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG---SYSNLLRIFSHGVGSAGGITV-EAGKNENRKPILQAAPR  360 (421)
Q Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  360 (421)
                       ..|....              +.+++|+|++++|++|   +.|+.|++||+++........ ..|...+..+.|+|+  
T Consensus       215 ~~~~~~~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--  278 (402)
T 2aq5_A          215 DRPHEGTR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD--  278 (402)
T ss_dssp             ECSSCSSS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT--
T ss_pred             ccCCCCCc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC--
Confidence             5665531              1689999999999999   789999999999875534333 357788999999998  


Q ss_pred             cccccccee-eeecccCc-ccCC--CCCc-ccccc--ccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          361 ARRSSLSNL-TRGLYRQA-HENS--SSGH-HELSY--NLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l-~~g~~d~~-~iw~--~~~~-~~~~~--~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +.     .| ++|+.|+. ++|+  .++. +....  .+...|.+++|+|++.++++ +++.+++|+
T Consensus       279 ~~-----~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~  339 (402)
T 2aq5_A          279 TN-----IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYK  339 (402)
T ss_dssp             TT-----EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEE
T ss_pred             CC-----EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEE
Confidence            33     56 46778998 9993  3332 22333  34589999999999998875 445788886

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.2e-32  Score=252.18  Aligned_cols=267  Identities=15%  Similarity=0.254  Sum_probs=217.5

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|.++.|    +++++++|+.||+|++||+.+++                                          
T Consensus       131 ~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------  164 (435)
T 1p22_A          131 ETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------  164 (435)
T ss_dssp             SSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSCC------------------------------------------
T ss_pred             CCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCe------------------------------------------
Confidence            56677888877    58899999999999999987753                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        ++..+ .+|...|.+++|  ++++|++| .||+|++||+. .++....+       .+|...
T Consensus       165 ------------------~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~~-------~~h~~~  215 (435)
T 1p22_A          165 ------------------CKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLNTL-------IHHCEA  215 (435)
T ss_dssp             ------------------EEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEEEE-------CCCCSC
T ss_pred             ------------------EEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-CCcEEEEE-------cCCCCc
Confidence                              23334 789999999999  78899999 99999999998 55555544       679999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |.+++|++   ..+++++.||.|++||++++.... ....             +.+|...|.+++|  +++++++++. +
T Consensus       216 v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-------------~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          216 VLHLRFNN---GMMVTCSKDRSIAVWDMASPTDIT-LRRV-------------LVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             EEEEECCT---TEEEEEETTSCEEEEECSSSSCCE-EEEE-------------ECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             EEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCce-eeeE-------------ecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            99999974   689999999999999998765321 0011             2345789999999  6889998875 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  348 (421)
                      .|++||+++ ++.+..+.+|...+               .+++|  +++++++|+.||.|++||++++ .....+.+|..
T Consensus       277 ~i~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~  337 (435)
T 1p22_A          277 TIKVWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE  337 (435)
T ss_dssp             EEEEEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSS
T ss_pred             eEEEEECCc-CcEEEEEcCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcC
Confidence            999999987 88888888887754               67777  5789999999999999999987 77888999999


Q ss_pred             CccceeeecCCcccccccceeeeecccCc-ccCCC--CC---------ccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          349 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SG---------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~---------~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      .+.++.+.+.         .|++|+.||. ++|+.  +.         ......+|...|.+++|  +++.|++++ ++.
T Consensus       338 ~v~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          338 LVRCIRFDNK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             CEEEEECCSS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             cEEEEEecCC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence            9999998433         8999999999 99932  11         34456688999999999  788899998 667


Q ss_pred             eEEEeC
Q 014644          416 LFFHYA  421 (421)
Q Consensus       416 ~~i~~~  421 (421)
                      +++|+.
T Consensus       407 i~iwd~  412 (435)
T 1p22_A          407 ILIWDF  412 (435)
T ss_dssp             EEEEC-
T ss_pred             EEEEEC
Confidence            999973

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.4e-32  Score=249.93  Aligned_cols=260  Identities=10%  Similarity=0.047  Sum_probs=163.8

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--------CCCCeEEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--------IYCNLLAY  205 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------~~~~~l~s  205 (421)
                      ..|...+....+.+++.+|+++ .|++|+|||.+ .++......+  ..+.+|.+.|.+++|+|        ++ ++|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las  161 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAE-QVIAS  161 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEE
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeee--cccCCCCCceEEEEEccccccccCCCC-CEEEE
Confidence            4556666666777788899999 99999999998 4433221111  35689999999999998        77 89999


Q ss_pred             EEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEEEecC-CeEEEEECCCCCccee
Q 014644          206 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~  283 (421)
                      ++.|++|++||++++...    ..+..             |...+.+++|+|++. +|++++. ++|++||+++ ++...
T Consensus       162 ~s~D~tv~~Wd~~~~~~~----~~~~~-------------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~  223 (393)
T 4gq1_A          162 VGDDCTLIIWRLTDEGPI----LAGYP-------------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAE  223 (393)
T ss_dssp             EETTSEEEEEEEETTEEE----EEEEE-------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC---
T ss_pred             EECCCeEEEEECCCCcee----eeecC-------------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Ccccc
Confidence            999999999999876533    22222             367899999999875 6888865 9999999986 44333


Q ss_pred             EEeeccCccccc------------c-cccCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCC
Q 014644          284 TFKIHEHLRPKL------------C-DLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE  349 (421)
Q Consensus       284 ~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  349 (421)
                      ....+.......            . .....+.   +.++.|+ |+++.|++++.|+.+++||+..+ .....+..|...
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~  299 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS---LANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMK  299 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSS---CSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred             cccccCCcccceEEecccccceeeeeccccccc---ceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCc
Confidence            222211110000            0 0001112   2678876 79999999999999999999876 444555555554


Q ss_pred             ccceeeecCCccc-------------ccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecC
Q 014644          350 NRKPILQAAPRAR-------------RSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       350 ~~~~~~~~~~~~~-------------~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~  413 (421)
                      +..+.+.++....             ..+..++++|+.|+. ++|  ..++......+|...|++++|||||++||++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            4444433321000             001236788999999 999  445566667788899999999999999999999


Q ss_pred             CceEEEe
Q 014644          414 NSLFFHY  420 (421)
Q Consensus       414 ~~~~i~~  420 (421)
                      +++.+|.
T Consensus       380 ~Gv~lvr  386 (393)
T 4gq1_A          380 GSVLLTR  386 (393)
T ss_dssp             SEEEEEE
T ss_pred             CCeEEEE
Confidence            9998885

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-31  Score=249.14  Aligned_cols=284  Identities=15%  Similarity=0.226  Sum_probs=205.2

Q ss_pred             CCCccccccccccccEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644           21 EPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        21 ~~~~~~~~~~~h~~~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      .+++.....+.|.+.|++++|  +|+ +.+|++++.||.|++||+.+......    . .                    
T Consensus       116 ~~~~~~~~~~~h~~~v~~l~~--~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~-~--------------------  168 (430)
T 2xyi_A          116 CGKIEIEIKINHEGEVNRARY--MPQNACVIATKTPSSDVLVFDYTKHPSKPE----P-S--------------------  168 (430)
T ss_dssp             --CEEEEEEEEESSCCSEEEE--ETTEEEEEEEECSSSCEEEEEGGGSCSSCC----T-T--------------------
T ss_pred             CCceEEEEEEcCCCcEEEEEE--CCCCCcEEEEECCCCcEEEEECCCcccccC----c-c--------------------
Confidence            345666777899999999999  465 78999999999999999976320000    0 0                    


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeee
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~  177 (421)
                              +                 ...++..+ .+|...|.+++|+|++. +|++| .||+|++|++.........+.
T Consensus       169 --------~-----------------~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  222 (430)
T 2xyi_A          169 --------G-----------------ECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID  222 (430)
T ss_dssp             --------C-----------------CCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE
T ss_pred             --------c-----------------cCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec
Confidence                    0                 01444555 78999999999999988 99999 999999999984222111110


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                       ....+.+|...|.+++|+|++..+|++++.|+.|++||++.+... .....+             ..|...|++++|+|
T Consensus       223 -~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~-------------~~~~~~v~~i~~~p  287 (430)
T 2xyi_A          223 -AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTV-------------DAHTAEVNCLSFNP  287 (430)
T ss_dssp             -CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEE-------------ECCSSCEEEEEECS
T ss_pred             -cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEe-------------ecCCCCeEEEEeCC
Confidence             001236799999999999955489999999999999999976311 111222             33578999999999


Q ss_pred             CCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecC
Q 014644          258 DGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG  334 (421)
Q Consensus       258 ~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~  334 (421)
                      +++ ++++++. +.|++||++..+.++..+..|...+               .+++|+|+++ +|++++.||.|+|||+.
T Consensus       288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            987 5777765 9999999987567788888887755               8999999985 69999999999999998


Q ss_pred             CCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCC-eEEEec-
Q 014644          335 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-  412 (421)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~-  412 (421)
                      ..........           ..+.+                      ...+....+|...|.+++|+|+++ +|++++ 
T Consensus       353 ~~~~~~~~~~-----------~~~~~----------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          353 KIGEEQSTED-----------AEDGP----------------------PELLFIHGGHTAKISDFSWNPNEPWIICSVSE  399 (430)
T ss_dssp             GTTCCCCHHH-----------HHHCC----------------------TTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             CCccccCccc-----------cccCC----------------------cceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence            6422110000           00000                      012233346678899999999999 788777 


Q ss_pred             CCceEEEe
Q 014644          413 GNSLFFHY  420 (421)
Q Consensus       413 ~~~~~i~~  420 (421)
                      ++.|.||+
T Consensus       400 dg~i~iw~  407 (430)
T 2xyi_A          400 DNIMQVWQ  407 (430)
T ss_dssp             TSEEEEEE
T ss_pred             CCCEEEeE
Confidence            55699996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-33  Score=253.72  Aligned_cols=240  Identities=10%  Similarity=0.068  Sum_probs=188.1

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ..+.+.|++++|+|++++|+++ .|+.|++||+.... +...       .+.+|...|.+++|+|++ ++|++++.|++|
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v   79 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-------TFSDHDKIVTCVDWAPKS-NRIVTCSQDRNA   79 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-------CBCCCSSCEEEEEECTTT-CCEEEEETTSSE
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-------EEecCCceEEEEEEeCCC-CEEEEEeCCCeE
Confidence            3466789999999999999999 99999999998332 3443       447899999999999999 999999999999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc---ceeEEee-
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST---PVATFKI-  287 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~---~~~~~~~-  287 (421)
                      ++||+.++.... ....+             ..|...|.+++|+|++++|++++. +.|++||++. ++   ....+.. 
T Consensus        80 ~vwd~~~~~~~~-~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~  144 (377)
T 3dwl_C           80 YVYEKRPDGTWK-QTLVL-------------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ-ENDWWVSKHLKRP  144 (377)
T ss_dssp             EEC------CCC-CEEEC-------------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSS
T ss_pred             EEEEcCCCCcee-eeeEe-------------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECC-cccceeeeEeecc
Confidence            999998865110 01122             335789999999999999999876 9999999986 44   4566666 


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-----------------CceeEEecCCCCc
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-----------------AGGITVEAGKNEN  350 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~  350 (421)
                      |...+               .+++|+|++++|++++.||.|++||+....                 .....+ +|...+
T Consensus       145 h~~~v---------------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  208 (377)
T 3dwl_C          145 LRSTI---------------LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV  208 (377)
T ss_dssp             CCSCE---------------EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred             cCCCe---------------EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence            66544               799999999999999999999999986321                 233344 899999


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccC--CCCCc----cccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGH----HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~----~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ..++|+|+  +     .+|++++.|+. ++|  ..++.    +....+|...|.+++|+|++++|++++++++.+|+
T Consensus       209 ~~~~~sp~--~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  278 (377)
T 3dwl_C          209 HAVGFSPS--G-----NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ  278 (377)
T ss_dssp             EEEEECTT--S-----SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred             EEEEECCC--C-----CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence            99999998  3     38999999999 999  33444    55667889999999999999999999999988885

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-30  Score=243.04  Aligned_cols=286  Identities=14%  Similarity=0.129  Sum_probs=211.3

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .+.++.+. ++++++|++|+.|+.|++||+.+++..... ..+..            .+.++.++++..+++.++.  ++
T Consensus        98 ~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~------------~v~~~~~~~~~~~l~s~s~--d~  161 (420)
T 3vl1_A           98 DYTAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVS------------EITKLKFFPSGEALISSSQ--DM  161 (420)
T ss_dssp             CEEEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSS------------CEEEEEECTTSSEEEEEET--TS
T ss_pred             CceEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccC------------ccEEEEECCCCCEEEEEeC--CC
Confidence            44444332 789999999999999999999987643321 23444            4555666666667776665  56


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc-------
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-------  186 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-------  186 (421)
                      .+++|++.+.   ++++.+ .+|...|.+++|+|++++|+++ .|++|++||++ .++....+...    ..+       
T Consensus       162 ~i~iwd~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~~~  232 (420)
T 3vl1_A          162 QLKIWSVKDG---SNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVNSI  232 (420)
T ss_dssp             EEEEEETTTC---CCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEEEE
T ss_pred             eEEEEeCCCC---cCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCccEE
Confidence            8999999887   777888 8999999999999999999999 99999999998 55555554211    123       


Q ss_pred             --------------CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          187 --------------TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       187 --------------~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                                    ...+.+++|+|++ .+|++++.||.|++||+++++...   ...             ..|...+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~---~~~-------------~~~~~~v~~  295 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTI---QLP-------------SKFTCSCNS  295 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEE---EEC-------------CTTSSCEEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeE---Ecc-------------cccCCCcee
Confidence                          3445555667888 899999999999999999875431   111             224678999


Q ss_pred             EEEcCCCC-EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEE
Q 014644          253 IKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI  330 (421)
Q Consensus       253 ~~~s~~~~-~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~i  330 (421)
                      ++|+|+++ +|++++. +.|++||+++...++..+..+....              +..+ +.+++++|++++.||.|++
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEEEE
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccEEE
Confidence            99999999 8888876 9999999987445577777744321              1455 5568889999999999999


Q ss_pred             EecCCCC--------CceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          331 FSHGVGS--------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       331 wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      |++....        .....+.+|...+..++|+|+....    ..+++.+.++. .+|.
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~----g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN----GEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS----CEEEEEETTTEEEEEE
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc----ceEEEEcCCceEEEEe
Confidence            9998742        2244567889999999999983211    13444445555 7773

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-30  Score=245.78  Aligned_cols=274  Identities=12%  Similarity=0.192  Sum_probs=208.5

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|.+++|  ++++ +|++|+.||+|++||+.+++                                          
T Consensus       160 ~h~~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~------------------------------------------  194 (464)
T 3v7d_B          160 GHDGGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGC------------------------------------------  194 (464)
T ss_dssp             CCSSCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTE------------------------------------------
T ss_pred             CCCcCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCc------------------------------------------
Confidence            69999999999  5665 99999999999999998754                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeec--CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC--------
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--------  179 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--------  179 (421)
                                        ++..+ .+|...|.+++|+  +++++|+++ .|++|++||+.............        
T Consensus       195 ------------------~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          195 ------------------CTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             ------------------EEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             ------------------EEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence                              22334 6899999999998  578899999 99999999998433211100000        


Q ss_pred             -------CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          180 -------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       180 -------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                             ...+.+|...+.++  ++++ .++++++.|+.|++||+++++..    ..+..             |...|.+
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~~~-------------~~~~v~~  315 (464)
T 3v7d_B          256 PEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYS  315 (464)
T ss_dssp             GGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEE
T ss_pred             cCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC-------------CCCCEEE
Confidence                   01236788888876  5777 89999999999999999986543    33333             4789999


Q ss_pred             EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                      ++|+|+++++++++. +.|++||+++ ++++..+.+|...+               .+++|+  +++|++++.||.|++|
T Consensus       316 ~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          316 TIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcEEEE
Confidence            999999999999876 9999999987 88899998888765               678886  5799999999999999


Q ss_pred             ecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccc-ccccccCeEEEEEccCCCe
Q 014644          332 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL-SYNLSSKLLHLAWHPTTNL  407 (421)
Q Consensus       332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~-~~~~~~~v~~~~~spd~~~  407 (421)
                      |+.+.. .. ....+...+..+.++++       ..+|++|+ |+. ++|  ..++.+.. ...+...|.+++|+ +..+
T Consensus       378 d~~~~~-~~-~~~~~~~~~~~~~~~~~-------~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l  446 (464)
T 3v7d_B          378 DANDYS-RK-FSYHHTNLSAITTFYVS-------DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTL  446 (464)
T ss_dssp             ETTTCC-EE-EEEECTTCCCEEEEEEC-------SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEE
T ss_pred             ECCCCc-ee-eeecCCCCccEEEEEeC-------CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEE
Confidence            999763 22 22346667778888888       33888888 777 999  34444443 56778899999998 3344


Q ss_pred             EEEecCCceE
Q 014644          408 IACANGNSLF  417 (421)
Q Consensus       408 la~~~~~~~~  417 (421)
                      ++++++++..
T Consensus       447 ~~~~~~~g~~  456 (464)
T 3v7d_B          447 VAAVEKDGQS  456 (464)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEEEeCCeE
Confidence            4455555533

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5e-31  Score=260.87  Aligned_cols=259  Identities=16%  Similarity=0.199  Sum_probs=193.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|++++|  ++++++|++|+.|++|+|||+.++...... ..|..            .+.++.++++...+.+++
T Consensus       427 ~~h~~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~------------~v~~~~~s~~~~~l~s~s  491 (694)
T 3dm0_A          427 TGHSHFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTK------------DVLSVAFSLDNRQIVSAS  491 (694)
T ss_dssp             ECCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSS------------CEEEEEECTTSSCEEEEE
T ss_pred             cCCCCcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCC------------CEEEEEEeCCCCEEEEEe
Confidence            479999999999  799999999999999999999988733222 23444            345555566666677666


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      .  ++.+++|+............. .+|...|.+++|+|++  ..|+++ .|++|++||++ ..++...+       .+|
T Consensus       492 ~--D~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~-------~~h  560 (694)
T 3dm0_A          492 R--DRTIKLWNTLGECKYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRSTL-------AGH  560 (694)
T ss_dssp             T--TSCEEEECTTSCEEEEECSST-TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred             C--CCEEEEEECCCCcceeeccCC-CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEEE-------cCC
Confidence            5  678999997554221222222 5799999999999986  578888 99999999998 55555544       789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..              ...+.+++|+|++.+++++.
T Consensus       561 ~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          561 TGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAAT  621 (694)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred             CCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEEc
Confidence            9999999999999 99999999999999999987643    22222              45799999999999999988


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCccccccc----ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCD----LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ++.|++||+++ +..+..+..+.........    ......+..+.+++|+|+|++|++|+.||.|+||++.
T Consensus       622 ~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          622 EHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            87899999986 7777666543221100000    0001111224789999999999999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-30  Score=241.08  Aligned_cols=251  Identities=14%  Similarity=0.166  Sum_probs=191.0

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      ..|...|++++|  +|++.+|++|+.||.|++||+.+++..... ..+...|.+++|.              ...+..++
T Consensus       131 ~~~~~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~--------------~~~l~~~~  193 (401)
T 4aez_A          131 TDESTYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN--------------RHVLSSGS  193 (401)
T ss_dssp             CCTTCCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE--------------TTEEEEEE
T ss_pred             cCCCCCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC--------------CCEEEEEc
Confidence            357899999999  789999999999999999999987733222 2455555555442              22444444


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|++...  ...+..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .......+       ..|..
T Consensus       194 ~--dg~i~i~d~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~-------~~~~~  260 (401)
T 4aez_A          194 R--SGAIHHHDVRIA--NHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTK-------TNHNA  260 (401)
T ss_dssp             T--TSEEEEEETTSS--SCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEE-------CCCSS
T ss_pred             C--CCCEEEEecccC--cceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEe-------cCCcc
Confidence            3  568999999843  1556666 7899999999999999999999 99999999998 44444443       67899


Q ss_pred             CeeEEEEecCCCCeEEEEE--cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE--
Q 014644          189 VITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--  264 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--  264 (421)
                      .|.+++|+|++..++++++  .|+.|++||+++++..    ..+..              ...+.+++|+|+++++++  
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEe
Confidence            9999999998867777765  7999999999987643    33332              568999999999999998  


Q ss_pred             ecC-CeEEEEECCCCCcceeE--EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee
Q 014644          265 RDY-MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      |.. +.|++||+.+ +.....  +.+|...+               .+++|+|++++|++++.||.|++|++.++.....
T Consensus       323 g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          323 GFPDNNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             CTTTCEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             ecCCCcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence            434 9999999986 544433  55666554               7999999999999999999999999998744433


Q ss_pred             EEe
Q 014644          342 TVE  344 (421)
Q Consensus       342 ~~~  344 (421)
                      .+.
T Consensus       387 ~~~  389 (401)
T 4aez_A          387 PIP  389 (401)
T ss_dssp             ---
T ss_pred             ccc
Confidence            333

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=243.67  Aligned_cols=250  Identities=14%  Similarity=0.128  Sum_probs=195.8

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLL  203 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l  203 (421)
                      +++..+ .+|.+.|++++|+|++++|+++ .|+.|++||+... .+....       +.+|...|.+++|+|+  + .+|
T Consensus         2 ~~~~~~-~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~-~~l   72 (379)
T 3jrp_A            2 SMVVIA-NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-------LTGHEGPVWRVDWAHPKFG-TIL   72 (379)
T ss_dssp             ---CCE-EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-------ECCCSSCEEEEEECCGGGC-SEE
T ss_pred             CccEEe-cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE-------ecCCCCcEEEEEeCCCCCC-CEE
Confidence            445566 8999999999999999999999 9999999999732 223333       3789999999999977  7 999


Q ss_pred             EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCC-
Q 014644          204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDS-  279 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~-  279 (421)
                      ++++.||.|++||+.+++..  ....+             ..|...|.+++|+|+  +.+|++++. +.|++||++... 
T Consensus        73 ~s~~~dg~v~iwd~~~~~~~--~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           73 ASCSYDGKVLIWKEENGRWS--QIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEETTSCEEEEEEETTEEE--EEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EEeccCCEEEEEEcCCCcee--Eeeee-------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            99999999999999886421  01222             234789999999999  999999876 999999998632 


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcC-------------CCCEEEEeeCCCeEEEEecCCCCC---ceeEE
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-------------DGLHFATGSYSNLLRIFSHGVGSA---GGITV  343 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-------------~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~  343 (421)
                      .....+..|...+               .+++|+|             ++.+|++++.||.|++||++++..   ....+
T Consensus       138 ~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  202 (379)
T 3jrp_A          138 TSPIIIDAHAIGV---------------NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL  202 (379)
T ss_dssp             CCEEEEECCTTCE---------------EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred             eeeEEecCCCCce---------------EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE
Confidence            2334455666544               7999999             699999999999999999987643   34577


Q ss_pred             ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCC-------ccccccccccCeEEEEEccCCCeEEEec-CC
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-------HHELSYNLSSKLLHLAWHPTTNLIACAN-GN  414 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~-------~~~~~~~~~~~v~~~~~spd~~~la~~~-~~  414 (421)
                      .+|..++..++|+|+...    ...|++++.|+. ++|+...       .......+...|++++|+|++++|++++ ++
T Consensus       203 ~~h~~~v~~~~~sp~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          203 EGHSDWVRDVAWSPTVLL----RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             CCCSSCEEEEEECCCCSS----SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             ecccCcEeEEEECCCCCC----CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence            889999999999987210    138999999999 9993221       2223334788999999999999999887 56


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .+++|+
T Consensus       279 ~i~iw~  284 (379)
T 3jrp_A          279 KVTLWK  284 (379)
T ss_dssp             SEEEEE
T ss_pred             cEEEEe
Confidence            699997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.2e-32  Score=245.09  Aligned_cols=255  Identities=9%  Similarity=0.053  Sum_probs=189.2

Q ss_pred             cccccEEEEEEEEcCCCCeEEEE-----------eCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeecc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEH   97 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~-----------s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   97 (421)
                      +|++.|.++.+  +  ++.+++|           +.|+++|+|++....  +.........      .....+..+.+++
T Consensus        71 ~~~~~v~s~~~--~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~  140 (365)
T 4h5i_A           71 DNDDSPTAIDA--S--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFD------ASTNADDYTKLVY  140 (365)
T ss_dssp             TTSCCCCEEEE--E--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSS------CCCCTTCCEEEEE
T ss_pred             CCCCceEEEEe--C--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeecee------ecCCcccCEEEEE
Confidence            56778888877  2  4455554           457789999876543  2222221111      1111234566778


Q ss_pred             CCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee
Q 014644           98 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus        98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~  177 (421)
                      ++|++.+++.++...++.+++|+..+.   +++..+  .|...|.+++|+|||++|+++.++.+++|+..++......  
T Consensus       141 fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~--  213 (365)
T 4h5i_A          141 ISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK--  213 (365)
T ss_dssp             ECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE--
T ss_pred             EcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeee--
Confidence            888888877665555779999999987   777776  4778899999999999999995556667776634433322  


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC----eEEEEECCcccccccchhhhccccccCCCcccccccccceeEE
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  253 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  253 (421)
                          ....|...|.+++|+|++ ..+++++.|+    .+++||+............             +.+|...|+++
T Consensus       214 ----~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~V~~~  275 (365)
T 4h5i_A          214 ----TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ-------------VTNRFKGITSM  275 (365)
T ss_dssp             ----CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE-------------EESSCSCEEEE
T ss_pred             ----ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeee-------------ecCCCCCeEeE
Confidence                236788899999999999 9999999887    6888988765422111122             23457889999


Q ss_pred             EEcCCCCEEEEecC-CeEEEEECCCCCcceeEE-eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          254 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       254 ~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                      +|+|||++||+|+. ++|+|||+++ ++++..+ .+|...+               ++++|+|||++|++||.|++|+||
T Consensus       276 ~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fSpdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          276 DVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTISPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEECTTSCEEEEEETTSEEEEE
T ss_pred             EECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999999999976 9999999987 8887775 6788765               899999999999999999999999


Q ss_pred             ecCCC
Q 014644          332 SHGVG  336 (421)
Q Consensus       332 d~~~~  336 (421)
                      |+...
T Consensus       340 ~ip~~  344 (365)
T 4h5i_A          340 KLPLN  344 (365)
T ss_dssp             ECCTT
T ss_pred             EcCCC
Confidence            99754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.9e-31  Score=265.28  Aligned_cols=275  Identities=14%  Similarity=0.078  Sum_probs=229.2

Q ss_pred             cceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC
Q 014644           91 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  169 (421)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~  169 (421)
                      ..+.++++++++.+++.++.  ++.+++|+..++   +.++.+ .+|...|.+++|+|++++|+++ .|+.|++||+. .
T Consensus        14 ~~v~~i~~sp~~~~la~~~~--~g~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-~   86 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLY--SGRVEIWNYETQ---VEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-T   86 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEET--TSEEEEEETTTT---EEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-T
T ss_pred             CceEEEEECCCCCEEEEEeC--CCEEEEEECCCC---ceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-C
Confidence            45677777788888888765  678999999887   788888 7999999999999999999999 99999999998 4


Q ss_pred             ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccc
Q 014644          170 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  249 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  249 (421)
                      ++....+       .+|...|.+++|+|++ ..|++++.||.|++||+.++...   ...+.             .|...
T Consensus        87 ~~~~~~~-------~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~---~~~~~-------------~~~~~  142 (814)
T 3mkq_A           87 GEKVVDF-------EAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTFE-------------GHEHF  142 (814)
T ss_dssp             CCEEEEE-------ECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEE---EEEEE-------------CCSSC
T ss_pred             CcEEEEE-------ecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceE---EEEEc-------------CCCCc
Confidence            5555444       6799999999999999 89999999999999999875322   12333             34788


Q ss_pred             eeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeecc-CcccccccccCCCcceeeeEEEEcC--CCCEEEEeeC
Q 014644          250 ISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSY  324 (421)
Q Consensus       250 v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~  324 (421)
                      |.+++|+| ++..+++++. +.|++||++. +.....+..+. ..+               ..++|+|  ++.+|++++.
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCC---------------CEEEECCSTTCCEEEEECT
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEecCCCCCE---------------EEEEEEECCCCCEEEEEeC
Confidence            99999999 8889998876 9999999986 66666665543 332               6899999  9999999999


Q ss_pred             CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccccccccCeEEEEE
Q 014644          325 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAW  401 (421)
Q Consensus       325 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~  401 (421)
                      ||.|++||+.++ .....+.+|...+..++|+|+       +..|++++.||. ++|+  .+........+...|.+++|
T Consensus       207 dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~  278 (814)
T 3mkq_A          207 DLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPT-------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT  278 (814)
T ss_dssp             TSEEEEEETTTT-EEEEEEECCSSCEEEEEECSS-------SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEE
T ss_pred             CCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEE
Confidence            999999999887 667888999999999999998       348999999999 9993  34555556677889999999


Q ss_pred             ccCCC--eEEEecCCceEEEe
Q 014644          402 HPTTN--LIACANGNSLFFHY  420 (421)
Q Consensus       402 spd~~--~la~~~~~~~~i~~  420 (421)
                      +|++.  ++++++++++.+|+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          279 HPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             CTTCGGGEEEEEETTEEEEEE
T ss_pred             ccCCCceEEEEEeCCCEEEEE
Confidence            99997  58888899988886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.1e-31  Score=239.34  Aligned_cols=260  Identities=14%  Similarity=0.187  Sum_probs=198.5

Q ss_pred             cccccEEEEEEEEcCC--CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           31 EIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~--~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .|...|++++|++...  +.+|++|+.||.|++||+.+++                                        
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----------------------------------------  106 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ----------------------------------------  106 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC----------------------------------------
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce----------------------------------------
Confidence            3678899999965433  6799999999999999998753                                        


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                          ++..+ .+|...|.+++|+| ++++|+++ .|++|++||++ .++....+    ..+.+|
T Consensus       107 --------------------~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~----~~~~~~  160 (366)
T 3k26_A          107 --------------------CIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIF----GGVEGH  160 (366)
T ss_dssp             --------------------EEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEE----CSTTSC
T ss_pred             --------------------Eeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEe----cccccc
Confidence                                22334 67999999999999 99999999 99999999998 45555443    123679


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccccc-----------CCCcccccccccceeEEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-----------HGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~-----------~~~~~~~~~~~~~v~~~~~  255 (421)
                      ...|.+++|+|++ .+|++++.|+.|++||+++++...............           .........|...|.+++|
T Consensus       161 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          161 RDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             cCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            9999999999999 999999999999999999875431111000000000           0001112347889999999


Q ss_pred             cCCCCEEEEecC-CeEEEEECCCCCc-------------ceeEEeeccCcccccccccCCCcceeeeEEEEcCC--CCEE
Q 014644          256 ANDGQHLLSRDY-MNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHF  319 (421)
Q Consensus       256 s~~~~~l~~~~~-~~i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~l  319 (421)
                      +  ++++++++. +.|++||+++...             .+..+..|...+               .+++|+|+  +++|
T Consensus       240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~~l  302 (366)
T 3k26_A          240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDFWQKML  302 (366)
T ss_dssp             E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECTTSSEE
T ss_pred             c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCCCCcEE
Confidence            9  778888876 9999999976222             255555565544               68899999  9999


Q ss_pred             EEeeCCCeEEEEecCCCCC---ceeEEecC--CCCccceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          320 ATGSYSNLLRIFSHGVGSA---GGITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ++|+.||.|++||+.++..   ....+.+|  ...+..++|+|+  +     .+|++++.|+. ++|+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~-----~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD--S-----SILIAVCDDASIWRWD  363 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT--S-----SEEEEEETTSEEEEEE
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC--C-----CeEEEEeCCCEEEEEE
Confidence            9999999999999998743   23467777  799999999998  3     48999999999 9994

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-32  Score=268.04  Aligned_cols=254  Identities=15%  Similarity=0.102  Sum_probs=191.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeec-CCCCCcccccccccccceeeccCCCC--ceeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPS--FAHGY  106 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~  106 (421)
                      .+|.+.|++++|  +|++++|++|+.||+|+|||+.++........ .|..+|.++            .++++  +.+++
T Consensus         6 ~gH~~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l------------~~s~~~~~~~l~   71 (753)
T 3jro_A            6 NAHNELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV------------DWAHPKFGTILA   71 (753)
T ss_dssp             --CCCCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEE------------EECCTTSCSEEE
T ss_pred             ccCcceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEE------------EecCCCCCCEEE
Confidence            479999999999  78999999999999999999985543333332 344544444            44444  55666


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      .++.  ++.+++|++.... ......+ .+|...|.+++|+|+  ++.+++| .||+|++||++........      .+
T Consensus        72 s~s~--Dg~I~vwd~~~~~-~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~  141 (753)
T 3jro_A           72 SCSY--DGKVLIWKEENGR-WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------II  141 (753)
T ss_dssp             EEET--TSCEEEEEEETTE-EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EE
T ss_pred             EEeC--CCeEEEEECCCCc-ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Ee
Confidence            6655  6789999998761 1256666 789999999999999  9999999 9999999999844222111      23


Q ss_pred             CccCCCeeEEEEec-------------CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644          184 DDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       184 ~~~~~~v~~~~~~p-------------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                      .+|...|.+++|+|             ++ ..|++++.||.|++||++.+.........+             ..|...|
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-------------~~h~~~V  207 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTL-------------EGHSDWV  207 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEE-------------CCCSSCE
T ss_pred             ecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeee-------------cCCCCcE
Confidence            67889999999999             46 899999999999999998764321212222             3458899


Q ss_pred             eEEEEcCC---CCEEEEecC-CeEEEEECCCCCc----ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe
Q 014644          251 SDIKFAND---GQHLLSRDY-MNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  322 (421)
Q Consensus       251 ~~~~~s~~---~~~l~~~~~-~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~  322 (421)
                      .+++|+|+   ++++++++. |.|++||+++...    .......+...+               .+++|+|+|++|++|
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~  272 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEE
Confidence            99999999   899999876 9999999986221    111122233332               789999999999999


Q ss_pred             eCCCeEEEEecCCC
Q 014644          323 SYSNLLRIFSHGVG  336 (421)
Q Consensus       323 s~dg~i~iwd~~~~  336 (421)
                      +.||.|++|++.++
T Consensus       273 s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          273 GGDNKVTLWKENLE  286 (753)
T ss_dssp             CSSSCEECCBCCSS
T ss_pred             cCCCEEEEEecCCC
Confidence            99999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-30  Score=231.28  Aligned_cols=253  Identities=16%  Similarity=0.153  Sum_probs=189.3

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|++++|  +|++++|++++.|+.|++|+............ ...            .+......+....++.++
T Consensus        83 ~~h~~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~l~s~s  147 (340)
T 4aow_A           83 RGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG-HTK------------DVLSVAFSSDNRQIVSGS  147 (340)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSS------------CEEEEEECTTSSCEEEEE
T ss_pred             eCCCCCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecC-CCC------------ceeEEEEeecCccceeec
Confidence            368999999999  79999999999999999999988764333222 222            233344445555666655


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC--CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      .  ++.+++|+....   ........+|...+..++|++++  .+++++ .|++|++||++ ..+....+       .+|
T Consensus       148 ~--d~~~~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~-------~~h  214 (340)
T 4aow_A          148 R--DKTIKLWNTLGV---CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTNH-------IGH  214 (340)
T ss_dssp             T--TSCEEEECTTSC---EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEEE-------CCC
T ss_pred             C--CCeEEEEEeCCC---ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeEe-------cCC
Confidence            4  567899987664   33333337899999999998764  567787 99999999998 55555544       789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ...|.+++|+|++ ++|++++.|+.|++||+++.+..    ..+..              ...+..+.|+|++.+++++.
T Consensus       215 ~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~~  275 (340)
T 4aow_A          215 TGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAAT  275 (340)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeeccC
Confidence            9999999999999 99999999999999999986543    33333              46799999999998888887


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++.|++||++. +..+..+..+.....   ...+..   .|++++|+|+|++|++|+.||.|+|||+.+|
T Consensus       276 d~~i~iwd~~~-~~~~~~~~~~~~~~~---~~~h~~---~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          276 GPSIKIWDLEG-KIIVDELKQEVISTS---SKAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             TTEEEEEETTT-TEEEEEECCC----------CCCC---CEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCEEEEEECCC-CeEEEeccccceeee---ccCCCC---CEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            89999999985 655555443211100   000111   2379999999999999999999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-30  Score=239.71  Aligned_cols=255  Identities=16%  Similarity=0.208  Sum_probs=199.1

Q ss_pred             ccceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          113 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      +..+++|+..++   ++.+.+. .+|...|++++|+|+|++|++| .|++|++||++ .++.+..+       .+|...+
T Consensus       124 d~tV~lWd~~tg---~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~~~~~-------~~h~~~v  192 (420)
T 4gga_A          124 DNSVYLWSASSG---DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNM-------TSHSARV  192 (420)
T ss_dssp             TTEEEEEETTTC---CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-------CCCSSCE
T ss_pred             CCEEEEEECCCC---CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcEEEEE-------eCCCCce
Confidence            568999999987   6555441 4788899999999999999999 99999999998 56666554       7899999


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      .+++++  + ..|++++.|+.+++||.+.....   ...+             .+|...+..+.++|+++++++++. +.
T Consensus       193 ~~~s~~--~-~~l~sgs~d~~i~~~d~~~~~~~---~~~~-------------~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          193 GSLSWN--S-YILSSGSRSGHIHHHDVRVAEHH---VATL-------------SGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             EEEEEE--T-TEEEEEETTSEEEEEETTSSSCE---EEEE-------------ECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeC--C-CEEEEEeCCCceeEeeeccccee---eEEe-------------cccccceeeeeecCCCCeeeeeecccc
Confidence            988776  4 78999999999999998875422   1223             345789999999999999999865 99


Q ss_pred             EEEEECCCCC---cceeEEeeccCcccccccccCCCcceeeeEEEEcCCC-CEEEE--eeCCCeEEEEecCCCCCceeEE
Q 014644          270 LKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFAT--GSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       270 i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      +++|+.....   ..+.....|...+               .+++|+|++ ..+++  |+.|+.|++||+.++ .....+
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V---------------~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~  317 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAV---------------KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAV  317 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCE---------------EEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEE
T ss_pred             ceEEeeccccccceeeeeecccCCce---------------eeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceee
Confidence            9999997522   2344455555543               789999964 45554  457999999999987 555555


Q ss_pred             ecCCCCccceeeecCCcccccccceee--eecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          344 EAGKNENRKPILQAAPRARRSSLSNLT--RGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      ..| ..+..+.|.++  +.     .++  +|+.|+. ++|  ..++.+..+.+|...|++++|+|||++||+|+ ++.|+
T Consensus       318 ~~~-~~v~~~~~~~~--~~-----~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          318 DAH-SQVCSILWSPH--YK-----ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             ECS-SCEEEEEEETT--TT-----EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             ccc-cceeeeeecCC--CC-----eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            544 56778888887  32     444  4557888 999  45567777889999999999999999999998 55699


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      ||+.
T Consensus       390 iWdv  393 (420)
T 4gga_A          390 LWRC  393 (420)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=7.5e-31  Score=238.41  Aligned_cols=251  Identities=14%  Similarity=0.179  Sum_probs=196.4

Q ss_pred             ccccccccccccEEEEEEEEcCC---CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCC
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  100 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~---~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (421)
                      ...+...+|...|++++|  +|+   +.+|++++.|+.|++||+.+++                                
T Consensus        56 ~~~~~~~~~~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------------------  101 (357)
T 3i2n_A           56 LKLLREIEKAKPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPE--------------------------------  101 (357)
T ss_dssp             EEEEEEEEESSCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCS--------------------------------
T ss_pred             ccceeeecccCcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCC--------------------------------
Confidence            334445689999999999  676   6999999999999999998753                                


Q ss_pred             CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEE------eecCCCCEEEEE-cCCcEEEEeCCCCceee
Q 014644          101 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI------SNNSDCETFVSA-DDLRINLWNLEISDQCF  173 (421)
Q Consensus       101 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l------~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~  173 (421)
                                                 .++..+ .+|...|.++      +|+|++++|+++ .|+.|++||++......
T Consensus       102 ---------------------------~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A          102 ---------------------------MPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             ---------------------------SCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred             ---------------------------ccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence                                       123344 6888999999      567899999999 99999999998544345


Q ss_pred             eeeecCCCCCCc-cCCCeeEEE----EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc
Q 014644          174 NIVDMKPSNMDD-LTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  248 (421)
Q Consensus       174 ~~~~~~~~~~~~-~~~~v~~~~----~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  248 (421)
                      ..+..    ..+ +...+.+++    |+|++ .+|++++.|+.|++||+++++..    . .             ..|..
T Consensus       154 ~~~~~----~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~-~-------------~~~~~  210 (357)
T 3i2n_A          154 ANMEP----VQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W-E-------------TNIKN  210 (357)
T ss_dssp             EEECC----CTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E-E-------------EECSS
T ss_pred             eeccc----cCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e-e-------------cCCCC
Confidence            44411    111 234788888    67888 99999999999999999987532    1 1             22367


Q ss_pred             ceeEEEEcC---CCCEEEEecC-CeEEEEECCCCCcceeEEe-----eccCcccccccccCCCcceeeeEEEEcCCCC-E
Q 014644          249 SISDIKFAN---DGQHLLSRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-H  318 (421)
Q Consensus       249 ~v~~~~~s~---~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~  318 (421)
                      .+.+++|+|   ++.++++++. +.|++||+++ ++....+.     +|...+               .+++|+|+++ +
T Consensus       211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~  274 (357)
T 3i2n_A          211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNREL  274 (357)
T ss_dssp             CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEE
T ss_pred             ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcE
Confidence            899999999   8999999876 9999999986 55554444     666544               7999999998 8


Q ss_pred             EEEeeCCCeEEEEecCCCCC------------------ceeEEecCCCCccceeeecCCcccccccceee-eecccCc-c
Q 014644          319 FATGSYSNLLRIFSHGVGSA------------------GGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQA-H  378 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~d~~-~  378 (421)
                      |++++.||.|++||++.+..                  ....+.+|..++..++|+|+  +.     .|+ +++.|+. +
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~-----~l~~s~~~d~~i~  347 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD--KR-----GLCVCSSFDQTVR  347 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS--ST-----TEEEEEETTSEEE
T ss_pred             EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC--CC-----eEEEEecCCCcEE
Confidence            99999999999999986532                  35678899999999999998  33     677 8999999 9


Q ss_pred             cCCC
Q 014644          379 ENSS  382 (421)
Q Consensus       379 iw~~  382 (421)
                      +|+.
T Consensus       348 iw~~  351 (357)
T 3i2n_A          348 VLIV  351 (357)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9943

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.9e-31  Score=248.74  Aligned_cols=291  Identities=8%  Similarity=-0.023  Sum_probs=203.6

Q ss_pred             CCCCcccccccccc-c-------ceeeccCC--------CCceeeeecccccccceeEEeecccce-eeeeeeecCCCCc
Q 014644           77 HFPFVSSENTLLAE-K-------NFMNEHNP--------PSFAHGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDF  139 (421)
Q Consensus        77 ~~~~v~~~~~~~~~-~-------~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~  139 (421)
                      ..+.|.+++|.+.. +       .+++++..        ++...+++++.  ++.+++|++..... ......+ .+|.+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~--D~tI~iWd~~~~~~~~~~~~~l-~~~~~  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKH--SSCIQIFKMNTSTLHCVKVQTI-VHSFG  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------CEEEEEEEEETTTCCEEEEEEE-EECCC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCC--CceEEEEEccCCCCCceEEEEE-EecCC
Confidence            57788999998864 1       34444332        22333444433  56899999876521 1112344 57888


Q ss_pred             ceEEEeecCC------CCEEEEE-cCCcEEEEeCCCCcee---eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC
Q 014644          140 NINSISNNSD------CETFVSA-DDLRINLWNLEISDQC---FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR  209 (421)
Q Consensus       140 ~v~~l~~~~~------~~~l~s~-~d~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  209 (421)
                      .|.+++|+|+      +.+||++ .|++|++||+......   ..........+.+|...|.+++|+|+  ..|++|+.|
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETT
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCC
Confidence            9999999996      5799998 9999999999733211   00000000134779999999999986  479999999


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEE--EEcCCC-CEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI--KFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      |+|++||++++...   ...+             ..|...|.++  +|+|+| .+|++++. ++|+|||+++ ++....+
T Consensus       287 gtV~lWD~~~~~~~---~~~~-------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~  349 (524)
T 2j04_B          287 GFVAEFDLTDPEVP---SFYD-------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTT  349 (524)
T ss_dssp             SEEEEEETTBCSSC---SEEE-------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEE
T ss_pred             CEEEEEECCCCCCc---eEEe-------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccc
Confidence            99999999875321   1223             3458899999  678888 88999876 9999999986 6766667


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      .+|....             .+.+++|+|+++.+++++.|++|++||++++ .....+.+|.+.|.+++|+|+  +    
T Consensus       350 ~~~~~~~-------------~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva~Sp~--g----  409 (524)
T 2j04_B          350 VSRFRGS-------------NLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIGVSRL--H----  409 (524)
T ss_dssp             EEECSCC-------------SCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEECCSS--C----
T ss_pred             ccccccC-------------cccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEEeCCC--C----
Confidence            6665311             0158999999999999999999999999987 556778899999999999998  3    


Q ss_pred             cceeeeecccCc-ccCCCCCccccc-cc-----cccCeEEEEEccCCCeEEE
Q 014644          366 LSNLTRGLYRQA-HENSSSGHHELS-YN-----LSSKLLHLAWHPTTNLIAC  410 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw~~~~~~~~~-~~-----~~~~v~~~~~spd~~~la~  410 (421)
                       ..|++|+.|+. ++|+........ ..     ....|..++|+|++..+..
T Consensus       410 -~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~  460 (524)
T 2j04_B          410 -PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI  460 (524)
T ss_dssp             -CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE
T ss_pred             -CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc
Confidence             38999999999 999544332221 11     1124789999999986643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=9.6e-31  Score=239.16  Aligned_cols=239  Identities=10%  Similarity=0.028  Sum_probs=195.9

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce--eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      ..|.+.|.+++|+|++++|+++ .|+.|++||+. .++  ....+       .+|...|.+++|+|++ .+|++++.|+.
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~~l~~~~~dg~   75 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHEL-------KEHNGQVTGVDWAPDS-NRIVTCGTDRN   75 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEEEE-------ECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCcEEeeeee-------cCCCCcccEEEEeCCC-CEEEEEcCCCe
Confidence            5689999999999999999999 99999999998 443  44433       6799999999999999 99999999999


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc---eeEE-e
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP---VATF-K  286 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~---~~~~-~  286 (421)
                      |++||+.+++..    ....           +..|...+.+++|+|++++|++++. +.|++||++. +..   ...+ .
T Consensus        76 i~vwd~~~~~~~----~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~  139 (372)
T 1k8k_C           76 AYVWTLKGRTWK----PTLV-----------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWWVCKHIKK  139 (372)
T ss_dssp             EEEEEEETTEEE----EEEE-----------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET-TTTEEEEEEECT
T ss_pred             EEEEECCCCeee----eeEE-----------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC-CCcceeeeeeec
Confidence            999999776422    1111           1224778999999999999999876 9999999986 442   2222 2


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC-----------------CCCceeEEecCCCC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-----------------GSAGGITVEAGKNE  349 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~  349 (421)
                      .|...+               .+++|+|++++|++++.||.|++||+..                 .......+.+|...
T Consensus       140 ~~~~~i---------------~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1k8k_C          140 PIRSTV---------------LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  204 (372)
T ss_dssp             TCCSCE---------------EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             ccCCCe---------------eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence            334332               7999999999999999999999999641                 22567778899999


Q ss_pred             ccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +..+.|+|+       ...|++++.|+. ++|  ..++.+.....+...|.+++|+|++++|+++.++.+++|+
T Consensus       205 v~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~  271 (372)
T 1k8k_C          205 VHGVCFSAN-------GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT  271 (372)
T ss_dssp             EEEEEECSS-------SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEE
T ss_pred             EEEEEECCC-------CCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEE
Confidence            999999998       338999999999 999  3455566666788899999999999999999889999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.8e-31  Score=236.91  Aligned_cols=234  Identities=16%  Similarity=0.176  Sum_probs=169.4

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      .++.+|++|+.||+|++||+.+++. ..+.    ...|.++            .+.+.   +.+++.  ++.+++|+...
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~------------~~~~~---~~s~s~--D~~i~~w~~~~  104 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTG------------GEHPA---IISRGP--CNRLLLLYPGN  104 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTT------------CCCCS---EEEECS--TTEEEEEETTT
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceee------------eeCCc---eEEecC--CCeEEEEEccC
Confidence            5678999999999999999998873 3332    2223333            33333   333333  45677776553


Q ss_pred             cc------eeeeeeeecCCCCcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          124 SV------HARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       124 ~~------~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      ..      ..+.++.+..+|.+.|.+++|+|  ++++|+++ .|++|++||++ .++......      ..+...+.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~------~~~~~~i~~~~  177 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVHS------AKSDVEYSSGV  177 (343)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEEC------CCSSCCCCEEE
T ss_pred             ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEEe------cCCCCceEEEE
Confidence            21      12445555457888999999999  99999998 99999999998 455544331      33556799999


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  274 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d  274 (421)
                      |+|++ .+|++|+.||.|++||++++....   ..+..            .|...|.+++|+|+|.+|++++++.|++||
T Consensus       178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd  241 (343)
T 3lrv_A          178 LHKDS-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFD  241 (343)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred             ECCCC-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence            99999 999999999999999999875320   12222            147899999999999999998888999999


Q ss_pred             CCCCCcceeEEee---ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCC
Q 014644          275 IRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  336 (421)
Q Consensus       275 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~  336 (421)
                      +++ .+.+..+..   +...+.             -.+++|+|+|++|++++. |+.|++|++...
T Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          242 LRK-DVGTLAYPTYTIPEFKTG-------------TVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             TTS-STTCBSSCCCBC-----C-------------CEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cCC-CCcceeeccccccccccc-------------ceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            986 555444332   222110             025999999999999998 999999999765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=1.8e-30  Score=242.67  Aligned_cols=253  Identities=14%  Similarity=0.124  Sum_probs=188.0

Q ss_pred             ccccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           28 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ...+|.+.|++|+|  +| ++.+|++|+.||+|++||++++....+..                                
T Consensus       159 ~~~gH~~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------  204 (435)
T 4e54_B          159 KGIGAGGSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGNILRVFAS--------------------------------  204 (435)
T ss_dssp             CCCSSSCCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSCEEEEEEC--------------------------------
T ss_pred             EccCCCCCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCCceeEEec--------------------------------
Confidence            34589999999999  55 68899999999999999998754322211                                


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                                . ..+...+.+++|+|++++|++| .||+|++||++ + +.+.       .+.+
T Consensus       205 --------------------------~-~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~-~~~~-------~~~~  248 (435)
T 4e54_B          205 --------------------------S-DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-G-KELW-------NLRM  248 (435)
T ss_dssp             --------------------------C-SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-S-CBCC-------CSBC
T ss_pred             --------------------------c-CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-c-ceeE-------EEec
Confidence                                      1 2344567889999999999999 99999999997 3 3332       4578


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...|.+++|+|++..+|++++.|+.|++||++..+...    .+..          ...|...|.+++|+|+|++|+++
T Consensus       249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~~----------~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SFLY----------SLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CCSB----------CCBCSSCEEECCBCTTSSEEEEE
T ss_pred             ccceEEeeeecCCCceEEEEecCcceeeEEecccccccc----eEEE----------eeeccccccceeECCCCCeeEEE
Confidence            999999999999986689999999999999998765321    1111          23457899999999999999998


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee------------CCCeEEEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFS  332 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s------------~dg~i~iwd  332 (421)
                      +. +.|++||+++ +.....+..|.......      .   ....+.|+|++.++++++            .++.|++||
T Consensus       315 ~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd  384 (435)
T 4e54_B          315 DQKSEIRVYSASQ-WDCPLGLIPHPHRHFQH------L---TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD  384 (435)
T ss_dssp             ESSSCEEEEESSS-SSSEEEECCCCCCCCSS------S---CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC
T ss_pred             cCCCEEEEEECCC-CccceEEeccccccccc------c---eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE
Confidence            76 9999999986 77666666554321100      0   012456666666555543            346799999


Q ss_pred             cCCCCCceeEEecCCCCccce-eeecCCcccccccceeeeecccCc-ccCCC
Q 014644          333 HGVGSAGGITVEAGKNENRKP-ILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      ..++........+|...+.++ +|+|+  +.     +|++|+ |+. ++|+.
T Consensus       385 ~~~g~~~~~l~~~~~~~v~s~~~fspd--g~-----~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          385 GNSGKMMCQLYDPESSGISSLNEFNPM--GD-----TLASAM-GYHILIWSQ  428 (435)
T ss_dssp             SSSCCEEEEECCSSCCCCCCEEEECTT--SS-----CEEEEC-SSEEEECCC
T ss_pred             CCCCcEEEEEeCCCCCcEEEEEEECCC--CC-----EEEEEc-CCcEEEEEC
Confidence            998844444456788888887 58988  33     788887 556 99944

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=2.5e-30  Score=239.24  Aligned_cols=261  Identities=12%  Similarity=0.058  Sum_probs=205.3

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeee------cCCCCCCcc
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVD------MKPSNMDDL  186 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~------~~~~~~~~~  186 (421)
                      .+++|+.+..   +....+ .+|.+.|++++|+| ++++|+++ .||.|++||+... .....+.      .......+|
T Consensus        24 ~~~v~~~~~~---~~~~~~-~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           24 TRRVLGLELN---KDRDVE-RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHTEEEC---TTEEEC-CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCC
T ss_pred             cceeeccccC---cceeee-eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccC
Confidence            5677777665   666666 88999999999999 99999999 9999999999843 3222211      011122469


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---CCEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLL  263 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~  263 (421)
                      ...|.+++|+|++..+|++++.|+.|++||+.+++..    ..+..              ...+.++.++|.   +.+++
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA----DVFNF--------------EETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSCSSCCEEE
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc----eeccC--------------CCceeeeEeecCCCCCcEEE
Confidence            9999999999944389999999999999999987643    22222              567899999985   44888


Q ss_pred             EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecCCCCCcee
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGI  341 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~~~~~~~~  341 (421)
                      +++. +.|++||+++ ++.+..+..|...+               .+++|+|+++ ++++++.||.|++||+++......
T Consensus       161 ~~~~~~~v~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~  224 (408)
T 4a11_B          161 VGTRGPKVQLCDLKS-GSCSHILQGHRQEI---------------LAVSWSPRYDYILATASADSRVKLWDVRRASGCLI  224 (408)
T ss_dssp             EEESSSSEEEEESSS-SCCCEEECCCCSCE---------------EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred             EEcCCCeEEEEeCCC-cceeeeecCCCCcE---------------EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence            8866 9999999986 78888888887755               7999999988 589999999999999988754444


Q ss_pred             EE---------------ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--C-------------------
Q 014644          342 TV---------------EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G-------------------  384 (421)
Q Consensus       342 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~-------------------  384 (421)
                      .+               .+|...+..++|+|+  +     ..|++++.|+. ++|+..  +                   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  297 (408)
T 4a11_B          225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSD--G-----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF  297 (408)
T ss_dssp             ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT--S-----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC
T ss_pred             cccccccccceeeccccccccCceeEEEEcCC--C-----CEEEEecCCCeEEEEECCCCccceecccccccccccccee
Confidence            44               678899999999998  3     38999999999 999321  1                   


Q ss_pred             ----------------------------ccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          385 ----------------------------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       385 ----------------------------~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                                                  .+....+|...|++++|+|++++|++++ ++.+++|+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             EECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             EEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence                                        1122346888999999999999999998 566999973

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.3e-29  Score=237.85  Aligned_cols=233  Identities=10%  Similarity=0.044  Sum_probs=175.6

Q ss_pred             CCCCcceEEEeecCCCCEE-EEE-cCCcEEEEeCCC-CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          135 HAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      .+|.+.|.+++|+|++++| +++ .|++|++||+.. .+.....+.     ...|...|.+++|+|++ .+|++++.++.
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~~-~~l~~~~~~g~  172 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-----RFCFSKRPNAISIAEDD-TTVIIADKFGD  172 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-----EEECSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-----cccCCCCceEEEEcCCC-CEEEEEeCCCc
Confidence            5788899999999999996 788 999999999972 234444431     12567889999999999 99999999999


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC---CCEEEEecC-CeEEEEECCCCCcceeE-Ee
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTPVAT-FK  286 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-~~i~i~d~~~~~~~~~~-~~  286 (421)
                      |++|++.++.........             +.+|...|.+++|+|+   +++|++++. +.|++||+++ ++.+.. +.
T Consensus       173 v~~~~~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~  238 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEP-------------ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF  238 (450)
T ss_dssp             EEEEETTSCCCSSCCCCC-------------SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred             EEEEecCCccccccccee-------------eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence            999999876532101112             3345889999999999   999999876 9999999986 666666 44


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec---------------------
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---------------------  345 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~---------------------  345 (421)
                      +|...+               .+++|+ ++++|++++.|+.|++||+.++ .....+..                     
T Consensus       239 ~h~~~v---------------~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          239 GHKHFV---------------SSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             CCSSCE---------------EEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             CCCCce---------------EEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhccccccccccc
Confidence            676654               799999 9999999999999999999987 44455542                     


Q ss_pred             ----CCCCccceeeecCCcccccccceeeeec-ccCc-ccCCC--C-C----ccccccccccCeEEEEEccCCCeEEEec
Q 014644          346 ----GKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HENSS--S-G----HHELSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       346 ----~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~d~~-~iw~~--~-~----~~~~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                          ....+..+.+.|+  +     .+|++++ .++. ++|+.  . .    .......+ ..|.+++|+|++.++++++
T Consensus       302 ~~~~~~~~v~~i~~~~~--~-----~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKN--L-----PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ---CBCCCEEEEEECSS--S-----SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEEEEEeCC--C-----CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence                2345777888877  3     3777777 7788 99954  2 1    12222334 7899999999654444444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.6e-30  Score=236.84  Aligned_cols=247  Identities=14%  Similarity=0.135  Sum_probs=189.6

Q ss_pred             ccccccEEEEEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...|++++|  +| ++++|++|+.||+|+|||+.++......                                   
T Consensus        78 ~~h~~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-----------------------------------  120 (402)
T 2aq5_A           78 CGHTAPVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-----------------------------------  120 (402)
T ss_dssp             CCCSSCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB-----------------------------------
T ss_pred             ecCCCCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc-----------------------------------
Confidence            479999999999  67 8999999999999999999876411000                                   


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                        .+++..+ .+|...|.+++|+|++ .+|+++ .|++|++||++ .++....+     ....|
T Consensus       121 ------------------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~-----~~~~~  175 (402)
T 2aq5_A          121 ------------------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTL-----GPDVH  175 (402)
T ss_dssp             ------------------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEE-----CTTTC
T ss_pred             ------------------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEE-----ecCCC
Confidence                              0334455 7899999999999998 699998 99999999998 45555433     11568


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhh-ccccccCCCccccccccc-ceeEEEEcCCCCEEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLS  264 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~  264 (421)
                      ...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+ ..             |.. .+..+.|+|++++|++
T Consensus       176 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~-------------~~~~~~~~~~~~~~~~~l~~  237 (402)
T 2aq5_A          176 PDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKDRP-------------HEGTRPVHAVFVSEGKILTT  237 (402)
T ss_dssp             CSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEECS-------------SCSSSCCEEEECSTTEEEEE
T ss_pred             CCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeeccC-------------CCCCcceEEEEcCCCcEEEE
Confidence            8999999999999 99999999999999999987643    222 23             233 3899999999999999


Q ss_pred             e---cC-CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCC
Q 014644          265 R---DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       265 ~---~~-~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~  338 (421)
                      +   +. +.|++||+++...++.... .+...+               .+++|+|++++|+ +|+.||.|++||+.++..
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             eccCCCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            8   44 9999999986344344433 223222               7899999999986 556799999999998754


Q ss_pred             ceeEEec--CCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          339 GGITVEA--GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       339 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ....+..  |..++..++|+|+  +.     .++++  ++. ++|
T Consensus       303 ~~~~l~~~~~~~~v~~~~~sp~--~~-----~~~s~--~~~~~~~  338 (402)
T 2aq5_A          303 FLHYLSMFSSKESQRGMGYMPK--RG-----LEVNK--CEIARFY  338 (402)
T ss_dssp             CEEEEEEECCSSCCSEEEECCG--GG-----SCGGG--TEEEEEE
T ss_pred             ceEeecccccCCcccceEEecc--cc-----cceec--ceeEEEE
Confidence            3555554  4589999999998  33     55543  335 788

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3.9e-30  Score=237.38  Aligned_cols=258  Identities=14%  Similarity=0.159  Sum_probs=189.9

Q ss_pred             ccccccEEEEEEEEcCC----C---CeEEEEeCCCcEEEeecCCce------eEEeeecCC---CCCcccccccccccce
Q 014644           30 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQK------VKKIKEMDH---FPFVSSENTLLAEKNF   93 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~----~---~~l~t~s~d~~v~lwd~~~~~------~~~~~~~~~---~~~v~~~~~~~~~~~~   93 (421)
                      .+|...|++++|+  ++    +   .+|++++.|+.|++||+.+++      ...+.....   ...            +
T Consensus        59 ~~h~~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------v  124 (397)
T 1sq9_A           59 FVHKSGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS------------F  124 (397)
T ss_dssp             ECCTTCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSC------------E
T ss_pred             ecCCCcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCc------------E
Confidence            3789999999994  66    8   899999999999999998766      222221110   244            4


Q ss_pred             eeccCC----CCcee-eeecccccccceeEEeecc------cceeeeee-----eec------CCCCcceEEEeecCCCC
Q 014644           94 MNEHNP----PSFAH-GYHLEWTENMATKIANVGN------SVHARCQK-----VYP------HAHDFNINSISNNSDCE  151 (421)
Q Consensus        94 ~~~~~~----~~~~~-~~~g~~~~~~~~~~~~~~~------~~~~~~~~-----~~~------~~h~~~v~~l~~~~~~~  151 (421)
                      .++.+.    ++... ++.++.  ++.+++|++..      .   +++.     .+.      ..|...|.+++|+|++ 
T Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  198 (397)
T 1sq9_A          125 WALKWGASNDRLLSHRLVATDV--KGTTYIWKFHPFADESNS---LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  198 (397)
T ss_dssp             EEEEEECCC----CEEEEEEET--TSCEEEEEEESSSSHHHH---TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             EEEEEeeccCCCCceEEEEEeC--CCcEEEEeCCcccccccc---ceeeccCcceeeeeeccccCCCCCceEEEECCCc-
Confidence            444444    45555 555554  56899999987      4   3333     441      3488899999999999 


Q ss_pred             EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc---c---CCCeeEEEEecCCCCeEEEEEcC---CeEEEEECCccc
Q 014644          152 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSA  221 (421)
Q Consensus       152 ~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~s~~~d---~~v~iwd~~~~~  221 (421)
                      +|+++ .|+.|++||++ ..+.+..+       ..   |   ...|.+++|+|++ .+|++++.|   +.|++||+++++
T Consensus       199 ~l~~~~~dg~i~i~d~~-~~~~~~~~-------~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          199 LIATGFNNGTVQISELS-TLRPLYNF-------ESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE  269 (397)
T ss_dssp             EEEEECTTSEEEEEETT-TTEEEEEE-------ECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC
T ss_pred             eEEEEeCCCcEEEEECC-CCceeEEE-------eccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc
Confidence            99999 99999999998 45555554       44   7   8999999999999 999999999   999999999875


Q ss_pred             ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe------ec------
Q 014644          222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK------IH------  288 (421)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~------~~------  288 (421)
                      ..    ..+...............|...|.+++|+|++++|++++. +.|++||+++ ++.+..+.      .|      
T Consensus       270 ~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1sq9_A          270 RI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILA  344 (397)
T ss_dssp             EE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCC
T ss_pred             cc----ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhc
Confidence            43    2222200000000000115789999999999999999876 9999999986 88888888      55      


Q ss_pred             ---------cCcccccccccCCCcceeeeEEEEcCCC----------CEEEEeeCCCeEEEEecCCC
Q 014644          289 ---------EHLRPKLCDLYNNDSIFDKFECSVSGDG----------LHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       289 ---------~~~~~~~~~~~~~~~~~~~~~~~~sp~~----------~~l~~~s~dg~i~iwd~~~~  336 (421)
                               ...               +.+++|+|++          ++|++++.||.|++|++.++
T Consensus       345 g~~~~~~~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          345 VDEHGDSLAEPG---------------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             BCTTSCBCSSCC---------------EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccccCCc---------------eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                     332               3799999998          79999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=228.53  Aligned_cols=247  Identities=11%  Similarity=0.090  Sum_probs=196.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|.+++|  ++++++|++++.|++|++||+.+++......  +...+.            ++.++++..++..+..
T Consensus        72 ~h~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~------------~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B           72 GHTGTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVK------------RVEFSPCGNYFLAILD  135 (369)
T ss_dssp             CCSSCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEE------------EEEECTTSSEEEEEEC
T ss_pred             hcCCcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeE------------EEEEccCCCEEEEecC
Confidence            58999999999  7899999999999999999999887433322  445444            4444555555555443


Q ss_pred             c---cccceeEEeeccccee--------eeeeeecCCCCc--ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeee
Q 014644          111 T---ENMATKIANVGNSVHA--------RCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  176 (421)
Q Consensus       111 ~---~~~~~~~~~~~~~~~~--------~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~  176 (421)
                      +   ..+.+.+|+.......        .....+ ..|..  .+.+++|+|++++|+++ .|+.|++||++........+
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  214 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI  214 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE
T ss_pred             CccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE
Confidence            2   2257889988764211        133333 45655  89999999999999999 99999999999545666554


Q ss_pred             ecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          177 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                             ..|...|.+++|+|++ .+|++++.|+.|++||+++++..    ..+..              ...+..++|+
T Consensus       215 -------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~~  268 (369)
T 3zwl_B          215 -------DLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYET--------------DCPLNTAVIT  268 (369)
T ss_dssp             -------ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC--------------SSCEEEEEEC
T ss_pred             -------ecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCcee----eeecC--------------CCCceeEEec
Confidence                   6788999999999999 99999999999999999987643    22322              5789999999


Q ss_pred             CCCCEEEEecC-C--------------eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEE
Q 014644          257 NDGQHLLSRDY-M--------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT  321 (421)
Q Consensus       257 ~~~~~l~~~~~-~--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~  321 (421)
                      |+++++++++. +              .+++||+.+ ++.+..+.+|...+               .+++|+|++++|++
T Consensus       269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTSYAS  332 (369)
T ss_dssp             SSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSEEEE
T ss_pred             CCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCEEEE
Confidence            99999998865 5              899999986 88888888888765               79999999999999


Q ss_pred             eeCCCeEEEEecCCC
Q 014644          322 GSYSNLLRIFSHGVG  336 (421)
Q Consensus       322 ~s~dg~i~iwd~~~~  336 (421)
                      ++.||.|++|+++.+
T Consensus       333 ~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          333 GGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EETTSEEEEEEECHH
T ss_pred             EcCCCeEEEEECccc
Confidence            999999999999865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=8.9e-31  Score=241.17  Aligned_cols=260  Identities=12%  Similarity=0.062  Sum_probs=172.8

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccc
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  124 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  124 (421)
                      +++.+|++++.|++|+|||+++++....                                                    
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------------------  126 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------------------  126 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEE----------------------------------------------------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcccee----------------------------------------------------
Confidence            4456899999999999999887653221                                                    


Q ss_pred             ceeeeeeeecCCCCcceEEEeecC--------CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE
Q 014644          125 VHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  195 (421)
Q Consensus       125 ~~~~~~~~~~~~h~~~v~~l~~~~--------~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  195 (421)
                         .++..+ .+|.+.|++++|+|        |+++||++ .|++|+|||+.........        .+|..++.+++|
T Consensus       127 ---~~~~~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~--------~~~~~~v~~v~~  194 (393)
T 4gq1_A          127 ---HVLGGK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG--------YPLSSPGISVQF  194 (393)
T ss_dssp             ---EEECTT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE--------EECSSCEEEEEE
T ss_pred             ---eeeccc-CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee--------cCCCCCcEEEEE
Confidence               222334 89999999999998        88999999 9999999999844444433        568899999999


Q ss_pred             ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccc--------ccCCCcccccccccceeEEEEc-CCCCEEEEec
Q 014644          196 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--------ESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD  266 (421)
Q Consensus       196 ~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~--------~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  266 (421)
                      +|++..+|++++.|++|++||+++++...........+.        ..........+|...+.++.|+ ||++.|++++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s  274 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC  274 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence            999756899999999999999998754321111100000        0001111235677889999987 7999999987


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCccccccc------ccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCCC
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD------LYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      . +++++||+.. ++....+..+...+.....      .......   ....|+|  ++.++++|+.||.|++||+.++ 
T Consensus       275 ~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-  349 (393)
T 4gq1_A          275 KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEK-  349 (393)
T ss_dssp             TTSEEEEEEC--------------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCT-
T ss_pred             CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCC-
Confidence            6 9999999986 5555555444332211100      0001111   2344554  4557788999999999999987 


Q ss_pred             CceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC
Q 014644          338 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN  380 (421)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw  380 (421)
                      .....+.+|..+|.+++|+|+  |+     +||+++.+|..+|
T Consensus       350 ~~~~~~~~~~~~V~svafspd--G~-----~LA~as~~Gv~lv  385 (393)
T 4gq1_A          350 DSNSIPIQLGMPIVDFCWHQD--GS-----HLAIATEGSVLLT  385 (393)
T ss_dssp             TCCEEEEECSSCEEEEEECTT--SS-----EEEEEESSEEEEE
T ss_pred             cEEEEecCCCCcEEEEEEcCC--CC-----EEEEEeCCCeEEE
Confidence            556677888899999999999  44     8999998887444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=9.7e-30  Score=233.70  Aligned_cols=244  Identities=15%  Similarity=0.101  Sum_probs=188.6

Q ss_pred             eeeeeecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec-CCCCeEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLA  204 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~  204 (421)
                      +..+.+ .+|...|++++|+|++ ++|++| .|+.|++||+. ..+....+     ...+|...|.+++|+| ++ .+|+
T Consensus        64 ~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~-----~~~~h~~~v~~~~~~~~~~-~~l~  135 (383)
T 3ei3_B           64 KLHRTA-SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFI-----QGMGPGDAITGMKFNQFNT-NQLF  135 (383)
T ss_dssp             EEEEEE-CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEE-----CCCSTTCBEEEEEEETTEE-EEEE
T ss_pred             ceEEec-cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-Ccccceee-----ecCCcCCceeEEEeCCCCC-CEEE
Confidence            556667 8999999999999999 999999 99999999998 44444433     2357999999999999 56 8999


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCccee
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~  283 (421)
                      +++.|+.|++||++....     ..+..|          ..+...+.+++|+|++++|++++. +.|++||++  ++.+.
T Consensus       136 s~~~d~~i~iwd~~~~~~-----~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~  198 (383)
T 3ei3_B          136 VSSIRGATTLRDFSGSVI-----QVFAKT----------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIF  198 (383)
T ss_dssp             EEETTTEEEEEETTSCEE-----EEEECC----------CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEE
T ss_pred             EEeCCCEEEEEECCCCce-----EEEecc----------CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEE
Confidence            999999999999986332     222221          223578999999999999999876 999999994  77888


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeEEEEecCCCC---CceeEEecCCCCccceeeec-C
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQA-A  358 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~-~  358 (421)
                      .+..|...+               .+++|+|+++ +|++++.|+.|++||+++..   .....+ +|...+..+.|+| +
T Consensus       199 ~~~~h~~~v---------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~  262 (383)
T 3ei3_B          199 KEKLHKAKV---------------THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD  262 (383)
T ss_dssp             EEECSSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT
T ss_pred             EeccCCCcE---------------EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC
Confidence            888888765               8999999998 99999999999999999742   223333 7999999999999 6


Q ss_pred             CcccccccceeeeecccCc-ccCCC--CCcccccccc-------cc----------CeEEEEEccCCCeEEEec-CCceE
Q 014644          359 PRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNL-------SS----------KLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       359 ~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~-------~~----------~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                             ...|++++.|+. ++|+.  +.......++       ..          .+..++|+|++++  +++ ++.++
T Consensus       263 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~  333 (383)
T 3ei3_B          263 -------STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID  333 (383)
T ss_dssp             -------SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred             -------CCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence                   338999999999 99932  2222222222       22          3334556666655  334 67799


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      +|+.
T Consensus       334 iwd~  337 (383)
T 3ei3_B          334 IYDA  337 (383)
T ss_dssp             EEET
T ss_pred             EEec
Confidence            9974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.2e-28  Score=223.79  Aligned_cols=249  Identities=12%  Similarity=0.078  Sum_probs=168.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee-eec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-YHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~g  108 (421)
                      ..|.+.|++++|  +|++++|++|+.|+ ++||++++.+........  + +..++            ..+....+ ..+
T Consensus        16 ~~h~~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~-~~~~~------------~~~~~~~~~~~~   77 (355)
T 3vu4_A           16 NHVSNPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--H-LSKVR------------MLHRTNYVAFVT   77 (355)
T ss_dssp             ---CCCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--C-CCEEE------------ECTTSSEEEEEC
T ss_pred             ccCCCceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--C-eEEEE------------EcCCCCEEEEEE
Confidence            468999999999  79999999888775 789999877633322211  1 21111            11222222 222


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      +.  +..+++||..++   +++..+  .|...|.+++|+++  .++.+.|+.|++||+....+.+..+       ..   
T Consensus        78 ~~--d~~v~iWd~~~~---~~~~~~--~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~-------~~---  138 (355)
T 3vu4_A           78 GV--KEVVHIWDDVKK---QDVSRI--KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDD-------IR---  138 (355)
T ss_dssp             SS--TTEEEEEETTTT---EEEEEE--ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCC-------EE---
T ss_pred             CC--ccEEEEEECCCC---cEEEEE--ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEe-------cc---
Confidence            22  348999999887   777777  36779999999875  4555667899999998442444332       22   


Q ss_pred             CeeEEEEecCCCCeEEE--EEcCCeEEEEECCcccccccchhhhccccccCCC-cccccccccceeEEEEcCCCCEEEEe
Q 014644          189 VITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      +...+++++   ..+++  ++.||.|++||++++............  ..... ...+.+|...|.+++|+|+|++|+++
T Consensus       139 ~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          139 FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             EEEEEEEET---TEEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence            445566777   34554  579999999999876421000000000  00001 23356679999999999999999999


Q ss_pred             cC-Ce-EEEEECCCCCcceeEEe-e-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          266 DY-MN-LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       266 ~~-~~-i~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +. ++ |++||+++ ++.+..+. + |...+               .+++|+|++++|++++.|++|++||+...
T Consensus       214 s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          214 SQDGTIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             ETTCSEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             eCCCCEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            76 98 99999987 88888887 4 66654               79999999999999999999999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=8.3e-30  Score=225.63  Aligned_cols=213  Identities=14%  Similarity=0.182  Sum_probs=162.3

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|++.|++++|.+..++++|++|+.|++|+|||+.+++.                                        
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~----------------------------------------   89 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW----------------------------------------   89 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB----------------------------------------
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce----------------------------------------
Confidence            3799999999995323489999999999999999976531                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCc
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDD  185 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~  185 (421)
                                        .++..+ .+|...|.+++|+|+  +.+|+++ .|++|++||++..... ..       .+.+
T Consensus        90 ------------------~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------~~~~  143 (297)
T 2pm7_B           90 ------------------SQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------IIDA  143 (297)
T ss_dssp             ------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------EEEC
T ss_pred             ------------------EEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------eeec
Confidence                              122233 679999999999997  8899999 9999999999843222 12       2367


Q ss_pred             cCCCeeEEEEecCC------------CCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEE
Q 014644          186 LTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  253 (421)
Q Consensus       186 ~~~~v~~~~~~p~~------------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  253 (421)
                      |...|.+++|+|++            .++|++++.|++|++||++.+.........             +.+|...|.++
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-------------l~~H~~~V~~v  210 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDV  210 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-------------ecCCCCceEEE
Confidence            99999999999972            168999999999999999875421111122             34458899999


Q ss_pred             EEcCCC---CEEEEecC-CeEEEEECCCCCcc-e-eEE--eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644          254 KFANDG---QHLLSRDY-MNLKLWDIRMDSTP-V-ATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  325 (421)
Q Consensus       254 ~~s~~~---~~l~~~~~-~~i~i~d~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d  325 (421)
                      +|+|++   .+|++++. ++|++||++..... . ..+  ..+...               +.+++|+|++++|++++.|
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEETT
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEEEEcCC
Confidence            999985   78998875 99999999752211 1 122  123322               2799999999999999999


Q ss_pred             CeEEEEecCCC
Q 014644          326 NLLRIFSHGVG  336 (421)
Q Consensus       326 g~i~iwd~~~~  336 (421)
                      |.|++|+....
T Consensus       276 ~~v~lw~~~~~  286 (297)
T 2pm7_B          276 NKVTLWKENLE  286 (297)
T ss_dssp             SCEEEEEECTT
T ss_pred             CcEEEEEECCC
Confidence            99999998743

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.3e-30  Score=238.03  Aligned_cols=278  Identities=14%  Similarity=0.150  Sum_probs=200.4

Q ss_pred             cccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC---CceeEEeeecCCCCCcccccccc--cccceeecc--CC
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLL--AEKNFMNEH--NP   99 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~---~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~--~~   99 (421)
                      ...++|...|++++|  ++++.+|++++.||+|++||++   +++.......+   .+..+.+.+  ....+.++.  .+
T Consensus       105 ~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          105 SLTYDCSSTVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             SEEEECSSCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             eeeccCCCCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcccccCceEEEEEEc
Confidence            444579999999999  6899999999999999999995   44322221111   344455554  344555554  45


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCC--CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeee
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  176 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~  176 (421)
                      ++...++.++.  ++.+++|++.+.   +++..+ .+  |...|++++|+|++++|++| .|++|++||++ .++++..+
T Consensus       180 ~~~~~l~~~~~--d~~i~iwd~~~~---~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~  252 (437)
T 3gre_A          180 EEKSLLVALTN--LSRVIIFDIRTL---ERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSW  252 (437)
T ss_dssp             SSCEEEEEEET--TSEEEEEETTTC---CEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEE
T ss_pred             CCCCEEEEEeC--CCeEEEEeCCCC---eeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEE
Confidence            66777777766  678999999887   777777 66  89999999999999999999 99999999999 56666554


Q ss_pred             ecCCCCCCccCCCeeEEEEec----CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc-----------c
Q 014644          177 DMKPSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------S  241 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----------~  241 (421)
                      .      ..|...|.+++|+|    ++ .+|++++.|+.|++||+++++..    ..+..|.......           .
T Consensus       253 ~------~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~  321 (437)
T 3gre_A          253 S------FGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ----YAFINSDEQPSMEHFLPIEKGLEEL  321 (437)
T ss_dssp             B------CTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE----EEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred             e------cCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE----EEEEcCCCCCccceecccccccccc
Confidence            1      25777899997665    56 79999999999999999987643    2233221111100           0


Q ss_pred             cccc--cccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc----------------------
Q 014644          242 FFTE--IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC----------------------  296 (421)
Q Consensus       242 ~~~~--~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----------------------  296 (421)
                      .+.+  |...|.+++|+ ++++|++++. +.|++||+++ ++....+.+|........                      
T Consensus       322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (437)
T 3gre_A          322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS  399 (437)
T ss_dssp             CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------
T ss_pred             eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccc
Confidence            1233  78899999999 7889999875 9999999986 777777766432111000                      


Q ss_pred             ---cccCCCcceeeeEEEEcCC--CCEEEEeeCCCeEEEEe
Q 014644          297 ---DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFS  332 (421)
Q Consensus       297 ---~~~~~~~~~~~~~~~~sp~--~~~l~~~s~dg~i~iwd  332 (421)
                         ...+.+.+   .+++|+++  +.+|++|+.||.|+||+
T Consensus       400 ~~~~~~h~~~I---~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          400 VDDSLYHHDII---NSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------CCCE---EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cCcccccccce---eeEeeeccCCceEEEEEcCCceEEEeC
Confidence               00123333   78999987  78999999999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=8.6e-29  Score=232.03  Aligned_cols=300  Identities=22%  Similarity=0.299  Sum_probs=202.0

Q ss_pred             CCCceeeeccccccCCCccccccccccccEEEEEEEEcCCC--CeEEEEeCCCcEEEeecCCceeEEee-ecCC-CC---
Q 014644            7 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIK-EMDH-FP---   79 (421)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~~~~~~--~~l~t~s~d~~v~lwd~~~~~~~~~~-~~~~-~~---   79 (421)
                      ..++|.....+++|.++|++++++.+.+.|++++|  +|++  .+|++++.|++|++||+.++...... .... .+   
T Consensus        67 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~  144 (447)
T 3dw8_B           67 SRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR  144 (447)
T ss_dssp             CCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-------
T ss_pred             cccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccccc
Confidence            45788889999999999999999999999999999  5666  79999999999999999875421100 0000 00   


Q ss_pred             ---Cccccc-------------------ccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeee------
Q 014644           80 ---FVSSEN-------------------TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK------  131 (421)
Q Consensus        80 ---~v~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------  131 (421)
                         .+..+.                   .......+.++.+++++.+++.+ .  ++.+++|++....  ++++      
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~--~~~~~~~~~~  219 (447)
T 3dw8_B          145 DPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D--DLRINLWHLEITD--RSFNIVDIKP  219 (447)
T ss_dssp             -CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C--SSEEEEEETTEEE--EEEEEEECCC
T ss_pred             CcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C--CCeEEEEECCCCC--ceeeeeeccc
Confidence               000000                   01123456666777777777776 2  7889999998431  3333      


Q ss_pred             -eecCCCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCcee---eeeeecCCCCCCccCC------------CeeEE
Q 014644          132 -VYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC---FNIVDMKPSNMDDLTE------------VITSA  193 (421)
Q Consensus       132 -~~~~~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~------------~v~~~  193 (421)
                       .+ .+|...|.+++|+|++ ++|+++ .|++|++||++.....   ...+       ..|..            .|.++
T Consensus       220 ~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~  291 (447)
T 3dw8_B          220 ANM-EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF-------EEPEDPSNRSFFSEIISSISDV  291 (447)
T ss_dssp             SSG-GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE-------CCC-----CCHHHHHTTCEEEE
T ss_pred             ccc-cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe-------ccCCCccccccccccCceEEEE
Confidence             23 6899999999999998 999999 9999999999843321   3333       44544            89999


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCc-ccccccchhhhccccccCCCc-ccc-cccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSK-SFF-TEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~-~~~-~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      +|+|++ .+|++++. +.|++||++. ++..    ..+..|....... ..+ ......+..++|+|++++|++++. +.
T Consensus       292 ~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          292 KFSHSG-RYMMTRDY-LSVKVWDLNMENRPV----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             EECTTS-SEEEEEES-SEEEEEETTCCSSCS----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             EECCCC-CEEEEeeC-CeEEEEeCCCCcccc----ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence            999999 99999998 9999999987 4432    3444431000000 000 000012345999999999999876 99


Q ss_pred             EEEEECCCCCcceeEEeeccCccccc---------------------ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKL---------------------CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  328 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i  328 (421)
                      |++||+.+ ++.+ .+..+.......                     ..+....   .+..++|+|++.+||+++.++ +
T Consensus       366 v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~p~~~~la~~~~~~-~  439 (447)
T 3dw8_B          366 FRMFDRNT-KRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK---KILHTAWHPKENIIAVATTNN-L  439 (447)
T ss_dssp             EEEEETTT-CCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS---CCCEEEECSSSSEEEEECSSC-E
T ss_pred             EEEEEcCC-Ccce-eeeecccccccccccCCccccccCCcccccccccccccCC---ceeEEEECCCCCEEEEEecce-e
Confidence            99999986 5544 344433211100                     0001112   236899999999999998765 7


Q ss_pred             EEEec
Q 014644          329 RIFSH  333 (421)
Q Consensus       329 ~iwd~  333 (421)
                      ++|.-
T Consensus       440 ~~~~~  444 (447)
T 3dw8_B          440 YIFQD  444 (447)
T ss_dssp             EEEEC
T ss_pred             eeecc
Confidence            77764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=252.00  Aligned_cols=245  Identities=15%  Similarity=0.135  Sum_probs=194.2

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC-ceeeeeeecCCCCCCccCCCeeEEEEecC--CCCeEEEEEcCC
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRG  210 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~d~  210 (421)
                      .+|.+.|++++|+|++++|++| .||+|++||+... ......       +.+|...|.+++|+|+  + .+|++++.||
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-------l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg   77 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-------LTGHEGPVWRVDWAHPKFG-TILASCSYDG   77 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-------ECCCSSCEEEEEECCTTSC-SEEEEEETTS
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-------ccCCcCceEEEEecCCCCC-CEEEEEeCCC
Confidence            8999999999999999999999 9999999999732 223333       3789999999999988  7 9999999999


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC--CCEEEEecC-CeEEEEECCCCC-cceeEEe
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDS-TPVATFK  286 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~-~~i~i~d~~~~~-~~~~~~~  286 (421)
                      .|++||+.+++..  ....+             ..|...|.+++|+|+  ++++++++. |.|++||++... .....+.
T Consensus        78 ~I~vwd~~~~~~~--~~~~~-------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           78 KVLIWKEENGRWS--QIAVH-------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             CEEEEEEETTEEE--EEEEE-------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             eEEEEECCCCccc--ccccc-------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence            9999999876411  11222             334789999999999  999999876 999999998631 2344455


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcC-------------CCCEEEEeeCCCeEEEEecCCCC---CceeEEecCCCCc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSG-------------DGLHFATGSYSNLLRIFSHGVGS---AGGITVEAGKNEN  350 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-------------~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~  350 (421)
                      +|...+               .+++|+|             ++.++++|+.||.|++||++++.   .....+.+|..++
T Consensus       143 ~~~~~v---------------~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V  207 (753)
T 3jro_A          143 AHAIGV---------------NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (753)
T ss_dssp             CCSSCE---------------EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             cCCCce---------------EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence            666544               7999999             58999999999999999998764   2356778999999


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCCCCC-------ccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~-------~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      .+++|+|+...    ...|++|+.|+. ++|+...       .......+...|++++|+|++++|++++ ++.+++|+.
T Consensus       208 ~~l~~sp~~~~----~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          208 RDVAWSPTVLL----RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             EEEEECCCCSS----SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             EEEEeccCCCC----CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            99999987210    138999999999 9993221       3334446788999999999999999988 566999973

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.3e-28  Score=226.18  Aligned_cols=264  Identities=14%  Similarity=0.175  Sum_probs=207.6

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|.++.|  +  ++++++|+.||+|++||+.+++..... ..+...|.++++.              ...+..++.
T Consensus       157 ~h~~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--------------~~~l~s~s~  217 (445)
T 2ovr_B          157 GHTGGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--------------EKRVVSGSR  217 (445)
T ss_dssp             CCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--------------TTEEEEEET
T ss_pred             CCCCCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--------------CCEEEEEeC
Confidence            68999999999  3  579999999999999999988733222 2345555544442              223444443


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                        ++.+++|+..+.   +++..+ .+|...|.+++|  ++++|+++ .|+.|++||++ .++.+..+       .+|...
T Consensus       218 --dg~i~~wd~~~~---~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-------~~~~~~  281 (445)
T 2ovr_B          218 --DATLRVWDIETG---QCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHTL-------QGHTNR  281 (445)
T ss_dssp             --TSEEEEEESSSC---CEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEEE-------CCCSSC
T ss_pred             --CCEEEEEECCCC---cEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEEe-------cCCCCc
Confidence              568999999887   778888 899999999999  68889998 99999999998 55555544       678999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |.+++|  ++ ..+++++.|+.|++||+++++..    ..+..             |...+.++.++  ++++++++. +
T Consensus       282 v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~~~~dg  339 (445)
T 2ovr_B          282 VYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLTG-------------HQSLTSGMELK--DNILVSGNADS  339 (445)
T ss_dssp             EEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CCSCEEEEEEE--TTEEEEEETTS
T ss_pred             eEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEcC-------------CcccEEEEEEe--CCEEEEEeCCC
Confidence            999999  66 89999999999999999987643    33333             36677777774  678888865 9


Q ss_pred             eEEEEECCCCCcceeEEee---ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE--
Q 014644          269 NLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV--  343 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--  343 (421)
                      .|++||+++ ++.+..+..   |...+               .+++|+  +++|++|+.||.|++||+.++ .....+  
T Consensus       340 ~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~  400 (445)
T 2ovr_B          340 TVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTG-EFIRNLVT  400 (445)
T ss_dssp             CEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTC-CEEEEEEE
T ss_pred             eEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCC-ceeeeeec
Confidence            999999986 888888876   33332               678884  689999999999999999987 555555  


Q ss_pred             ---ecCCCCccceeeecCCcccccccceeeeecccCc
Q 014644          344 ---EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       344 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~  377 (421)
                         .+|.+.+..++|+|+       ...|++|+.||.
T Consensus       401 ~~~~~~~~~v~~~~~s~~-------~~~la~~~~dg~  430 (445)
T 2ovr_B          401 LESGGSGGVVWRIRASNT-------KLVCAVGSRNGT  430 (445)
T ss_dssp             CTTGGGTCEEEEEEECSS-------EEEEEEECSSSS
T ss_pred             cccCCCCceEEEEEecCC-------EEEEEEcccCCC
Confidence               478889999999988       448999999884

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.8e-28  Score=217.80  Aligned_cols=247  Identities=17%  Similarity=0.208  Sum_probs=185.1

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      -+|...|++++|  ++++++|++|+.|++|++||+++++...... .+...+.+            ...  ....++.++
T Consensus        64 ~~~~~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~~~~------------~~~--~~~~l~s~~  126 (318)
T 4ggc_A           64 EQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGS------------LSW--NSYILSSGS  126 (318)
T ss_dssp             CSTTCCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEE------------EEE--ETTEEEEEE
T ss_pred             cCCCCeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEec-CccceEEE------------eec--CCCEEEEEe
Confidence            368889999999  7999999999999999999999988433322 23332221            111  122344443


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ...+++|+....  ...+..+ .+|...+..+.+++++++|+++ .|++|++||+++........    .....+..
T Consensus       127 ~--~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~  197 (318)
T 4ggc_A          127 R--SGHIHHHDVRVA--EHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG  197 (318)
T ss_dssp             T--TSEEEEEETTSS--SCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCS
T ss_pred             c--CCceEeeecCCC--ceeEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCC
Confidence            3  445667766554  2445556 7999999999999999999999 99999999998433221111    11256778


Q ss_pred             CeeEEEEecCCCCeEE--EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-
Q 014644          189 VITSAEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  265 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~--s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-  265 (421)
                      .|.++.++|++...+.  +++.+++|++||.+.....    ....              +...+..+.|+|++..++++ 
T Consensus       198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEE
Confidence            8999999998855553  4557899999999876532    1111              25678999999999988764 


Q ss_pred             -cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          266 -DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       266 -~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                       .. +.|++||+++ ++++..+.+|...+               ++++|+|+|++|++|+.||+|+|||+...
T Consensus       260 g~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          260 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence             23 9999999987 89999999998865               89999999999999999999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=4.1e-28  Score=226.51  Aligned_cols=284  Identities=10%  Similarity=0.096  Sum_probs=209.3

Q ss_pred             ccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           26 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        26 ~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      .+..+.+...+.+++|  +|++.++++++.|++|++||+.+++......                               
T Consensus       115 ~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------------------------  161 (433)
T 3bws_A          115 FISRFKTGFQPKSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSP-------------------------------  161 (433)
T ss_dssp             EEEEEECSSCBCCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECC-------------------------------
T ss_pred             EEEEEcCCCCceEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecC-------------------------------
Confidence            3444445566778999  6777788888889999999998876322110                               


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                                              ...+ .+|...|.+++|+|++++++++ .|+.|++||++ .++....+       .
T Consensus       162 ------------------------~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~-~~~~~~~~-------~  208 (433)
T 3bws_A          162 ------------------------PEKY-KKKLGFVETISIPEHNELWVSQMQANAVHVFDLK-TLAYKATV-------D  208 (433)
T ss_dssp             ------------------------CHHH-HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT-TCCEEEEE-------E
T ss_pred             ------------------------cccc-cccCCceeEEEEcCCCEEEEEECCCCEEEEEECC-CceEEEEE-------c
Confidence                                    0112 5788999999999999999999 99999999998 45555444       5


Q ss_pred             ccCCCeeEEEEecCCCCeEE-EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      .|...+.+++|+|++ ..++ +++.|+.|++||+++++..    ..+..              ...+.+++|+|+|++++
T Consensus       209 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          209 LTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEI----RKTDK--------------IGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             CSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEE----EECCC--------------CSEEEEEEECTTSSEEE
T ss_pred             CCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEE----EEecC--------------CCCceEEEEcCCCCEEE
Confidence            678889999999999 6664 5558999999999887543    23333              34589999999999988


Q ss_pred             Eec---------CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE-EEeeCCCeEEEEec
Q 014644          264 SRD---------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSH  333 (421)
Q Consensus       264 ~~~---------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~~s~dg~i~iwd~  333 (421)
                      +++         ++.|++||+++ ++.+..+.... .+               .+++|+|+++.+ ++++.|+.|++||+
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDK-EKLIDTIGPPG-NK---------------RHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTT-TEEEEEEEEEE-CE---------------EEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCccccCCCeEEEEECCC-CcEEeeccCCC-Cc---------------ceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            765         47999999986 66665553222 22               689999999755 66688999999999


Q ss_pred             CCCCCceeEEecCCCCccceeeecCCcccccccceeeeecc---------------cCc-ccCCC-CCccccccccccCe
Q 014644          334 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY---------------RQA-HENSS-SGHHELSYNLSSKL  396 (421)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~---------------d~~-~iw~~-~~~~~~~~~~~~~v  396 (421)
                      .++ .....+. +...+..++++|+  ++     .|++++.               ||. .+|+. .............+
T Consensus       333 ~~~-~~~~~~~-~~~~~~~~~~s~d--g~-----~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~  403 (433)
T 3bws_A          333 KEK-KVQKSIP-VFDKPNTIALSPD--GK-----YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQP  403 (433)
T ss_dssp             TTT-EEEEEEE-CSSSEEEEEECTT--SS-----EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCC-cEEEEec-CCCCCCeEEEcCC--CC-----EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCC
Confidence            976 4444444 6677889999988  33     5555544               467 88843 22233333345679


Q ss_pred             EEEEEccCCCeEEEec--CCceEEEe
Q 014644          397 LHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       397 ~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      ..++|+|++++|++++  ++.+++|+
T Consensus       404 ~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          404 TGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             EEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             ceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            9999999999998765  67799997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-28  Score=214.95  Aligned_cols=238  Identities=11%  Similarity=0.157  Sum_probs=193.2

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      ++.+.+ .+|.+.|++++| |++++|+++ .||.|++||+. ..+....+       ..|...|.+++|+|++ .+|+++
T Consensus         9 ~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~   77 (313)
T 3odt_A            9 QLSATL-KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVV-------YTGQGFLNSVCYDSEK-ELLLFG   77 (313)
T ss_dssp             EEEEEE-CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEE-------EECSSCEEEEEEETTT-TEEEEE
T ss_pred             HHHHHh-hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEe-------ecCCccEEEEEECCCC-CEEEEe
Confidence            666777 899999999999 999999999 99999999998 55555444       6788999999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|+.|++|++...... +....             +..|...|.+++|  +++++++++. +.|++||  . ++....+
T Consensus        78 ~~dg~i~~~~~~~~~~~-~~~~~-------------~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~  138 (313)
T 3odt_A           78 GKDTMINGVPLFATSGE-DPLYT-------------LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNL  138 (313)
T ss_dssp             ETTSCEEEEETTCCTTS-CC-CE-------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEE
T ss_pred             cCCCeEEEEEeeecCCC-Ccccc-------------hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEec
Confidence            99999999999874321 11122             3445889999999  5778888866 9999999  3 6777788


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCCCeEEEEecCCCCCceeEEec-CCCCccceeeecCCcccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARR  363 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  363 (421)
                      ..|...+               .+++|.| ++.++++++.||.|++||..   .....+.. |...+..+.++++     
T Consensus       139 ~~~~~~v---------------~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~-----  195 (313)
T 3odt_A          139 QAHNASV---------------WDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDD-----  195 (313)
T ss_dssp             ECCSSCE---------------EEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEET-----
T ss_pred             ccCCCce---------------eEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCC-----
Confidence            8887754               7889888 89999999999999999933   44566666 9999999999988     


Q ss_pred             cccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          364 SSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                        .. +++++.++. ++|  ..++.+....+|...|++++|+|++.+++.+.++.+++|+.
T Consensus       196 --~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~  253 (313)
T 3odt_A          196 --GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSK  253 (313)
T ss_dssp             --TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred             --Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEEC
Confidence              33 889999999 999  44556666678999999999999996444444778999973

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.9e-28  Score=210.30  Aligned_cols=283  Identities=11%  Similarity=0.040  Sum_probs=182.5

Q ss_pred             cEEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCce-eEEeeecCCC-CCcccccccccccceeeccCCCCce-eeeeccc
Q 014644           35 KINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHF-PFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEW  110 (421)
Q Consensus        35 ~V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~  110 (421)
                      .+.++.|- .++ .+.++......+|++|+..++. -+++...+++ .+|..+.+.+....+.|.+...-.. .+....+
T Consensus        41 ~~~~~~~~-~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWE-RAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC-----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeec-cCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            46677772 233 3345555557799999998872 2333333343 4677777777666666655532211 0000000


Q ss_pred             ccc-cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          111 TEN-MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       111 ~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      ..+ ....          +.+-.  .+|...|..+   ++++++.++   .|+.|++|++.+.++.+..+       .+|
T Consensus       120 spd~~~~~----------~~l~s--~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-------~~~  177 (356)
T 2w18_A          120 SSDDESEK----------QVLLK--SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-------FLM  177 (356)
T ss_dssp             ------CC----------EEEEE--EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-------EEC
T ss_pred             CCCccccc----------cEEEe--CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee-------ccC
Confidence            000 0000          11111  2444445554   567776664   49999999997566665543       678


Q ss_pred             CCCeeEEEEec---CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          187 TEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       187 ~~~v~~~~~~p---~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      ...+..++|+|   ++ .+|++++.|++|+|||+.+++..    +.+..|          ..+...+.+++|+|+|++++
T Consensus       178 ~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l----~tL~g~----------~~~v~~v~~vafSpdG~~lv  242 (356)
T 2w18_A          178 PPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLL----KKMHID----------DSYQASVCHKAYSEMGLLFI  242 (356)
T ss_dssp             CCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEE----EEEECC----------C---CCCEEEEEEETTEEEE
T ss_pred             CCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEE----EEEcCC----------CcceeeeEEEEECCCCCEEE
Confidence            88899999999   66 89999999999999999998755    444432          11134677889999999874


Q ss_pred             ------------EecC-CeEEEEECCCCCcceeEEe-----eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644          264 ------------SRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  325 (421)
Q Consensus       264 ------------~~~~-~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d  325 (421)
                                  +|+. ++|++||..+ ++.+..+.     +|....               .+..+  ++.++++|+.|
T Consensus       243 s~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~---------------lsg~~--sg~~lASgS~D  304 (356)
T 2w18_A          243 VLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRF---------------LEGDV--KDHCAAAILTS  304 (356)
T ss_dssp             EEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCE---------------EEEEE--ETTEEEEEETT
T ss_pred             EeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCccee---------------Ecccc--CCCEEEEEcCC
Confidence                        4554 8999999986 77665542     222210               23333  48899999999


Q ss_pred             CeEEEEecCCCCCceeEEecCCCCcc-ceeeecCCcccccccceeeeecccCc-ccCC
Q 014644          326 NLLRIFSHGVGSAGGITVEAGKNENR-KPILQAAPRARRSSLSNLTRGLYRQA-HENS  381 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~  381 (421)
                      ++|+|||+.++ +...++.+|...+. .++|+|+  ++     +|++|+.|++ +||+
T Consensus       305 gTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPD--G~-----~LaSGS~D~TIklWd  354 (356)
T 2w18_A          305 GTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGT--DS-----HLLAGQKDGNIFVYH  354 (356)
T ss_dssp             SCEEEEETTTC-SEEEEECCC--CCCCEEEECSS--SS-----EEEEECTTSCEEEEE
T ss_pred             CcEEEEECCCC-cEEEEecCCCCCeEEEEEECCC--CC-----EEEEEECCCcEEEec
Confidence            99999999998 77888999988766 4899998  33     8999999999 9983

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.8e-28  Score=221.45  Aligned_cols=239  Identities=11%  Similarity=0.095  Sum_probs=185.3

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCC-eEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~d~~v  212 (421)
                      .+|.+.|.+++|+|++++|+++ .|+.|++|++..........     .+.+|...|.+++|+|++ . +|++++.||.|
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i   81 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----QSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI   81 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----EEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccce-----eeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence            7899999999999999999999 99999999998443111111     125788999999999998 9 99999999999


Q ss_pred             EEEEC-CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC--------Ccce
Q 014644          213 RLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD--------STPV  282 (421)
Q Consensus       213 ~iwd~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~--------~~~~  282 (421)
                      ++||+ ..+..     ..+..           ..|...|.+++|+| +.++++++. +.|++||+++.        ++++
T Consensus        82 ~~wd~~~~~~~-----~~~~~-----------~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           82 LKVDLIGSPSF-----QALTN-----------NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEECSSSSSSE-----EECBS-----------CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEeccCCce-----Eeccc-----------cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence            99999 76542     22222           01478999999999 999998876 99999998731        2233


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC-CCC-ceeEEecCCCCccceeeec-CC
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV-GSA-GGITVEAGKNENRKPILQA-AP  359 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~  359 (421)
                      ..+. +...               +.+++|+|++  +++++.|+.|++||+++ ... .......|...+..+.|+| + 
T Consensus       145 ~~~~-~~~~---------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-  205 (342)
T 1yfq_A          145 NNTK-VKNK---------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE-  205 (342)
T ss_dssp             SSSS-SCCC---------------EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-
T ss_pred             eEEe-eCCc---------------eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC-
Confidence            3333 3332               2799999987  89999999999999998 533 3445567888999999998 7 


Q ss_pred             cccccccceeeeecccCc-ccC--CCC------Ccccccccccc---------CeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          360 RARRSSLSNLTRGLYRQA-HEN--SSS------GHHELSYNLSS---------KLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       360 ~~~~~~~~~l~~g~~d~~-~iw--~~~------~~~~~~~~~~~---------~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                            ...|++++.++. ++|  ...      ........|..         .|.+++|+|++++|++++ ++.+++|+
T Consensus       206 ------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          206 ------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             ------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             ------CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence                  338999999999 998  332      33444445544         999999999999999998 55799997


Q ss_pred             C
Q 014644          421 A  421 (421)
Q Consensus       421 ~  421 (421)
                      .
T Consensus       280 ~  280 (342)
T 1yfq_A          280 L  280 (342)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-28  Score=226.82  Aligned_cols=258  Identities=9%  Similarity=-0.024  Sum_probs=189.0

Q ss_pred             ceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCce
Q 014644           92 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  171 (421)
Q Consensus        92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~  171 (421)
                      .+.+++++++++.+++++.  +.+++  +.      +..+.+ .+|...|++++|+|+|      .++.+.+|+.+ ...
T Consensus        17 ~v~sv~~SpDG~~iASas~--D~TV~--d~------~~~~~l-~gh~~~v~~V~FsPdg------~~~~~~~~~~~-~~~   78 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFP--DISIG--QP------KYAKDI-NCNSKNLFHVKEFPLE------FENKLDFELAQ-QNG   78 (588)
T ss_dssp             SSCCEEECTTSCEEEECSS--SEEEE--EE------CCCSCC-SSBGGGTEEEEEECCC------CCCTTTTSCCC-SSC
T ss_pred             cEEEEEECCCCCEEEEEcC--Cceee--cc------ccccee-cCCCccEEEEEECCCC------CcceEEEEeCC-Cce
Confidence            5666777788888888776  44555  32      333444 7999999999999999      45555555544 222


Q ss_pred             eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644          172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  251 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  251 (421)
                      ..        ++ .|...|.+++|+|+| ..||+++.||.|++||...  .    ...+. |... .       ....+.
T Consensus        79 ~~--------~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~----l~~l~-~~~~-~-------~~~sv~  133 (588)
T 2j04_A           79 LL--------NS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--M----LTNLD-SKGN-L-------SSRTYH  133 (588)
T ss_dssp             SS--------TT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--E----EEECC-CSSC-S-------TTTCEE
T ss_pred             Ee--------ec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--e----eeecc-CCCc-c-------ccccEE
Confidence            11        11 457899999999999 9999999999999999543  1    12222 2000 0       012599


Q ss_pred             EEEEcCCCCEEEEecC-CeEEEEECCCCCc-------ceeEEe----eccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644          252 DIKFANDGQHLLSRDY-MNLKLWDIRMDST-------PVATFK----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  319 (421)
Q Consensus       252 ~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  319 (421)
                      +++|||||++|++|++ |+|+|||+.. +.       .+..+.    +|...+               .+++|+|+|  +
T Consensus       134 svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~ti~~~~~gh~~~V---------------~sVawSPdg--L  195 (588)
T 2j04_A          134 CFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESSIRLSDAGSKDWV---------------THIVWYEDV--L  195 (588)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEEEECSCTTCCCCE---------------EEEEEETTE--E
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCC-CccccccceeeeeeecccccccccE---------------EEEEEcCCc--E
Confidence            9999999999999986 9999999986 53       245653    334433               899999999  8


Q ss_pred             EEeeCCCeEEEEecCCCCC--ceeEE-ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC-Ccc-ccccccc
Q 014644          320 ATGSYSNLLRIFSHGVGSA--GGITV-EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH-ELSYNLS  393 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~-~~~~~~~  393 (421)
                      ++++.|+.|++||+..+..  ...++ .+|...|.+++|+ +   .     .|++++ ++. ++|+.. +.. ....+|.
T Consensus       196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g---~-----~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-D---Y-----KVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T---T-----EEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-C---C-----EEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            8899999999999987642  23456 4889999999998 2   2     688887 467 999533 333 3334899


Q ss_pred             cCeEEEEE--ccCCCeEEEecCCceEEEe
Q 014644          394 SKLLHLAW--HPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       394 ~~v~~~~~--spd~~~la~~~~~~~~i~~  420 (421)
                      ..|.+++|  +||+..|++++.++.++|.
T Consensus       266 ~~V~~va~~~s~d~~~La~a~edG~klw~  294 (588)
T 2j04_A          266 ENFHIIPLNHEKESTILLMSNKTSYKVLL  294 (588)
T ss_dssp             SCCCEEEETTCSSCEEEEECSSCEEEEEE
T ss_pred             ceEEEEEeeeCCCCCEEEEEcCCCCEEEe
Confidence            99999999  9999999999955557775

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=9.7e-28  Score=224.17  Aligned_cols=231  Identities=12%  Similarity=0.198  Sum_probs=187.3

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|.+++|    ++++|++|+.||+|++||+.+++                                          
T Consensus       171 ~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~------------------------------------------  204 (435)
T 1p22_A          171 GHTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGE------------------------------------------  204 (435)
T ss_dssp             CCSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCC------------------------------------------
T ss_pred             CCCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCc------------------------------------------
Confidence            68999999988    47899999999999999998754                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        ++..+ .+|...|.+++|+  +..|+++ .|++|++||+.... .....    ..+.+|...
T Consensus       205 ------------------~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~-~~~~~----~~~~~~~~~  258 (435)
T 1p22_A          205 ------------------MLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT-DITLR----RVLVGHRAA  258 (435)
T ss_dssp             ------------------EEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS-CCEEE----EEECCCSSC
T ss_pred             ------------------EEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC-Cceee----eEecCCCCc
Confidence                              22334 6889999999997  4588888 99999999998433 32111    123789999


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      |.+++|  ++ .+|++++.||.|++||+++++..    ..+..             |...+.++.++  +.++++++. +
T Consensus       259 v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~--~~~l~~g~~dg  316 (435)
T 1p22_A          259 VNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDN  316 (435)
T ss_dssp             EEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEEE--TTEEEEEETTS
T ss_pred             EEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EEEcC-------------CCCcEEEEEeC--CCEEEEEeCCC
Confidence            999999  55 89999999999999999987543    33333             47789999984  678888865 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC--------ce
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GG  340 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~--------~~  340 (421)
                      .|++||+++ ++.+..+.+|...+               .+++|  ++++|++|+.||.|++||+.++..        ..
T Consensus       317 ~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  378 (435)
T 1p22_A          317 TIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL  378 (435)
T ss_dssp             CEEEEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEE
T ss_pred             eEEEEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhe
Confidence            999999987 88888898888765               67777  788999999999999999876521        57


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS  382 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~  382 (421)
                      ..+.+|.+.+..+.+...         .|++|+.||. ++|+.
T Consensus       379 ~~~~~h~~~v~~l~~~~~---------~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          379 RTLVEHSGRVFRLQFDEF---------QIVSSSHDDTILIWDF  412 (435)
T ss_dssp             EEECCCSSCCCCEEECSS---------CEEECCSSSEEEEEC-
T ss_pred             eeccCCCCCeEEEEeCCC---------EEEEEeCCCEEEEEEC
Confidence            788999999999999433         7999999999 99944

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.1e-26  Score=212.00  Aligned_cols=228  Identities=9%  Similarity=0.057  Sum_probs=169.4

Q ss_pred             ceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcCCeEEEEE
Q 014644          140 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd  216 (421)
                      .+.+++|+|++++| +++ .|++|++||+. .++....+       . +...+.+++|+|++ +.|+ +++.++.|++||
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~-------~-~~~~v~~~~~spdg-~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATV-------P-AGSSPQGVAVSPDG-KQVYVTNMASSTLSVID  102 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEE-------E-CSSSEEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEE-------E-CCCCccceEECCCC-CEEEEEECCCCEEEEEE
Confidence            48999999999987 567 89999999998 55665554       2 22389999999999 7665 555679999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      +.+++..    ..+..              ...+.+++|+|+|+++ ++++. +.|++||+++ ++.+..+..+...   
T Consensus       103 ~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~---  160 (391)
T 1l0q_A          103 TTSNTVA----GTVKT--------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSVGRSP---  160 (391)
T ss_dssp             TTTTEEE----EEEEC--------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECCSSE---
T ss_pred             CCCCeEE----EEEeC--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEecCCCc---
Confidence            9987643    23333              3468999999999987 56665 9999999986 7777777665543   


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEE-EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                   .+++|+|++++| ++++.++.|++||+.++ .....+. +...+..++++|+  ++     .|++++
T Consensus       161 -------------~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~--g~-----~l~~~~  218 (391)
T 1l0q_A          161 -------------KGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPE--GT-----KAYVTN  218 (391)
T ss_dssp             -------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTT--SS-----EEEEEE
T ss_pred             -------------ceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCC--CC-----EEEEEe
Confidence                         689999999887 57788999999999876 4444443 4567788899988  33     677666


Q ss_pred             ---ccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEE-Eec-CCceEEEeC
Q 014644          374 ---YRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHYA  421 (421)
Q Consensus       374 ---~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la-~~~-~~~~~i~~~  421 (421)
                         .++. ++|+.. ............+.+++|+|+++.|+ +++ ++.+++|+.
T Consensus       219 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence               5666 899432 22222333344688999999999874 545 667999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=4.1e-27  Score=205.02  Aligned_cols=245  Identities=8%  Similarity=0.037  Sum_probs=168.0

Q ss_pred             CceeeeccccccCCCcccccc-----------cc--ccccEEEEEEEEcCC----CCeEEEEeCCCcEEEeecCCceeEE
Q 014644            9 PEYRYKTEFQSHEPEFDYLKS-----------LE--IEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKK   71 (421)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-----------~~--h~~~V~~v~~~~~~~----~~~l~t~s~d~~v~lwd~~~~~~~~   71 (421)
                      -+|+.+...+.|+.....+..           +|  +...|++++|  +|+    +..+++++.+  +++|++.++++..
T Consensus        74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~  149 (356)
T 2w18_A           74 WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVS  149 (356)
T ss_dssp             SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEE
T ss_pred             ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEE
Confidence            466667777777643322221           12  4568999999  678    8889998854  8899987765322


Q ss_pred             eeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC---
Q 014644           72 IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---  148 (421)
Q Consensus        72 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---  148 (421)
                      .....+                                   +..+++|++...  ++.+..+ .+|...++.++|++   
T Consensus       150 ss~~g~-----------------------------------d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          150 SSGTLS-----------------------------------DQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EESSST-----------------------------------TCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEET
T ss_pred             ecccCC-----------------------------------CCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCC
Confidence            211111                                   346788888442  2566666 68999999999999   


Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc---CCCeeEEEEecCCCCeE------------EEEEcCCeE
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFV  212 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l------------~s~~~d~~v  212 (421)
                      ++++|+++ .|++|+|||++ .+++++++       .+|   ...+.+++|+|++ .++            ++|+.|++|
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~-TGk~l~tL-------~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLK-TGQLLKKM-------HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             STTEEEEEETTSEEEEEETT-TCCEEEEE-------ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEE
T ss_pred             CCceEEEecCCCcEEEEECC-CCcEEEEE-------cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEE
Confidence            78999998 99999999999 66777665       332   3467788999998 765            668899999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      ++||..++...    ..+.. ..       ..+|...+.+..++  +.++++++. ++|+|||+.+ ++.+.++.+|...
T Consensus       263 klWd~~tgk~l----~v~~~-~~-------p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~  327 (356)
T 2w18_A          263 IVINPKTTLSV----GVMLY-CL-------PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQ  327 (356)
T ss_dssp             EEEETTTTEEE----EEEEE-CC-------CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--C
T ss_pred             EEEECCCCEEE----EEEEe-ec-------cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCC
Confidence            99999987643    11110 00       01223333333443  778999875 9999999997 9999999888764


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      +              +..++|+|||++|++|+.|++|+|||+
T Consensus       328 v--------------vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 H--------------WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--------------CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             e--------------EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            3              035899999999999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-27  Score=213.60  Aligned_cols=257  Identities=9%  Similarity=0.005  Sum_probs=182.2

Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC--------c
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------D  170 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~--------~  170 (421)
                      .+...+++|+.  ++.+++|++.++   +++..+ .  ...|.++.|+|+   ++++ .|++|++|+....        .
T Consensus        46 ~d~~~l~sg~~--Dg~v~iwd~~~~---~~~~~~-~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           46 YDKWVCMCRCE--DGALHFTQLKDS---KTITTI-T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEEEEEE--TTEEEEEEESSS---SCEEEE-E--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             CCCCEEEEECC--CCcEEEEECCCC---cEEEEE-e--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            34556666665  678999999887   666666 2  567889999988   8888 9999999987621        1


Q ss_pred             eeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccccccccc
Q 014644          171 QCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  248 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  248 (421)
                      +.++..      ..+|...|.+++|+|  ++ .++++++.|++|++||+++++..    .....            .+..
T Consensus       115 ~~~~~~------~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~~------------~~~~  171 (343)
T 3lrv_A          115 KVLREI------EVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY----IVHSA------------KSDV  171 (343)
T ss_dssp             CEEEEE------ECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE----EEECC------------CSSC
T ss_pred             ceeEEe------ecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEec------------CCCC
Confidence            111111      135668899999999  98 99999999999999999987642    22211            1245


Q ss_pred             ceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcce-eEEee-ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644          249 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS  325 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d  325 (421)
                      .+.+++|+|+|.+|++|+. +.|++||+++ ++.+ ..+.. |...+               .+++|+|++.+|++++ |
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v---------------~~l~fs~~g~~l~s~~-~  234 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSRFPVDEEAKI---------------KEVKFADNGYWMVVEC-D  234 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEECCCCTTSCE---------------EEEEECTTSSEEEEEE-S
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccEEeccCCCCE---------------EEEEEeCCCCEEEEEe-C
Confidence            7999999999999999865 9999999997 6655 67777 77654               8999999999999999 4


Q ss_pred             CeEEEEecCCCCCceeEEe---cCCCCcc--ceeeecCCcccccccceeeeecc-cCc-ccCCC--CCccccccccccCe
Q 014644          326 NLLRIFSHGVGSAGGITVE---AGKNENR--KPILQAAPRARRSSLSNLTRGLY-RQA-HENSS--SGHHELSYNLSSKL  396 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~-d~~-~iw~~--~~~~~~~~~~~~~v  396 (421)
                      +.|++||+++.. ....+.   .|...+.  .++|+|+  +.     +|++++. ++. ++|..  .......    ..+
T Consensus       235 ~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--g~-----~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~  302 (343)
T 3lrv_A          235 QTVVCFDLRKDV-GTLAYPTYTIPEFKTGTVTYDIDDS--GK-----NMIAYSNESNSLTIYKFDKKTKNWTK----DEE  302 (343)
T ss_dssp             SBEEEEETTSST-TCBSSCCCBC-----CCEEEEECTT--SS-----EEEEEETTTTEEEEEEECTTTCSEEE----EEE
T ss_pred             CeEEEEEcCCCC-cceeecccccccccccceEEEECCC--CC-----EEEEecCCCCcEEEEEEcccccceEe----cCc
Confidence            599999999873 333333   3445555  4889888  43     8888877 777 99933  2211111    456


Q ss_pred             EEEEEcc---CCCeEEEec-CCceEEE
Q 014644          397 LHLAWHP---TTNLIACAN-GNSLFFH  419 (421)
Q Consensus       397 ~~~~~sp---d~~~la~~~-~~~~~i~  419 (421)
                      ..++|+|   +.+.|++++ ++.+.++
T Consensus       303 ~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          303 SALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EECCC----CCCCEEEEEEETTEEEEE
T ss_pred             eeEecCccccccceeEEEecCCceEEE
Confidence            6778888   777777776 4445544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-26  Score=217.91  Aligned_cols=241  Identities=15%  Similarity=0.075  Sum_probs=180.3

Q ss_pred             cccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecC--CceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           31 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      +|.+.|++++|  +|++++| ++++.||+|+|||+.  +++..                                     
T Consensus       100 ~~~~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------------------------------  140 (450)
T 2vdu_B          100 PIYSYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVL-------------------------------------  140 (450)
T ss_dssp             CCCCCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCE-------------------------------------
T ss_pred             ccCCceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCcee-------------------------------------
Confidence            56778999999  7999986 899999999999998  54311                                     


Q ss_pred             cccccccceeEEeecccceeeeeeeec-CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeee-eeecCCCCCC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMD  184 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~-~~~~~~~~~~  184 (421)
                                             +.+. ..|...|.+++|+|++++|+++ .++.|++|++.. ..... ..    ..+.
T Consensus       141 -----------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~-~~~~~~~~----~~~~  192 (450)
T 2vdu_B          141 -----------------------KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS-IPEEKFTQ----EPIL  192 (450)
T ss_dssp             -----------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CCCSSCCC----CCSE
T ss_pred             -----------------------eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC-cccccccc----eeee
Confidence                                   1110 2567889999999999999999 999999999983 33221 11    1347


Q ss_pred             ccCCCeeEEEEecC---CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          185 DLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       185 ~~~~~v~~~~~~p~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      +|...|.+++|+|+   + .+|++++.|+.|++||++++...    ..+            +.+|...|.+++|+ ++++
T Consensus       193 ~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~~------------~~~h~~~v~~~~~s-d~~~  254 (450)
T 2vdu_B          193 GHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DKW------------LFGHKHFVSSICCG-KDYL  254 (450)
T ss_dssp             ECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EEE------------CCCCSSCEEEEEEC-STTE
T ss_pred             cccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----eee------------ecCCCCceEEEEEC-CCCE
Confidence            79999999999999   8 89999999999999999876533    211            12347899999999 9999


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCccccccc----------ccCCCcceeeeEEEEcCCCCEEEEee-CCCeEE
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD----------LYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR  329 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~  329 (421)
                      |++++. +.|++||+++ ++.+..+..+.........          ......-..+.+++|+|++++|++++ .|+.|+
T Consensus       255 l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          255 LLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            999876 9999999987 7877777644311000000          00001112347899999999999999 899999


Q ss_pred             EEec--CCCC--CceeEEecCCCCccceeeecC
Q 014644          330 IFSH--GVGS--AGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       330 iwd~--~~~~--~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      +|++  .++.  .....+..| ..+..++|+|+
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             EEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence            9999  4332  335567777 88999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=7.8e-27  Score=212.60  Aligned_cols=245  Identities=13%  Similarity=0.140  Sum_probs=186.4

Q ss_pred             eeeeeecCCCCcceEEEeecCC---CCEEEEE-cCCcEEEEeCCCCceee-eeeecCCCCCCccCCCeeEEEEecCCCCe
Q 014644          128 RCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDDLTEVITSAEFHPIYCNL  202 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  202 (421)
                      +.++.+ .+|.+.|++++|+|+   |++|++| .|+.|++||+...+... ..+       .+|...|.+++|+|++ .+
T Consensus        30 ~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~~  100 (368)
T 3mmy_A           30 KDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-------QMHTGPVLDVCWSDDG-SK  100 (368)
T ss_dssp             CCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-------EECSSCEEEEEECTTS-SE
T ss_pred             ceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-------ccccCCEEEEEECcCC-CE
Confidence            555666 899999999999999   6999999 99999999998534443 333       6799999999999999 99


Q ss_pred             EEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE--cCCCCEEEEecC-CeEEEEECCCCC
Q 014644          203 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       203 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      |++++.||.|++||+.+++..    . +.             .|...|.+++|  +|++++|++++. +.|++||+++ +
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~----~-~~-------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~  161 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAI----Q-IA-------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-S  161 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEE----E-EE-------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC-S
T ss_pred             EEEEcCCCcEEEEEcCCCCce----e-ec-------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-C
Confidence            999999999999999987643    2 22             24789999999  899999999875 9999999987 7


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAA  358 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  358 (421)
                      +.+..+..+...                .++.+.  +..+++++.++.+++|++.........+. .+......+.+.+.
T Consensus       162 ~~~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 3mmy_A          162 NPMMVLQLPERC----------------YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD  223 (368)
T ss_dssp             SCSEEEECSSCE----------------EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred             cEEEEEecCCCc----------------eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence            888888766532                344444  45888999999999999987643333322 23344555555554


Q ss_pred             CcccccccceeeeecccCc-ccCCCCC-----cccccccccc------------CeEEEEEccCCCeEEEec-CCceEEE
Q 014644          359 PRARRSSLSNLTRGLYRQA-HENSSSG-----HHELSYNLSS------------KLLHLAWHPTTNLIACAN-GNSLFFH  419 (421)
Q Consensus       359 ~~~~~~~~~~l~~g~~d~~-~iw~~~~-----~~~~~~~~~~------------~v~~~~~spd~~~la~~~-~~~~~i~  419 (421)
                      ....   ...+++++.|+. ++|....     .......|..            .|++++|+|++++|++++ ++.|++|
T Consensus       224 ~~~~---~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          224 KQNK---PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             TTSC---EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CCCC---CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence            2211   224999999999 9993332     2333445544            799999999999999998 5669999


Q ss_pred             eC
Q 014644          420 YA  421 (421)
Q Consensus       420 ~~  421 (421)
                      +.
T Consensus       301 d~  302 (368)
T 3mmy_A          301 DK  302 (368)
T ss_dssp             ET
T ss_pred             EC
Confidence            74

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=4.2e-25  Score=203.28  Aligned_cols=314  Identities=10%  Similarity=0.065  Sum_probs=212.3

Q ss_pred             cccccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      +..+.+...+.+++|  +++++++ ++++.|++|++||+.+++......  .+..+.            ++.+++++..+
T Consensus        25 ~~~~~~~~~~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~------------~~~~spdg~~l   88 (391)
T 1l0q_A           25 TATIPVGSNPMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGSSPQ------------GVAVSPDGKQV   88 (391)
T ss_dssp             EEEEECSSSEEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSSSEE------------EEEECTTSSEE
T ss_pred             EEEeecCCCcceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CCCCcc------------ceEECCCCCEE
Confidence            344555667999999  7898876 677799999999999887443322  222333            44444555444


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      ..+.. ..+.+++|+..+.   +.+..+ .. ...+.+++|+|+++.| +++ .++.|++||+. .++....+       
T Consensus        89 ~~~~~-~~~~v~v~d~~~~---~~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------  154 (391)
T 1l0q_A           89 YVTNM-ASSTLSVIDTTSN---TVAGTV-KT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------  154 (391)
T ss_dssp             EEEET-TTTEEEEEETTTT---EEEEEE-EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------
T ss_pred             EEEEC-CCCEEEEEECCCC---eEEEEE-eC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------
Confidence            32221 1357899999887   666666 33 4568999999999987 567 89999999998 55555544       


Q ss_pred             CccCCCeeEEEEecCCCCeE-EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      ..+ ..+.+++|+|++ +.| ++++.++.|++||+++++..    ..+..              ...+.+++|+|+|+++
T Consensus       155 ~~~-~~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l  214 (391)
T 1l0q_A          155 SVG-RSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKA  214 (391)
T ss_dssp             ECC-SSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEE
T ss_pred             ecC-CCcceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEE
Confidence            223 457999999999 666 67778999999999887543    22222              4578899999999988


Q ss_pred             EEec---C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE-EEeeCCCeEEEEecCCCC
Q 014644          263 LSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       263 ~~~~---~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~~s~dg~i~iwd~~~~~  337 (421)
                      ++++   . +.|++||+++ ++.+..+..+...                .+++|+|++++| ++++.|+.|++||+.++ 
T Consensus       215 ~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-  276 (391)
T 1l0q_A          215 YVTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-  276 (391)
T ss_dssp             EEEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred             EEEecCcCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-
Confidence            8764   4 9999999986 7777777765543                589999999987 57788999999999987 


Q ss_pred             CceeEEecCCCCcc---cee------------eecCCccccccc---ceeeeecccCc-ccCCCCCccccccccccCeEE
Q 014644          338 AGGITVEAGKNENR---KPI------------LQAAPRARRSSL---SNLTRGLYRQA-HENSSSGHHELSYNLSSKLLH  398 (421)
Q Consensus       338 ~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~---~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~  398 (421)
                      .....+..|..+..   .+.            |..+......+.   -.+...+.+.. ++|+.+.....  .+..  ..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~--~~~~--~~  352 (391)
T 1l0q_A          277 TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS--KKQN--PT  352 (391)
T ss_dssp             EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE--CSSS--CE
T ss_pred             cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc--CcCC--Ce
Confidence            56666666655432   112            221100000000   23555566666 88844322211  1112  24


Q ss_pred             EEEccCCCeEEEec
Q 014644          399 LAWHPTTNLIACAN  412 (421)
Q Consensus       399 ~~~spd~~~la~~~  412 (421)
                      ..|+|+|.+.+...
T Consensus       353 ~~~~~~g~y~~~~~  366 (391)
T 1l0q_A          353 HTYSETGIYTVRLT  366 (391)
T ss_dssp             ECCSSCEEEEEEEE
T ss_pred             EEeCCCceEEEEEE
Confidence            67899988876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=6e-26  Score=204.91  Aligned_cols=223  Identities=12%  Similarity=0.096  Sum_probs=167.6

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|...|++++|++..++.+|++++.|++|++||+.+++...      ..                               
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~------~~-------------------------------   97 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC------SG-------------------------------   97 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT------SS-------------------------------
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc------cc-------------------------------
Confidence            68999999999432268999999999999999998764100      00                               


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeee------cCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVD------MKPS  181 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~------~~~~  181 (421)
                                    ...+++..+ .+|...|.+++|+|+  +++|+++ .|+.|++||++.. +....+.      ....
T Consensus        98 --------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           98 --------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP-SDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             --------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST-TCTTCCEEEEEEESCSC
T ss_pred             --------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh-HHhcccccccccccccc
Confidence                          001444555 789999999999999  9999998 9999999999843 3222111      1111


Q ss_pred             CCCccCCCeeEEEEecC---CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          182 NMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                      ....|...+.+++|+|+   + ..+++++.|+.+.+|+...+...  ....             +.+|...|.+++|+|+
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK-------------LPGHKSLIRSISWAPS  225 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE-------------CCCCCSCEEEEEECCC
T ss_pred             ccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee-------------cCCCCcceeEEEECCC
Confidence            22467889999999997   6 89999999999988887765421  0122             2345889999999999


Q ss_pred             C----CEEEEecC-CeEEEEECCCCC---------------------------------------------cceeEEeec
Q 014644          259 G----QHLLSRDY-MNLKLWDIRMDS---------------------------------------------TPVATFKIH  288 (421)
Q Consensus       259 ~----~~l~~~~~-~~i~i~d~~~~~---------------------------------------------~~~~~~~~~  288 (421)
                      +    ++|++++. +.|++||++...                                             +.+..+.+|
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence            8    78998876 999999997521                                             233344444


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      ...+               .+++|+|++++|++++.||.|++|++.+++
T Consensus       306 ~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          306 NGEV---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SSCE---------------EEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cccE---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            4433               899999999999999999999999999873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.6e-26  Score=213.11  Aligned_cols=213  Identities=17%  Similarity=0.260  Sum_probs=165.3

Q ss_pred             ccccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|...|.+++|  ++++. +|++|+.||+|++||+.++.....                                    
T Consensus       178 ~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------  219 (430)
T 2xyi_A          178 RGHQKEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHR------------------------------------  219 (430)
T ss_dssp             ECCSSCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGG------------------------------------
T ss_pred             cCCCCCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc------------------------------------
Confidence            378999999999  67777 999999999999999987431000                                    


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCc--eeeeeeecCCCCCC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMD  184 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~--~~~~~~~~~~~~~~  184 (421)
                                       .......+ .+|...|.+++|+| ++.+|+++ .|+.|++||++...  .....+       .
T Consensus       220 -----------------~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-------~  274 (430)
T 2xyi_A          220 -----------------VIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-------D  274 (430)
T ss_dssp             -----------------EEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-------E
T ss_pred             -----------------eeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-------e
Confidence                             00223344 68999999999999 67888888 99999999998442  233332       5


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC-EEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  263 (421)
                      .|...|.+++|+|++..+|++++.||.|++||++.....   ...+..             |...|.+++|+|+++ +|+
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~-------------h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFES-------------HKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEC-------------CSSCEEEEEECSSCTTEEE
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeec-------------CCCCEEEEEECCCCCCEEE
Confidence            788999999999998557999999999999999874321   233333             478999999999986 577


Q ss_pred             EecC-CeEEEEECCCCC-------------cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEeeCCCeE
Q 014644          264 SRDY-MNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLL  328 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s~dg~i  328 (421)
                      +++. +.|++||+...+             +.+..+.+|...+               .+++|+|+++ +|++++.||.|
T Consensus       339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~dg~i  403 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSEDNIM  403 (430)
T ss_dssp             EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETTSEE
T ss_pred             EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECCCCE
Confidence            7755 999999997522             3444455555543               7999999998 89999999999


Q ss_pred             EEEecCCC
Q 014644          329 RIFSHGVG  336 (421)
Q Consensus       329 ~iwd~~~~  336 (421)
                      +||++...
T Consensus       404 ~iw~~~~~  411 (430)
T 2xyi_A          404 QVWQMAEN  411 (430)
T ss_dssp             EEEEECHH
T ss_pred             EEeEcccc
Confidence            99998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=7.3e-26  Score=205.42  Aligned_cols=235  Identities=8%  Similarity=-0.008  Sum_probs=170.3

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~  206 (421)
                      +++..+ ..|...|++++|+|||++|++|.+..+++|++. ........         +...+..+++.+++ +.+ +++
T Consensus        10 ~~~~~~-~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~   77 (355)
T 3vu4_A           10 NPIVPE-NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQ---------EMRHLSKVRMLHRT-NYVAFVT   77 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEE---------ECSCCCEEEECTTS-SEEEEEC
T ss_pred             CCcccc-ccCCCceEEEEECCCCCEEEEEcCCEEEEEecC-Ccceeeee---------ecCCeEEEEEcCCC-CEEEEEE
Confidence            555555 789999999999999999999944458999988 33333221         22247888899987 655 567


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|++|++||+.+++..    ..+..              ...|.+++|+++.  ++++.++.|++||+.+..+.+..+.
T Consensus        78 ~~d~~v~iWd~~~~~~~----~~~~~--------------~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDV----SRIKV--------------DAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             SSTTEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCE
T ss_pred             CCccEEEEEECCCCcEE----EEEEC--------------CCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEec
Confidence            78899999999987644    22222              5689999999764  5555568999999986325555554


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEE--eeCCCeEEEEecCCCCC---------------ceeEEecCCCC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSNLLRIFSHGVGSA---------------GGITVEAGKNE  349 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~--~s~dg~i~iwd~~~~~~---------------~~~~~~~~~~~  349 (421)
                      . ..                 ..+++++  .+++.  |+.||.|++||+.++..               ....+.+|..+
T Consensus       138 ~-~~-----------------~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~  197 (355)
T 3vu4_A          138 R-FG-----------------GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP  197 (355)
T ss_dssp             E-EE-----------------EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC
T ss_pred             c-CC-----------------ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc
Confidence            4 11                 3466777  55655  68899999999997630               16788999999


Q ss_pred             ccceeeecCCcccccccceeeeecccCc--ccC--CCCCcccccc-c-cccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          350 NRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSY-N-LSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~g~~d~~--~iw--~~~~~~~~~~-~-~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      |.+++|+|+  +     .+|++|+.|+.  ++|  ..++.+.... + |...|.+++|+||+++||+++ ++.+++|+.
T Consensus       198 v~~~~~s~~--g-----~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          198 IKMVRLNRK--S-----DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             EEEEEECTT--S-----SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             eEEEEECCC--C-----CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            999999998  3     48999999994  999  3345555555 4 899999999999999999998 456999973

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.9e-25  Score=206.77  Aligned_cols=312  Identities=12%  Similarity=0.088  Sum_probs=207.6

Q ss_pred             cccEEEEEEEEcCCC-CeEEEEe----CCC----cEEEeec--CCceeE-EeeecCCCCCcccccccccccceeeccC--
Q 014644           33 EEKINRVRWCAAPNG-SMFILST----NDK----TIKLWKV--RDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHN--   98 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~-~~l~t~s----~d~----~v~lwd~--~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~--   98 (421)
                      ...++...|  .+.+ .++++|+    .||    +|+|||+  .+++.. ......+...+..+++...+........  
T Consensus        62 ~~~~~~~~w--~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           62 AQEVQPAAW--SALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             GGGCCHHHH--HTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCcCHHHH--HhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            346777888  4554 5676876    467    9999999  777622 2222234444544444321110000000  


Q ss_pred             CCCceeeeecccc-cc---cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCC---cEEEEeCCCCc
Q 014644           99 PPSFAHGYHLEWT-EN---MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISD  170 (421)
Q Consensus        99 ~~~~~~~~~g~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~---~i~lwd~~~~~  170 (421)
                      ......++..+.. .+   ..+++|+.+.    ...+.+ .+|...|.+++|+|||+.|+++ .++   .|++||+. ++
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg  213 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG----YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NG  213 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS----CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TC
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC----CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC-CC
Confidence            0012222222221 12   5789999864    345556 6789999999999999999997 664   99999998 44


Q ss_pred             eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE-EEEcCC--eEEEEECCcccccccchhhhccccccCCCcccccccc
Q 014644          171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  247 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  247 (421)
                      +....        ..|...+.+++|+|+| +.|+ +++.++  .|++||+.+++..     .+..             |.
T Consensus       214 ~~~~l--------~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~  266 (415)
T 2hqs_A          214 AVRQV--------ASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR-----QVTD-------------GR  266 (415)
T ss_dssp             CEEEE--------ECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-----ECCC-------------CS
T ss_pred             cEEEe--------ecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-----eCcC-------------CC
Confidence            44432        4567789999999999 7666 666655  4999999876531     2222             35


Q ss_pred             cceeEEEEcCCCCEEEEecC--C--eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          248 ASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                      ..+..++|+|||++|+++++  +  .|++||+.+ ++. ..+..+...+               .+++|+|+|++|++++
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~~-~~l~~~~~~~---------------~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GAP-QRITWEGSQN---------------QDADVSSDGKFMVMVS  329 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SCC-EECCCSSSEE---------------EEEEECTTSSEEEEEE
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CCE-EEEecCCCcc---------------cCeEECCCCCEEEEEE
Confidence            67899999999999887653  4  677888875 443 3333333322               6899999999999887


Q ss_pred             CC---CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc----ccCC-CCCccccccccccC
Q 014644          324 YS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA----HENS-SSGHHELSYNLSSK  395 (421)
Q Consensus       324 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~----~iw~-~~~~~~~~~~~~~~  395 (421)
                      .+   ..|++||+.++. . ..+..+. .+..+.|+|+  ++     .|+.++.++.    .+|+ .++....+..+...
T Consensus       330 ~~~g~~~i~~~d~~~~~-~-~~l~~~~-~~~~~~~spd--g~-----~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~  399 (415)
T 2hqs_A          330 SNGGQQHIAKQDLATGG-V-QVLSSTF-LDETPSLAPN--GT-----MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ  399 (415)
T ss_dssp             ECSSCEEEEEEETTTCC-E-EECCCSS-SCEEEEECTT--SS-----EEEEEEEETTEEEEEEEETTSCCEEECCCSSSE
T ss_pred             CcCCceEEEEEECCCCC-E-EEecCCC-CcCCeEEcCC--CC-----EEEEEEcCCCccEEEEEECCCCcEEEeeCCCCC
Confidence            64   589999999763 2 4455554 8889999998  44     7777776663    4553 34556666788899


Q ss_pred             eEEEEEccCCC
Q 014644          396 LLHLAWHPTTN  406 (421)
Q Consensus       396 v~~~~~spd~~  406 (421)
                      |.+++|+|.-.
T Consensus       400 v~~~~~~~~~~  410 (415)
T 2hqs_A          400 VKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEECCCCC
T ss_pred             CcCCccccccc
Confidence            99999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=7.9e-25  Score=218.32  Aligned_cols=335  Identities=9%  Similarity=0.029  Sum_probs=224.9

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeC-CC-----cEEEeecCCceeEEeeecCCCCC---ccccc-------cc-ccccceee
Q 014644           33 EEKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPF---VSSEN-------TL-LAEKNFMN   95 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~-d~-----~v~lwd~~~~~~~~~~~~~~~~~---v~~~~-------~~-~~~~~~~~   95 (421)
                      ...|.+++|  +|||++|++++. |+     +|++||+.+++...+...+...+   ..+..       .. .....+..
T Consensus        36 ~~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            457899999  899999999998 88     99999999987554443221110   00000       00 00022556


Q ss_pred             ccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeee
Q 014644           96 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI  175 (421)
Q Consensus        96 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~  175 (421)
                      +.+++++.+++.++.   ..+.+|++...... ..+.+ ..|...+..++|+|||++|+.+.++.|++||+. +++..++
T Consensus       114 ~~~SpDg~~l~~~~~---~~i~~~d~~~~~~~-~~~~l-~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~~  187 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG---GELYLYDLKQEGKA-AVRQL-THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQL  187 (741)
T ss_dssp             CEECTTSSEEEEEET---TEEEEEESSSCSTT-SCCBC-CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEEC
T ss_pred             eEECCCCCEEEEEeC---CcEEEEECCCCCcc-eEEEc-ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEEe
Confidence            677777777766553   67889998764100 33445 678888999999999999999866799999998 4544433


Q ss_pred             eecCCCCCCccCC----------------CeeEEEEecCCCCeEEEEEcCC-----------------------------
Q 014644          176 VDMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG-----------------------------  210 (421)
Q Consensus       176 ~~~~~~~~~~~~~----------------~v~~~~~~p~~~~~l~s~~~d~-----------------------------  210 (421)
                      .       ..+..                .+.+++|+||| +.|++++.|+                             
T Consensus       188 ~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          188 T-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             C-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             c-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            2       11222                24789999999 8888887765                             


Q ss_pred             ----eEEEEECCc-ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-----C-CeEEEEECCCCC
Q 014644          211 ----FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----Y-MNLKLWDIRMDS  279 (421)
Q Consensus       211 ----~v~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~-~~i~i~d~~~~~  279 (421)
                          .|.+||+.+ ++..    .....           ..+...+..++| |||++|+.+.     . ..|++||+.+ +
T Consensus       260 ~~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g  322 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-N  322 (741)
T ss_dssp             CCEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-C
T ss_pred             CCeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-C
Confidence                788888877 6432    11100           123568899999 9999998642     2 6799999986 6


Q ss_pred             cceeEEeeccCc-ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccce-eeec
Q 014644          280 TPVATFKIHEHL-RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQA  357 (421)
Q Consensus       280 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~  357 (421)
                      +....+..+... +.            .+.+++|+|||+++++++.||.++||.++..+. ...+..+...+..+ .|++
T Consensus       323 ~~~~~~~~~~~~~~~------------~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          323 QQRVLAHETSPTWVP------------LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             CEEEEEEEECSSCCC------------CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred             ceEEEEEcCCCCcCC------------cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence            666665554421 00            014789999999999999999888888764334 67777787777776 4888


Q ss_pred             CCcccccccceeeeecccC--c-ccCC--C-CCccccccccccCeEEEEEccCCCeEEEecC-----CceEEEe
Q 014644          358 APRARRSSLSNLTRGLYRQ--A-HENS--S-SGHHELSYNLSSKLLHLAWHPTTNLIACANG-----NSLFFHY  420 (421)
Q Consensus       358 ~~~~~~~~~~~l~~g~~d~--~-~iw~--~-~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-----~~~~i~~  420 (421)
                      +  ++    ..+++++.++  . ++|.  . ++....+.. ...+..++|+||++.|+....     ..+++++
T Consensus       390 d--g~----~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          390 K--AG----LAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             T--TT----EEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             C--CC----EEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence            8  33    1335556565  5 8992  2 332333333 567889999999999887652     2466664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.4e-23  Score=200.17  Aligned_cols=319  Identities=8%  Similarity=-0.002  Sum_probs=225.6

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEee--
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV--  121 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--  121 (421)
                      ++++.++++++.|++|.+||..++++.......+              .+..+.+++++.++..++.+  ..+.+||+  
T Consensus       146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~--------------~~~~v~~spdg~~l~v~~~d--~~V~v~D~~~  209 (543)
T 1nir_A          146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--------------AVHISRMSASGRYLLVIGRD--ARIDMIDLWA  209 (543)
T ss_dssp             CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST--------------TEEEEEECTTSCEEEEEETT--SEEEEEETTS
T ss_pred             CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc--------------ccceEEECCCCCEEEEECCC--CeEEEEECcC
Confidence            6788899999999999999999887432222111              14456667788777777664  78999999  


Q ss_pred             cccceeeeeeeecCCCCcceEEEeecC----CCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCC---ccCC-Cee
Q 014644          122 GNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-VIT  191 (421)
Q Consensus       122 ~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~---~~~~-~v~  191 (421)
                      .+.   +++..+ . +...+..++|+|    ||++|+++  .+++|.+||.. ..++++.+........   -|.. .+.
T Consensus       210 ~t~---~~~~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~  283 (543)
T 1nir_A          210 KEP---TKVAEI-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVA  283 (543)
T ss_dssp             SSC---EEEEEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             CCC---cEEEEE-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceE
Confidence            665   677777 4 455689999999    99999987  58999999998 5666666532110011   1333 789


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-Ce
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MN  269 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~  269 (421)
                      ++.++|+++.++++...++.|.+||+.+.+...  ...+..              ...+..+.|+|+|++++++ .. ++
T Consensus       284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~~--------------~~~~~~~~~spdg~~l~va~~~~~~  347 (543)
T 1nir_A          284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIGA--------------APFLHDGGWDSSHRYFMTAANNSNK  347 (543)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEEC--------------CSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEecc--------------CcCccCceECCCCCEEEEEecCCCe
Confidence            999999885677777889999999998754321  011111              3457789999999987765 44 89


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEE-EcCC-CCEEEEee-CCCeEEEEecCCC------CCce
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG------SAGG  340 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sp~-~~~l~~~s-~dg~i~iwd~~~~------~~~~  340 (421)
                      |.+||+.+ ++++..+.....+-+.             .... ++|+ +..+++++ .|++|.+||+.+.      .+..
T Consensus       348 v~v~D~~t-g~l~~~i~~g~~ph~g-------------~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v  413 (543)
T 1nir_A          348 VAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  413 (543)
T ss_dssp             EEEEETTT-TEEEEEEECSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEEECCC-CeEEEeeccCCCCCCC-------------CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence            99999987 8888777642211000             1222 4677 66667765 5899999999882      2667


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeec-------ccCc-ccCCC--CCccccc---------cccccCeEEEEE
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-------YRQA-HENSS--SGHHELS---------YNLSSKLLHLAW  401 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------~d~~-~iw~~--~~~~~~~---------~~~~~~v~~~~~  401 (421)
                      .++.+|...+..+.++|+  ++     .|+++.       .++. .+|+.  .+.....         ..+...+..+.|
T Consensus       414 ~~l~~~g~~~~~v~~~pd--g~-----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          414 AELQGQGGGSLFIKTHPK--SS-----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             EEEECSCSCCCCEECCTT--CC-----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             EEEEcCCCCceEEEcCCC--CC-----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence            889999988899999998  44     787776       2455 88833  2222121         244678999999


Q ss_pred             ccCCCeEEEec------CCceEEEeC
Q 014644          402 HPTTNLIACAN------GNSLFFHYA  421 (421)
Q Consensus       402 spd~~~la~~~------~~~~~i~~~  421 (421)
                      +|||+.|.++.      ++.|.+|+.
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            99999988662      477999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.5e-23  Score=195.59  Aligned_cols=237  Identities=10%  Similarity=0.032  Sum_probs=178.9

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ..+.+++|+|++.+++++ .+++|++||+. .++....+.  ...+.+|...|.+++|+|++ .++++++.|+.|++||+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSP--PEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECC--CHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecC--cccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEEC
Confidence            446699999977788888 89999999998 455544321  11235788899999999998 99999999999999999


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-EecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      ++++..    ..+..             |...+.+++|+|++++++ ++.. +.|++||+++ ++.+..+..+...    
T Consensus       199 ~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~----  256 (433)
T 3bws_A          199 KTLAYK----ATVDL-------------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDKIGLP----  256 (433)
T ss_dssp             TTCCEE----EEEEC-------------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCCCSEE----
T ss_pred             CCceEE----EEEcC-------------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecCCCCc----
Confidence            876543    22223             366899999999999885 4544 9999999986 7776666554332    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEee--------CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccc
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGS--------YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                                  .+++|+|++++|++++        .||.|++||+.++ .... ...|...+..++|+|+  ++    .
T Consensus       257 ------------~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~--g~----~  316 (433)
T 3bws_A          257 ------------RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-KLID-TIGPPGNKRHIVSGNT--EN----K  316 (433)
T ss_dssp             ------------EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEEE-EEEEEECEEEEEECSS--TT----E
T ss_pred             ------------eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-cEEe-eccCCCCcceEEECCC--CC----E
Confidence                        6899999999999888        5889999999876 3333 3345567788899887  32    2


Q ss_pred             eeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEecC----------------CceEEEeC
Q 014644          368 NLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANG----------------NSLFFHYA  421 (421)
Q Consensus       368 ~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~~----------------~~~~i~~~  421 (421)
                      .+++++.++. ++|+.. ........+...+..++|+|+++.|++++.                +.+++|+.
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            5677788888 999432 333344456778999999999999888874                27999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.8e-23  Score=207.91  Aligned_cols=333  Identities=10%  Similarity=0.038  Sum_probs=204.0

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...+.+++|  +|+|+++++ +.||+|++||+.+++...+...+ ...         ...+....+++++.+++.+..+.
T Consensus        16 ~~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~-~~~---------~~~v~~~~~SpDg~~l~~~~~~~   82 (723)
T 1xfd_A           16 KIHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-KIE---------SLRAIRYEISPDREYALFSYNVE   82 (723)
T ss_dssp             CCCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-TTT---------TTTCSEEEECTTSSEEEEEESCC
T ss_pred             cccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc-ccc---------ccccceEEECCCCCEEEEEecCc
Confidence            345678899  789997766 78999999999998754443321 110         01245556666776666554421


Q ss_pred             -------ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCC--C
Q 014644          113 -------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--M  183 (421)
Q Consensus       113 -------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~--~  183 (421)
                             ...+.+|++.++.. +.+... .+|...+..++|||||+.|+.+.++.|++||+. +++..++.......  +
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~  159 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGDP-QSLDPP-EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIY  159 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCCC-EECCCT-TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEE
T ss_pred             cceeecceeeEEEEECCCCce-EeccCC-ccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEecCCCCCceE
Confidence                   24688999887621 112222 345556899999999999999856899999998 45444443100000  0


Q ss_pred             CccC---------CCeeEEEEecCCCCeEEEEEcCC----------------------------------eEEEEECCcc
Q 014644          184 DDLT---------EVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQS  220 (421)
Q Consensus       184 ~~~~---------~~v~~~~~~p~~~~~l~s~~~d~----------------------------------~v~iwd~~~~  220 (421)
                      .++.         ..+.+++|+||| +.|++++.|+                                  .|++||+.++
T Consensus       160 ~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~  238 (723)
T 1xfd_A          160 NGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (723)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             CcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence            0010         123789999999 8888887553                                  6888888765


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec----C-CeEEEEECCCCCcceeEEeec-cCcccc
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPK  294 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~-~~i~i~d~~~~~~~~~~~~~~-~~~~~~  294 (421)
                      +..    ..+..+       ..+..+...+..++|+|||++|++..    . ..|++||+.+ ++....+..+ ...+..
T Consensus       239 ~~~----~~l~~~-------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~  306 (723)
T 1xfd_A          239 THD----LEMMPP-------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHR  306 (723)
T ss_dssp             CCC----EECCCC-------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCC
T ss_pred             cee----EEeeCC-------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEec
Confidence            421    111110       00112356789999999999887642    2 5799999986 6665555433 222100


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEE--eeCCC------eEEEEecCCCCC--ceeEEecCCCCcc-ceeeecCCcccc
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFSHGVGSA--GGITVEAGKNENR-KPILQAAPRARR  363 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~--~s~dg------~i~iwd~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~  363 (421)
                      .           ...++|+|||+.|+.  +..++      .|++||+..++.  ....+..+...+. .+.|+|+  ++ 
T Consensus       307 ~-----------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd--g~-  372 (723)
T 1xfd_A          307 Q-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK--GN-  372 (723)
T ss_dssp             C-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT--TT-
T ss_pred             c-----------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC--CC-
Confidence            0           026899999997775  44667      577777323323  1333443333333 3689988  44 


Q ss_pred             cccceeeeeccc---Cc-ccCC--CCC--ccccccc---cccCeEEEEEccCCCeEEEec
Q 014644          364 SSLSNLTRGLYR---QA-HENS--SSG--HHELSYN---LSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       364 ~~~~~l~~g~~d---~~-~iw~--~~~--~~~~~~~---~~~~v~~~~~spd~~~la~~~  412 (421)
                          .|+..+.+   +. ++|.  ..+  ....+..   +...+..++|+|||+.|+...
T Consensus       373 ----~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          373 ----KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             ----EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             ----EEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence                56544443   55 8992  222  2222222   466788999999999988764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.9e-23  Score=207.13  Aligned_cols=333  Identities=7%  Similarity=0.000  Sum_probs=207.6

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee--EEeeecCCCCCccccccccc-------ccceeeccCCCCceee
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLA-------EKNFMNEHNPPSFAHG  105 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~  105 (421)
                      .+..+.|.    ++.+++++.|+ | +||+.+++.  ..+.......    ..+...       ...+.++.++++...+
T Consensus        27 ~~~~~~w~----g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~----~~l~~~~~~~~~~~~~v~~~~~spd~~~~   96 (706)
T 2z3z_A           27 YVVGLQWM----GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLN----ALMPEGCKFQTTDAFPSFRTLDAGRGLVV   96 (706)
T ss_dssp             -CTTCEEE----TTEEEEEETTE-E-EEEC-------CEEEEHHHHH----TTC-----------CCCEEEEETTTTEEE
T ss_pred             cCCCCcCc----CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhh----hhccchhccccccccCceeEEECCCCeEE
Confidence            35668883    66788888888 8 999998875  4443311000    000000       1235556666663333


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCC----ceeeeeeecCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPS  181 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~----~~~~~~~~~~~~  181 (421)
                      ...    ++.+.+|+..+.   ++.+..  .+...+.+++|+|||+.|+++.++.|++|++...    ++..+.......
T Consensus        97 ~~~----~~~i~~~d~~~~---~~~~l~--~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A           97 LFT----QGGLVGFDMLAR---KVTYLF--DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             EEE----TTEEEEEETTTT---EEEEEE--CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             EEE----CCEEEEEECCCC---ceEEcc--CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            221    367899998776   554443  5667789999999999999998899999999831    443332210000


Q ss_pred             -------CCCccCCCeeEEEEecCCCCeEEEEE---------------------------------cCCeEEEEECCccc
Q 014644          182 -------NMDDLTEVITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSA  221 (421)
Q Consensus       182 -------~~~~~~~~v~~~~~~p~~~~~l~s~~---------------------------------~d~~v~iwd~~~~~  221 (421)
                             ....+...+.++.|+||| +.|++++                                 .+..|++||+.+++
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             CeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence                   000011225889999999 8898887                                 34679999998765


Q ss_pred             ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CC-----eEEEEECCCCCcceeEEe-ecc-Cccc
Q 014644          222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFK-IHE-HLRP  293 (421)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-----~i~i~d~~~~~~~~~~~~-~~~-~~~~  293 (421)
                      ..    .....           ..+...+..++|+|||++|++++ ++     .|++||+.+ ++....+. ... ....
T Consensus       247 ~~----~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          247 TV----YLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             EE----ECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCC
T ss_pred             eE----eeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeEC
Confidence            32    11111           12356789999999999888753 23     899999986 53333332 211 1110


Q ss_pred             ccccccCCCcceeeeEEEEcC--CCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccc-eeeecCCcccccccceee
Q 014644          294 KLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLT  370 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  370 (421)
                                  .+.+++|+|  ||+++++++.||.++||.++........+..+...+.. +.|+|+  ++    .+++
T Consensus       311 ------------~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd--g~----~l~~  372 (706)
T 2z3z_A          311 ------------PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK--GT----RLYF  372 (706)
T ss_dssp             ------------CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTT--SS----EEEE
T ss_pred             ------------ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC--CC----EEEE
Confidence                        014689999  99999999999999999887433556677777777766 789888  33    1334


Q ss_pred             eecccC--c-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-C----CceEEEeC
Q 014644          371 RGLYRQ--A-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-G----NSLFFHYA  421 (421)
Q Consensus       371 ~g~~d~--~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~----~~~~i~~~  421 (421)
                      ++..++  . .+|  +..........+...+..++|+|||++|+.++ +    ..+++|++
T Consensus       373 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          373 ESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            455554  2 666  32222233334667799999999999988764 2    34889863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1e-21  Score=181.75  Aligned_cols=245  Identities=13%  Similarity=0.073  Sum_probs=180.4

Q ss_pred             CCeEEEEeCC------CcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc-ccceeEE
Q 014644           47 GSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-NMATKIA  119 (421)
Q Consensus        47 ~~~l~t~s~d------~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~  119 (421)
                      +..++.++.+      ++|++||++.+..+.+..  +..            .+.++.+++++..++.++.+. ...+.+|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~--~~~------------~v~~~~~Spdg~~la~~s~~~~~~~i~~~  208 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR--SPQ------------PLMSPAWSPDGSKLAYVTFESGRSALVIQ  208 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE--ESS------------CEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC--CCC------------cceeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence            5666666654      799999998665444433  222            466677777887777777643 3488999


Q ss_pred             eecccceeeeeeeecCCCCcceEEEeecCCCCEEE-EE-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE
Q 014644          120 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  195 (421)
Q Consensus       120 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  195 (421)
                      ++.++   ++.+ + ..|...+.+++|+|||+.|+ ++ .++  .|++||+. .++...        +..|...+.+++|
T Consensus       209 d~~tg---~~~~-l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~--------l~~~~~~~~~~~~  274 (415)
T 2hqs_A          209 TLANG---AVRQ-V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDGRSNNTEPTW  274 (415)
T ss_dssp             ETTTC---CEEE-E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------CCCCSSCEEEEEE
T ss_pred             ECCCC---cEEE-e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEe--------CcCCCCcccceEE
Confidence            99876   5543 3 57788999999999999888 55 555  49999998 444332        2567788999999


Q ss_pred             ecCCCCeEEEEEc-CC--eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C---C
Q 014644          196 HPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---M  268 (421)
Q Consensus       196 ~p~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~  268 (421)
                      +|+| +.|++++. ++  .|.+||+.++...     .+..             +...+..++|+|||++|++++ +   .
T Consensus       275 spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdG~~l~~~~~~~g~~  335 (415)
T 2hqs_A          275 FPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQQ  335 (415)
T ss_dssp             CTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred             CCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EEec-------------CCCcccCeEECCCCCEEEEEECcCCce
Confidence            9999 88887775 44  6777898876421     1111             245788999999999998764 2   4


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC---eEEEEecCCCCCceeEEec
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~  345 (421)
                      .|++||+.+ ++. ..+..+. .+               .+++|+|+|++|++++.++   .|++||+..  .....+..
T Consensus       336 ~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g--~~~~~l~~  395 (415)
T 2hqs_A          336 HIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPA  395 (415)
T ss_dssp             EEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTS--CCEEECCC
T ss_pred             EEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCC--CcEEEeeC
Confidence            899999985 544 3343333 22               6899999999999888776   799999873  46778899


Q ss_pred             CCCCccceeeecC
Q 014644          346 GKNENRKPILQAA  358 (421)
Q Consensus       346 ~~~~~~~~~~~~~  358 (421)
                      |.+.+..++|+|.
T Consensus       396 ~~~~v~~~~~~~~  408 (415)
T 2hqs_A          396 TDGQVKFPAWSPY  408 (415)
T ss_dssp             SSSEEEEEEECCC
T ss_pred             CCCCCcCCccccc
Confidence            9999999999987

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=4e-23  Score=181.99  Aligned_cols=229  Identities=11%  Similarity=0.015  Sum_probs=162.0

Q ss_pred             CCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCcc-CCCeeEEEEecCCCCeEEEEE--cCCeE
Q 014644          136 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSS--SRGFV  212 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~--~d~~v  212 (421)
                      .|...|.+++|+|++++|+++.++.|++||+...++.....       ..+ ...+.+++|+|++ +.|++++  .++..
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVD-------TGFATICNNDHGISPDG-ALYAISDKVEFGKS  110 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECC-------CTTCCCBCSCCEECTTS-SEEEEEECTTTSSC
T ss_pred             cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEec-------cccccccccceEECCCC-CEEEEEEeCCCCcc
Confidence            46778999999999999999878899999998314444332       233 4678999999999 8999888  33455


Q ss_pred             EEEE--CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE-Eec-CCeEEEEECCCCCcceeEEeec
Q 014644          213 RLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       213 ~iwd--~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~-~~~i~i~d~~~~~~~~~~~~~~  288 (421)
                      ++|.  +..+..     ..+..              ...+..++|+|++++|+ ++. ++.++||+++..+.....+..+
T Consensus       111 ~l~~~~~~~~~~-----~~~~~--------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A          111 AIYLLPSTGGTP-----RLMTK--------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             EEEEEETTCCCC-----EECCS--------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             eEEEEECCCCce-----EEeec--------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            5554  444321     22222              23478899999999887 454 4889999875434444444444


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccc
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                      ...+               .+++|+|++++|+.++ .++.+++|++.........+..|...+..+.|+|+  ++     
T Consensus       172 ~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~-----  229 (297)
T 2ojh_A          172 EGRN---------------DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS--GD-----  229 (297)
T ss_dssp             SSCE---------------EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT--SS-----
T ss_pred             CCcc---------------ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC--CC-----
Confidence            4332               6899999999888766 58999999987544566777888888888999988  43     


Q ss_pred             eeeeeccc-----------Cc-ccCCC--CCc--cccccccccCeEEEEEccCCCeEEEecC
Q 014644          368 NLTRGLYR-----------QA-HENSS--SGH--HELSYNLSSKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       368 ~l~~g~~d-----------~~-~iw~~--~~~--~~~~~~~~~~v~~~~~spd~~~la~~~~  413 (421)
                      .|+.++.+           +. .+|+.  ++.  +....++...+..++|+||++.|++++.
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            67777665           23 56632  222  2223366778999999999999998873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=1.2e-21  Score=202.11  Aligned_cols=319  Identities=10%  Similarity=0.061  Sum_probs=211.9

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC-CCceeeeecccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTEN  113 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~  113 (421)
                      .+..+.|  +|+|++++.+ .++.|.+||+....+..+..   ........+......+..+.++ +++..++.+.   .
T Consensus       246 ~~~~~~~--SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~---~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~  316 (1045)
T 1k32_A          246 DYYPRHL--NTDGRRILFS-KGGSIYIFNPDTEKIEKIEI---GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---R  316 (1045)
T ss_dssp             SSCEEEE--EESSSCEEEE-ETTEEEEECTTTCCEEECCC---CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---T
T ss_pred             CcceeeE--cCCCCEEEEE-eCCEEEEecCCceEeeeecc---CcccccccccccccccceeeecCCCCCEEEEEE---c
Confidence            4667788  6889988887 48999999995544432221   1100000111112234455555 5655555544   3


Q ss_pred             cceeEEeecccceeeeeeeecCCCCc-ceEEEeecCCCCEEEEE-cCCcEE-EEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~-~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      ..+.+|+....   .... + ..|.. .+..++|+ ||+.|+++ .+..+. +|++. .++... +       .+|...+
T Consensus       317 ~~i~~~~~~~~---~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~-l-------~~~~~~~  381 (1045)
T 1k32_A          317 GQAFIQDVSGT---YVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK-F-------EENLGNV  381 (1045)
T ss_dssp             TEEEEECTTSS---BEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE-C-------CCCCCSE
T ss_pred             CEEEEEcCCCC---ceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE-e-------cCCccce
Confidence            45677777654   3333 4 56777 89999999 99999998 877888 88987 333322 1       3677889


Q ss_pred             eEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC---
Q 014644          191 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---  267 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---  267 (421)
                      .+++|+|+| +.|++++.++.|++||+.+++..    .....             |...+..++|+|||++|++++.   
T Consensus       382 ~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          382 FAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             EEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             eeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEEecCcc
Confidence            999999999 99999999999999999887543    22223             3667899999999999987643   


Q ss_pred             --------CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC--
Q 014644          268 --------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--  337 (421)
Q Consensus       268 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~--  337 (421)
                              +.|++||+.+ ++ ...+..+....               ..++|+|||++|++++.++...+|+.....  
T Consensus       444 ~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~  506 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  506 (1045)
T ss_dssp             STTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             ccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchhccccc
Confidence                    3899999985 55 45555554432               678999999999999987777666643210  


Q ss_pred             ----------------------------------------CceeEEecCCCCccceeeecCCcccccccceeee------
Q 014644          338 ----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR------  371 (421)
Q Consensus       338 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  371 (421)
                                                              .....+..|...+..+.++++  +.     .+++      
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d--g~-----~~~~~~~~g~  579 (1045)
T 1k32_A          507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES--SI-----LIYSVPVHGE  579 (1045)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS--EE-----EEEECCCCCS
T ss_pred             cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCC--Ce-----EEEEecccCc
Confidence                                                    012233345566667777776  33     4553      


Q ss_pred             -----ecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          372 -----GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       372 -----g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                           .+.+.. .+|  +.........  ...+..++|||||+.|++++.+.+++|++
T Consensus       580 ~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~v~~~~~S~DG~~l~~~~~~~i~~~d~  635 (1045)
T 1k32_A          580 FAAYYQGAPEKGVLLKYDVKTRKVTEV--KNNLTDLRLSADRKTVMVRKDDGKIYTFP  635 (1045)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCEEEE--EEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ccccccccCCCceEEEEECCCCcEEEe--ecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence                 122233 555  2222111111  16688999999999999999889999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=2.6e-21  Score=199.57  Aligned_cols=344  Identities=9%  Similarity=-0.009  Sum_probs=212.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCC------CcEEEeecCCceeEEeeecCCCCCc-------ccccccccccceeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFV-------SSENTLLAEKNFMNE   96 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d------~~v~lwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~   96 (421)
                      .+|...|.+++|  +|||++||.++.+      ..|++|++.+++.+.+..  +...+       ..++|++... ++..
T Consensus        49 t~~~~~v~~~~~--SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~--~~~~~~~~~~~~~~~~~SpDg~-ll~~  123 (1045)
T 1k32_A           49 VSNLGVINNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY--FSGKSTGRRMFTDVAGFDPDGN-LIIS  123 (1045)
T ss_dssp             ECSSSEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC--CCEEEETTEECSEEEEECTTCC-EEEE
T ss_pred             eeCCCcccCeEE--CCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc--CCCcccccccccccccCCCCCE-EEEE
Confidence            468889999999  7999999988654      489999999887554432  44444       5666665544 3322


Q ss_pred             cCCC------Cceeeee--ccc-c---------------------------------cccceeEEeecccceeeeeeeec
Q 014644           97 HNPP------SFAHGYH--LEW-T---------------------------------ENMATKIANVGNSVHARCQKVYP  134 (421)
Q Consensus        97 ~~~~------~~~~~~~--g~~-~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~  134 (421)
                      ....      ..-+..+  +.. .                                 .....++|.....   ...+.+ 
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~---~~~~~l-  199 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS---GAFKKI-  199 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET---TEEEEE-
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC---CCeEEC-
Confidence            2110      0011110  000 0                                 0112334432222   122334 


Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      .+|...+.++.|+++ .+++++ .|++++||.++..+...+.+       ..|. .+..++|+|+| +.|+++ .++.|.
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-------~~~~-~~~~~~~SpDG-~~la~~-~~~~i~  268 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-------TSFT-DYYPRHLNTDG-RRILFS-KGGSIY  268 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-------CCCC-SSCEEEEEESS-SCEEEE-ETTEEE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-------cCCC-CcceeeEcCCC-CEEEEE-eCCEEE
Confidence            688999999999988 566677 88999999876433333222       2232 24455666666 555554 366666


Q ss_pred             EEECCccccc--cc--------------chhhhccc-ccc-----------------CCCccccccccc-ceeEEEEcCC
Q 014644          214 LVDMRQSALC--DH--------------SARILRDA-AES-----------------HGSKSFFTEIIA-SISDIKFAND  258 (421)
Q Consensus       214 iwd~~~~~~~--~~--------------~~~~~~~h-~~~-----------------~~~~~~~~~~~~-~v~~~~~s~~  258 (421)
                      +||+......  ..              ....+.-+ ..+                 ......+..+.. .+..++|+ |
T Consensus       269 ~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          269 IFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             EECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             EecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            6665221110  00              00000000 000                 000011233445 78899999 9


Q ss_pred             CCEEEEecC-CeEE-EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          259 GQHLLSRDY-MNLK-LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       259 ~~~l~~~~~-~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |+.|+.+++ ..+. +||+.. ++. ..+..+...+               ..++|+|||++|++++.++.|++||+.++
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~-~~~-~~l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRT-GKA-EKFEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTT-CCE-EECCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CCeEEEEECCCceEEEEECCC-CCc-eEecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence            999998876 7788 899874 443 3333443322               68999999999999999999999999987


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccC----------c-ccCCC-CCccccccccccCeEEEEEccC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ----------A-HENSS-SGHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~----------~-~iw~~-~~~~~~~~~~~~~v~~~~~spd  404 (421)
                       .....+.+|...+..++|+|+  ++     .|+.++.++          . ++|+. ++.......+...+..++|+||
T Consensus       411 -~~~~~~~~~~~~v~~~~~SpD--G~-----~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          411 -KPTVIERSREAMITDFTISDN--SR-----FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  482 (1045)
T ss_dssp             -CEEEEEECSSSCCCCEEECTT--SC-----EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             -ceEEeccCCCCCccceEECCC--CC-----eEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence             556666789999999999999  44     777776543          4 78833 2335556677778899999999


Q ss_pred             CCeEEEecC-CceEEE
Q 014644          405 TNLIACANG-NSLFFH  419 (421)
Q Consensus       405 ~~~la~~~~-~~~~i~  419 (421)
                      |+.|+.++. +....|
T Consensus       483 G~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          483 SKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             SCEEEEEESCCCCCEE
T ss_pred             CCEEEEEecccCCcCc
Confidence            999998874 334444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=1.1e-20  Score=169.51  Aligned_cols=231  Identities=8%  Similarity=0.018  Sum_probs=154.8

Q ss_pred             CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecccc
Q 014644           46 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  125 (421)
Q Consensus        46 ~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  125 (421)
                      ....+++++.+++|++||..+++........ ..            .. .+.+++++.++...... ...+.+|+..+. 
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~------------~~-~~~~s~dg~~l~~~~~~-~~~i~~~d~~~~-   72 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG-YD------------FV-DTAITSDCSNVVVTSDF-CQTLVQIETQLE-   72 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECC-CC------------EE-EEEECSSSCEEEEEEST-TCEEEEEECSSS-
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEcc-CC------------cc-eEEEcCCCCEEEEEeCC-CCeEEEEECCCC-
Confidence            3455888889999999999988854433322 11            22 44555555544333321 336788888776 


Q ss_pred             eeee-eeeecCCCCcceEEEeecCCCCEEEEE-cC-C--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC
Q 014644          126 HARC-QKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  200 (421)
Q Consensus       126 ~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d-~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  200 (421)
                        +. .+.+ ..+.....+++|+|++++|+++ .+ +  .|.+||+. .++....+       . ......+++|+|++ 
T Consensus        73 --~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~~~~~~spdg-  139 (331)
T 3u4y_A           73 --PPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDAVGIAISPNG-  139 (331)
T ss_dssp             --SCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTEEEEEECTTS-
T ss_pred             --ceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCccceEECCCC-
Confidence              44 4444 4555555559999999999976 44 3  89999998 55555544       2 23446899999999 


Q ss_pred             CeEE-EEEcCCe-EEEEECCcccccccc-hhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEEC
Q 014644          201 NLLA-YSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDI  275 (421)
Q Consensus       201 ~~l~-s~~~d~~-v~iwd~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~  275 (421)
                      +.++ +...++. |.+|++......... ...+.              ....+..++|+|+|++++.+ .. +.|++||+
T Consensus       140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--------------GGTRPFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--------------SSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceEEEEEECCCCcEeecCCcccc--------------CCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            6454 4456577 999998854321100 01111              13457899999999976654 44 89999999


Q ss_pred             CCCCcc---eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          276 RMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       276 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      .+ ++.   +..+..+...                ..++|+|+|++|++++ .++.|.+||+.++
T Consensus       206 ~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          206 QN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            86 666   6666544332                5899999999776654 5788999999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.5e-21  Score=172.80  Aligned_cols=243  Identities=9%  Similarity=-0.000  Sum_probs=153.8

Q ss_pred             CCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeE
Q 014644          136 AHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV  212 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v  212 (421)
                      .|...+.+++|+|++++|+++ . ++.|++|+++........+.    .+..+ ..+.+++|+|++ +.|++++ .++.|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~~i  108 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA----ESALP-GSLTHISTDHQG-QFVFVGSYNAGNV  108 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE----EEECS-SCCSEEEECTTS-SEEEEEETTTTEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc----ccccC-CCCcEEEEcCCC-CEEEEEecCCCeE
Confidence            355678889999999988887 5 49999999972221111110    11222 378899999999 7776665 58999


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCccee----EEe
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA----TFK  286 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~----~~~  286 (421)
                      .+||+..+.. ......+..              ...+.+++|+|+|+++++++ . +.|++||+.+.++...    .+.
T Consensus       109 ~~~d~~~~~~-~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A          109 SVTRLEDGLP-VGVVDVVEG--------------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             EEEEEETTEE-EEEEEEECC--------------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             EEEECCCCcc-ccccccccC--------------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence            9999952211 111122222              24588999999999888764 4 9999999975343322    122


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCC-Cc--eeEEecC------CCCccceeee
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGS-AG--GITVEAG------KNENRKPILQ  356 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~-~~--~~~~~~~------~~~~~~~~~~  356 (421)
                      .+...              .+..++|+|+++++++++ .++.|++|++.... ..  ...+...      ...+..++|+
T Consensus       174 ~~~~~--------------~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          174 TVEGA--------------GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             CSTTC--------------CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCCC--------------CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence            22111              126799999999776554 78999999996421 21  1122211      1233468888


Q ss_pred             cCCcccccccceee-eecccCc-ccCCCC---Cc--cccccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          357 AAPRARRSSLSNLT-RGLYRQA-HENSSS---GH--HELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       357 ~~~~~~~~~~~~l~-~g~~d~~-~iw~~~---~~--~~~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      |+  ++     .|+ ++..++. .+|+..   +.  ..........+..++|+|++++|++++  ++.+.+|.
T Consensus       240 ~d--g~-----~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          240 PD--GR-----HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             TT--SS-----EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CC--CC-----EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            87  33     444 5656777 999332   11  111222233488999999999888877  46799984

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=5.1e-20  Score=166.66  Aligned_cols=247  Identities=8%  Similarity=-0.033  Sum_probs=169.5

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeC-------CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCC
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTN-------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  101 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~-------d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  101 (421)
                      .......+..++|  +++++++++++.       ++.|.+||..+++.......  ......            +.++++
T Consensus        36 ~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~------------~~~s~d   99 (353)
T 3vgz_A           36 RKAVGKGAYEMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFG------------ATINNT   99 (353)
T ss_dssp             EEEEESSEEEEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCS------------EEEETT
T ss_pred             hhhhccCccceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcce------------EEECCC
Confidence            3445677889999  688888887774       56899999998873332221  121222            233333


Q ss_pred             ceeeeecccccccceeEEeecccceeeeeeeecCCCCc---------ceEEEeecCCCCEEEEE---cCCcEEEEeCCCC
Q 014644          102 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---------NINSISNNSDCETFVSA---DDLRINLWNLEIS  169 (421)
Q Consensus       102 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~  169 (421)
                      +..+..... ....+.+|+..+.   +.+..+ ..+..         .+.+++|+|++++++++   .++.|.+||.. .
T Consensus       100 g~~l~v~~~-~~~~v~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~  173 (353)
T 3vgz_A          100 TQTLWFGNT-VNSAVTAIDAKTG---EVKGRL-VLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-N  173 (353)
T ss_dssp             TTEEEEEET-TTTEEEEEETTTC---CEEEEE-ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-T
T ss_pred             CCEEEEEec-CCCEEEEEeCCCC---eeEEEE-ecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-C
Confidence            332222111 1346788888776   555555 23221         27889999999987775   37889999998 5


Q ss_pred             ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccc
Q 014644          170 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  249 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  249 (421)
                      .+....+       ..+...+.+++|+|++ +.+++++.++.|.+||+.+++..    ..+...         ..++...
T Consensus       174 ~~~~~~~-------~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~---------~~~~~~~  232 (353)
T 3vgz_A          174 IKLKTAI-------QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLL---------DDGKEHF  232 (353)
T ss_dssp             TEEEEEE-------CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECC---------CSSSCCC
T ss_pred             CceEEEe-------cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcC---------CCCCCcc
Confidence            5555544       3244557889999999 88999999999999999887643    221110         0112446


Q ss_pred             eeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCC
Q 014644          250 ISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSN  326 (421)
Q Consensus       250 v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg  326 (421)
                      +..++|+|+|++++.++ . +.|.+||+.+ ++.+..+.....                 ..++|+|+|++++++. .++
T Consensus       233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          233 FINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAG  294 (353)
T ss_dssp             EEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTT
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCC
Confidence            78899999999877653 4 8999999986 777777765432                 4799999999766555 689


Q ss_pred             eEEEEecCCC
Q 014644          327 LLRIFSHGVG  336 (421)
Q Consensus       327 ~i~iwd~~~~  336 (421)
                      .|.+||+.++
T Consensus       295 ~v~~~d~~~~  304 (353)
T 3vgz_A          295 KVSVIDAKSY  304 (353)
T ss_dssp             EEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            9999999876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=3e-20  Score=177.27  Aligned_cols=274  Identities=8%  Similarity=-0.020  Sum_probs=186.5

Q ss_pred             CCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeC--CCCceeee
Q 014644           98 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL--EISDQCFN  174 (421)
Q Consensus        98 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~--~~~~~~~~  174 (421)
                      ++++...+..+..  ++.+.+||..+.   +++..+..++.  +..++|+|||++|+++ .|++|++||+  . ..+.+.
T Consensus       145 ~~p~~~~~vs~~~--d~~V~v~D~~t~---~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~  216 (543)
T 1nir_A          145 LDLPNLFSVTLRD--AGQIALVDGDSK---KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVA  216 (543)
T ss_dssp             CCGGGEEEEEEGG--GTEEEEEETTTC---CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEE
T ss_pred             cCCCCEEEEEEcC--CCeEEEEECCCc---eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEE
Confidence            3444555544433  458899998887   77888732444  8899999999999998 8899999999  5 455555


Q ss_pred             eeecCCCCCCccCCCeeEEEEec----CCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCccccccc-cc
Q 014644          175 IVDMKPSNMDDLTEVITSAEFHP----IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IA  248 (421)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~  248 (421)
                      .+       . +...+.+++|+|    +| +++++++ .+++|.+||..+++..    +.+..+......   ...| ..
T Consensus       217 ~i-------~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~----~~i~~~g~~~~~---~~~~~~~  280 (543)
T 1nir_A          217 EI-------K-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK----QIVSTRGMTVDT---QTYHPEP  280 (543)
T ss_dssp             EE-------E-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE----EEEECCEECSSS---CCEESCC
T ss_pred             EE-------e-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc----eeecccCcccCc---cccccCC
Confidence            44       2 345679999999    99 8888877 5899999999887644    222221000000   0001 23


Q ss_pred             ceeEEEEcCCCCEEEE-ecC-CeEEEEECCCCCccee--EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-
Q 014644          249 SISDIKFANDGQHLLS-RDY-MNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-  323 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~-~~~-~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-  323 (421)
                      .+..+.++|++..++. ..+ +.|.+||+.+ .+.+.  .+. +....               .+++|+|+|+++++++ 
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~-~~~l~~~~i~-~~~~~---------------~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKD-IDNLTVTSIG-AAPFL---------------HDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTT-SSSCEEEEEE-CCSSC---------------CCEEECTTSCEEEEEEG
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecC-CCcceeEEec-cCcCc---------------cCceECCCCCEEEEEec
Confidence            6889999998776654 445 9999999976 44333  332 22222               6899999999876554 


Q ss_pred             CCCeEEEEecCCCCCceeEEec----CCCCccceee-ecCCcccccccceeeeec-ccCc-ccCCC---------CCccc
Q 014644          324 YSNLLRIFSHGVGSAGGITVEA----GKNENRKPIL-QAAPRARRSSLSNLTRGL-YRQA-HENSS---------SGHHE  387 (421)
Q Consensus       324 ~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~l~~g~-~d~~-~iw~~---------~~~~~  387 (421)
                      .+++|.+||+.++ .+...+..    |.+.  ...+ .|+  +    ...++++. .++. .+|+.         .+.+.
T Consensus       344 ~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~--g~~~~~p~--~----g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~  414 (543)
T 1nir_A          344 NSNKVAVIDSKDR-RLSALVDVGKTPHPGR--GANFVHPK--Y----GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  414 (543)
T ss_dssp             GGTEEEEEETTTT-EEEEEEECSSSBCCTT--CEEEEETT--T----EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             CCCeEEEEECCCC-eEEEeeccCCCCCCCC--CcccCCCC--C----ccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence            5899999999987 55556654    3332  2333 333  1    22667765 5677 99932         23334


Q ss_pred             cccccccCeEEEEEccCCCeEEEec--------CCceEEEeC
Q 014644          388 LSYNLSSKLLHLAWHPTTNLIACAN--------GNSLFFHYA  421 (421)
Q Consensus       388 ~~~~~~~~v~~~~~spd~~~la~~~--------~~~~~i~~~  421 (421)
                      ....+...+..+++|||++.|++++        ++.|.+|+.
T Consensus       415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            4556667788999999999999987        558999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=3e-21  Score=187.03  Aligned_cols=265  Identities=8%  Similarity=-0.034  Sum_probs=185.2

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeC-CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~-d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      ..+|.+++|  ++||+.||.++. ||+++||++++++.+++                                       
T Consensus        21 ~~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------   59 (582)
T 3o4h_A           21 AVEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------   59 (582)
T ss_dssp             HSCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC---------------------------------------
T ss_pred             ccchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee---------------------------------------
Confidence            567999999  689999999887 99999999855432211                                       


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c---CCcEEEEeCCC--CceeeeeeecCCCCCCc
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~---d~~i~lwd~~~--~~~~~~~~~~~~~~~~~  185 (421)
                                           . ..+...+..++|+|| ++++++ .   +...++|.++.  .+.....        ..
T Consensus        60 ---------------------t-~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------~~  108 (582)
T 3o4h_A           60 ---------------------N-REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------EA  108 (582)
T ss_dssp             ---------------------C-SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------TT
T ss_pred             ---------------------e-cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------cC
Confidence                                 1 233357899999999 777766 4   45567766543  3332221        11


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      . ..+...+|+|++...+++.+.++.+.+||+.+++..    .+...              ..  .+++|+|||++|+++
T Consensus       109 ~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~  167 (582)
T 3o4h_A          109 V-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             S-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEE
T ss_pred             C-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEE
Confidence            1 223466888988444455555555669999876532    22222              22  789999999999964


Q ss_pred             c-C----CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC--eEEEEecCCCCC
Q 014644          266 D-Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSA  338 (421)
Q Consensus       266 ~-~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg--~i~iwd~~~~~~  338 (421)
                      + +    +.|++||+.+ ++.. .+..+...+               .+++|+|||++|+++..++  .|++||+.++ .
T Consensus       168 ~~~~~~~~~i~~~d~~~-g~~~-~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~  229 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSS-GGLR-VFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDG-S  229 (582)
T ss_dssp             EEEETTEEEEEEEETTT-CCCE-EECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTC-C
T ss_pred             EEcCCCCeEEEEEcCCC-CCce-EeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCC-c
Confidence            2 3    5799999875 5543 555555433               6899999999999888888  8999999987 3


Q ss_pred             ceeEEecCCCCcccee--------eecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEE
Q 014644          339 GGITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIA  409 (421)
Q Consensus       339 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la  409 (421)
                      .. .+.+|...+..+.        |+|+  +.     .+++++.++. ++|.. +....  .....|.+++|+ |+++++
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~~spd--g~-----~~~~~~~~g~~~l~~~-g~~~~--~~~~~v~~~~~s-dg~~l~  297 (582)
T 3o4h_A          230 VE-DLELPSKDFSSYRPTAITWLGYLPD--GR-----LAVVARREGRSAVFID-GERVE--APQGNHGRVVLW-RGKLVT  297 (582)
T ss_dssp             EE-ECCCSCSHHHHHCCSEEEEEEECTT--SC-----EEEEEEETTEEEEEET-TEEEC--CCSSEEEEEEEE-TTEEEE
T ss_pred             EE-EccCCCcChhhhhhccccceeEcCC--Cc-----EEEEEEcCCcEEEEEE-CCeec--cCCCceEEEEec-CCEEEE
Confidence            34 7788888888888        9998  33     7889999999 99955 32221  234678899999 999988


Q ss_pred             EecCC----ceEEEe
Q 014644          410 CANGN----SLFFHY  420 (421)
Q Consensus       410 ~~~~~----~~~i~~  420 (421)
                      +++.+    .+++|+
T Consensus       298 ~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          298 SHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEETTEEEEEEEET
T ss_pred             EEcCCCCCCeEEEEc
Confidence            77632    355554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=7.4e-20  Score=164.77  Aligned_cols=264  Identities=9%  Similarity=0.086  Sum_probs=168.2

Q ss_pred             ccccccccccccEEEEEEEEcCCCCeEEEEeCC-CcEEEeecC--CceeEEeeecCCCCCcccccccccccceeeccCCC
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  100 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d-~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  100 (421)
                      +..+..+.|...+.+++|  +|++++|++++.+ +.|++|+++  +++...+........+.            .+.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~s~   93 (343)
T 1ri6_A           28 LTLTQVVDVPGQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT------------HISTDH   93 (343)
T ss_dssp             EEEEEEEECSSCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS------------EEEECT
T ss_pred             EEEeeeEecCCCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc------------EEEEcC
Confidence            344555677888999999  7999988888887 999999998  55544443332222333            333444


Q ss_pred             CceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeee--
Q 014644          101 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--  176 (421)
Q Consensus       101 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~--  176 (421)
                      ++.++..... ..+.+.+|++..+...+..+.+ ..+ ..+.+++|+|++++|+++  .++.|++||+...+......  
T Consensus        94 dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A           94 QGQFVFVGSY-NAGNVSVTRLEDGLPVGVVDVV-EGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             TSSEEEEEET-TTTEEEEEEEETTEEEEEEEEE-CCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEec-CCCeEEEEECCCCccccccccc-cCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence            5544433322 1346889998533233555555 333 458999999999977765  79999999998424332211  


Q ss_pred             ecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCc--ccccccchhhhccccccCCCcccccccccceeEE
Q 014644          177 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDI  253 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  253 (421)
                      ..   . ......+.+++|+|++ +++++++ .++.|.+||+..  +...  .......   .+..    ......+..+
T Consensus       171 ~~---~-~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~---~~~~----~~~~~~~~~i  236 (343)
T 1ri6_A          171 EV---T-TVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDM---MPEN----FSDTRWAADI  236 (343)
T ss_dssp             EE---E-CSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEEC---SCTT----CCSCCCEEEE
T ss_pred             cc---c-cCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccc---cCcc----ccccCCccce
Confidence            00   0 1123467889999999 7665554 889999999964  2211  0011110   0000    0012356789


Q ss_pred             EEcCCCCEEEEe-cC-CeEEEEECCCCC---cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCe
Q 014644          254 KFANDGQHLLSR-DY-MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNL  327 (421)
Q Consensus       254 ~~s~~~~~l~~~-~~-~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~  327 (421)
                      +|+|+|++|+++ .. +.|.+||+...+   +.+..+..+.. +               .+++|+|+|++|++++ .++.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-P---------------RGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-C---------------CCEEECTTSSEEEEECTTTCE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-c---------------ceEEECCCCCEEEEecCCCCe
Confidence            999999988754 34 999999997312   23333333332 2               6899999999888887 5899


Q ss_pred             EEEEecC
Q 014644          328 LRIFSHG  334 (421)
Q Consensus       328 i~iwd~~  334 (421)
                      |.+|+++
T Consensus       301 v~v~~~d  307 (343)
T 1ri6_A          301 ISVYEIV  307 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.1e-20  Score=166.39  Aligned_cols=236  Identities=11%  Similarity=0.126  Sum_probs=165.0

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCC-ceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ...|...|.+++|  +|++++|++++ ++.|++||+.+ ++...+                                   
T Consensus        37 ~~~~~~~v~~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~-----------------------------------   78 (297)
T 2ojh_A           37 VWQTPELFEAPNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKV-----------------------------------   78 (297)
T ss_dssp             EEEESSCCEEEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEEC-----------------------------------
T ss_pred             eccCCcceEeeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEe-----------------------------------
Confidence            3568889999999  79999999886 88999999987 542211                                   


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCC-CcceEEEeecCCCCEEEEE-cC--CcEEEEeCCCCceeeeeeecCCCCC
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                                               . ..+ ...+.+++|+|++++|+++ .+  +..+||.++........+       
T Consensus        79 -------------------------~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-------  125 (297)
T 2ojh_A           79 -------------------------D-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM-------  125 (297)
T ss_dssp             -------------------------C-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC-------
T ss_pred             -------------------------c-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe-------
Confidence                                     1 223 4668899999999999986 33  456666554222223222       


Q ss_pred             CccCCCeeEEEEecCCCCeEE-EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      ..+ ..+..++|+|++ +.|+ +++.++.+++|++......   ...+.             .+...+..++|+|+|++|
T Consensus       126 ~~~-~~~~~~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~-------------~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          126 TKN-LPSYWHGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ETRLT-------------HGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             CSS-SSEEEEEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EEECC-------------CSSSCEEEEEECTTSSEE
T ss_pred             ecC-CCccceEECCCC-CEEEEEECCCCceEEEEEECCCCc---ceEcc-------------cCCCccccceECCCCCEE
Confidence            222 348899999999 6665 7889999999986432111   01111             225678999999999988


Q ss_pred             EEec--CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-----------CeEE
Q 014644          263 LSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLR  329 (421)
Q Consensus       263 ~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-----------g~i~  329 (421)
                      +.+.  ++.+++|++...+.....+..+...+               ..++|+|+|++|++++.+           +.|+
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            7653  38899998864355555555544322               689999999999888765           5699


Q ss_pred             EEecCCCCCc-eeEEecCCCCccceeeecCCcccccccceeeeeccc
Q 014644          330 IFSHGVGSAG-GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR  375 (421)
Q Consensus       330 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d  375 (421)
                      +||+.++... ...+.+|...+..+.|+|+  +.     .|++++.+
T Consensus       253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spd--g~-----~l~~~~~~  292 (297)
T 2ojh_A          253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPD--GD-----EFAYVRYF  292 (297)
T ss_dssp             EEETTSCSCEEEEEEEESTTTSCSCCBCTT--SS-----EEEEEEEC
T ss_pred             EEecCCCCceeeeccCCCCcccccceECCC--CC-----EEEEEEec
Confidence            9999877332 3344588889999999998  33     66666544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=6.6e-21  Score=171.26  Aligned_cols=233  Identities=13%  Similarity=0.008  Sum_probs=160.5

Q ss_pred             ceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE----------
Q 014644          140 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------  207 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~----------  207 (421)
                      .+..++|+|+++.++. + .++.|.+||+. .++....+....  ...+...+.+++|+|++ +.|++++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCC--cccccccccceEECCCC-CEEEEEecccccccccc
Confidence            3678999999987654 5 78999999998 455554442110  00122367889999999 8888776          


Q ss_pred             --cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEE
Q 014644          208 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       208 --~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~  285 (421)
                        .++.|.+||+.+++..    ..+..              ...+..++|+|+|++|+++ ++.|++||+.+ ++....+
T Consensus       111 ~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~  170 (337)
T 1pby_B          111 EVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK  170 (337)
T ss_dssp             EECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred             cccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence              5799999999876543    22222              2357789999999988887 57899999986 7766666


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-C-----------------------eEEEEecCCCCCcee
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N-----------------------LLRIFSHGVGSAGGI  341 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g-----------------------~i~iwd~~~~~~~~~  341 (421)
                      ..+...                ..+.|+|+++.++..+.. +                       .|.+||+.++.....
T Consensus       171 ~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          171 PIQSWE----------------AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             CSTTTT----------------TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eccccC----------------CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            544321                134678888866554432 2                       478999998754444


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      .+..+...+..+.++|+  ++     .++++  ++. .+|+.. ............+.+++|+||+++|++++ ++.+.+
T Consensus       235 ~~~~~~~~~~~~~~s~d--g~-----~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v  305 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPA--KT-----RAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEECSSCEEEEEECTT--SS-----EEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             ecCCCCCceeeEEECCC--CC-----EEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence            45566666778899988  44     66666  566 888432 22223333445688999999999888777 567999


Q ss_pred             EeC
Q 014644          419 HYA  421 (421)
Q Consensus       419 ~~~  421 (421)
                      |++
T Consensus       306 ~d~  308 (337)
T 1pby_B          306 YDA  308 (337)
T ss_dssp             EET
T ss_pred             EEC
Confidence            974

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=8.9e-21  Score=189.05  Aligned_cols=288  Identities=10%  Similarity=0.013  Sum_probs=191.4

Q ss_pred             cceeeccCCCCceeeeeccc-cc---ccceeEEeecccceeeeeeeecCCCC------------------------cceE
Q 014644           91 KNFMNEHNPPSFAHGYHLEW-TE---NMATKIANVGNSVHARCQKVYPHAHD------------------------FNIN  142 (421)
Q Consensus        91 ~~~~~~~~~~~~~~~~~g~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~h~------------------------~~v~  142 (421)
                      ..+..+.+++++.+++.++. +.   ...+.+|+..++   +..+.+ ..+.                        ..|.
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG---QTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC---CEEEEE-CGGGTC--------------------CCEESC
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC---ceeEcc-chhhcccccccccchhhhhhhhhhhccccCcc
Confidence            34667778888888887766 32   137899998876   554444 3332                        3488


Q ss_pred             EEeecCCCCEEEEEcCCcEEEEeCCCCc--eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          143 SISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       143 ~l~~~~~~~~l~s~~d~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      +++|+|||++|+++.++.|++||+....  ...        .+..|...+.+++|+||| +.|++++ ++.|++||+.++
T Consensus       113 ~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEESSSCSTTSCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTT
T ss_pred             eeEECCCCCEEEEEeCCcEEEEECCCCCcceEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCC
Confidence            9999999999999955999999998331  332        235677889999999999 8888877 568999999886


Q ss_pred             cccccchhhhccccccC--C-CcccccccccceeEEEEcCCCCEEEEecC-C----------------------------
Q 014644          221 ALCDHSARILRDAAESH--G-SKSFFTEIIASISDIKFANDGQHLLSRDY-M----------------------------  268 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~----------------------------  268 (421)
                      +..    .....+....  . ...........+..++|+|||++|++++. +                            
T Consensus       183 ~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          183 RQM----QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             EEE----ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             CEE----EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence            532    2111100000  0 00000000122578999999999987642 3                            


Q ss_pred             -----eEEEEECCCCCcceeEEee--ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-----CCeEEEEecCCC
Q 014644          269 -----NLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----SNLLRIFSHGVG  336 (421)
Q Consensus       269 -----~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-----dg~i~iwd~~~~  336 (421)
                           .|++||+.+.++.......  +...               +.+++| |||++|++++.     +..|++||+.++
T Consensus       259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIY---------------LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             CCCEEEEEEECSSTTCCCEEECCCSCSSEE---------------EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             CCCeeEEEEEECCCCCceEEecCCCCcceE---------------EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence                 7888888631333222211  2221               268999 99999987654     568999999987


Q ss_pred             CCceeEEecCCC----CccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEE-EEccCCCeE
Q 014644          337 SAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHL-AWHPTTNLI  408 (421)
Q Consensus       337 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~-~~spd~~~l  408 (421)
                       .....+..+..    .+..+.|+|+  ++     .+++++.++. +||  +..+....+..+...|..+ +|+||++.|
T Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~spd--g~-----~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l  394 (741)
T 2ecf_A          323 -QQRVLAHETSPTWVPLHNSLRFLDD--GS-----ILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLA  394 (741)
T ss_dssp             -CEEEEEEEECSSCCCCCSCCEECTT--SC-----EEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEE
T ss_pred             -ceEEEEEcCCCCcCCcCCceEECCC--Ce-----EEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEE
Confidence             44455554443    4568899998  43     7888888888 888  3222255556667778887 599999987


Q ss_pred             EEec-CC---ceEEEe
Q 014644          409 ACAN-GN---SLFFHY  420 (421)
Q Consensus       409 a~~~-~~---~~~i~~  420 (421)
                      +..+ .+   .+.||.
T Consensus       395 ~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          395 YFRAGIESARESQIYA  410 (741)
T ss_dssp             EEEECSSCTTCBEEEE
T ss_pred             EEEEeCCCCceEEEEE
Confidence            6544 43   577775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.1e-20  Score=185.86  Aligned_cols=287  Identities=10%  Similarity=0.018  Sum_probs=181.2

Q ss_pred             eeeccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCc---ceEEEeecCCCCEEEEE-cC---------C
Q 014644           93 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-DD---------L  159 (421)
Q Consensus        93 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~-~d---------~  159 (421)
                      ..++.+++++.++.. +  .++.+++|+..++   ++...+ .+|..   .|.+++|||||++|+++ .+         +
T Consensus        19 ~~~~~~spdg~~~~~-~--~dg~i~~~d~~~g---~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-E--QKGTVRLWNVETN---TSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCBSSSSCBCCC-C--SSSCEEEBCGGGC---CCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccEEcCCCcEEEE-e--CCCCEEEEECCCC---cEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence            445566666665544 2  3458999999887   666666 66654   49999999999999997 53         7


Q ss_pred             cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC
Q 014644          160 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  239 (421)
Q Consensus       160 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~  239 (421)
                      .+++||+. +++. +.+    ....+|...+.+++|+||| +.|++++. +.|++||+.+++..    ++...+...   
T Consensus        92 ~i~~~d~~-~~~~-~~l----~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~~---  156 (723)
T 1xfd_A           92 YYVLSKIP-HGDP-QSL----DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKEG---  156 (723)
T ss_dssp             EEEEEESS-SCCC-EEC----CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBTT---
T ss_pred             eEEEEECC-CCce-Eec----cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCCC---
Confidence            88899998 4443 222    1224455668999999999 88888875 79999999886532    221110000   


Q ss_pred             cccccccc---------cceeEEEEcCCCCEEEEecC-C----------------------------------eEEEEEC
Q 014644          240 KSFFTEII---------ASISDIKFANDGQHLLSRDY-M----------------------------------NLKLWDI  275 (421)
Q Consensus       240 ~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~-~----------------------------------~i~i~d~  275 (421)
                       ..+.++.         ..+..++|+|||++|++++. +                                  .|++||+
T Consensus       157 -~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          157 -VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             -TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             -ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence             0000111         13478999999999987642 2                                  6888888


Q ss_pred             CCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC----CCeEEEEecCCCCCceeEEe-cCCCCc
Q 014644          276 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVE-AGKNEN  350 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~----dg~i~iwd~~~~~~~~~~~~-~~~~~~  350 (421)
                      .+ ++....+..+....       .  .-..+.+++|+|||++|++.+.    +..|++||+.++ .....+. .+...+
T Consensus       236 ~~-~~~~~~l~~~~~~~-------~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~  304 (723)
T 1xfd_A          236 NG-PTHDLEMMPPDDPR-------M--REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWL  304 (723)
T ss_dssp             SS-SCCCEECCCCCCGG-------G--SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCC
T ss_pred             CC-CceeEEeeCCccCC-------C--ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEE
Confidence            75 54434444331100       0  0012368999999999877653    357999999987 3344433 344444


Q ss_pred             ----cceeeecCCcccccccceeee--ecccC----c-ccC--C--CCCc---cccccccccCeEE-EEEccCCCeEEEe
Q 014644          351 ----RKPILQAAPRARRSSLSNLTR--GLYRQ----A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACA  411 (421)
Q Consensus       351 ----~~~~~~~~~~~~~~~~~~l~~--g~~d~----~-~iw--~--~~~~---~~~~~~~~~~v~~-~~~spd~~~la~~  411 (421)
                          ..+.|+|+  |+     .|+.  +..++    . +||  +  .++.   ...+......+.. ++|+|||+.|+..
T Consensus       305 ~~~~~~~~~spd--g~-----~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~  377 (723)
T 1xfd_A          305 HRQNEEPVFSKD--GR-----KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (723)
T ss_dssp             CCCCCCCEECTT--SC-----SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             eccCCCceEcCC--CC-----eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence                37899998  44     4443  45565    3 455  4  2333   3333333344554 6999999999866


Q ss_pred             c-C---CceEEEe
Q 014644          412 N-G---NSLFFHY  420 (421)
Q Consensus       412 ~-~---~~~~i~~  420 (421)
                      + .   +.+.+|.
T Consensus       378 ~~~~~~~~~~l~~  390 (723)
T 1xfd_A          378 STEDLPRRRQLYS  390 (723)
T ss_dssp             ESSSCTTCCEEEE
T ss_pred             EcCCCCcceEEEE
Confidence            5 3   4577775

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.1e-19  Score=180.63  Aligned_cols=326  Identities=13%  Similarity=0.041  Sum_probs=199.0

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc-----
Q 014644           38 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----  112 (421)
Q Consensus        38 ~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----  112 (421)
                      .++|  +|++. ++.++.|++|++||+.+++...+...+...          ...+.+..+++++.+++.++...     
T Consensus        20 ~~~~--s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~   86 (719)
T 1z68_A           20 FPNW--ISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMK----------SVNASNYGLSPDRQFVYLESDYSKLWRY   86 (719)
T ss_dssp             CCEE--SSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHH----------TTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred             ccEE--CCCCe-EEEEcCCCCEEEEEcCCCcEEEEEcccccc----------ccceeeEEECCCCCeEEEEecCceeEEe
Confidence            6788  78885 455557999999999998855443311000          01255667778887777665421     


Q ss_pred             --ccceeEEeecccceeeee--eeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          113 --NMATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       113 --~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                        ...+.+|++.++   +++  +.+    ...+..++|||||+.|+.+.++.|++|++. +++..++.      ..++..
T Consensus        87 s~~~~i~~~d~~~g---~~~~~~~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~------~~~~~~  152 (719)
T 1z68_A           87 SYTATYYIYDLSNG---EFVRGNEL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQIT------FNGREN  152 (719)
T ss_dssp             CEEEEEEEEETTTT---EECCSSCC----CSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECC------CCCBTT
T ss_pred             ecceEEEEEECCCC---ccccceec----CcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEe------cCCCcC
Confidence              358999998876   442  122    246889999999999999978899999998 44443321      122222


Q ss_pred             C-----------------eeEEEEecCCCCeEEEEEcCC----------------------------------eEEEEEC
Q 014644          189 V-----------------ITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDM  217 (421)
Q Consensus       189 ~-----------------v~~~~~~p~~~~~l~s~~~d~----------------------------------~v~iwd~  217 (421)
                      .                 ..+++|+||| +.|++++.|.                                  .|++||+
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            1                 2589999999 8999887652                                  7889998


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-----CeEEEEE----CCCCCcceeEE---
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF---  285 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----~~i~i~d----~~~~~~~~~~~---  285 (421)
                      .+++.... ..+..        ...+..|...+..++|+||++++++..+     ..|.+||    +.+ ++....+   
T Consensus       232 ~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~  301 (719)
T 1z68_A          232 TYPAYVGP-QEVPV--------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHI  301 (719)
T ss_dssp             SCHHHHCC-EECCC--------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEE
T ss_pred             CCCCccce-eEccC--------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecc
Confidence            87652100 00000        0012234678999999999887776422     3588899    764 5444333   


Q ss_pred             -eeccCcccccccccCCCcceeeeEEEEcCCCCEEEE--eeCCC--eEEEEecCCCCCceeEEecCCCCccceeeecCCc
Q 014644          286 -KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR  360 (421)
Q Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (421)
                       ..+...+..       ..   ...+.|+|||+.|+.  ...+|  .|++||+.++.  ...+..+...+..+.+. +  
T Consensus       302 ~~~~~~~~~~-------~~---~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d--  366 (719)
T 1z68_A          302 EESRTGWAGG-------FF---VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-T--  366 (719)
T ss_dssp             EECSSSCSSS-------SS---CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-C--
T ss_pred             cccCCceEcc-------cc---CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-e--
Confidence             234433200       00   016789999996554  44555  57777776552  45555555556666666 4  


Q ss_pred             ccccccceeeeecc----cCc-ccCC--C-CC-c-cccc----cccccCeEEEEEccCCCeEEEec-C---CceEEEe
Q 014644          361 ARRSSLSNLTRGLY----RQA-HENS--S-SG-H-HELS----YNLSSKLLHLAWHPTTNLIACAN-G---NSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l~~g~~----d~~-~iw~--~-~~-~-~~~~----~~~~~~v~~~~~spd~~~la~~~-~---~~~~i~~  420 (421)
                      ++    ..++++..    ++. ++|.  . ++ . ...+    .++...+..++|+||++.|+..+ .   -.+++|+
T Consensus       367 ~~----~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          367 QD----SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             SS----EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             CC----EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence            33    13444443    355 8882  2 12 1 1111    12456788999999999888543 2   2355654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=6e-20  Score=170.52  Aligned_cols=224  Identities=8%  Similarity=0.064  Sum_probs=151.6

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...++.+++  ++++.++++++.|+ +++|+.....  ....  ..+.                                
T Consensus        36 ~~~~n~lav--s~~~~~l~~~~~dg-v~v~~~~~~~--~~~~--~~~~--------------------------------   76 (434)
T 2oit_A           36 KERSSLLAV--SNKYGLVFAGGASG-LQIFPTKNLL--IQNK--PGDD--------------------------------   76 (434)
T ss_dssp             CSCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHC--CCCC--TTCC--------------------------------
T ss_pred             CCCccEEEE--ecCCCEEEEECCCE-EEEEEchHhh--hhcc--cccC--------------------------------
Confidence            346889999  67888999999888 9998864321  0000  0000                                


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEE----EE-cCCcEEEEeCCCC-----c--eeeeeeecCC
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV----SA-DDLRINLWNLEIS-----D--QCFNIVDMKP  180 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~----s~-~d~~i~lwd~~~~-----~--~~~~~~~~~~  180 (421)
                        ...+...      .....+  .+...|.+++|+|++++|+    ++ .|++|++||++..     .  +.+..+    
T Consensus        77 --~~~~~~~------~~~~~~--~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~----  142 (434)
T 2oit_A           77 --PNKIVDK------VQGLLV--PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH----  142 (434)
T ss_dssp             --TTCEEEC------CCCEEE--CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE----
T ss_pred             --ccccccc------Cccccc--cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee----
Confidence              0000000      111122  4677899999999999999    77 8999999998632     0  111111    


Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ..+.+|...|.+++|+|+...+|++++.||+|++||++++...    ...             ..|...+.+++|+|+|+
T Consensus       143 ~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~----~~~-------------~~~~~~v~~v~wspdg~  205 (434)
T 2oit_A          143 KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV----CAT-------------LPSTVAVTSVCWSPKGK  205 (434)
T ss_dssp             ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE----EEE-------------ECGGGCEEEEEECTTSS
T ss_pred             eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce----eec-------------cCCCCceeEEEEcCCCC
Confidence            1346799999999999984389999999999999999986422    111             12367899999999999


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCC------eEEEEe
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSN------LLRIFS  332 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg------~i~iwd  332 (421)
                      +|++|+. +.|++||++  ++....+..+....        .+....+.+++|++++.++++. +.+|      .+++|+
T Consensus       206 ~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~--------~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~  275 (434)
T 2oit_A          206 QLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYE--------SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL  275 (434)
T ss_dssp             CEEEEETTSCEEEECTT--CCEEEEECCCTTCC--------TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred             EEEEEcCCCcEEEEccC--CcccccccCCcccC--------CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence            9999876 999999997  44444554433210        0111134799999998887543 3443      389999


Q ss_pred             cCCC
Q 014644          333 HGVG  336 (421)
Q Consensus       333 ~~~~  336 (421)
                      +...
T Consensus       276 l~~~  279 (434)
T 2oit_A          276 LPKK  279 (434)
T ss_dssp             CCCT
T ss_pred             eccC
Confidence            9865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.2e-18  Score=154.55  Aligned_cols=253  Identities=8%  Similarity=0.036  Sum_probs=160.0

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeC-CCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~-d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      ...+ .++|  +|+++++++++. ++.|.+||..+++. ..... .+..+            ..++.+++++.++.. ..
T Consensus        40 ~~~~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~------------~~~~~~s~dg~~l~~-~~  102 (331)
T 3u4y_A           40 YDFV-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSS------------MADVDITPDDQFAVT-VT  102 (331)
T ss_dssp             CCEE-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-ECSSC------------CCCEEECTTSSEEEE-CC
T ss_pred             CCcc-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cCCCC------------ccceEECCCCCEEEE-ec
Confidence            3445 8999  789986666655 89999999988874 22222 11121            111445556665552 22


Q ss_pred             cccc--ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCc-EEEEeCCCCceeeeeeecCCCCCCc
Q 014644          111 TENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR-INLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       111 ~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      ....  .+.+|+..+.   +.++.+ .. .....+++|+|+|++|++ + .++. |.+|++...+...... .   ....
T Consensus       103 ~~~~~~~i~v~d~~~~---~~~~~~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~~  173 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKN---KFISTI-PI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFIS  173 (331)
T ss_dssp             CSSSSCEEEEEETTTT---EEEEEE-EC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEEC
T ss_pred             CCCCcccEEEEECCCC---CeEEEE-EC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---cccc
Confidence            2223  7899999877   666665 33 345689999999986655 4 6678 9999998444332210 0   0012


Q ss_pred             cCCCeeEEEEecCCCCeEE-EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          186 LTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      ....+.+++|+|++ ++++ ++..++.|++||+.+++.. +....+..              ...+..++|+|||++++.
T Consensus       174 ~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v  237 (331)
T 3u4y_A          174 GGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYV  237 (331)
T ss_dssp             SSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEE
T ss_pred             CCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEE
Confidence            33457899999999 7554 4457899999999876641 00122222              356788999999998776


Q ss_pred             ec-C-CeEEEEECCCCCcc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          265 RD-Y-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       265 ~~-~-~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      +. . +.|.+||+.+ ++.  +..+...-...        ....+....++|+|+|++|++++ .++.|.+||+...
T Consensus       238 ~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          238 LTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             ECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            53 3 8899999986 655  33332220000        00111114589999999886655 4679999999854

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=4.7e-18  Score=153.50  Aligned_cols=242  Identities=10%  Similarity=0.021  Sum_probs=142.4

Q ss_pred             CCCcEEEeecC--CceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc-ccccceeEEeecccceeeeee
Q 014644           55 NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-TENMATKIANVGNSVHARCQK  131 (421)
Q Consensus        55 ~d~~v~lwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~  131 (421)
                      .++.|.+|+++  ++++..+.......            ....+.+++++. +..... .....+.+|++..+. .+.+.
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~------------~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~   79 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQ------------NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLN   79 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECS------------CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccC------------CcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEee
Confidence            45678888765  45544433222222            223344455555 333322 234578899986542 23344


Q ss_pred             eecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCC----CCCCccCCCeeEEEEecCCCCeEEE
Q 014644          132 VYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       132 ~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                      .+ ..+...+..++|+|+|++|+++  .+++|.+|++...+..........    .....+...+.+++|+|++ +++++
T Consensus        80 ~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~  157 (347)
T 3hfq_A           80 TV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVI  157 (347)
T ss_dssp             EE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEE
T ss_pred             ee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEE
Confidence            43 4567788999999999988775  689999999964333222111100    0001123458899999999 66666


Q ss_pred             EEcCCeEEEEECC-cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCC-Ccc
Q 014644          206 SSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMD-STP  281 (421)
Q Consensus       206 ~~~d~~v~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~-~~~  281 (421)
                      ...++.|++||+. .+....  ...+..            .....+..++|+|||+++++. .. +.|.+|++... ++.
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~--~~~~~~------------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSE--QSVLTM------------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEE--EEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             eCCCCEEEEEEECCCCcEEE--eeeEEc------------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence            6678999999998 333210  000111            002356789999999977664 44 89999998741 322


Q ss_pred             --eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCC
Q 014644          282 --VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV  335 (421)
Q Consensus       282 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~  335 (421)
                        +..+.......       .  ....+..++|+|||++|+ +...++.|.+|++..
T Consensus       224 ~~~~~~~~~~~~~-------~--~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          224 TQLGIVKTIPADY-------T--AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEEEEEESSCTTC-------C--SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEeeeeeecCCCC-------C--CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence              11222111100       0  000126899999999874 556689999999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=5.7e-19  Score=175.03  Aligned_cols=263  Identities=11%  Similarity=0.058  Sum_probs=174.2

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      ..|.+++|  +|+ ..++.+ .|++|++||+.+++...+..  +...+            ..+.+++++..++..   .+
T Consensus        82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~--~~~~~------------~~~~~SpdG~~la~~---~~  140 (706)
T 2z3z_A           82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYLFD--TNEET------------ASLDFSPVGDRVAYV---RN  140 (706)
T ss_dssp             CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEEEC--CTTCC------------TTCEECTTSSEEEEE---ET
T ss_pred             cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEccC--Ccccc------------cCCcCCCCCCEEEEE---EC
Confidence            46999999  788 666665 45999999999887554433  23323            334455566555543   24


Q ss_pred             cceeEEeecc-----cceeeeeeeecCCCCcc--------------eEEEeecCCCCEEEEE-cC---------------
Q 014644          114 MATKIANVGN-----SVHARCQKVYPHAHDFN--------------INSISNNSDCETFVSA-DD---------------  158 (421)
Q Consensus       114 ~~~~~~~~~~-----~~~~~~~~~~~~~h~~~--------------v~~l~~~~~~~~l~s~-~d---------------  158 (421)
                      ..+.+|++.+     +   +..+.. ..+...              +.+++|+|||++|+++ .|               
T Consensus       141 ~~i~v~~~~~~~~~~g---~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~  216 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMS---RAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPL  216 (706)
T ss_dssp             TEEEEEECBCTTSCCC---CCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSS
T ss_pred             CeEEEEecCcccccCC---CcEEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence            5789999876     5   444444 333332              5899999999999986 32               


Q ss_pred             ------------------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC-----eEEEE
Q 014644          159 ------------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLV  215 (421)
Q Consensus       159 ------------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~-----~v~iw  215 (421)
                                        ..|++||+. +++.....     ....|...+.+++|+|+| +.|++++.++     .|++|
T Consensus       217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          217 EAESKPLYYPMAGTPSHHVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             SCEEEEECCCBTTSCCCEEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEE
T ss_pred             CCceEEeeCCCCCCCCCeeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEE
Confidence                              579999998 44433321     113466789999999999 8888888776     89999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcC--CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      |+.+++...   .....+ .        ......+..++|+|  ||+++++++. +.++||++...+..+..+..+...+
T Consensus       290 d~~~g~~~~---~~~~~~-~--------~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          290 DAETGRFVR---TLFVET-D--------KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV  357 (706)
T ss_dssp             ETTTCCEEE---EEEEEE-C--------SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE
T ss_pred             ECCCCceee---EEEEcc-C--------CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE
Confidence            998873221   111110 0        00012346789999  9998888765 8888888764356566665554332


Q ss_pred             cccccccCCCcceeeeE-EEEcCCCCEEEEeeC-CC----eEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          293 PKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~-~~~sp~~~~l~~~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                                     .+ ++|+|+|+.|+.++. ++    .|+.||+.++.  ...+. +...+..+.|+|+
T Consensus       358 ---------------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~spd  411 (706)
T 2z3z_A          358 ---------------TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSPD  411 (706)
T ss_dssp             ---------------EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECTT
T ss_pred             ---------------EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECCC
Confidence                           44 799999998766554 44    67777777652  23333 5667888999988

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.2e-18  Score=157.34  Aligned_cols=268  Identities=9%  Similarity=0.091  Sum_probs=161.9

Q ss_pred             CccccccccccccEEEEEEEEcCCCCeEEEEeC---CCcEEEeecCCceeEEeeec-CCCCCcccccccccccceeeccC
Q 014644           23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~---d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      ++..+....+......++|  +|+++ |++++.   ++.|.+|++.+++.+.+... .+..            .+..+++
T Consensus        29 ~~~~~~~~~~~~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~------------~p~~~a~   93 (347)
T 3hfq_A           29 TLTNDGLLAATQNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT------------PPAYVAV   93 (347)
T ss_dssp             EEEEEEEEEECSCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC------------CCSEEEE
T ss_pred             eEEEeeeeeccCCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC------------CCEEEEE
Confidence            3444444556677888999  78888 555444   68999999987765444331 1122            2233444


Q ss_pred             CCCceeeeecccccccceeEEeecccceeeeeeeecC-C-------CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC
Q 014644           99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH-A-------HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  169 (421)
Q Consensus        99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~  169 (421)
                      ++++.++..... ..+.+.+|++........+..+.. +       +...+.+++|+|+|+++++. .++.|.+|++...
T Consensus        94 spdg~~l~~~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           94 DEARQLVYSANY-HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             ETTTTEEEEEET-TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEEeC-CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            455554444332 235688998864322233333311 1       22358899999999966666 7899999999843


Q ss_pred             ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE-EEcCCeEEEEECCc--ccccccchhhhccccccCCCccccccc
Q 014644          170 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d~~v~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      +........   . ......+..++|+|+| +++++ ...++.|.+|++..  +...  ....+..   .+..   + ..
T Consensus       173 g~~~~~~~~---~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~---~~~~---~-~~  238 (347)
T 3hfq_A          173 GQLSEQSVL---T-MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKT---IPAD---Y-TA  238 (347)
T ss_dssp             SCEEEEEEE---E-CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEES---SCTT---C-CS
T ss_pred             CcEEEeeeE---E-cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--Eeeeeee---cCCC---C-CC
Confidence            433221100   0 1122356789999999 75555 55789999999874  3211  0011111   0000   0 00


Q ss_pred             ccceeEEEEcCCCCEEEE-ecC-CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe
Q 014644          247 IASISDIKFANDGQHLLS-RDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  322 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~-~~~-~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~  322 (421)
                      ...+..++|+|||++|++ ... +.|.+|++...+  +.+..+..+....               ..++|+|||++|+++
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVV  303 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEE
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEE
Confidence            145889999999998854 443 899999996323  2333343333222               689999999998888


Q ss_pred             eC-CCeEEEEecCC
Q 014644          323 SY-SNLLRIFSHGV  335 (421)
Q Consensus       323 s~-dg~i~iwd~~~  335 (421)
                      +. ++.|.+|+++.
T Consensus       304 ~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          304 NQNTDNATLYARDL  317 (347)
T ss_dssp             ETTTTEEEEEEECT
T ss_pred             EcCCCcEEEEEEeC
Confidence            76 48999996653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.8e-18  Score=171.97  Aligned_cols=327  Identities=9%  Similarity=-0.029  Sum_probs=190.1

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ......+.|  ++++.+++++  |++|++||+.+++...+...+. .....+       ......+++++..++....+.
T Consensus        16 ~~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~Spdg~~l~~~~~~~   83 (740)
T 4a5s_A           16 RLKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST-FDEFGH-------SINDYSISPDGQFILLEYNYV   83 (740)
T ss_dssp             CCCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT-TTTCCS-------CCCEEEECTTSSEEEEEEEEE
T ss_pred             cccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh-hhhhcc-------cccceEECCCCCEEEEEECCe
Confidence            445668999  6889888886  9999999999988554433221 111111       111234466777666555421


Q ss_pred             -------ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          113 -------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       113 -------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                             .+.+.+|++.++   ++.+ + ..|...+...+|||||+.||.+.++.|++|++. ++...++.      ..+
T Consensus        84 ~~~r~~~~~~~~~~d~~~~---~~~~-l-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~~g  151 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKR---QLIT-E-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------WTG  151 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTT---EECC-S-SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------SCC
T ss_pred             eeEEEccceEEEEEECCCC---cEEE-c-ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------CCC
Confidence                   135678998887   5443 3 567788999999999999999878899999998 44443321      122


Q ss_pred             cCCC-----------------eeEEEEecCCCCeEEEEEcCC------------------------------------eE
Q 014644          186 LTEV-----------------ITSAEFHPIYCNLLAYSSSRG------------------------------------FV  212 (421)
Q Consensus       186 ~~~~-----------------v~~~~~~p~~~~~l~s~~~d~------------------------------------~v  212 (421)
                      +...                 ..++.||||| +.|++++.|.                                    +|
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l  230 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF  230 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEE
Confidence            2222                 2358999999 8888876443                                    24


Q ss_pred             EEEECCc---ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe----cC-CeEEEEECCCCCc----
Q 014644          213 RLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKLWDIRMDST----  280 (421)
Q Consensus       213 ~iwd~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~-~~i~i~d~~~~~~----  280 (421)
                      ++||+.+   +....  ...+..       ...+.++...+..++|+|||+.++..    .. ..|++||+.+ ++    
T Consensus       231 ~v~d~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~  300 (740)
T 4a5s_A          231 FVVNTDSLSSVTNAT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWN  300 (740)
T ss_dssp             EEEETTSCCSSSCCC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEE
T ss_pred             EEEECCCCCCCCcce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cccccc
Confidence            4444444   31000  000000       00011256789999999999977653    22 4799999986 54    


Q ss_pred             c--eeEE--eeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeC-C--CeEEEEecCCCCCceeEEecCCCCccc
Q 014644          281 P--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNENRK  352 (421)
Q Consensus       281 ~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~  352 (421)
                      +  +..+  ..+...+..          .....++|+|||+.|+ ..+. +  ..|++||+..+ .. ..+......+..
T Consensus       301 ~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~-~~lT~g~~~v~~  368 (740)
T 4a5s_A          301 CLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DC-TFITKGTWEVIG  368 (740)
T ss_dssp             ECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SC-EESCCSSSCEEE
T ss_pred             eeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ce-EecccCCEEEEE
Confidence            1  1222  334333210          0013678999999877 6664 3  46888888765 33 333333334443


Q ss_pred             eeeecCCcccccccceeeeecc----cCc-ccC--CCC-Cccc-ccc----ccccCeEEEEEccCCCeEEEecC
Q 014644          353 PILQAAPRARRSSLSNLTRGLY----RQA-HEN--SSS-GHHE-LSY----NLSSKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       353 ~~~~~~~~~~~~~~~~l~~g~~----d~~-~iw--~~~-~~~~-~~~----~~~~~v~~~~~spd~~~la~~~~  413 (421)
                      +.. ++  ++    ..++++..    .+. .||  ... .... .+.    +....+..++|+|++++++....
T Consensus       369 ~~~-~d--~~----~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          369 IEA-LT--SD----YLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             EEE-EC--SS----EEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             EEE-Ee--CC----EEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence            332 33  22    13334433    233 677  221 1111 111    12356789999999998876653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=1.3e-19  Score=168.33  Aligned_cols=172  Identities=10%  Similarity=0.035  Sum_probs=120.3

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCC-------ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE----E
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEIS-------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA----Y  205 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~----s  205 (421)
                      ...++.+++++++.+++++ .++ +++|+....       ..........+.....+...|.+++|+|++ ++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEec
Confidence            3468899999999999998 776 999875410       000001100000012355679999999999 8888    7


Q ss_pred             EEcCCeEEEEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEecC-CeEEEEECCCCCcce
Q 014644          206 SSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPV  282 (421)
Q Consensus       206 ~~~d~~v~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~i~d~~~~~~~~  282 (421)
                      ++.|+.|++||+.++.... +..+.+       .....+.+|...|.+++|+|+ +.+|++++. ++|++||+++ +..+
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~  185 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPF-------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKV  185 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCS-------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEE
T ss_pred             cCCCceEEEEEccccccCCcCCccee-------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-Ccce
Confidence            7889999999987641000 000000       001123456889999999998 788998865 9999999986 5555


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ....+|...+               .+++|+|+|++|++|+.||.|++||++
T Consensus       186 ~~~~~~~~~v---------------~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          186 CATLPSTVAV---------------TSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEECGGGCE---------------EEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eeccCCCCce---------------eEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            4555555543               799999999999999999999999988

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=4.7e-17  Score=147.77  Aligned_cols=220  Identities=9%  Similarity=0.050  Sum_probs=136.9

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCC----CcEEEeecCC--ceeEEeeecCCCCCcccccccccccceeeccC
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN   98 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d----~~v~lwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   98 (421)
                      ..+... +......++|  +|++++|++++.+    +.|.+|+++.  +++..+.                         
T Consensus        42 ~~~~~~-~~~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-------------------------   93 (361)
T 3scy_A           42 LPLSDA-EVANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-------------------------   93 (361)
T ss_dssp             EEEEEE-ECSCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE-------------------------
T ss_pred             EEeecc-cCCCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee-------------------------
Confidence            333334 6667788899  7999999998886    7999999865  3322221                         


Q ss_pred             CCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeee
Q 014644           99 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  176 (421)
Q Consensus        99 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~  176 (421)
                                                       .. ..+......+++  ++++|+++  .+++|.+|++...+......
T Consensus        94 ---------------------------------~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~  137 (361)
T 3scy_A           94 ---------------------------------TQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS  137 (361)
T ss_dssp             ---------------------------------EE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred             ---------------------------------Ee-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence                                             11 223345566777  78877765  68999999997443322111


Q ss_pred             ---ecC---CCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccc------cccc--hhhhccccccCCCcc
Q 014644          177 ---DMK---PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKS  241 (421)
Q Consensus       177 ---~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~------~~~~--~~~~~~h~~~~~~~~  241 (421)
                         ...   +.....+...+.+++|+|++ +++++++ .++.|++|++.....      ....  ......         
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---------  207 (361)
T 3scy_A          138 DVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV---------  207 (361)
T ss_dssp             EEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---------
T ss_pred             eeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec---------
Confidence               000   00012233456889999999 7665555 589999999875431      1000  000000         


Q ss_pred             cccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcce--eEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          242 FFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                         .....+..++|+|||+++++++ . +.|.+|++.+ ++..  ..+.......            .....++|+|||+
T Consensus       208 ---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~------------~~~~~i~~spdg~  271 (361)
T 3scy_A          208 ---APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNA------------QGSGDIHLSPDGK  271 (361)
T ss_dssp             ---CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCC------------CCEEEEEECTTSS
T ss_pred             ---CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCC------------CCcccEEECCCCC
Confidence               1134567899999999887664 3 8999999974 5432  2222111100            0115899999999


Q ss_pred             EEEEeeC--CCeEEEEecC
Q 014644          318 HFATGSY--SNLLRIFSHG  334 (421)
Q Consensus       318 ~l~~~s~--dg~i~iwd~~  334 (421)
                      +|+++..  ++.|.+|++.
T Consensus       272 ~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          272 YLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEECSSSCEEEEEEEC
T ss_pred             EEEEECCCCCCEEEEEEEc
Confidence            9877665  4899999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=6.4e-18  Score=152.48  Aligned_cols=288  Identities=9%  Similarity=-0.012  Sum_probs=166.2

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      ++++.++++++.+++|++||..+++......                                                 
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------------------------------   38 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-------------------------------------------------   38 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------------
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe-------------------------------------------------
Confidence            5678899999999999999998875221110                                                 


Q ss_pred             cceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCC
Q 014644          124 SVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  201 (421)
Q Consensus       124 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  201 (421)
                                 .+....+..++|+|++++++. + .++.|.+||+. .++....+..... -......+.+++|+|++ +
T Consensus        39 -----------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~  104 (349)
T 1jmx_B           39 -----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSSV-PGEVGRSMYSFAISPDG-K  104 (349)
T ss_dssp             -----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCCS-TTEEEECSSCEEECTTS-S
T ss_pred             -----------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEEcccc-cccccccccceEECCCC-C
Confidence                       111124678899999986654 5 78999999998 4555544321100 00002347889999999 8


Q ss_pred             eEEEEEcC------------CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644          202 LLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  269 (421)
Q Consensus       202 ~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  269 (421)
                      +|++++.+            +.|.+||+.+++... ....+..              ...+.+++|+|+|+ +++++ +.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~s~dg~-l~~~~-~~  167 (349)
T 1jmx_B          105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPM--------------PRQVYLMRAADDGS-LYVAG-PD  167 (349)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEEC--------------CSSCCCEEECTTSC-EEEES-SS
T ss_pred             EEEEEcccccccccccccCCCeEEEEECCCccccc-eeeeccC--------------CCcccceeECCCCc-EEEcc-Cc
Confidence            88888765            899999998754321 1111111              33578899999999 55443 45


Q ss_pred             EEEEECCCCCcceeEEeeccCccccc------c--cccCCCcc-eeeeEEEEcCCCCEEEEeeCCC-eEEEEecCCCCCc
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKL------C--DLYNNDSI-FDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAG  339 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~-~~~~~~~~sp~~~~l~~~s~dg-~i~iwd~~~~~~~  339 (421)
                      |++||+.+ ++.+..+..+....+..      .  ........ .....+++++++.......... .+..++..++...
T Consensus       168 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  246 (349)
T 1jmx_B          168 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  246 (349)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence            99999986 77666654332100000      0  00000000 0113466666542211111111 1222444444322


Q ss_pred             eeEEecCCCCccceeeec-CCcccccccceeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEec-CCc
Q 014644          340 GITVEAGKNENRKPILQA-APRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNS  415 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~  415 (421)
                      ...+..+......++++| +  ++     .++.+  ++. .+|+.. ............+..++|+||++.|++++ ++.
T Consensus       247 ~~~~~~~~~~~~~~~~sp~d--g~-----~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  317 (349)
T 1jmx_B          247 TQEFADLTELYFTGLRSPKD--PN-----QIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND  317 (349)
T ss_dssp             EEEEEECSSCEEEEEECSSC--TT-----EEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             ecccccCCCcceeeEecCCC--CC-----EEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe
Confidence            333333455566778888 6  33     66666  556 888432 22222333445678999999999888776 667


Q ss_pred             eEEEeC
Q 014644          416 LFFHYA  421 (421)
Q Consensus       416 ~~i~~~  421 (421)
                      +.+|+.
T Consensus       318 v~v~d~  323 (349)
T 1jmx_B          318 LAVFNP  323 (349)
T ss_dssp             EEEEET
T ss_pred             EEEEec
Confidence            999974

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=1.5e-17  Score=149.18  Aligned_cols=251  Identities=11%  Similarity=0.057  Sum_probs=164.4

Q ss_pred             cEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc---
Q 014644           35 KINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---  110 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---  110 (421)
                      .+..++|  +|+++++ ++++.++.|.+||+.+++............        ....+..+.+++++..+..+..   
T Consensus        35 ~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~  104 (337)
T 1pby_B           35 TPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--------RVKSLFGAALSPDGKTLAIYESPVR  104 (337)
T ss_dssp             CCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--------EEECTTCEEECTTSSEEEEEEEEEE
T ss_pred             CccceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc--------ccccccceEECCCCCEEEEEecccc
Confidence            5788999  7888765 555668899999998887433222111100        0011223344445544443321   


Q ss_pred             -----c--cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          111 -----T--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       111 -----~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                           .  ....+.+|+..+.   +.++.+ .. ...+.+++|+|++++|+++ ++.|.+||+. .++....+..     
T Consensus       105 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~-~~-~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~~-----  172 (337)
T 1pby_B          105 LELTHFEVQPTRVALYDAETL---SRRKAF-EA-PRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKPI-----  172 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTT---EEEEEE-EC-CSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEECS-----
T ss_pred             cccccccccCceEEEEECCCC---cEEEEE-eC-CCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeeec-----
Confidence                 0  2467889998776   555555 22 4467889999999988888 6789999998 5555544421     


Q ss_pred             CccCCCeeEEEEecCCCCeEEEEE-cCC-----------------------eEEEEECCcccccccchhhhccccccCCC
Q 014644          184 DDLTEVITSAEFHPIYCNLLAYSS-SRG-----------------------FVRLVDMRQSALCDHSARILRDAAESHGS  239 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l~s~~-~d~-----------------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~  239 (421)
                      ..+..   .+.|+|++ ..++..+ .++                       .|.+||+.+++..   ...+.        
T Consensus       173 ~~~~~---~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~--------  237 (337)
T 1pby_B          173 QSWEA---ETYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVR--------  237 (337)
T ss_dssp             TTTTT---TTBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEE--------
T ss_pred             cccCC---CceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecC--------
Confidence            11112   23688998 5444333 333                       4688998876532   01111        


Q ss_pred             cccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644          240 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  319 (421)
Q Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  319 (421)
                           .+...+..++|+|||++++++ ++.|++||+.+ ++.+..+..+...                .+++|+|+|++|
T Consensus       238 -----~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l  294 (337)
T 1pby_B          238 -----IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY----------------YSVNVSTDGSTV  294 (337)
T ss_dssp             -----ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----------------CEEEECTTSCEE
T ss_pred             -----CCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----------------eeEEECCCCCEE
Confidence                 124567889999999999888 58999999986 7777666544332                589999999999


Q ss_pred             EEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          320 ATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      ++++.++.|++||+.++ .....+..+
T Consensus       295 ~~~~~~~~i~v~d~~~~-~~~~~~~~~  320 (337)
T 1pby_B          295 WLGGALGDLAAYDAETL-EKKGQVDLP  320 (337)
T ss_dssp             EEESBSSEEEEEETTTC-CEEEEEECG
T ss_pred             EEEcCCCcEEEEECcCC-cEEEEEEcC
Confidence            99999999999999987 444444433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=8.1e-17  Score=146.44  Aligned_cols=260  Identities=9%  Similarity=-0.009  Sum_probs=159.7

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCCCcEEEeecC-CceeEEeeecCCCCCcccccccccccceeeccCCCCcee--eeecc-
Q 014644           34 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH--GYHLE-  109 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-  109 (421)
                      ..+..++|  +|++++|++++.+ .|.+|++. ++++.........+....            +.+++++.+  +.... 
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~------------~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRA------------NDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGG------------GCTTSCCEEEEEEECSS
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCcc------------EEECCCCCEEEEEEecC
Confidence            46788999  7999999998888 99999997 666443322111122233            334444442  22221 


Q ss_pred             -----cc-----cccceeEEeecc-cceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeee
Q 014644          110 -----WT-----ENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  176 (421)
Q Consensus       110 -----~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~  176 (421)
                           ..     ..+.+.+|++.. +.....+..+...+...+.+++|+|||++|+++  .++.|++|+++..++.....
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~  184 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence                 10     245678998863 311122222212356679999999999988876  57899999997223222111


Q ss_pred             ecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CCeEEEEECC--cccccc--cchhhhccccccCCCccccccccc---
Q 014644          177 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA---  248 (421)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~~v~iwd~~--~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~---  248 (421)
                      ..   .+..|...+..++|+|+| +++++++. ++.|.+|++.  +++...  .....+..         -+.++..   
T Consensus       185 ~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~  251 (365)
T 1jof_A          185 SV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETG  251 (365)
T ss_dssp             EE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTS
T ss_pred             eE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCcccccc
Confidence            00   111234668999999999 88877764 7899999875  333210  00111111         0011122   


Q ss_pred             ---ceeEEE-EcCCCCEEEEecC--C-----eEEEEECCCCCcceeE---EeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          249 ---SISDIK-FANDGQHLLSRDY--M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       249 ---~v~~~~-~s~~~~~l~~~~~--~-----~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                         .+..++ |+|||++|++++.  +     .|.+|++...++....   ...+....               ..++|+|
T Consensus       252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp  316 (365)
T 1jof_A          252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSP  316 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEE
T ss_pred             cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecC
Confidence               578999 9999998876542  3     8999999632544321   22222211               4789999


Q ss_pred             ---CCCEEEEeeCC-CeEEEEecCCC
Q 014644          315 ---DGLHFATGSYS-NLLRIFSHGVG  336 (421)
Q Consensus       315 ---~~~~l~~~s~d-g~i~iwd~~~~  336 (421)
                         +|++|++++.+ +.|.+|+++..
T Consensus       317 ~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               89999988864 89999998764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=1.6e-17  Score=152.28  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=163.3

Q ss_pred             EEEEEcCCCCeEEEEeC-CCc--EEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           39 VRWCAAPNGSMFILSTN-DKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        39 v~~~~~~~~~~l~t~s~-d~~--v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      .+|  +|||++|+.++. ++.  |.+||+.+++...+                                           
T Consensus        41 ~~~--SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------------------------------   75 (388)
T 3pe7_A           41 KCF--TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------------------------------   75 (388)
T ss_dssp             CCB--CTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------------------------------
T ss_pred             ccC--CCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------------------------------
Confidence            678  799999998887 674  77778777653222                                           


Q ss_pred             eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                                       . .++...+..++|+|||+.|+.+ .++.|++||+. +++...+.       ..+...+....
T Consensus        76 -----------------t-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~-~g~~~~~~-------~~~~~~~~~~~  129 (388)
T 3pe7_A           76 -----------------T-EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA-TLEENVVY-------QVPAEWVGYGT  129 (388)
T ss_dssp             -----------------C-CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEE-------ECCTTEEEEEE
T ss_pred             -----------------e-eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECC-CCcceeee-------echhhcccccc
Confidence                             1 3444455567899999999998 88899999998 44444333       22333343333


Q ss_pred             --EecCCCCeEEEEE----------------------cCCeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644          195 --FHPIYCNLLAYSS----------------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       195 --~~p~~~~~l~s~~----------------------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                        ++|++ ..++...                      .+..|.+||+.+++..    .+...              ...+
T Consensus       130 ~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~--------------~~~~  190 (388)
T 3pe7_A          130 WVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST----VILQE--------------NQWL  190 (388)
T ss_dssp             EEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE----EEEEE--------------SSCE
T ss_pred             eeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE----EeecC--------------Cccc
Confidence              48998 7776432                      3467999999886532    22222              4568


Q ss_pred             eEEEEcC-CCCEEEEecC-------CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe
Q 014644          251 SDIKFAN-DGQHLLSRDY-------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  322 (421)
Q Consensus       251 ~~~~~s~-~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~  322 (421)
                      ..++|+| ||+.|+....       ..|.++|+.. +. ...+..+....             .+..++|+|||+.|+..
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-TN-MRKVKTHAEGE-------------SCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-CC-CEESCCCCTTE-------------EEEEEEECTTSSCEEEE
T ss_pred             cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-Cc-eEEeeeCCCCc-------------ccccceECCCCCEEEEE
Confidence            8999999 9998886532       2677777753 33 33333322100             11578999999987654


Q ss_pred             eC-CC----eEEEEecCCCCCce-eEEecCC---CCccceeeecCCcccccccceeeeec---------ccCc-ccCCC-
Q 014644          323 SY-SN----LLRIFSHGVGSAGG-ITVEAGK---NENRKPILQAAPRARRSSLSNLTRGL---------YRQA-HENSS-  382 (421)
Q Consensus       323 s~-dg----~i~iwd~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~---------~d~~-~iw~~-  382 (421)
                      +. ++    .|++||+.++.... ..+.++.   .......|+|+  |+     .|+...         .+.. .+|+. 
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd--g~-----~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD--GS-----DAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE--EC-----CC------------CCCCEEEEEETT
T ss_pred             ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC--CC-----cceeEeeeccccccCCCCEEEEEecc
Confidence            43 22    39999999874321 2222210   01233478888  43     455432         2223 55633 


Q ss_pred             CCcccccccccc-----------CeEEEEEccCCCeEEEec--CCceEEE
Q 014644          383 SGHHELSYNLSS-----------KLLHLAWHPTTNLIACAN--GNSLFFH  419 (421)
Q Consensus       383 ~~~~~~~~~~~~-----------~v~~~~~spd~~~la~~~--~~~~~i~  419 (421)
                      ++....+..+..           .+..++|+|||+.|+.++  .+...||
T Consensus       329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          329 NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            233333333433           478899999999998776  3444444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.79  E-value=9.8e-17  Score=144.97  Aligned_cols=249  Identities=10%  Similarity=0.042  Sum_probs=165.5

Q ss_pred             cccccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           27 LKSLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        27 ~~~~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      +..+.....+..+.|  +++++++ +++..++.|.+||..+++............-.   . ........+.+++++..+
T Consensus        82 ~~~~~~~~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~s~dg~~l  155 (353)
T 3vgz_A           82 TQAIHNDLKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE---E-VRPLQPRELVADDATNTV  155 (353)
T ss_dssp             EEEEEESSCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS---S-CCCCEEEEEEEETTTTEE
T ss_pred             EEEEecCCCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc---c-cCCCCCceEEECCCCCEE
Confidence            334444556788899  6888854 55566899999999988743332221111000   0 000013344455555544


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                      ..........+.+|+..+.   +.++.+ ..+...+.+++|+|++++|+++ .++.|.+||+. .++....+...   ..
T Consensus       156 ~~~~~~~~~~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~  227 (353)
T 3vgz_A          156 YISGIGKESVIWVVDGGNI---KLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DD  227 (353)
T ss_dssp             EEEEESSSCEEEEEETTTT---EEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CS
T ss_pred             EEEecCCCceEEEEcCCCC---ceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CC
Confidence            4444333456888998876   666666 4456668899999999999998 89999999998 55555544221   12


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      ++...+.+++|+|++ +.++.++ .++.|.+||+.+++..    ..+..               .....++|+|+|++++
T Consensus       228 ~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~  287 (353)
T 3vgz_A          228 GKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAY  287 (353)
T ss_dssp             SSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEE
T ss_pred             CCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEE
Confidence            345567889999999 7666555 4599999999887643    22222               1125699999999766


Q ss_pred             Ee-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644          264 SR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  326 (421)
Q Consensus       264 ~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg  326 (421)
                      .+ .. +.|.+||+.+ ++.+..+......                .+++|+|+|++|+++..++
T Consensus       288 v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred             EEECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence            54 34 9999999986 7777777654432                6899999999887776554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=5e-18  Score=168.60  Aligned_cols=261  Identities=10%  Similarity=0.033  Sum_probs=165.9

Q ss_pred             ccceeEEeecccceeeeeeeecCCCCc---ceEEEeecCCCCEEEEE-c---------CCcEEEEeCCCCceeeeeeecC
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~-~---------d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                      ++.+.+|+..++   ++.+.+ .+|..   .+.+++|||||++|+++ .         ++.|++||+. +++.....   
T Consensus        35 d~~i~~~~~~~g---~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~~~~~---  106 (719)
T 1z68_A           35 DNNIVLYNIETG---QSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEFVRGN---  106 (719)
T ss_dssp             TSCEEEEESSSC---CEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECCSS---
T ss_pred             CCCEEEEEcCCC---cEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCccccce---
Confidence            558999999887   666655 45544   38999999999999987 5         6899999998 45442111   


Q ss_pred             CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhh-ccccccCCCccccccccc---------c
Q 014644          180 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA---------S  249 (421)
Q Consensus       180 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~---------~  249 (421)
                        .+   ...+.+++|+||| +.|+++. ++.|++||+.++...    ++. ..+     ....+.++..         .
T Consensus       107 --~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~~~-----~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A          107 --EL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF----QITFNGR-----ENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             --CC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE----ECCCCCB-----TTTEEESSCCHHHHHHTTCS
T ss_pred             --ec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE----EEecCCC-----cCCeEcccccceeeeecccC
Confidence              11   2458889999999 8888875 789999999876532    111 110     0001112221         2


Q ss_pred             eeEEEEcCCCCEEEEecC--C---------------------------------eEEEEECCCCCcce--eEE------e
Q 014644          250 ISDIKFANDGQHLLSRDY--M---------------------------------NLKLWDIRMDSTPV--ATF------K  286 (421)
Q Consensus       250 v~~~~~s~~~~~l~~~~~--~---------------------------------~i~i~d~~~~~~~~--~~~------~  286 (421)
                      ..+++|+|||++|++++.  +                                 .|++||+.+ ++..  ..+      .
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~  249 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIA  249 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHH
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCC
Confidence            258999999999997642  1                                 788888875 4432  111      1


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC----CeEEEEe----cCCCCCceeEE----ecCCCCcc---
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV----EAGKNENR---  351 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~~---  351 (421)
                      .+...               +.+++|+||++++++....    ..|++||    +.++ .....+    .+|...+.   
T Consensus       250 ~~~~~---------------~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  313 (719)
T 1z68_A          250 SSDYY---------------FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFF  313 (719)
T ss_dssp             TSCEE---------------EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSS
T ss_pred             CCcce---------------EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEcccc
Confidence            12221               2689999998877774432    3488899    7665 333333    46777776   


Q ss_pred             --ceeeecCCcccccccceeeeecccCc-ccC--CC-CCccccccccccCeEEEEEccCCCeEEEecC------CceEEE
Q 014644          352 --KPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACANG------NSLFFH  419 (421)
Q Consensus       352 --~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~~~------~~~~i~  419 (421)
                        .+.|+|+  ++   .-.+++...++. .||  +. ++....+......|..+.++ +++.|+..+.      +...+|
T Consensus       314 ~~~~~~spd--g~---~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~  387 (719)
T 1z68_A          314 VSTPVFSYD--AI---SYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY  387 (719)
T ss_dssp             CCCCEECTT--SS---CEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred             CCccEECCC--CC---eEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence              7899988  43   112334556666 666  32 22333344445567787777 8887776653      346666


Q ss_pred             e
Q 014644          420 Y  420 (421)
Q Consensus       420 ~  420 (421)
                      .
T Consensus       388 ~  388 (719)
T 1z68_A          388 R  388 (719)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=4.1e-18  Score=164.96  Aligned_cols=227  Identities=8%  Similarity=0.026  Sum_probs=156.8

Q ss_pred             CCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCCCccC-CCeeEEEEecCCCCeEEEEEc---CC
Q 014644          137 HDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSS---RG  210 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~---d~  210 (421)
                      +..+|.+++|+|||+.||++ . |++++||+++ +++..++        ..+. ..+.+++|+|+  +++++++.   +.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~~~l--------t~~~~~~~~~~~~spd--~~l~~~~~~~g~~   88 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGETVKL--------NREPINSVLDPHYGVG--RVILVRDVSKGAE   88 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEEEEC--------CSSCCSEECEECTTCS--EEEEEEECSTTSC
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCcEee--------ecccccccccccCCCC--eEEEEeccCCCCc
Confidence            35579999999999999986 4 9999999986 5554433        3344 57999999998  57776665   45


Q ss_pred             eEEEEECCc--ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE--EEEecCCeEEEEECCCCCcceeEEe
Q 014644          211 FVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--LLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       211 ~v~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      ..++|.+..  ....    ..+..              ...+...+|+|||+.  ++++..+.+.+||+.+ ++......
T Consensus        89 ~~~l~~~~~~~~g~~----~~l~~--------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~l~~  149 (582)
T 3o4h_A           89 QHALFKVNTSRPGEE----QRLEA--------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRELAR  149 (582)
T ss_dssp             CEEEEEEETTSTTCC----EECTT--------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEEEEE
T ss_pred             ceEEEEEeccCCCcc----ccccC--------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEEeec
Confidence            566665543  2111    11111              112345688888764  4444556666999986 65444333


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC----CeEEEEecCCCCCceeEEecCCCCccceeeecCCccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR  362 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (421)
                      .+.                  .+++|+|||++|++++.+    +.|++||+.++.  ...+..|...+..++|+|+  |+
T Consensus       150 ~~~------------------~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpD--G~  207 (582)
T 3o4h_A          150 LPG------------------FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPG--MK  207 (582)
T ss_dssp             ESS------------------CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTT--SC
T ss_pred             CCC------------------ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCC--CC
Confidence            222                  378999999999988876    789999998763  3467888888999999999  44


Q ss_pred             ccccceeeeecccCc---ccCCCC-CccccccccccCeEEEE--------EccCCCeEEEec-CCceEEEe
Q 014644          363 RSSLSNLTRGLYRQA---HENSSS-GHHELSYNLSSKLLHLA--------WHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       363 ~~~~~~l~~g~~d~~---~iw~~~-~~~~~~~~~~~~v~~~~--------~spd~~~la~~~-~~~~~i~~  420 (421)
                           .|+++..++.   .+|+.. +......++...+..++        |+|||.++++++ ++.+.+|.
T Consensus       208 -----~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          208 -----VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             -----EEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             -----EEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence                 7887777873   556322 22224445666666667        999998777777 56688886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=1.6e-16  Score=156.27  Aligned_cols=228  Identities=11%  Similarity=-0.021  Sum_probs=137.1

Q ss_pred             cCCCCE-EEEE--cCCcEEEEeCCC-C-ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----------Ce
Q 014644          147 NSDCET-FVSA--DDLRINLWNLEI-S-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----------GF  211 (421)
Q Consensus       147 ~~~~~~-l~s~--~d~~i~lwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----------~~  211 (421)
                      ||||+. |+.+  .+..|.+|++.. + +....+..   .....|...+.+++|+||| +.|++++.+          ..
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTP---VSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSC---CCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccC---CccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeE
Confidence            499998 7776  355566666540 1 22222110   0001156678899999999 889888876          58


Q ss_pred             EEEEECCc------ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C--------CeEEEEECC
Q 014644          212 VRLVDMRQ------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIR  276 (421)
Q Consensus       212 v~iwd~~~------~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--------~~i~i~d~~  276 (421)
                      |++||+.+      +...    .+...             +...+..++|+|||++|+..+ +        ..|++||+.
T Consensus       163 i~~~~~~~~~~~~~~~~~----~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVR----ELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EEEEETTSTTTTCGGGSE----ESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             EEEEECCCCccccCCcee----EEEec-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            99999987      4321    11101             145678899999999998654 2        379999997


Q ss_pred             CCC---cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC--eEEEEecCCCCCceeEEecCCCC--
Q 014644          277 MDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEAGKNE--  349 (421)
Q Consensus       277 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~--  349 (421)
                      ..+   +.......+...+               ..++|+|||+++++++.++  .|++||+.++ .....+..+...  
T Consensus       226 ~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~  289 (662)
T 3azo_A          226 EDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAG  289 (662)
T ss_dssp             TTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSC
T ss_pred             CCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecccccccccC
Confidence            324   3333333333322               6899999999888888888  6666666554 333333333222  


Q ss_pred             ------ccceeeecCCcccccccceeeeecccCc-ccC--CC-CCccccccccccCeEEEEEccCCCeEE--EecCC---
Q 014644          350 ------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIA--CANGN---  414 (421)
Q Consensus       350 ------~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~-~~~~~~~~~~~~~v~~~~~spd~~~la--~~~~~---  414 (421)
                            +..++++++  ++     .++++.. +. +||  +. ++....+..+...+..+ |++++..++  +++.+   
T Consensus       290 p~w~~~~~~~~~~~~--~~-----~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~  360 (662)
T 3azo_A          290 PLWTPGMRWFAPLAN--GL-----IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAY  360 (662)
T ss_dssp             CCCSTTCCSEEECTT--SC-----EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEE
T ss_pred             ccccccCceEeEeCC--CE-----EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCC
Confidence                  345666665  33     7777777 77 999  32 33344444555666665 255555444  33433   


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .++.++
T Consensus       361 ~i~~~d  366 (662)
T 3azo_A          361 EVVELD  366 (662)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            355544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=1.8e-15  Score=137.58  Aligned_cols=270  Identities=9%  Similarity=-0.039  Sum_probs=150.8

Q ss_pred             eEEEEeCC--CcEEEeec--CCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeec-c
Q 014644           49 MFILSTND--KTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG-N  123 (421)
Q Consensus        49 ~l~t~s~d--~~v~lwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~  123 (421)
                      ++++|+..  +.|.+|++  .++++..+.......          ...+..+++++++.++.....+   .+.+|++. +
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~----------~~~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~   70 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQ----------DEPISWMTFDHERKNIYGAAMK---KWSSFAVKSP   70 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCT----------TCCCSEEEECTTSSEEEEEEBT---EEEEEEEEET
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCC----------CCCCcEEEECCCCCEEEEEccc---eEEEEEECCC
Confidence            34555543  56888775  455554443211010          0123344555666655554443   68899886 4


Q ss_pred             cceeeeeeeec-CCCCcceEEEeecCCCCE--EEEE--------------cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          124 SVHARCQKVYP-HAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       124 ~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~--l~s~--------------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      +   +..+... ..+ +.+..++|+|+|++  ++++              .++++.+|++...++....+....   ..+
T Consensus        71 g---~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~  143 (365)
T 1jof_A           71 T---EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQE  143 (365)
T ss_dssp             T---EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCT
T ss_pred             C---CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCC
Confidence            4   3332220 111 23567899999995  4343              478999999974444433321100   124


Q ss_pred             CCCeeEEEEecCCCCeEEEEE-cCCeEEEEECC-cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      ...+.+++|+|+| ++|+++. .++.|++||+. +++...  ...+..           ..+...+..++|+|||+++++
T Consensus       144 ~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          144 NTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEEECTTSSEEEE
T ss_pred             CCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeEECCCCCEEEE
Confidence            4678999999999 8777766 46899999998 554210  011110           011345889999999999887


Q ss_pred             ec-C-CeEEEEECCC-CCccee---EEeeccCcccccccccCCC---cceeeeEEE-EcCCCCEEEEeeCC-C-----eE
Q 014644          265 RD-Y-MNLKLWDIRM-DSTPVA---TFKIHEHLRPKLCDLYNND---SIFDKFECS-VSGDGLHFATGSYS-N-----LL  328 (421)
Q Consensus       265 ~~-~-~~i~i~d~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~sp~~~~l~~~s~d-g-----~i  328 (421)
                      ++ . +.|.+|++.. .++...   .+........     .++.   ..+.+..++ |+|||++|++++.+ +     .|
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP-----DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-----CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC-----CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence            64 3 8999998753 133321   1211100000     0000   000126899 99999998876643 2     89


Q ss_pred             EEEecCCCCCcee---EEecCCCCccceeeec
Q 014644          329 RIFSHGVGSAGGI---TVEAGKNENRKPILQA  357 (421)
Q Consensus       329 ~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~  357 (421)
                      .+|++...+....   ....+......++++|
T Consensus       285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            9999973223322   1223444455666666

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=3.5e-16  Score=141.04  Aligned_cols=220  Identities=10%  Similarity=0.056  Sum_probs=143.0

Q ss_pred             cEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           35 KINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      .+..++|  +++++++ +++..++.|.+||+.+++...........                                  
T Consensus        44 ~~~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~----------------------------------   87 (349)
T 1jmx_B           44 GPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----------------------------------   87 (349)
T ss_dssp             SSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------
T ss_pred             CCceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------
Confidence            5788999  7888865 45567899999999887632211100000                                  


Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC------------CcEEEEeCCCCceeeeeeecCC
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKP  180 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d------------~~i~lwd~~~~~~~~~~~~~~~  180 (421)
                                           ......+..++|+|+|++|+++ .+            +.|.+||+.+ ++..+.+.   
T Consensus        88 ---------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~---  142 (349)
T 1jmx_B           88 ---------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVR---  142 (349)
T ss_dssp             ---------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSE---
T ss_pred             ---------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-ccccceee---
Confidence                                 0012346788999999999987 54            9999999983 22221110   


Q ss_pred             CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcccc-ccC--------------CCcc----
Q 014644          181 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESH--------------GSKS----  241 (421)
Q Consensus       181 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~-~~~--------------~~~~----  241 (421)
                        ...+...+.+++|+|++ + +++++  +.|.+||+.+++...    .+..+. ..+              ....    
T Consensus       143 --~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          143 --TFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             --EEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             --eccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEe
Confidence              01233468899999999 6 55543  349999998876432    111100 000              0000    


Q ss_pred             ------------------------------------cccccccceeEEEEcC-CCCEEEEecCCeEEEEECCCCCcceeE
Q 014644          242 ------------------------------------FFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       242 ------------------------------------~~~~~~~~v~~~~~s~-~~~~l~~~~~~~i~i~d~~~~~~~~~~  284 (421)
                                                          .+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~  290 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKA  290 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEE
Confidence                                                0001123566888999 99999888 78999999986 777766


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +......                .+++|+|+|++|++++.++.|++||+.++ .....+.
T Consensus       291 ~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~  333 (349)
T 1jmx_B          291 ANLDHTY----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIK  333 (349)
T ss_dssp             EECSSCC----------------CEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred             EcCCCCc----------------cceEECCCCCEEEEecCCCeEEEEecccc-ceeeeee
Confidence            6544332                58999999998888888999999999877 4444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=3e-14  Score=124.74  Aligned_cols=246  Identities=9%  Similarity=0.100  Sum_probs=165.3

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      ++-....++++  ++++.++++...++.|.+||.+......+..   .+                               
T Consensus        27 g~~~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~---~~-------------------------------   70 (286)
T 1q7f_A           27 GQFTEPSGVAV--NAQNDIIVADTNNHRIQIFDKEGRFKFQFGE---CG-------------------------------   70 (286)
T ss_dssp             TCBSCEEEEEE--CTTCCEEEEEGGGTEEEEECTTSCEEEEECC---BS-------------------------------
T ss_pred             CccCCCceEEE--CCCCCEEEEECCCCEEEEECCCCcEEEEecc---cC-------------------------------
Confidence            34456889999  7889988888899999999977432221110   00                               


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEee-cCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                            ...++...+..+++ .++++++++. . ++.|.+||..  ++.+..+.      ..+.
T Consensus        71 ----------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~------~~~~  120 (286)
T 1q7f_A           71 ----------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATIL  120 (286)
T ss_dssp             ----------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTC
T ss_pred             ----------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEec------CccC
Confidence                                  00245556889999 5788877776 4 8999999954  44444431      2234


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..+.+++++|++ +++++...++.|.+||... ...    ..+..           ..+...+..++++|+|+++++...
T Consensus       121 ~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          121 QHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-NVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             SCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCceEEEEeCCC-CEEEEECCCCEEEEEcCCC-CEE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECC
Confidence            568999999999 8777777889999999653 221    11211           011345789999999997777665


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC-eEEEEecCCCCCceeEEec
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~  345 (421)
                       +.|++||..  ++.+..+.......             ...+++++|+|+++++...++ .|++|+.. + .....+..
T Consensus       184 ~~~i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~  246 (286)
T 1q7f_A          184 AHCVKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALES  246 (286)
T ss_dssp             GTEEEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEE
T ss_pred             CCEEEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcc
Confidence             899999974  55555554332100             116899999999888888776 99999954 3 22222221


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +.                                            ....+..++++|+|+++++..++.+++|+
T Consensus       247 ~~--------------------------------------------~~~~~~~i~~~~~g~l~vs~~~~~v~v~~  277 (286)
T 1q7f_A          247 KV--------------------------------------------KHAQCFDVALMDDGSVVLASKDYRLYIYR  277 (286)
T ss_dssp             SS--------------------------------------------CCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             cC--------------------------------------------CCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence            10                                            01235688999999888776677799886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=3e-15  Score=148.86  Aligned_cols=274  Identities=8%  Similarity=0.022  Sum_probs=162.2

Q ss_pred             eccCCCCceeeeecccccccceeEEeecccceeeeeeeecCCCCcc-----eEEEeecCCCCEEEEE-cC---------C
Q 014644           95 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN-----INSISNNSDCETFVSA-DD---------L  159 (421)
Q Consensus        95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~-~d---------~  159 (421)
                      .+.+.+++.++..+    ++.+.+|+..++   ++...+ .+|...     ...++|||||++|+.+ .+         +
T Consensus        21 ~~~w~~dg~~~~~~----~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ----ENNILVFNAEYG---NSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CEEECSSSEEEEEE----TTEEEEEETTTC---CEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccEECCCCcEEEEc----CCcEEEEECCCC---ceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            44555666666654    467899999887   565656 666543     2347889999999997 65         5


Q ss_pred             cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCC
Q 014644          160 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  239 (421)
Q Consensus       160 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~  239 (421)
                      .+.+||+. +++...        +..|...+..++||||| +.|+.+ .++.|++||+.++....   -...++     .
T Consensus        93 ~~~~~d~~-~~~~~~--------l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~---lt~~g~-----~  153 (740)
T 4a5s_A           93 SYDIYDLN-KRQLIT--------EERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYR---ITWTGK-----E  153 (740)
T ss_dssp             EEEEEETT-TTEECC--------SSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEE---CCSCCB-----T
T ss_pred             EEEEEECC-CCcEEE--------cccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEE---EcCCCC-----c
Confidence            67799998 455432        35677789999999999 888887 57899999998765320   011110     0


Q ss_pred             cccccccc---------cceeEEEEcCCCCEEEEec-C-C-----------------------------------eEEEE
Q 014644          240 KSFFTEII---------ASISDIKFANDGQHLLSRD-Y-M-----------------------------------NLKLW  273 (421)
Q Consensus       240 ~~~~~~~~---------~~v~~~~~s~~~~~l~~~~-~-~-----------------------------------~i~i~  273 (421)
                      ...+.++.         .....+.|||||++|+..+ + .                                   .|++|
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            00111111         2234689999999998763 2 3                                   34555


Q ss_pred             ECCC---CCc-ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC----CCeEEEEecCCCCC-----ce
Q 014644          274 DIRM---DST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSA-----GG  340 (421)
Q Consensus       274 d~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~----dg~i~iwd~~~~~~-----~~  340 (421)
                      |+.+   ... ....+.....       ....+.  -+..++|+|||+.++....    +..|++||+.++..     ..
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~-------~~~~~~--~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPAS-------MLIGDH--YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHH-------HHTSCE--EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             ECCCCCCCCcceEEEecCCcc-------CCCCCe--EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence            5542   110 1111211000       000011  1368999999997665532    34799999998741     12


Q ss_pred             eEE--ecCCCCcc-----ceeeecCCcccccccceee-ee-cccCc-ccC--C-CCCccccccccccCeEEEEEccCCCe
Q 014644          341 ITV--EAGKNENR-----KPILQAAPRARRSSLSNLT-RG-LYRQA-HEN--S-SSGHHELSYNLSSKLLHLAWHPTTNL  407 (421)
Q Consensus       341 ~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-~g-~~d~~-~iw--~-~~~~~~~~~~~~~~v~~~~~spd~~~  407 (421)
                      ..+  ..|...+.     .+.|+|+  |+     .|+ .. ..+|. .||  + .++....+......|..+. .+|++.
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspD--G~-----~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~  376 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLD--GN-----SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDY  376 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTT--SS-----EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSE
T ss_pred             EEeeeccCCceEccCcCCCceEcCC--CC-----EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCE
Confidence            222  56666655     7889998  44     444 44 45565 666  2 2333333333344565543 355776


Q ss_pred             EEEec
Q 014644          408 IACAN  412 (421)
Q Consensus       408 la~~~  412 (421)
                      |+..+
T Consensus       377 i~f~~  381 (740)
T 4a5s_A          377 LYYIS  381 (740)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.71  E-value=1.6e-14  Score=131.05  Aligned_cols=175  Identities=10%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             CCcceEEEeecCCCCEEEEE-cC----CcEEEEeCCCC-ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC
Q 014644          137 HDFNINSISNNSDCETFVSA-DD----LRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR  209 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d----~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d  209 (421)
                      +...+..++|+|++++|+++ .+    +.|.+|+++.. +....+.     ....+......+++  ++ ++|++++ .+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-----~~~~~~~~p~~~~~--dg-~~l~~~~~~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-----TQKTMGADPCYLTT--NG-KNIVTANYSG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE-----EEECSSSCEEEEEE--CS-SEEEEEETTT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee-----EeccCCCCcEEEEE--CC-CEEEEEECCC
Confidence            44567789999999999987 54    79999998743 3322221     11224455677777  77 6666666 68


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCc------c
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDST------P  281 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~------~  281 (421)
                      +.|.+|++...................+.   ....+...+.+++|+|+|+++++++ . +.|++|++.....      .
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l  196 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPD---KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKF  196 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSC---TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCC---ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence            89999999754322111111000000000   0111233468899999999776653 3 8999999875332      2


Q ss_pred             e-----eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          282 V-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       282 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      .     .........              ....++|+|+|++|++++ .++.|.+|++.++
T Consensus       197 ~~~~~~~~~~~~~~~--------------~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          197 LTKGTPEAFKVAPGS--------------GPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEEEEEEEEECCTTC--------------CEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             eecccccceecCCCC--------------CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            1     111111111              116899999999888777 5899999999865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=4.8e-14  Score=126.13  Aligned_cols=283  Identities=8%  Similarity=0.005  Sum_probs=170.9

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      -..+.+|++  +++++++++...++.+.+++.+.......   ....+                              ..
T Consensus        23 l~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------------~~   67 (329)
T 3fvz_A           23 PGQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQ---RGLGP------------------------------IE   67 (329)
T ss_dssp             CSCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSC---GGGCS------------------------------CC
T ss_pred             cCCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecc---ccccc------------------------------cc
Confidence            357899999  78999999888887665554433211000   00000                              01


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC--CCCCCccCCC
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEV  189 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~~  189 (421)
                      ...+.+|+..++   +.++.+..++-.....++++|+|+++++. .++.|++|+.......+..+...  +..-.++...
T Consensus        68 ~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~  144 (329)
T 3fvz_A           68 EDTILVIDPNNA---EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ  144 (329)
T ss_dssp             SCCEEEECTTTC---CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred             CCcEEEEECCCC---eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence            234666766555   44555534555678999999999988888 89999999987221133333110  0000234456


Q ss_pred             eeEEEEec-CCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEEec
Q 014644          190 ITSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD  266 (421)
Q Consensus       190 v~~~~~~p-~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~  266 (421)
                      ..+++++| ++ .++++.+ .++.|++||. .+...    ..+.......   .....+-.....++++|+ +.++++..
T Consensus       145 P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          145 PTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             EEEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred             CcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEEC
Confidence            88999999 66 7777776 6899999994 44332    2222100000   000112345789999998 66666665


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC------CCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      . +.|++||..+ ++.+..+.......             .+.+++|+|      +|+..++...+..|++|++.++ ..
T Consensus       216 ~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~  280 (329)
T 3fvz_A          216 ENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG-EI  280 (329)
T ss_dssp             TTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC-CE
T ss_pred             CCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC-eE
Confidence            5 8999999975 77777765432211             115788888      3332223334568999998876 32


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      ...+..            .                               .++...+..++++|+|.++++.. ++.|++
T Consensus       281 ~~~~~~------------~-------------------------------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~  317 (329)
T 3fvz_A          281 IDVFKP------------V-------------------------------RKHFDMPHDIVASEDGTVYIGDAHTNTVWK  317 (329)
T ss_dssp             EEEECC------------S-------------------------------SSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred             EEEEcC------------C-------------------------------CCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence            222210            0                               01134567899999997777666 567888


Q ss_pred             Ee
Q 014644          419 HY  420 (421)
Q Consensus       419 ~~  420 (421)
                      |+
T Consensus       318 ~~  319 (329)
T 3fvz_A          318 FT  319 (329)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=4.2e-16  Score=143.14  Aligned_cols=217  Identities=12%  Similarity=0.009  Sum_probs=128.8

Q ss_pred             EEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE-------------------EEEecCCCCe
Q 014644          143 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-------------------AEFHPIYCNL  202 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~p~~~~~  202 (421)
                      .+.|+|||+.|+.+ .++.|++||+. +++...+..       .+......                   +.|+|++ +.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~  155 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLE-TLEEQVIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SW  155 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECC-CCCcEEEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cc
Confidence            47899999999887 88899999998 444443331       11111111                   3467777 55


Q ss_pred             EEEE-----EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-------Ce
Q 014644          203 LAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-------MN  269 (421)
Q Consensus       203 l~s~-----~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-------~~  269 (421)
                      ++..     ..+..|.+||+.+++..    .+...              ...+..+.|+| +++.|+..+.       ..
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~--------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETGELE----VIHQD--------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR  217 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTCCEE----EEEEE--------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred             eeeeeeccCCCcceEEEEECCCCcEE----eeccC--------------CcccccceECCCCCCEEEEEecCCCCCCCce
Confidence            5543     35668999998876532    22122              45688999999 7887765432       25


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-----CeEEEEecCCCCCceeEEe
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~  344 (421)
                      |.+||+.. ++. ..+..+...             ..+..++|+|+|++|+.++.+     +.|++||+.++.. .....
T Consensus       218 l~~~d~~~-~~~-~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~  281 (396)
T 3c5m_A          218 MWLVNEDG-SNV-RKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMV  281 (396)
T ss_dssp             CEEEETTS-CCC-EESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEE
T ss_pred             EEEEECCC-Cce-eEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeee
Confidence            88888763 332 222222110             012578999999988777554     4599999987632 22221


Q ss_pred             cCCCCccceeeec-CCcccccccceeeeecc----------------cCc-ccCCC-CCcccccccccc-----------
Q 014644          345 AGKNENRKPILQA-APRARRSSLSNLTRGLY----------------RQA-HENSS-SGHHELSYNLSS-----------  394 (421)
Q Consensus       345 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~----------------d~~-~iw~~-~~~~~~~~~~~~-----------  394 (421)
                       ... .. ..|++ +  ++     .++.++.                +.. .+|+. ++....+..+..           
T Consensus       282 -~~~-~~-~~~s~~d--g~-----~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  351 (396)
T 3c5m_A          282 -MPP-CS-HLMSNFD--GS-----LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQI  351 (396)
T ss_dssp             -CCS-EE-EEEECSS--SS-----EEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSST
T ss_pred             -CCC-CC-CCccCCC--Cc-----eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccC
Confidence             111 22 77887 6  33     5554321                122 45532 222223333332           


Q ss_pred             CeEEEEEccCCCeEEEec
Q 014644          395 KLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       395 ~v~~~~~spd~~~la~~~  412 (421)
                      .+..++|+|||+.|+.++
T Consensus       352 ~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          352 THPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             TCCCCEECTTSSEEEEEE
T ss_pred             CCCCceEccCCCeEEEEe
Confidence            256789999999988776

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=3.6e-15  Score=146.65  Aligned_cols=206  Identities=10%  Similarity=-0.000  Sum_probs=129.0

Q ss_pred             CCcceEEEeecCCCCEEEEE-cC----------CcEEEEeCCCC-----ceeeeeeecCCCCCC-ccCCCeeEEEEecCC
Q 014644          137 HDFNINSISNNSDCETFVSA-DD----------LRINLWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIY  199 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d----------~~i~lwd~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~  199 (421)
                      |...+.+++|+|||+.|+++ .+          ..|++||+...     +.. +.+       . .+...+.+++|+|||
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l-------~~~~~~~~~~~~~SpDG  199 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL-------SDDAHRFVTGPRLSPDG  199 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES-------SCSCSSEECCCEECTTS
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE-------EecCCCcccCceECCCC
Confidence            66778899999999999987 55          58999999831     332 222       3 455678889999999


Q ss_pred             CCeEEEEEcC--------CeEEEEECC-cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C-
Q 014644          200 CNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-  268 (421)
Q Consensus       200 ~~~l~s~~~d--------~~v~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~-  268 (421)
                       +.|+.++.+        ..|++||+. ++... ....+...             +...+..++|+|||+++++++. + 
T Consensus       200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~~~-------------~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLLGG-------------PEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEEEE-------------TTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeCCC-------------CCceEcceEECCCCeEEEEECCCCC
Confidence             888887755        379999998 45110 00122222             2467889999999997766654 6 


Q ss_pred             -eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          269 -NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       269 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                       .|.+||+.+ ++.......+....       ......++..++|+|+++++++++. +.++||.++........+..+.
T Consensus       265 ~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~  335 (662)
T 3azo_A          265 WNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPW  335 (662)
T ss_dssp             CEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSC
T ss_pred             eEEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCC
Confidence             666677643 44333222221110       0000111257899999999999998 9999995543223456677776


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ..+..+. +++  +.   ...+++++.+.. .+|
T Consensus       336 ~~~~~~~-s~~--~~---~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          336 TEWAATL-TVS--GT---RAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CEEEEEE-EEE--TT---EEEEEEEETTEEEEEE
T ss_pred             CeEEEEE-ecC--CC---EEEEEEcCCCCCCEEE
Confidence            6665551 333  11   224444555544 666

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=2.5e-15  Score=137.65  Aligned_cols=241  Identities=8%  Similarity=-0.026  Sum_probs=147.5

Q ss_pred             eeeeeecCCCCcceEE-----EeecCCCCEEEEE-c-CCc--EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC
Q 014644          128 RCQKVYPHAHDFNINS-----ISNNSDCETFVSA-D-DLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  198 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~-~-d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  198 (421)
                      ..+..+ ..|......     .+|+|||++|+.+ . ++.  |.+||+. +++...+.       .++...+.++.|+|+
T Consensus        21 ~~~~~l-t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~lt-------~~~~~~~~~~~~spd   91 (388)
T 3pe7_A           21 AQVTRL-TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN-TQVATQLT-------EGRGDNTFGGFLSPD   91 (388)
T ss_dssp             CEEEEC-SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TCEEEECC-------CSSCBCSSSCEECTT
T ss_pred             cceEEe-cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC-CCceEEee-------eCCCCCccceEEcCC
Confidence            445555 566665655     8899999999987 5 674  8888887 45544432       445555557789999


Q ss_pred             CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE--EEEcCCCCEEEEe-----------
Q 014644          199 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD--IKFANDGQHLLSR-----------  265 (421)
Q Consensus       199 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~-----------  265 (421)
                      + +.|++++.++.|++||+.+++..    .++..+             ...+..  ..++|++++++..           
T Consensus        92 g-~~l~~~~~~~~l~~~d~~~g~~~----~~~~~~-------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           92 D-DALFYVKDGRNLMRVDLATLEEN----VVYQVP-------------AEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             S-SEEEEEETTTEEEEEETTTCCEE----EEEECC-------------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             C-CEEEEEeCCCeEEEEECCCCcce----eeeech-------------hhcccccceeECCCCCeeccccccCccccccc
Confidence            9 99999999999999999987532    222221             222322  3458999988742           


Q ss_pred             -----------cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcC-CCCEEEEeeCC------C
Q 014644          266 -----------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS------N  326 (421)
Q Consensus       266 -----------~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~s~d------g  326 (421)
                                 .. ..|++||+.+ ++.. .+..+...+               ..++|+| ||+.|+..+.+      .
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~~~---------------~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKT-GEST-VILQENQWL---------------GHPIYRPYDDSTVAFCHEGPHDLVDA  216 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTT-CCEE-EEEEESSCE---------------EEEEEETTEEEEEEEEECSCTTTSSC
T ss_pred             ccchhhhhhccCCcceEEEEECCC-CceE-EeecCCccc---------------cccEECCCCCCEEEEEEecCCCCCcc
Confidence                       12 6799999986 5543 333333322               6899999 99998877753      3


Q ss_pred             eEEEEecCCCCCceeEEecCC--CCccceeeecCCcccccccceeeeecc-cCc-----ccCCCC-Ccccccccccc---
Q 014644          327 LLRIFSHGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLY-RQA-----HENSSS-GHHELSYNLSS---  394 (421)
Q Consensus       327 ~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~~-d~~-----~iw~~~-~~~~~~~~~~~---  394 (421)
                      .|+++|+..+  ....+..+.  ..+....|+|+  |+     .|+..+. ++.     .+|+.. +..........   
T Consensus       217 ~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spd--g~-----~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~  287 (388)
T 3pe7_A          217 RMWLINEDGT--NMRKVKTHAEGESCTHEFWVPD--GS-----ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH  287 (388)
T ss_dssp             SEEEEETTSC--CCEESCCCCTTEEEEEEEECTT--SS-----CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred             eEEEEeCCCC--ceEEeeeCCCCcccccceECCC--CC-----EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence            7888887654  233343343  24667889988  44     4544332 222     344322 11111111111   


Q ss_pred             ---CeEEEEEccCCCeEEEec----------CCceEEEeC
Q 014644          395 ---KLLHLAWHPTTNLIACAN----------GNSLFFHYA  421 (421)
Q Consensus       395 ---~v~~~~~spd~~~la~~~----------~~~~~i~~~  421 (421)
                         ....++|+|||+.|+...          ...|++|+.
T Consensus       288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             EEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence               112237999999988642          446888863

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=3.6e-14  Score=140.52  Aligned_cols=240  Identities=8%  Similarity=-0.081  Sum_probs=158.0

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-c-CC----cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          135 HAHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      .+|...+..++|||||++|+.+ . +|    .|++||+. +++.....       . ....+.+++|+||| +.|+.++.
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~~-------~-~~~~~~~~~wspDg-~~l~~~~~  190 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV-------L-ERVKFSCMAWTHDG-KGMFYNAY  190 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE-------E-EEECSCCEEECTTS-SEEEEEEC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCccc-------c-cCcccceEEEEeCC-CEEEEEEE
Confidence            4565678899999999999986 4 33    89999998 45544321       1 11236789999999 88888887


Q ss_pred             CCe----------------EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec------
Q 014644          209 RGF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------  266 (421)
Q Consensus       209 d~~----------------v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------  266 (421)
                      ++.                |++|++.++.....  .++..           ..+...+..+.|+|||++|+...      
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  257 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccce--EEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence            765                99999987642211  11111           11234577899999999988652      


Q ss_pred             CCeEEEEECCC------CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC----CeEEEEecCCC
Q 014644          267 YMNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVG  336 (421)
Q Consensus       267 ~~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d----g~i~iwd~~~~  336 (421)
                      ...|++||+.+      .......+..+....                ...|+|+|+.|+..+..    +.|++||+.++
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            25799999864      122345555544432                23588999887766653    36999999876


Q ss_pred             CC-ceeEEecCCC--CccceeeecCCcccccccceeeeecccCc-ccC--C--CCCccccccccccCeEEEEEccCCCeE
Q 014644          337 SA-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S--SSGHHELSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       337 ~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~--~~~~~~~~~~~~~~v~~~~~spd~~~l  408 (421)
                      .. ....+..|..  .+..+.+.+.       ..++++...++. +||  +  .++....+..+...|..++++|+++.|
T Consensus       322 ~~~~~~~l~~~~~~~~~~~~~~~~~-------~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          322 EESKWKVLVPEHEKDVLEWVACVRS-------NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             CGGGCEEEECCCSSCEEEEEEEETT-------TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             CcccceeccCCCCCCeEEEEEEEcC-------CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence            32 2345555544  5666777644       237788888887 776  3  333333444446678899999999877


Q ss_pred             EEec-----CCceEEEe
Q 014644          409 ACAN-----GNSLFFHY  420 (421)
Q Consensus       409 a~~~-----~~~~~i~~  420 (421)
                      +...     ...++.|+
T Consensus       395 ~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          395 FYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEECSSCCCEEEEEE
T ss_pred             EEEEeCCCCCCEEEEEE
Confidence            6442     24688876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=3.3e-14  Score=127.38  Aligned_cols=230  Identities=11%  Similarity=0.012  Sum_probs=144.0

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----  209 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----  209 (421)
                      ..+...+.+++|++++++++++ .++.|.+||.+ +++.....       ..+...+.+++++|++ +++++...+    
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~-~~~~~~~~-------~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~  111 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-TKEIKRPF-------VSHKANPAAIKIHKDG-RLFVCYLGDFKST  111 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEE-------ECSSSSEEEEEECTTS-CEEEEECTTSSSC
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCC-CCcEEEEe-------eCCCCCcceEEECCCC-cEEEEeCCCCCCC
Confidence            4556667899999999988888 89999999998 44433322       1345679999999998 877776666    


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-------CeEEEEECCCCCcce
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-------MNLKLWDIRMDSTPV  282 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~i~i~d~~~~~~~~  282 (421)
                      +.|.+||..++...    ..+..           ......+..++++|+|+++++...       +.|..+|... ++ +
T Consensus       112 ~~i~~~d~~~~~~~----~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~-~~-~  174 (333)
T 2dg1_A          112 GGIFAATENGDNLQ----DIIED-----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RT-V  174 (333)
T ss_dssp             CEEEEECTTSCSCE----EEECS-----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CC-E
T ss_pred             ceEEEEeCCCCEEE----EEEcc-----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC-CE-E
Confidence            68999998875432    11111           001346889999999988887642       4455555542 33 3


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCCceeEE--------ecCCCCccce
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITV--------EAGKNENRKP  353 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~  353 (421)
                      ..+.......               ..++|+|+++.|+ +.+.++.|++|++.+.......+        .++ .....+
T Consensus       175 ~~~~~~~~~~---------------~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i  238 (333)
T 2dg1_A          175 TPIIQNISVA---------------NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC  238 (333)
T ss_dssp             EEEEEEESSE---------------EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred             EEeecCCCcc---------------cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence            3332211111               6899999998665 44567899999997432222111        111 234556


Q ss_pred             eeecCCcccccccceeeeecccCc-ccCCCCCcccccc-ccc------cCeEEEEEccCCCeEEEecC
Q 014644          354 ILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSY-NLS------SKLLHLAWHPTTNLIACANG  413 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~-~~~------~~v~~~~~spd~~~la~~~~  413 (421)
                      ++.++  +.     .+++...++. .+|+..+...... ...      ..+.+++|+||+..|++++.
T Consensus       239 ~~d~~--G~-----l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          239 CIDSD--DN-----LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEBTT--CC-----EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EECCC--CC-----EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            66665  33     5555545555 7774433222222 111      15889999999877766553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=1.5e-13  Score=120.93  Aligned_cols=236  Identities=10%  Similarity=0.011  Sum_probs=153.4

Q ss_pred             CCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ..+.....+++|+|+++ +++++ .++.|..|+.. ++  ...+       ..+...+.+++++|++ +++++...++.|
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~--~~~~-------~~~~~~~~~l~~~~dg-~l~v~~~~~~~i   92 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQ--LSPE-------MHPSHHQNGHCLNKQG-HLIACSHGLRRL   92 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SC--EEEE-------ESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CC--eEEE-------ECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence            34555678999999998 67777 89999999998 33  3333       3355678999999999 777776667899


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE----ec-----------C-CeEEEEECC
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD-----------Y-MNLKLWDIR  276 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-----------~-~~i~i~d~~  276 (421)
                      .+||..+++..    ...... .        ......+..++++|+|+++++    ++           + +.-.||.+.
T Consensus        93 ~~~d~~~g~~~----~~~~~~-~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           93 ERQREPGGEWE----SIADSF-E--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             EEECSTTCCEE----EEECEE-T--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             EEEcCCCCcEE----EEeecc-C--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            99999776532    111110 0        001235678999999998887    32           0 112444443


Q ss_pred             CCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc---eeEEecCCCCccce
Q 014644          277 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNENRKP  353 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~  353 (421)
                      ..++ +..+..+....               ..++|+|+++.+++.+.++.|++|++...+..   ...+..+......+
T Consensus       160 ~~g~-~~~~~~~~~~~---------------~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          160 PDGT-LSAPIRDRVKP---------------NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             TTSC-EEEEECCCSSE---------------EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred             CCCC-EEEeecCCCCC---------------ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence            3233 33333222211               68999999998877778899999999732232   22333445556678


Q ss_pred             eeecCCcccccccceeeeecccCc-ccCCCCCc-cccccccccCeEEEEE-ccCCCeEEEecCCceEEEe
Q 014644          354 ILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-HELSYNLSSKLLHLAW-HPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~-~~~~~~~~~~v~~~~~-spd~~~la~~~~~~~~i~~  420 (421)
                      ++.++  |+     ++++.  ++. .+|+..+. ......... +.+++| +|+++.|.+++.++++-++
T Consensus       224 ~~d~~--G~-----l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          224 RVDAG--GL-----IWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             EEBTT--SC-----EEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             EECCC--CC-----EEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence            88776  43     44444  444 77744333 333333444 899999 6899999999888877664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=4.1e-14  Score=139.66  Aligned_cols=238  Identities=6%  Similarity=-0.045  Sum_probs=149.0

Q ss_pred             CCCCcceEEEeecCCCCEEEEE------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          135 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      .+|...+..++|||||++||.+      ++.+|++||+. +++.+..     ..+...  ...+++|+||| +.|++++.
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~-----~~~~~~--~~~~~~wspDg-~~l~~~~~  187 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKV-----DVIEGG--KYATPKWTPDS-KGFYYEWL  187 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSS-----CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCC-----cccCcc--cccceEEecCC-CEEEEEEe
Confidence            4677789999999999999953      34689999998 4443310     011111  12678999999 88998888


Q ss_pred             CCe-------------EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C----eE
Q 014644          209 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M----NL  270 (421)
Q Consensus       209 d~~-------------v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~----~i  270 (421)
                      |..             |++|++.++.....  .++..           ..+...+..+.|+|||++|+..+. +    .|
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence            766             99999987653211  11111           112356789999999999887543 4    67


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee---CCCeEEEEecCCCCCc-eeEEecC
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG  346 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s---~dg~i~iwd~~~~~~~-~~~~~~~  346 (421)
                      ++++... ++ ...+..+....               ....+ ++|.+++...   .++.|++||+.++... ...+..+
T Consensus       255 ~~~~~~~-~~-~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  316 (695)
T 2bkl_A          255 YWKRPGE-KD-FRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE  316 (695)
T ss_dssp             EEECTTC-SS-CEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred             EEEcCCC-Cc-eEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence            7776543 33 44444444322               34555 5666444433   2588999999876321 2333333


Q ss_pred             --CCCccceeeecCCcccccccceeeeecccCc-ccC--C-CCCcccccccc-ccCeEEEEEccCCCeEEEec-----CC
Q 014644          347 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNL-SSKLLHLAWHPTTNLIACAN-----GN  414 (421)
Q Consensus       347 --~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~-~~~~~~~~~~~-~~~v~~~~~spd~~~la~~~-----~~  414 (421)
                        ...+..+.+. .  +     .++++...++. +||  + .++.......+ ...|..++++|+++.|+...     ..
T Consensus       317 ~~~~~l~~~~~~-~--~-----~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          317 DSSASLLSVSIV-G--G-----HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             CSSCEEEEEEEE-T--T-----EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CCCCeEEEEEEE-C--C-----EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence              3345666665 2  2     27788888888 888  3 23322222222 55677889999998877443     24


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .+++|+
T Consensus       389 ~v~~~d  394 (695)
T 2bkl_A          389 QIYKTS  394 (695)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            588876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=4.6e-13  Score=121.16  Aligned_cols=304  Identities=8%  Similarity=-0.029  Sum_probs=181.3

Q ss_pred             CCCCeEEEEe------CCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc--------
Q 014644           45 PNGSMFILST------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW--------  110 (421)
Q Consensus        45 ~~~~~l~t~s------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------  110 (421)
                      +++.++.+..      .|++|.+||..++++...... ..             .. .+.+++++.++.....        
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~-g~-------------~p-~i~~spdg~~lyv~~~~~~~~~~g   77 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT-AF-------------NG-HVQVSNDGKKIYTMTTYHERITRG   77 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC-CE-------------EE-EEEECTTSSEEEEEEEEETTSSSS
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC-CC-------------CC-ceEECCCCCEEEEEEecccccccC
Confidence            3455555443      478999999988874322111 11             11 4456666665555432        


Q ss_pred             ccccceeEEeecccceeeeeeeec--CC---CCcceEEEeecCCCCEEEEE-c--CCcEEEEeCCCCceeeee-eecCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYP--HA---HDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPS  181 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---h~~~v~~l~~~~~~~~l~s~-~--d~~i~lwd~~~~~~~~~~-~~~~~~  181 (421)
                      .....+.+||..+.   +.++.+.  ..   +......++++|||++|+++ .  +++|.+||+. ..+.+.. +.    
T Consensus        78 ~~~~~v~v~d~~t~---~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~----  149 (361)
T 2oiz_A           78 KRSDVVEVWDADKL---TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTA----  149 (361)
T ss_dssp             CEEEEEEEEETTTC---CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGG----
T ss_pred             CCCCEEEEEECcCC---cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEec----
Confidence            11346889988765   4444431  11   23456789999999999987 3  6899999999 4555544 31    


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc-ccccccc--hhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~--~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                          . .....+.+.|++...+++.+.||.+.+|++.. ++.....  ...+..             ...+ ..+.++|+
T Consensus       150 ----~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~  210 (361)
T 2oiz_A          150 ----A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-------------KDDP-IFIAPALD  210 (361)
T ss_dssp             ----G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-------------TTSC-BCSCCEEC
T ss_pred             ----C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-------------CCCc-eEEEeccc
Confidence                1 12233567887757888889999999999865 3221000  011111             1111 23344677


Q ss_pred             CCEEEEecC-CeEEEEECCCCCc-ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-----------C
Q 014644          259 GQHLLSRDY-MNLKLWDIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------S  325 (421)
Q Consensus       259 ~~~l~~~~~-~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-----------d  325 (421)
                      +..++..+. +.+.++|+..... ....+..........  ..   .......++|+|+++.++++..           .
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~--~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK--NW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT--TC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             CCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc--cc---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence            776665555 8999999864221 112221111000000  00   0000023789999888776543           3


Q ss_pred             CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CC--CccccccccccCeEEEE
Q 014644          326 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SS--GHHELSYNLSSKLLHLA  400 (421)
Q Consensus       326 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~--~~~~~~~~~~~~v~~~~  400 (421)
                      +.|.+||+.+. +....+..+.  ...++++|+  ++     +|++++. +. .+|+  .+  +.+............++
T Consensus       286 ~~v~viD~~t~-~~v~~i~~~~--p~~ia~spd--g~-----~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~  354 (361)
T 2oiz_A          286 AEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQ--RN-----LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ  354 (361)
T ss_dssp             SEEEEEETTTT-EEEEEEECTT--CCEEEEETT--TT-----EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred             ceEEEEECCCC-cEEEEEecCC--eeEEEECCC--CC-----EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence            58999999987 6677777776  889999998  44     6777666 66 9993  33  33333346677788999


Q ss_pred             EccCCC
Q 014644          401 WHPTTN  406 (421)
Q Consensus       401 ~spd~~  406 (421)
                      ++|||.
T Consensus       355 ~~p~G~  360 (361)
T 2oiz_A          355 FHPVGG  360 (361)
T ss_dssp             ECCCSC
T ss_pred             ecCCCC
Confidence            999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=1.1e-11  Score=108.87  Aligned_cols=274  Identities=8%  Similarity=-0.006  Sum_probs=177.8

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...+.++.+  ++++.++++...++.|.+||.. ++......                                      
T Consensus        14 ~~~~~~i~~--d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~--------------------------------------   52 (299)
T 2z2n_A           14 DTGPYGITV--SDKGKVWITQHKANMISCINLD-GKITEYPL--------------------------------------   52 (299)
T ss_dssp             SCCEEEEEE--CTTSCEEEEETTTTEEEEECTT-CCEEEEEC--------------------------------------
T ss_pred             CCCccceEE--CCCCCEEEEecCCCcEEEEcCC-CCeEEecC--------------------------------------
Confidence            457889998  7888888877778899999987 54222110                                      


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                            ..+...+.++++.+++.++++. .++.|..|+..  ++. ..+.     +......+.
T Consensus        53 ----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~-~~~~-----~~~~~~~~~  102 (299)
T 2z2n_A           53 ----------------------PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GII-KEYT-----LPNPDSAPY  102 (299)
T ss_dssp             ----------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEE-----CSSTTCCEE
T ss_pred             ----------------------CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcE-EEEe-----CCCcCCCce
Confidence                                  1223568889999999988888 78899999986  222 2221     122345688


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      ++++.|++ .++++...++.|..||. ++...     .+..           ......+..++++++|++.++... +.|
T Consensus       103 ~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A          103 GITEGPNG-DIWFTEMNGNRIGRITD-DGKIR-----EYEL-----------PNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             EEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             eeEECCCC-CEEEEecCCceEEEECC-CCCEE-----EecC-----------CCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            99999998 77777667889999998 44321     1111           001346789999999988887765 889


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      ..||. + ++... +.......             .+.+++++++|++.++...++.|.+||. ++......+..+...+
T Consensus       165 ~~~~~-~-g~~~~-~~~~~~~~-------------~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  227 (299)
T 2z2n_A          165 GRITE-S-GDITE-FKIPTPAS-------------GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARP  227 (299)
T ss_dssp             EEECT-T-CCEEE-EECSSTTC-------------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEEcC-C-CcEEE-eeCCCCCC-------------cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCc
Confidence            99998 4 54432 22111110             1268999999997777667889999998 5532222233344556


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCCCCCccccc--cccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ..+++.++  +.     .+++...++. ..|+..+.....  ......+.++++ +++++.++...+++..++
T Consensus       228 ~~i~~~~~--g~-----l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~  292 (299)
T 2z2n_A          228 HAITAGAG--ID-----LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLT  292 (299)
T ss_dssp             EEEEECST--TC-----EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred             eeEEECCC--CC-----EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence            66777665  33     4444434444 555333222221  123457889999 999988887777887765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=4.7e-13  Score=120.52  Aligned_cols=207  Identities=10%  Similarity=-0.029  Sum_probs=132.2

Q ss_pred             ceEEEeecCCCCEEEEE-cC---Cc--EEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----
Q 014644          140 NINSISNNSDCETFVSA-DD---LR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----  209 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d---~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----  209 (421)
                      .+..++|+|||+.|+.. .+   +.  |.+|++. +++...+.        .+.. +.+++|+|++ +.|+.++.+    
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~-~g~~~~l~--------~~~~-~~~~~wspdg-~~l~~~~~~~~~~  128 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLE-TLSSKKIL--------EAKN-IRSLEWNEDS-RKLLIVGFKRRED  128 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT-TTEEEEEE--------EESE-EEEEEECTTS-SEEEEEEECCCC-
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECC-CCceEEEE--------cCCC-ccceeECCCC-CEEEEEEccCCCc
Confidence            46789999999999886 33   34  7777887 45544433        2223 8999999999 888777642    


Q ss_pred             -----------------------CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          210 -----------------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       210 -----------------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                                             ..|.+||+.+++..    +.+.             . . .+..+.|+||| +++++.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----~~l~-------------~-~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----EEFE-------------K-P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             --------CCCC---------CEEEEEEEETTTTEEE----EEEE-------------E-E-TTCEEEEETTE-EEEEEE
T ss_pred             CCcEEEcccceeecCcccccCccceEEEEECCCCeEE----eeec-------------C-C-CcccccCCCCe-EEEEEe
Confidence                                   56888898776531    1111             1 2 56789999999 776653


Q ss_pred             C-C-------eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC--------CeEEE
Q 014644          267 Y-M-------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRI  330 (421)
Q Consensus       267 ~-~-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d--------g~i~i  330 (421)
                      . .       ...||.+.+ ++.. .+..+ ..                 ...++|+|++|+.++.+        ..|++
T Consensus       189 ~~~~~~~~~~~~~l~~~d~-~~~~-~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~  248 (347)
T 2gop_A          189 HREIIPQYFKFWDIYIWED-GKEE-KMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYI  248 (347)
T ss_dssp             CCCSSCCSSCCEEEEEEET-TEEE-EEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred             cccccccccccccEEEeCC-CceE-EeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEE
Confidence            2 1       335554442 5433 33332 21                 12339999998877744        46888


Q ss_pred             EecCCCCCceeEEecCCCCccc-eeeecCCcccccccceeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCe
Q 014644          331 FSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNL  407 (421)
Q Consensus       331 wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~  407 (421)
                      ||  ++ .....+..+...+.. +.|+ +       . .++++..++. +|| .. +.......+...|.+++|+|  .+
T Consensus       249 ~d--~~-~~~~l~~~~~~~~~~~~~~s-d-------g-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~  313 (347)
T 2gop_A          249 YD--GK-EVMGILDEVDRGVGQAKIKD-G-------K-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IV  313 (347)
T ss_dssp             EC--SS-CEEESSTTCCSEEEEEEEET-T-------E-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SE
T ss_pred             EC--CC-ceEeccccCCcccCCccEEc-C-------c-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cE
Confidence            88  33 434444555666665 7776 5       4 6778888888 898 43 23333444567799999999  56


Q ss_pred             EEEec
Q 014644          408 IACAN  412 (421)
Q Consensus       408 la~~~  412 (421)
                      +++++
T Consensus       314 ~~~~~  318 (347)
T 2gop_A          314 VYLKE  318 (347)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            55555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=4.2e-12  Score=113.59  Aligned_cols=229  Identities=14%  Similarity=0.129  Sum_probs=145.9

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      +...+.+++|  ++++++++++..++.|.+||.++++...+.                                      
T Consensus        43 ~~~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------   82 (333)
T 2dg1_A           43 KGLQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------------------------   82 (333)
T ss_dssp             SCCCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------------------------
T ss_pred             cCccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe--------------------------------------
Confidence            4456788899  688888788888899999998776532211                                      


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC----CcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                                             ..+...+.+++++|+|+++++. .+    +.|.+||.+ ++.....+.     ...+
T Consensus        83 -----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~  133 (333)
T 2dg1_A           83 -----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLST  133 (333)
T ss_dssp             -----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSS
T ss_pred             -----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCcc
Confidence                                   1234568999999999988887 66    689999987 343332221     0123


Q ss_pred             CCCeeEEEEecCCCCeEEEEEc------CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          187 TEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ...+.+++++|++ +++++...      .+.|..+|...++..    .....              ...+..++|+|+|+
T Consensus       134 ~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--------------~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          134 AYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEK  194 (333)
T ss_dssp             CCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSS
T ss_pred             CCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----EeecC--------------CCcccceEECCCCC
Confidence            4578999999998 77776543      245666665543321    11111              23578899999998


Q ss_pred             EEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          261 HLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       261 ~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      .|+.+ .. +.|.+||+...+..+..+......     .....   ..+..++++++|++.++...++.|.+||.. + .
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~~~---~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~  264 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFTGH---EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-Y  264 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECCSS---SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-C
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecCCC---CCCCceEECCCCCEEEEEcCCCEEEEECCC-C-C
Confidence            66544 44 899999996434433322100000     00000   012579999999988888788999999984 3 4


Q ss_pred             ceeEEecCCC------CccceeeecC
Q 014644          339 GGITVEAGKN------ENRKPILQAA  358 (421)
Q Consensus       339 ~~~~~~~~~~------~~~~~~~~~~  358 (421)
                      ....+..+..      .+..+++.++
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          265 PIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             EEEEEEcCCCccccccCcceEEECCC
Confidence            4444443332      5677888765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=6.1e-13  Score=121.95  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=146.9

Q ss_pred             EEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceee-------------ccCCCCcee
Q 014644           38 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN-------------EHNPPSFAH  104 (421)
Q Consensus        38 ~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~~~~~~  104 (421)
                      .+.|  +|++++|+.++.++.|.+||+.+++...+......       |.+....+..             ..+++++..
T Consensus        85 ~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~  155 (396)
T 3c5m_A           85 GGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSW  155 (396)
T ss_dssp             TCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             cceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-------cCCCCCEEEeccCCccccccccccccCCCCcc
Confidence            3778  79999999999999999999998875555432211       1111111111             234444444


Q ss_pred             eeeccc---ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE-cC------CcEEEEeCCCCceee
Q 014644          105 GYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISDQCF  173 (421)
Q Consensus       105 ~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~-~d------~~i~lwd~~~~~~~~  173 (421)
                      +.....   .....+.+|++.++   +.....  .+...+..+.|+| +++.|+.. .+      ..|.+|++. ++...
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g---~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~  229 (396)
T 3c5m_A          156 EKFAEFYHTNPTCRLIKVDIETG---ELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSNVR  229 (396)
T ss_dssp             HHHHHHHHTCCCEEEEEEETTTC---CEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCCCE
T ss_pred             eeeeeeccCCCcceEEEEECCCC---cEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCcee
Confidence            433321   22336777887765   443333  4566789999999 78877764 32      468888886 33322


Q ss_pred             eeeecCCCCCCcc-CCCeeEEEEecCCCCeEEEEEcC-----CeEEEEECCcccccccchhhhccccccCCCcccccccc
Q 014644          174 NIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  247 (421)
Q Consensus       174 ~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  247 (421)
                      .+.       ... ...+..++|+|++ +.|+.++.+     +.|++||+.+++..    .+...              .
T Consensus       230 ~l~-------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~--------------~  283 (396)
T 3c5m_A          230 KIK-------EHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM--------------P  283 (396)
T ss_dssp             ESS-------CCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC--------------C
T ss_pred             Eee-------ccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC--------------C
Confidence            221       111 2357889999999 777666543     45999999876532    11111              1


Q ss_pred             cceeEEEEcC-CCCEEEEec----------------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeE
Q 014644          248 ASISDIKFAN-DGQHLLSRD----------------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  309 (421)
Q Consensus       248 ~~v~~~~~s~-~~~~l~~~~----------------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                       ... +.|+| ||++++.+.                . ..|++||+.+ ++. ..+..+......    +..+....+..
T Consensus       284 -~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~~~~~~  355 (396)
T 3c5m_A          284 -PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQITHPH  355 (396)
T ss_dssp             -SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSSTTCCC
T ss_pred             -CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----ccccccCCCCC
Confidence             122 88999 999888642                2 6899999975 543 344443321000    00000000146


Q ss_pred             EEEcCCCCEEEEeeC-CCe--EEEEecCCC
Q 014644          310 CSVSGDGLHFATGSY-SNL--LRIFSHGVG  336 (421)
Q Consensus       310 ~~~sp~~~~l~~~s~-dg~--i~iwd~~~~  336 (421)
                      ++|+|+|+.|+..+. ++.  |+..++.++
T Consensus       356 ~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          356 PSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             CEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence            789999998887765 454  444555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.56  E-value=3.9e-12  Score=111.24  Aligned_cols=160  Identities=10%  Similarity=0.124  Sum_probs=114.2

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      +...+.+++++|+|+++++. .++.|.+||..  ++....+..     ..+...+.+++++|++ +++++...++.|++|
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~-----~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~  190 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC-----SKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVF  190 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC-----TTTCSSEEEEEECSSS-EEEEEEGGGTEEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC-----CCccCCcEEEEECCCC-CEEEEECCCCEEEEE
Confidence            44567899999999988887 78999999976  444443311     2344568999999998 777777789999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C-eEEEEECCCCCcceeEEeeccCccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~-~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      |..... .    ..+..           .++...+..++++++|+++++... + .|.+||..  ++.+..+..+.... 
T Consensus       191 ~~~g~~-~----~~~~~-----------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-  251 (286)
T 1q7f_A          191 NYEGQY-L----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-  251 (286)
T ss_dssp             ETTCCE-E----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-
T ss_pred             cCCCCE-E----EEEcc-----------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-
Confidence            975421 1    22211           011246789999999988888754 5 99999964  66666665543221 


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                                  .+.+++++|+|+++++ +.++.|++|++...
T Consensus       252 ------------~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          252 ------------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ------------CEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ------------cceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                        1158999999987766 67999999998653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.56  E-value=2.7e-12  Score=112.90  Aligned_cols=230  Identities=11%  Similarity=0.036  Sum_probs=150.0

Q ss_pred             ccccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           32 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +.....++.|  +++++ +++++..++.|..||..++ ...+                                      
T Consensus        26 ~~~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~--------------------------------------   64 (296)
T 3e5z_A           26 GFTWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSPE--------------------------------------   64 (296)
T ss_dssp             CCSSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEEE--------------------------------------
T ss_pred             CCccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEEE--------------------------------------
Confidence            3455678999  68887 7888888999999998774 2211                                      


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                              ..+...+.+++++++|+++++. .++.|.+||.. .++........   .......
T Consensus        65 ------------------------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~-~g~~~~~~~~~---~~~~~~~  116 (296)
T 3e5z_A           65 ------------------------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP-GGEWESIADSF---EGKKLNS  116 (296)
T ss_dssp             ------------------------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST-TCCEEEEECEE---TTEECCC
T ss_pred             ------------------------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC-CCcEEEEeecc---CCCCCCC
Confidence                                    2344568899999999988888 77899999996 34333222100   0111235


Q ss_pred             eeEEEEecCCCCeEEEE----Ec-------------CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          190 ITSAEFHPIYCNLLAYS----SS-------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~----~~-------------d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      +..++++|+| +++++.    +.             .+.|..++.. ++.     ..+..             +......
T Consensus       117 ~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~-------------~~~~~~g  176 (296)
T 3e5z_A          117 PNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPIR-------------DRVKPNG  176 (296)
T ss_dssp             CCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEEC-------------CCSSEEE
T ss_pred             CCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----EEeec-------------CCCCCcc
Confidence            6789999999 877763    21             3455555544 321     11111             1345689


Q ss_pred             EEEcCCCCEEEEecC-CeEEEEECCCCCcc---eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeE
Q 014644          253 IKFANDGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL  328 (421)
Q Consensus       253 ~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i  328 (421)
                      ++|+|+|+.+++... +.|++|++...+..   ...+..+....               .+++++++|++.++.  ++.|
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p---------------~~i~~d~~G~l~v~~--~~~v  239 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT---------------DGLRVDAGGLIWASA--GDGV  239 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC---------------CSEEEBTTSCEEEEE--TTEE
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC---------------CeEEECCCCCEEEEc--CCeE
Confidence            999999998866655 89999998632443   22221111111               579999999876665  8899


Q ss_pred             EEEecCCCCCceeEEecCCCCccceeee-cCCcccccccceeeeecccCc
Q 014644          329 RIFSHGVGSAGGITVEAGKNENRKPILQ-AAPRARRSSLSNLTRGLYRQA  377 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~d~~  377 (421)
                      .+|+.. + .....+..+.. +..++|. ++  ++     .|..++.++.
T Consensus       240 ~~~~~~-g-~~~~~~~~~~~-~~~~~f~~~d--~~-----~L~v~t~~~l  279 (296)
T 3e5z_A          240 HVLTPD-G-DELGRVLTPQT-TSNLCFGGPE--GR-----TLYMTVSTEF  279 (296)
T ss_dssp             EEECTT-S-CEEEEEECSSC-CCEEEEESTT--SC-----EEEEEETTEE
T ss_pred             EEECCC-C-CEEEEEECCCC-ceeEEEECCC--CC-----EEEEEcCCeE
Confidence            999986 3 55666666666 7888885 44  22     5666665554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.56  E-value=1.8e-12  Score=117.23  Aligned_cols=255  Identities=7%  Similarity=-0.036  Sum_probs=155.9

Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecCCCC
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                      ..+.+||..+.   +.+..+ ..+..+  .++|+||+++|+++ .          +++|.+||.. ..+....+.+.+..
T Consensus        31 ~~v~v~D~~t~---~~~~~i-~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~  103 (361)
T 2oiz_A           31 SRVHVYDYTNG---KFLGMV-PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKR  103 (361)
T ss_dssp             CEEEEEETTTC---CEEEEE-ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTB
T ss_pred             CeEEEEECCCC---eEEEEe-cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccc
Confidence            47888887766   555666 455554  89999999999986 3          5679999998 45555554322111


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEc--CCeEEEEECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCC
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                       ..+......++|+|+| ++|+++..  +++|.+||+.+++..    .. +..               .....+.+.|++
T Consensus       104 -~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~----~~~i~~---------------~~~~~v~~~p~~  162 (361)
T 2oiz_A          104 -VQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYV----EDVTAA---------------AGCWSVIPQPNR  162 (361)
T ss_dssp             -CCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEE----EEEGGG---------------TTEEEEEECTTS
T ss_pred             -cccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEE----EEEecC---------------CCcceeEEcCCC
Confidence             1123456789999999 88888764  589999999987643    22 222               122335677776


Q ss_pred             -CEEEEe-cCCeEEEEECCCCCcceeEEe------eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEE
Q 014644          260 -QHLLSR-DYMNLKLWDIRMDSTPVATFK------IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF  331 (421)
Q Consensus       260 -~~l~~~-~~~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iw  331 (421)
                       ..+++. .+|.+.+|++...++......      .....                ..+.++|++..++..+.++.|+++
T Consensus       163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~g~~~~~~~~~~~v~v~  226 (361)
T 2oiz_A          163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP----------------IFIAPALDKDKAHFVSYYGNVYSA  226 (361)
T ss_dssp             SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC----------------BCSCCEECSSEEEEEBTTSEEEEE
T ss_pred             CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc----------------eEEEecccCCEEEEEeCCCeEEEE
Confidence             344444 448888898865454442211      11111                123456778787878889999999


Q ss_pred             ecCCCCCce-eEEecC----------CCCccceeeecCCcccccccceeeeecc---------cC--c-ccCCC--CCcc
Q 014644          332 SHGVGSAGG-ITVEAG----------KNENRKPILQAAPRARRSSLSNLTRGLY---------RQ--A-HENSS--SGHH  386 (421)
Q Consensus       332 d~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~g~~---------d~--~-~iw~~--~~~~  386 (421)
                      |+....... ..+...          ......++++++  +.     .++....         ++  . .+|+.  .+.+
T Consensus       227 d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d--g~-----~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v  299 (361)
T 2oiz_A          227 DFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA--SG-----RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV  299 (361)
T ss_dssp             ECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT--TT-----EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred             EecCCCceecccccccCccccccccccCCeeEEEEecC--CC-----eEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence            997553221 111100          011223677776  22     3333221         12  2 44432  2333


Q ss_pred             ccccccccCeEEEEEccCCCeEEEecCCceEEEeC
Q 014644          387 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA  421 (421)
Q Consensus       387 ~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~~  421 (421)
                      .....+.  +..++|+|||++|++++.+.+.+|++
T Consensus       300 ~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~  332 (361)
T 2oiz_A          300 ARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDI  332 (361)
T ss_dssp             EEEECTT--CCEEEEETTTTEEEEECSSCEEEEEC
T ss_pred             EEEecCC--eeEEEECCCCCEEEEeCCCeEEEEEC
Confidence            3333333  89999999999999888888999974

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=9e-13  Score=131.04  Aligned_cols=237  Identities=8%  Similarity=-0.004  Sum_probs=144.7

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-c-C----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          135 HAHDFNINSISNNSDCETFVSA-D-D----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~-d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      .+|...+..++|||||++|+.+ . +    ..|++||+. +++.+...        .+...+.+++|+||  +.|+.++.
T Consensus       159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-tg~~~~~~--------~~~~~~~~~~wspD--~~l~~~~~  227 (741)
T 1yr2_A          159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA-DGKPLADE--------LKWVKFSGLAWLGN--DALLYSRF  227 (741)
T ss_dssp             ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT-TCCEEEEE--------EEEEESCCCEESTT--SEEEEEEC
T ss_pred             cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCCcc--------CCCceeccEEEECC--CEEEEEEe
Confidence            3455578899999999999986 3 2    359999998 44443321        11122357899999  45555555


Q ss_pred             CC--------------eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC------C
Q 014644          209 RG--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------M  268 (421)
Q Consensus       209 d~--------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~  268 (421)
                      ++              .|++|++.++.....  .++..           ..+...+..+.|+|||++|+....      .
T Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  294 (741)
T 1yr2_A          228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVN  294 (741)
T ss_dssp             CCC--------CCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCC
T ss_pred             cCcccccccccCCCCCEEEEEECCCCchhCE--EEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcc
Confidence            44              388899876542211  11221           111235789999999998886532      4


Q ss_pred             eEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC----CCeEEEEecCCCC-Ccee
Q 014644          269 NLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS-AGGI  341 (421)
Q Consensus       269 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~----dg~i~iwd~~~~~-~~~~  341 (421)
                      .|++||+.+ +  +....+..+....               ... ++|+|+.|+..+.    ++.|++||+.++. ....
T Consensus       295 ~l~~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~  357 (741)
T 1yr2_A          295 TVHVARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT  357 (741)
T ss_dssp             EEEEEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE
T ss_pred             eEEEEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE
Confidence            899999975 4  3144454443322               233 3588988887775    3459999988642 3344


Q ss_pred             EEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--C-CCCcccccc-ccccCeEEEEEccCCCeEEEec----
Q 014644          342 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSY-NLSSKLLHLAWHPTTNLIACAN----  412 (421)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~-~~~~~~~~~-~~~~~v~~~~~spd~~~la~~~----  412 (421)
                      .+..+...+..+.+..        ..++++...++. +||  + .++...... .....|..++++|+++.|+...    
T Consensus       358 l~~~~~~~l~~~~~~~--------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  429 (741)
T 1yr2_A          358 VVPESKDNLESVGIAG--------NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT  429 (741)
T ss_dssp             EECCCSSEEEEEEEEB--------TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred             EecCCCCeEEEEEEEC--------CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            4444544444455542        226788888888 888  3 233222222 2356688999999998776443    


Q ss_pred             -CCceEEEe
Q 014644          413 -GNSLFFHY  420 (421)
Q Consensus       413 -~~~~~i~~  420 (421)
                       ...+++|+
T Consensus       430 ~P~~i~~~d  438 (741)
T 1yr2_A          430 QPATVLALD  438 (741)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence             24688876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=5.2e-12  Score=125.01  Aligned_cols=261  Identities=10%  Similarity=-0.018  Sum_probs=153.5

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCC-----cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~-----~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      |+..+..++|  +|||++||.++.++     +|++||+.+++........  ..+.+++|++....+........... .
T Consensus       123 ~~~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~-~  197 (710)
T 2xdw_A          123 GTVALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGK-S  197 (710)
T ss_dssp             SCEEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSC-C
T ss_pred             CCEEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCcccc-c
Confidence            4446888999  79999999876654     8999999998854332211  11233444443333332222111000 0


Q ss_pred             eccc-c--cccceeEEeeccccee-eeeeeecCCCCcceEEEeecCCCCEEEEE-c-----CCcEEEEeCCC------Cc
Q 014644          107 HLEW-T--ENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEI------SD  170 (421)
Q Consensus       107 ~g~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-----d~~i~lwd~~~------~~  170 (421)
                      .+.. .  ....+.+|++.+.... ..+... ..|...+..+.|+|||++|+.+ .     +..|++||+..      ..
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence            0000 0  0124777888765221 122222 3355668899999999999875 4     56899999973      22


Q ss_pred             eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----CeEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          171 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      .....+       ..+...+.. .|+|+| ..|+..+..    +.|.+||+.++...  ..+.+..|            .
T Consensus       277 ~~~~~l-------~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~------------~  333 (710)
T 2xdw_A          277 LKWVKL-------IDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPE------------H  333 (710)
T ss_dssp             CCCEEE-------ECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC------------C
T ss_pred             cceEEe-------eCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCC------------C
Confidence            123322       334444544 488998 666655543    36999998875310  00111111            1


Q ss_pred             c-cceeEEEEcCCCCEEEEecC-C--eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe
Q 014644          247 I-ASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  322 (421)
Q Consensus       247 ~-~~v~~~~~s~~~~~l~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~  322 (421)
                      . ..+..++|++++.++++... +  .|++|++.+ ++.+..+..+...+               ..++++|++..++..
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCTTCSEEEEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCCCCCEEEEE
Confidence            1 25778899977777777643 4  577778754 66666666553322               578899998766533


Q ss_pred             -e---CCCeEEEEecCCCC
Q 014644          323 -S---YSNLLRIFSHGVGS  337 (421)
Q Consensus       323 -s---~dg~i~iwd~~~~~  337 (421)
                       +   ..+.|++||+.++.
T Consensus       398 ~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          398 FTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECSSCCCEEEEEETTSSS
T ss_pred             EeCCCCCCEEEEEECCCCc
Confidence             2   35789999998774

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=2e-11  Score=108.06  Aligned_cols=203  Identities=12%  Similarity=0.037  Sum_probs=129.2

Q ss_pred             cEEEEEEEEcCCCCeEEE-------EeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           35 KINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t-------~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      ...+++|  ++++.++++       +..++.|.+||..+++...+..   +                             
T Consensus        19 ~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~-----------------------------   64 (314)
T 1pjx_A           19 GAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---P-----------------------------   64 (314)
T ss_dssp             TCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---C-----------------------------
T ss_pred             CccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---c-----------------------------
Confidence            4578999  688888888       6778999999987765332211   0                             


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEEcCCcEEEEeCCCCceeeee-eecCCCCCCc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMDD  185 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~d~~i~lwd~~~~~~~~~~-~~~~~~~~~~  185 (421)
                                              .. .++...+.+++++++ ++++++...+.|.+||.+ . +.... ...   ....
T Consensus        65 ------------------------~~-~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g-~~~~~~~~~---~~~~  114 (314)
T 1pjx_A           65 ------------------------EV-NGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-G-TFEEIAKKD---SEGR  114 (314)
T ss_dssp             ------------------------EE-TTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-S-CEEECCSBC---TTSC
T ss_pred             ------------------------cc-CCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-C-CEEEEEecc---CCCc
Confidence                                    00 234456889999999 776766644478899987 3 33222 110   0011


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcC---------------CeEEEEECCcccccccchhhhccccccCCCcccccccccce
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d---------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                      ....+.+++++|++ +++++...+               +.|..||.. ++..    .....              ....
T Consensus       115 ~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~~  174 (314)
T 1pjx_A          115 RMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQFP  174 (314)
T ss_dssp             BCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESSE
T ss_pred             cccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCCc
Confidence            23458899999998 777766554               567777754 3321    11111              2346


Q ss_pred             eEEEEc----CCCCEEEEe-cC-CeEEEEECCCCCcc-----eeEEeecc-CcccccccccCCCcceeeeEEEEcCCCCE
Q 014644          251 SDIKFA----NDGQHLLSR-DY-MNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLH  318 (421)
Q Consensus       251 ~~~~~s----~~~~~l~~~-~~-~~i~i~d~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  318 (421)
                      ..++++    |+++.+..+ .. +.|.+||+...++.     ...+..+. ..               ...++++++|++
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~l  239 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNNL  239 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCCE
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCCE
Confidence            789999    999766544 44 89999997621332     11111111 11               157999999998


Q ss_pred             EEEeeCCCeEEEEecCCC
Q 014644          319 FATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       319 l~~~s~dg~i~iwd~~~~  336 (421)
                      .++...++.|.+||..++
T Consensus       240 ~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEEETTTEEEEECTTCB
T ss_pred             EEEEcCCCEEEEEcCCCC
Confidence            888878899999998755

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=1.2e-10  Score=110.96  Aligned_cols=317  Identities=8%  Similarity=-0.054  Sum_probs=190.6

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCceeE-EeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeec-
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG-  122 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-  122 (421)
                      +.+.++++...+++|.++|..+++.. .+..   ..            ....+.++++++++..++.  ++.+.++|.. 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~------------~p~~v~~SpDGr~lyv~~~--dg~V~viD~~~  227 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GY------------AVHISRLSASGRYLFVIGR--DGKVNMIDLWM  227 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---SS------------CEEEEEECTTSCEEEEEET--TSEEEEEETTS
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---CC------------CccceEECCCCCEEEEEcC--CCeEEEEECCC
Confidence            34456777788999999999998733 3322   11            2234456667766665543  4568888874 


Q ss_pred             -ccceeeeeeeecCCCCcceEEEeec----CCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCC---ccCC-Cee
Q 014644          123 -NSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-VIT  191 (421)
Q Consensus       123 -~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~---~~~~-~v~  191 (421)
                       +.   +.+..+ ... .....++|+    |||++++++  .+++|.++|.. +.+.++.+.+......   .|.. .+.
T Consensus       228 ~t~---~~v~~i-~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva  301 (567)
T 1qks_A          228 KEP---TTVAEI-KIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVA  301 (567)
T ss_dssp             SSC---CEEEEE-ECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             CCC---cEeEEE-ecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceE
Confidence             44   445555 222 246789999    699998886  78999999988 5566665533211111   1223 678


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-Ce
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MN  269 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~  269 (421)
                      .+..+++++.+++....+|.|.++|........  ...+..              ......+.|+|+|++++++. . +.
T Consensus       302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          302 AILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCCCe
Confidence            888999885566666677999999987643110  011111              23466889999999987764 3 89


Q ss_pred             EEEEECCCCCcceeEEee-ccCcccccccccCCCcceeeeEEE-EcCCCCEE-EEee-CCCeEEEEecCCCC------Cc
Q 014644          270 LKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHF-ATGS-YSNLLRIFSHGVGS------AG  339 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~sp~~~~l-~~~s-~dg~i~iwd~~~~~------~~  339 (421)
                      |.++|+.+ ++.+..+.. ...+-+.             .... ++|++..+ +++. .++.|.++|..+..      +.
T Consensus       366 V~ViD~~t-~kl~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          366 LVVIDTKE-GKLVAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             EEEEETTT-TEEEEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             EEEEECCC-CcEEEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            99999986 777666654 2211100             1233 57874444 4443 46899999998732      23


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeec---cc----Cc-ccCCCCCc-----cc--ccc---------ccccC
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGL---YR----QA-HENSSSGH-----HE--LSY---------NLSSK  395 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~---~d----~~-~iw~~~~~-----~~--~~~---------~~~~~  395 (421)
                      ...+.........+..+|+  ++     .|....   .|    .. .+++....     ..  ...         .....
T Consensus       432 v~~i~~~g~g~~~i~~~p~--~~-----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  504 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHPN--SQ-----YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR  504 (567)
T ss_dssp             EEEEECSCSCCCCEECCTT--CS-----EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred             EEEEecCCCCCEEEEeCCC--CC-----eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcc
Confidence            4555543322233445555  32     333322   11    12 44421111     10  111         12457


Q ss_pred             eEEEEEccCCCeEEEec------CCceEEEeC
Q 014644          396 LLHLAWHPTTNLIACAN------GNSLFFHYA  421 (421)
Q Consensus       396 v~~~~~spd~~~la~~~------~~~~~i~~~  421 (421)
                      +..+.|+|+|+.+.++.      ++.|.+++.
T Consensus       505 ~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          505 VVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             EEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             eEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence            88999999999877652      467888763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=2.3e-11  Score=105.21  Aligned_cols=230  Identities=7%  Similarity=-0.077  Sum_probs=144.6

Q ss_pred             ceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          140 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ...++++++++++++ +. .++.|.+|+.. ... ...+      ...+...+.++++++++ +++++.. ++.|.+||.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~-~~~~------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STG-TTVL------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EEC------CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCC-Ccc-cceE------eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence            678999999999887 64 78899999976 222 2211      01233467889999998 7555554 889999998


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      ......     .+..            .....+..++++++|+++++... +.|.+|+..+ .............     
T Consensus        95 ~~~~~~-----~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-----  151 (270)
T 1rwi_B           95 GSNNQT-----VLPF------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGLND-----  151 (270)
T ss_dssp             TCSCCE-----ECCC------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECCCCSCCS-----
T ss_pred             CCceEe-----eeec------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeeccccCCC-----
Confidence            764321     1111            01246789999999987777655 8899997653 2222111111111     


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccC
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ  376 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~  376 (421)
                                ..+++++|+|+++++...++.|++||.... ........+......+++.++  +.     .+++...++
T Consensus       152 ----------p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~--g~-----l~v~~~~~~  213 (270)
T 1rwi_B          152 ----------PDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEA--GT-----VYVTEHNTN  213 (270)
T ss_dssp             ----------CCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTT--CC-----EEEEETTTS
T ss_pred             ----------ceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECCC--CC-----EEEEECCCC
Confidence                      158999999997777777899999998765 222222223344566777665  33     555555555


Q ss_pred             c-ccCCCCCcccccc--ccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          377 A-HENSSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       377 ~-~iw~~~~~~~~~~--~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      . ..|+.........  .....+..++++|+|+++++.. ++.|.+|+
T Consensus       214 ~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          214 QVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             cEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            5 6663332222111  2235688999999999777766 67788875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.48  E-value=2.4e-11  Score=108.44  Aligned_cols=232  Identities=6%  Similarity=-0.091  Sum_probs=144.3

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      ....+.+. +++.+++. .++.|.+||.. ..+.+..+       . .......++++|++ +++++...++.|.+||+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~-t~~~~~~i-------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~  113 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDIN-TFKEVGRI-------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPK  113 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETT-TCCEEEEE-------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETT
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECc-ccEEEEEc-------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECC
Confidence            35666664 45555666 78999999998 45555544       1 23567899999998 655555489999999998


Q ss_pred             cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--CCeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      +++..    ..+... ..       .........+++ .+++++++..  ++.|.++|+.+ ++.+..+.....+     
T Consensus       114 t~~~~----~~i~~g-~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p-----  174 (328)
T 3dsm_A          114 TYEIT----GYIECP-DM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP-----  174 (328)
T ss_dssp             TTEEE----EEEECT-TC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB-----
T ss_pred             CCeEE----EEEEcC-Cc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc-----
Confidence            87643    222220 00       000114556777 4555555543  48999999987 7777776654433     


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeCC----------CeEEEEecCCCCCceeEEecC-CCCccceeeecCCcccccc
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSYS----------NLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRSS  365 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~d----------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  365 (421)
                                 ..++++|+|++++++..+          +.|.++|..++ .....+... ......++++|+  ++   
T Consensus       175 -----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d--~~---  237 (328)
T 3dsm_A          175 -----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGT--RD---  237 (328)
T ss_dssp             -----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTT--SC---
T ss_pred             -----------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecC--CC---
Confidence                       478999999977776654          78999999876 444444322 235678888887  33   


Q ss_pred             cceeeeecccCcccCCC--CCcccc-cccc-ccCeEEEEEccC-CCeEEEe----c-CCceEEEeC
Q 014644          366 LSNLTRGLYRQAHENSS--SGHHEL-SYNL-SSKLLHLAWHPT-TNLIACA----N-GNSLFFHYA  421 (421)
Q Consensus       366 ~~~l~~g~~d~~~iw~~--~~~~~~-~~~~-~~~v~~~~~spd-~~~la~~----~-~~~~~i~~~  421 (421)
                        .|..... ...+|+.  +..... .... ......++++|+ +.+.++.    . .+.+++|+.
T Consensus       238 --~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          238 --TLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             --EEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             --EEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence              4544443 2244422  222111 1111 356889999994 5555554    3 566888863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=7.7e-12  Score=111.71  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=141.2

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      -.....+++  +++++++++...++.|++||.+...  +..+......+                               
T Consensus        90 ~~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-------------------------------  136 (329)
T 3fvz_A           90 FYLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-------------------------------  136 (329)
T ss_dssp             CSSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-------------------------------
T ss_pred             cCCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-------------------------------
Confidence            346788999  7889988888889999999976532  11111000000                               


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecC-CCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCC---CCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS---NMD  184 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~---~~~  184 (421)
                                            ...++......++++| ++.++++.  .++.|++|+..  +..+..+.....   ...
T Consensus       137 ----------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~--g~~~~~~~~~g~~~~~~~  192 (329)
T 3fvz_A          137 ----------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS--GKFVTQWGEESSGSSPRP  192 (329)
T ss_dssp             ----------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT--SCEEEEECEECCSSSCCT
T ss_pred             ----------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC--CCEEEEeccCCCCCCCCC
Confidence                                  0024455688999999 78888886  48999999955  555544411100   001


Q ss_pred             ccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          185 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      ++.....+++++|++..++++...++.|++||..+++..    ..+..           ..+...+..++++| +..+++
T Consensus       193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~~~~~-----------~~~~~~~~~~~~~p-g~~~~~  256 (329)
T 3fvz_A          193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----REIKH-----------ASFGRNVFAISYIP-GFLFAV  256 (329)
T ss_dssp             TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECC-----------TTTTTCEEEEEEET-TEEEEE
T ss_pred             cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----EEEec-----------cccCCCcceeeecC-CEEEEe
Confidence            233457899999993277777778899999999866543    22211           11234677889998 433333


Q ss_pred             -------ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          265 -------RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       265 -------~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                             ... ..|++||+.+ ++.+..+.......            ....+++++|+|.++++...++.|++|++..
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~------------~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF------------DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC------------SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc------------CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                   222 5899999986 77777663211100            0126899999998888888899999999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.46  E-value=9.8e-11  Score=101.45  Aligned_cols=226  Identities=8%  Similarity=0.002  Sum_probs=146.2

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccc
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  124 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  124 (421)
                      ..+++|++++.|+.|.+||.++++............+.            .....+++..+...    ...+..++. ++
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~------------~~~~~pdG~ilvs~----~~~V~~~d~-~G   65 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN------------SVAATKAGEILFSY----SKGAKMITR-DG   65 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC------------EEEECTTSCEEEEC----BSEEEEECT-TS
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc------------CeEECCCCCEEEeC----CCCEEEECC-CC
Confidence            34689999999999999999888844333221111122            22333344444421    223555555 33


Q ss_pred             ceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c-CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCe
Q 014644          125 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  202 (421)
Q Consensus       125 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  202 (421)
                         +.+..+..+....+.++.+.++|+++++. . ++.|..+|.+  ++.+..+.... ....+......+++.++| ++
T Consensus        66 ---~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-~~  138 (276)
T 3no2_A           66 ---RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-NY  138 (276)
T ss_dssp             ---CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-CE
T ss_pred             ---CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-CE
Confidence               56666622233578899999999999997 5 7777777764  55554443321 112222345667889999 99


Q ss_pred             EEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcc
Q 014644          203 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP  281 (421)
Q Consensus       203 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~  281 (421)
                      +++...++.|..||.. ++..    ..+..              ...+.++...++|+.++++.+ +.|..+|..+ ++.
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G~~  198 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-NRI  198 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-CCE
T ss_pred             EEEecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-CcE
Confidence            9999999999999987 6643    22222              134566788899999998876 7899999986 888


Q ss_pred             eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee
Q 014644          282 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS  323 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s  323 (421)
                      +..+........         ....+.+++..++|.++++..
T Consensus       199 ~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          199 VRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCCCc---------cccccccceEcCCCCEEEEec
Confidence            888864321100         112336788899999887764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=4.6e-11  Score=103.34  Aligned_cols=238  Identities=7%  Similarity=-0.048  Sum_probs=145.0

Q ss_pred             cEEEEEEEEcCCCCeEE-EEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccc
Q 014644           35 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  113 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~-t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  113 (421)
                      ...++++  ++++++++ +.+.++.|.+||..+........ ....            .+..+.+.+++.......   .
T Consensus        25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~-~~~~------------~p~~i~~~~~g~l~v~~~---~   86 (270)
T 1rwi_B           25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF-NGLY------------QPQGLAVDGAGTVYVTDF---N   86 (270)
T ss_dssp             CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EECCC-CSCC------------SCCCEEECTTCCEEEEET---T
T ss_pred             CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceEee-CCcC------------CcceeEECCCCCEEEEcC---C
Confidence            5678888  78888777 55778999999976654322211 1111            122223333333222211   2


Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      ..+..++....   . ...+.......+..+++.++|+++++. .++.|.+|+... ......       .......+.+
T Consensus        87 ~~i~~~d~~~~---~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~-------~~~~~~~p~~  154 (270)
T 1rwi_B           87 NRVVTLAAGSN---N-QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVL-------PFTGLNDPDG  154 (270)
T ss_dssp             TEEEEECTTCS---C-CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEEC-------CCCSCCSCCC
T ss_pred             CEEEEEeCCCc---e-EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEee-------ccccCCCcee
Confidence            34555655433   1 122212333568999999999988887 788999997652 221111       1222345788


Q ss_pred             EEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          193 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      ++++|++ +++++...++.|.+||.......    .....             ....+..++++++|.++++... +.|.
T Consensus       155 i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v~  216 (270)
T 1rwi_B          155 VAVDNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQVV  216 (270)
T ss_dssp             EEECTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCEE
T ss_pred             EEEeCCC-CEEEEECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcEE
Confidence            9999998 77776667889999998765322    11001             1246789999999977777654 8899


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +|+... ... .........              .+.+++++|+|+++++...++.|+++++...
T Consensus       217 ~~~~~~-~~~-~~~~~~~~~--------------~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          217 KLLAGS-TTS-TVLPFTGLN--------------TPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EECTTC-SCC-EECCCCSCS--------------CEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEcCCC-Ccc-eeeccCCCC--------------CceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            999864 322 221111100              1268999999998888888999999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=5.6e-10  Score=97.91  Aligned_cols=274  Identities=4%  Similarity=-0.037  Sum_probs=173.6

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      ...+.++.+  ++++.++++...++.|.+||.. ++...+..                                      
T Consensus        19 ~~~p~~i~~--d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~--------------------------------------   57 (300)
T 2qc5_A           19 DSGPYGITS--SEDGKVWFTQHKANKISSLDQS-GRIKEFEV--------------------------------------   57 (300)
T ss_dssp             TCCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEEC--------------------------------------
T ss_pred             CCCcceeeE--CCCCCEEEEcCCCCeEEEECCC-CceEEEEC--------------------------------------
Confidence            456788888  7888888887788999999977 54322110                                      


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                            ..+...+.++++.++++++++. .++.|..||.. .. .. .+.     +......+.
T Consensus        58 ----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~-~~~-----~~~~~~~~~  107 (300)
T 2qc5_A           58 ----------------------PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FT-EYP-----LPQPDSGPY  107 (300)
T ss_dssp             ----------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EE-EEE-----CSSTTCCEE
T ss_pred             ----------------------CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-eE-Eec-----CCCCCCCCc
Confidence                                  1223457889999999988887 78899999987 33 22 221     122335688


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      ++++.+++ .++++...++.|..+|.. ++..     .+..           ......+..+++.++|++.++... +.|
T Consensus       108 ~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A          108 GITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-----EYDL-----------PNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             EEEECSTT-CEEEEETTTTEEEEECTT-SCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             cceECCCC-CEEEEccCCCeEEEECCC-CCEE-----EccC-----------CCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            99999998 777766668899999986 4322     1111           001346789999999997776654 889


Q ss_pred             EEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCc
Q 014644          271 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       271 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      ..+|. . ++... +.......             .+.+++++++|++.++....+.|.+|+. ++......+..+...+
T Consensus       170 ~~~~~-~-g~~~~-~~~~~~~~-------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  232 (300)
T 2qc5_A          170 GRITN-T-GKLEE-YPLPTNAA-------------APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARP  232 (300)
T ss_dssp             EEECT-T-CCEEE-EECSSTTC-------------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEECC-C-CcEEE-eeCCCCCC-------------CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence            99998 3 44332 32211110             1268999999987777667788999998 3322222233334445


Q ss_pred             cceeeecCCcccccccceeeeecccCc-ccCCCCCccccc--cccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          351 RKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      ..+++.++  +.     ..++...++. ..++..+.....  ......+.++++.++|++.++... ++..|+
T Consensus       233 ~~i~~d~~--g~-----l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          233 HAITAGKN--SE-----IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             EEEEECST--TC-----EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             eEEEECCC--CC-----EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence            56666655  33     4444433344 455333222211  122356889999999997776664 777665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.45  E-value=7.4e-12  Score=123.58  Aligned_cols=225  Identities=9%  Similarity=-0.029  Sum_probs=138.1

Q ss_pred             cccccEEEEEEEEcCCCCeEE-----EEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           31 EIEEKINRVRWCAAPNGSMFI-----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~-----t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      +|+..+..++|  +|||++||     .|+.+.+|++||+.+++...  .    .                          
T Consensus       118 ~~~~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~----~--------------------------  163 (695)
T 2bkl_A          118 DGTVSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--V----D--------------------------  163 (695)
T ss_dssp             SSCEEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--S----C--------------------------
T ss_pred             CCCEEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--C----c--------------------------
Confidence            45557889999  79999998     34445689999998876210  0    0                          


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCc-------------EEEEeCCCCce
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-------------INLWNLEISDQ  171 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~-------------i~lwd~~~~~~  171 (421)
                                                .+ ...  ....++|+|||+.|+.+ .|..             |++|++.+...
T Consensus       164 --------------------------~~-~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~  214 (695)
T 2bkl_A          164 --------------------------VI-EGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS  214 (695)
T ss_dssp             --------------------------CB-SCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred             --------------------------cc-Ccc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence                                      00 111  12578999999999987 6665             99999984332


Q ss_pred             e-eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC----eEEEEECCcccccccchhhhccccccCCCccccccc
Q 014644          172 C-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  246 (421)
Q Consensus       172 ~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  246 (421)
                      . ..+.     ....+...+.++.|+|+| ++|+.++.++    .|.+||..++..     ..+..             +
T Consensus       215 ~~~lv~-----~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l~~-------------~  270 (695)
T 2bkl_A          215 KDTVVH-----ERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-----RLLVK-------------G  270 (695)
T ss_dssp             GCEEEE-----CCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-----EEEEE-------------C
T ss_pred             hceEEE-----ecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-----EEeec-------------C
Confidence            1 1221     123455678899999999 7777776555    666666544321     12222             1


Q ss_pred             ccceeEEEEcCCCCEEEEec----CCeEEEEECCCCCcc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE
Q 014644          247 IASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA  320 (421)
Q Consensus       247 ~~~v~~~~~s~~~~~l~~~~----~~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~  320 (421)
                      ...+....+ ++|.+++.+.    .+.|.+||+.+ +..  ...+..+....             .+.+++|+ ++.+++
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~-------------~l~~~~~~-~~~lv~  334 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSA-------------SLLSVSIV-GGHLSL  334 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSC-------------EEEEEEEE-TTEEEE
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCC-------------eEEEEEEE-CCEEEE
Confidence            334455556 5666444443    27899999875 432  23333332110             11567887 777888


Q ss_pred             EeeCCCeEEEEecCCCCCceeEEecC-CCCccceeeecC
Q 014644          321 TGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA  358 (421)
Q Consensus       321 ~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~  358 (421)
                      +...|+..+||.+...+.....+..+ ...+..+.++++
T Consensus       335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d  373 (695)
T 2bkl_A          335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED  373 (695)
T ss_dssp             EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT
T ss_pred             EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC
Confidence            99999998888765322344445444 455666666665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.42  E-value=6.3e-11  Score=106.50  Aligned_cols=246  Identities=11%  Similarity=0.068  Sum_probs=141.2

Q ss_pred             ccEEEEEEEEcCCCCeEEEEeCC---C--cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCC-C------
Q 014644           34 EKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-S------  101 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~~l~t~s~d---~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~------  101 (421)
                      ..+..++|  +|+|++|+.++.+   +  .|.+|++.+++...+....  . +..++|++....+....... .      
T Consensus        59 ~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES--E-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            45778999  7999999988764   2  4778888887755544322  2 55555555444333322110 0      


Q ss_pred             ---ceeeeecc-c--ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cC------C-cEEEEeCC
Q 014644          102 ---FAHGYHLE-W--TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLE  167 (421)
Q Consensus       102 ---~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d------~-~i~lwd~~  167 (421)
                         ..+...|. +  .....+.+|++..+   +.++.+ .. . .+..++|+||| +++++ .+      . ...||.++
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTT---EEEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCC---eEEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence               00000000 0  01235677777665   443334 23 3 78899999999 77776 43      2 45666555


Q ss_pred             CCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC--------CeEEEEECCcccccccchhhhccccccCCC
Q 014644          168 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGS  239 (421)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~  239 (421)
                       .++...+.        .+ ..+..+  +|+| +.|+.++.+        ..|.+||  +++..    .+...       
T Consensus       207 -~~~~~~l~--------~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~-------  260 (347)
T 2gop_A          207 -DGKEEKMF--------EK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDE-------  260 (347)
T ss_dssp             -TTEEEEEE--------EE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTT-------
T ss_pred             -CCceEEec--------cC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----ecccc-------
Confidence             44443332        23 444444  9999 777777644        3677888  33211    22222       


Q ss_pred             cccccccccceeE-EEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          240 KSFFTEIIASISD-IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       240 ~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                            +...+.. +.|+ |+ ++++++. +.++|| +. .++..... .+...               +.+++|+|  .
T Consensus       261 ------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~-~~~~~---------------v~~~~~s~--~  312 (347)
T 2gop_A          261 ------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA-KGRHW---------------IMGFDVDE--I  312 (347)
T ss_dssp             ------CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE-CSSSE---------------EEEEEESS--S
T ss_pred             ------CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe-cCCCe---------------EEeeeeeC--c
Confidence                  2456775 8999 88 7777655 899999 87 35543333 33332               26889999  6


Q ss_pred             EEEEeeCCCeE-EEEecCCCCCceeEEecCCC
Q 014644          318 HFATGSYSNLL-RIFSHGVGSAGGITVEAGKN  348 (421)
Q Consensus       318 ~l~~~s~dg~i-~iwd~~~~~~~~~~~~~~~~  348 (421)
                      ++++++.++.. .||.+. + . ...+..|..
T Consensus       313 ~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n~  341 (347)
T 2gop_A          313 VVYLKETATRLRELFTWD-G-E-EKQLTDYND  341 (347)
T ss_dssp             EEEEEECSSSCCEEEEES-S-S-EEECCCTTS
T ss_pred             EEEEEcCCCChHHheEeC-C-c-EEEeccccH
Confidence            77777766654 677665 3 2 334454443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.41  E-value=2e-10  Score=102.48  Aligned_cols=179  Identities=12%  Similarity=-0.041  Sum_probs=114.7

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd  216 (421)
                      .....++++++++.+++. .++.|.+||.. +.+....+....  ..+.......+++ .++ .++++.. .++.|.++|
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID  158 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence            346788898888766666 79999999998 555554443211  0111124556777 333 4444433 489999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-----------CeEEEEECCCCCcceeEE
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----------MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------~~i~i~d~~~~~~~~~~~  285 (421)
                      +.+++..    ..+..              ......++++|+|++++++..           +.|.++|..+ ++....+
T Consensus       159 ~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~  219 (328)
T 3dsm_A          159 TETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQF  219 (328)
T ss_dssp             TTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEE
T ss_pred             CCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEE
Confidence            9987643    22222              224578899999997776532           5799999986 7766666


Q ss_pred             eeccC-cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce-eEEecCCCCccceeeecC
Q 014644          286 KIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEAGKNENRKPILQAA  358 (421)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  358 (421)
                      ..... ..               ..++++|+++.|+++..  .|.+||..++.... ..+.........+++.|+
T Consensus       220 ~~~~g~~p---------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~  277 (328)
T 3dsm_A          220 KFKLGDWP---------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN  277 (328)
T ss_dssp             ECCTTCCC---------------EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred             ecCCCCCc---------------eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence            54321 11               68999999999887765  89999998763321 112222344556777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=2.6e-10  Score=100.62  Aligned_cols=234  Identities=11%  Similarity=-0.009  Sum_probs=144.2

Q ss_pred             CCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          136 AHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..........|+|+++ +++++ .++.|..|+.. +.  ...+       ..+...+.+++++++| +++++...++.|.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~-------~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~  110 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVL-------LDATAFTNGNAVDAQQ-RLVHCEHGRRAIT  110 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEE-------EESCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEE-------eCCCCccceeeECCCC-CEEEEECCCCEEE
Confidence            3445577899999998 55666 88999999885 33  2222       2244668899999999 7666655668899


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE----ec--------------CCeEEEEEC
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWDI  275 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~--------------~~~i~i~d~  275 (421)
                      +|+.. ++..     .+..+..        ......+..++++|+|++.++    |.              .+.|..+|.
T Consensus       111 ~~~~~-g~~~-----~~~~~~~--------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A          111 RSDAD-GQAH-----LLVGRYA--------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             EECTT-SCEE-----EEECEET--------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             EECCC-CCEE-----EEEeccC--------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            99975 4321     1111000        001235678999999998886    32              145777776


Q ss_pred             CCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC------CeEEEEecCCCCCc--eeEEecCC
Q 014644          276 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAG--GITVEAGK  347 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d------g~i~iwd~~~~~~~--~~~~~~~~  347 (421)
                      .+ ++..... ....+                ..++|+||++.|+.+...      +.|++|++..+...  ........
T Consensus       177 ~~-g~~~~~~-~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~  238 (305)
T 3dr2_A          177 DG-SPLQRMA-DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD  238 (305)
T ss_dssp             SS-CCCEEEE-EESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CC-CcEEEEe-cCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence            54 4433322 21111                589999999988777665      78999998764210  11111122


Q ss_pred             CCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .....+++.++  |+      |..+..++..+|+..+...........+.+++|+|+++.|.+++.++++-++
T Consensus       239 ~~pdgi~~d~~--G~------lwv~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          239 GLPDGFCVDRG--GW------LWSSSGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             SCCCSEEECTT--SC------EEECCSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             CCCCeEEECCC--CC------EEEecCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence            23345555554  33      3344444546664443333333333468899999999999988888887665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=8.3e-11  Score=116.92  Aligned_cols=256  Identities=11%  Similarity=0.017  Sum_probs=141.5

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCC-----CcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d-----~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      |...+..++|  +|||++||.++.+     .+|++||+.+++.......  ...+..++|++. ..+.-........   
T Consensus       161 ~~~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--~~~~~~~~wspD-~~l~~~~~~~~~~---  232 (741)
T 1yr2_A          161 GATALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--WVKFSGLAWLGN-DALLYSRFAEPKE---  232 (741)
T ss_dssp             --EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--EEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--CceeccEEEECC-CEEEEEEecCccc---
Confidence            3346788999  7999999988765     4699999999884332110  011123445444 3333222211100   


Q ss_pred             eccc-c--cccceeEEeeccccee-eeeeeecCCCCcceEEEeecCCCCEEEEE-cCC-----cEEEEeCCCCcee-eee
Q 014644          107 HLEW-T--ENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISDQC-FNI  175 (421)
Q Consensus       107 ~g~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~-----~i~lwd~~~~~~~-~~~  175 (421)
                      .+.. +  ....+.+|++.+.... ..+... ..+...+..+.|+|||++|+.. .++     .|++||+...... ...
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence            0000 0  0124667777654221 222222 3344458899999999998876 543     7999999733112 333


Q ss_pred             eecCCCCCCccCCCeeEEEEecCCCCeEEEEEc----CCeEEEEECCccc-ccccchhhhccccccCCCcccccccccce
Q 014644          176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASI  250 (421)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----d~~v~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  250 (421)
                      +       ..+...+... ++|++ ..|+..+.    ++.|.+||+.++. ..   ..++..             +...+
T Consensus       312 l-------~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~-------------~~~~l  366 (741)
T 1yr2_A          312 L-------IPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPE-------------SKDNL  366 (741)
T ss_dssp             E-------ECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECC-------------CSSEE
T ss_pred             e-------cCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecC-------------CCCeE
Confidence            2       2333444444 35888 77777665    3569999987642 11   122222             13456


Q ss_pred             eEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe----eCC
Q 014644          251 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG----SYS  325 (421)
Q Consensus       251 ~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~----s~d  325 (421)
                      ..+.++ ++.++++... +..+||.+...+.....+..+...              .+..++++|+++.|+..    ...
T Consensus       367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P  431 (741)
T 1yr2_A          367 ESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG--------------SASGLSGRPGDRHAYLSFSSFTQP  431 (741)
T ss_dssp             EEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC--------------EEEEEECCBTCSCEEEEEEETTEE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe--------------EEEEeecCCCCCEEEEEEcCCCCC
Confidence            677777 5556666543 665555443225544444432111              12578899998766522    235


Q ss_pred             CeEEEEecCCC
Q 014644          326 NLLRIFSHGVG  336 (421)
Q Consensus       326 g~i~iwd~~~~  336 (421)
                      ++|++||+.++
T Consensus       432 ~~i~~~d~~tg  442 (741)
T 1yr2_A          432 ATVLALDPATA  442 (741)
T ss_dssp             EEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            78999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.36  E-value=8.9e-10  Score=95.40  Aligned_cols=186  Identities=11%  Similarity=0.035  Sum_probs=131.8

Q ss_pred             ccceeEEeecccceeeeeeeecCCCC-cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      +..+.+||.+++   +.+..+ ..+. ..+++++++|+|++|+ +.++.|..||.. +. .+..+.      .+....+.
T Consensus        14 ~~~v~~~d~~tG---~~~w~~-~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~-~~W~~~------~~~~~~~~   80 (276)
T 3no2_A           14 WNKIAIINKDTK---EIVWEY-PLEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GR-ELWNIA------APAGCEMQ   80 (276)
T ss_dssp             CSEEEEEETTTT---EEEEEE-ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SC-EEEEEE------CCTTCEEE
T ss_pred             CCEEEEEECCCC---eEEEEe-CCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CC-EEEEEc------CCCCcccc
Confidence            457888998777   777777 4444 5789999999999998 546679999984 44 443332      12234678


Q ss_pred             EEEEecCCCCeEEEEEc-CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-Ce
Q 014644          192 SAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN  269 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~  269 (421)
                      ++.+.|+| +.+++.+. ++.|..+|. +++..    ..+..   ...    ...+......+++.++|+++++... +.
T Consensus        81 ~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l----~~~~~---~~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~  147 (276)
T 3no2_A           81 TARILPDG-NALVAWCGHPSTILEVNM-KGEVL----SKTEF---ETG----IERPHAQFRQINKNKKGNYLVPLFATSE  147 (276)
T ss_dssp             EEEECTTS-CEEEEEESTTEEEEEECT-TSCEE----EEEEE---CCS----CSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred             ccEECCCC-CEEEEecCCCCEEEEEeC-CCCEE----EEEec---cCC----CCcccccccCceECCCCCEEEEecCCCE
Confidence            89999999 88888877 778888885 44432    11111   000    0111234556788999999998876 99


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      |..||..  ++.+..+.....+                .++...++|+++++++.++.|..+|..++ +..-.+
T Consensus       148 v~~~d~~--G~~~w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~  202 (276)
T 3no2_A          148 VREIAPN--GQLLNSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRV  202 (276)
T ss_dssp             EEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEE
T ss_pred             EEEECCC--CCEEEEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEe
Confidence            9999985  8888888765332                47788899999999998899999999887 443333

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.34  E-value=3.3e-09  Score=92.88  Aligned_cols=236  Identities=6%  Similarity=-0.041  Sum_probs=151.4

Q ss_pred             CCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          135 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..+...+.++++.++|+++++. .++.|.+||.. . ... .+.     .......+.++++++++ .++++...++.|.
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~-~~~-----~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~   81 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KIT-EYP-----LPTPDAKVMCLTISSDG-EVWFTENAANKIG   81 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEE-EEE-----CSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeE-Eec-----CCcccCceeeEEECCCC-CEEEeCCCCCeEE
Confidence            4455689999999999988887 68999999987 3 222 221     12234678999999998 7777766688999


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      .||.. ++.     ..+..           ......+..++++++|+++++... +.|..||. . ++.. .+.......
T Consensus        82 ~~~~~-g~~-----~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~-~~~~~~~~~  141 (299)
T 2z2n_A           82 RITKK-GII-----KEYTL-----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIR-EYELPNKGS  141 (299)
T ss_dssp             EECTT-SCE-----EEEEC-----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEE-EEECSSTTC
T ss_pred             EECCC-CcE-----EEEeC-----------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-C-CCEE-EecCCCCCC
Confidence            99976 321     11111           001346789999999988887755 88999998 3 4432 222111100


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG  372 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  372 (421)
                                   .+..++++++|++.++...++.|..||. ++......+.........+++.++  +.     .+++.
T Consensus       142 -------------~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~--g~-----l~v~~  200 (299)
T 2z2n_A          142 -------------YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND--DA-----LWFVE  200 (299)
T ss_dssp             -------------CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--SS-----EEEEE
T ss_pred             -------------CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC--CC-----EEEEc
Confidence                         1268999999988777777889999998 542222223333344556666665  33     44444


Q ss_pred             cccCc-ccCCCCCccccc--cccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          373 LYRQA-HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       373 ~~d~~-~iw~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ..++. ..|+..+.....  ......+..+++.|+|++.++.. .++|..|+
T Consensus       201 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          201 IIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             cCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            44444 555333322221  12345788999999999777663 67788886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.32  E-value=3.7e-09  Score=100.68  Aligned_cols=263  Identities=10%  Similarity=0.008  Sum_probs=156.7

Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCC-CCceeeeeeecCCCCCCccCCCe
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE-ISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                      ...+.++|..+.   +.+..+ . ....+..+.|+|||++++++ .|+.|.+||+. ...+.+..+       .. ....
T Consensus       176 ~~~V~viD~~t~---~v~~~i-~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i-------~~-G~~P  242 (567)
T 1qks_A          176 AGQIALIDGSTY---EIKTVL-D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI-------KI-GSEA  242 (567)
T ss_dssp             TTEEEEEETTTC---CEEEEE-E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-------EC-CSEE
T ss_pred             CCeEEEEECCCC---eEEEEE-e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE-------ec-CCCC
Confidence            347888888876   666665 2 23356789999999999988 89999999994 233444443       11 2235


Q ss_pred             eEEEEe----cCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCccccccc-ccceeEEEEcCCCCEEEE
Q 014644          191 TSAEFH----PIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLS  264 (421)
Q Consensus       191 ~~~~~~----p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~  264 (421)
                      ..++|+    |+| +++++++ .+++|.++|..+.+..    +.+........   ....| ...+..+..++++..++.
T Consensus       243 ~~ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~----~~i~~~~~~~~---~~~~~p~~rva~i~~s~~~~~~vv  314 (567)
T 1qks_A          243 RSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPK----KIQSTRGMTYD---EQEYHPEPRVAAILASHYRPEFIV  314 (567)
T ss_dssp             EEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEE----EEEECCEECTT---TCCEESCCCEEEEEECSSSSEEEE
T ss_pred             ceeEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEE----EEEeccccccc---cccccCCCceEEEEEcCCCCEEEE
Confidence            789999    699 6666555 6699999998876543    22221000000   00001 125778889998776554


Q ss_pred             e-cC-CeEEEEECCCCCcce--eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCc
Q 014644          265 R-DY-MNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG  339 (421)
Q Consensus       265 ~-~~-~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~  339 (421)
                      . .+ |.|.++|... ...+  ..+......                .++.|+|+|++++++. .++.|.++|+.++ ..
T Consensus       315 ~~~~~g~v~~vd~~~-~~~~~v~~i~~~~~~----------------~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl  376 (567)
T 1qks_A          315 NVKETGKILLVDYTD-LNNLKTTEISAERFL----------------HDGGLDGSHRYFITAANARNKLVVIDTKEG-KL  376 (567)
T ss_dssp             EETTTTEEEEEETTC-SSEEEEEEEECCSSE----------------EEEEECTTSCEEEEEEGGGTEEEEEETTTT-EE
T ss_pred             EecCCCeEEEEecCC-Cccceeeeeeccccc----------------cCceECCCCCEEEEEeCCCCeEEEEECCCC-cE
Confidence            4 45 9999999875 3222  222222211                5789999999987665 5789999999987 44


Q ss_pred             eeEEec-CC--CCccceee-ecCCcccccccceeeeec-ccCc-ccCCCCC---------ccccccccccCeEEEEEccC
Q 014644          340 GITVEA-GK--NENRKPIL-QAAPRARRSSLSNLTRGL-YRQA-HENSSSG---------HHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       340 ~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~~~l~~g~-~d~~-~iw~~~~---------~~~~~~~~~~~v~~~~~spd  404 (421)
                      ...+.. ..  .+.+...| .|+  +.    ..++++. .++. .+++...         ...........-..+..||+
T Consensus       377 ~~~i~vgg~~Phpg~g~~~~~p~--~g----~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~  450 (567)
T 1qks_A          377 VAIEDTGGQTPHPGRGANFVHPT--FG----PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN  450 (567)
T ss_dssp             EEEEECSSSSBCCTTCEEEEETT--TE----EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             EEEEeccCcCCCCccceeeECCC--CC----cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC
Confidence            444433 21  12233333 443  11    1344442 3344 5552211         11111111122235788999


Q ss_pred             CCeEEEec--------CCceEEEe
Q 014644          405 TNLIACAN--------GNSLFFHY  420 (421)
Q Consensus       405 ~~~la~~~--------~~~~~i~~  420 (421)
                      ++.|.+..        .+.+.+|+
T Consensus       451 ~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          451 SQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             CSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCeEEEecCCCCCcccCceEEEEE
Confidence            99988866        24778776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=3.1e-09  Score=93.28  Aligned_cols=230  Identities=10%  Similarity=0.047  Sum_probs=138.0

Q ss_pred             EEEEEEEEcCC-CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           36 INRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        36 V~~v~~~~~~~-~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      -.+..|  +++ +.++++...++.|..||..+++.....   ....+.            ++.+.+++.++...    ..
T Consensus        15 ~Egp~w--~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~~~------------~i~~~~dG~l~v~~----~~   73 (297)
T 3g4e_A           15 GESPVW--EEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT---MDAPVS------------SVALRQSGGYVATI----GT   73 (297)
T ss_dssp             EEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEE---CSSCEE------------EEEEBTTSSEEEEE----TT
T ss_pred             ccCCeE--ECCCCEEEEEECCCCEEEEEECCCCcEEEEe---CCCceE------------EEEECCCCCEEEEE----CC
Confidence            357788  464 567777778899999999887643332   223233            33333344333221    22


Q ss_pred             ceeEEeecccceeeeeeeecC-CCCcceEEEeecCCCCEEEEE-cC---------CcEEEEeCCCCceeeeeeecCCCCC
Q 014644          115 ATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      .+.+++.++... +.+..... .....++.+++.|+|+++++. ..         ..-.||.+...+......       
T Consensus        74 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------  145 (297)
T 3g4e_A           74 KFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-------  145 (297)
T ss_dssp             EEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-------
T ss_pred             eEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-------
Confidence            355566554311 11111101 123468899999999988875 32         334666665333332221       


Q ss_pred             CccCCCeeEEEEecCCCCeE-EEEEcCCeEEEEECC--cccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          184 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       184 ~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                       ........++|+|++ +.| ++.+.++.|.+||+.  ++.....  +.+..          +......+..++++++|+
T Consensus       146 -~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~--~~~~~----------~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          146 -DQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNR--RSVYK----------LEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             -EEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEE--EEEEE----------CCGGGCEEEEEEEBTTSC
T ss_pred             -eccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCc--EEEEE----------CCCCCCCCCeeEECCCCC
Confidence             233456789999999 655 455567899999874  4332110  11111          111234678999999998


Q ss_pred             EEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc-CCCCEEEEeeC
Q 014644          261 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  324 (421)
Q Consensus       261 ~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~  324 (421)
                      +.++... +.|..||..+ ++.+..+..+...+               ++++|. |+++.|+.++.
T Consensus       212 lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred             EEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence            7777655 8899999976 78877777664332               789998 88887766554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.6e-10  Score=103.84  Aligned_cols=189  Identities=8%  Similarity=0.034  Sum_probs=122.7

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .++.+++  ++...++++|+.+ .+++|++++..- .+..  ...            .                      
T Consensus        39 ~~nlLai--s~~~gll~a~~~~-~l~v~~~~~l~~-~~~~--~~~------------~----------------------   78 (388)
T 1xip_A           39 SLQNLDI--SNSKSLFVAASGS-KAVVGELQLLRD-HITS--DST------------P----------------------   78 (388)
T ss_dssp             CCBCEEE--ETTTTEEEEEETT-EEEEEEHHHHHH-HHHS--SSC------------C----------------------
T ss_pred             cccEEEE--cCCCCEEEEeCCC-EEEEEEhhHhhh-hhcc--ccc------------c----------------------
Confidence            6899999  6888899999987 556699765320 0000  000            0                      


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                                  .+.....  .+.. |+.++|  |+.+|+++.++.|++||+....+.. ..       ..|...+.++.
T Consensus        79 ------------~~~~~~~--~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~-~~-------~~~~~~v~~i~  133 (388)
T 1xip_A           79 ------------LTFKWEK--EIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFR-TV-------TSFEKPVFQLK  133 (388)
T ss_dssp             ------------CCCSEEE--ECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEE-EE-------EECSSCEEEEE
T ss_pred             ------------ccceEEe--eCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccC-cc-------ceeecceeeEE
Confidence                        0111111  3455 999999  9999999988999999998433222 22       34566788777


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD  274 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d  274 (421)
                      +.+.   .+++++.||.|.+||+.++...    .   .              ...|++++|+|+| +.+...+|++++|+
T Consensus       134 ~~~p---~~av~~~dG~L~v~dl~~~~~~----~---~--------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~~  188 (388)
T 1xip_A          134 NVNN---TLVILNSVNDLSALDLRTKSTK----Q---L--------------AQNVTSFDVTNSQ-LAVLLKDRSFQSFA  188 (388)
T ss_dssp             ECSS---EEEEEETTSEEEEEETTTCCEE----E---E--------------EESEEEEEECSSE-EEEEETTSCEEEEE
T ss_pred             ecCC---CEEEEECCCCEEEEEccCCccc----c---c--------------cCCceEEEEcCCc-eEEEEcCCcEEEEc
Confidence            6653   3888899999999999876532    1   1              4579999999999 44444559999998


Q ss_pred             CCCCCcc--eeEEeeccCcccccccccC-CCcceeeeEEEEcCCCCEEEE
Q 014644          275 IRMDSTP--VATFKIHEHLRPKLCDLYN-NDSIFDKFECSVSGDGLHFAT  321 (421)
Q Consensus       275 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~~~~l~~  321 (421)
                      ... ++.  ...+......       .+ .+.-+.|.+++|.++++++++
T Consensus       189 ~~~-~~~~~k~~I~~Pp~~-------~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          189 WRN-GEMEKQFEFSLPSEL-------EELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EET-TEEEEEEEECCCHHH-------HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCC-ccccccceecCCccc-------ccccCCCeeEEEEEEecCCeEEEE
Confidence            864 443  3344221100       00 000123479999999998876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=7.8e-09  Score=91.98  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc------CCeE
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV  212 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------d~~v  212 (421)
                      ..+.+++++++|+++++..+ .|.+||.. +++........   .......+.+++++|+| +++++...      .+.|
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~-~g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECC-CCcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence            35888999999988887644 49999987 34433222110   00112458899999999 76655432      2455


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECC-CCC-cce--eEEe
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIR-MDS-TPV--ATFK  286 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~-~~~-~~~--~~~~  286 (421)
                      ..++  +++..    .....              ......++|+|||+.++.+ +. +.|.+||+. ..+ ...  ..+.
T Consensus       164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~  223 (326)
T 2ghs_A          164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  223 (326)
T ss_dssp             EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence            5555  33321    11111              2346789999999877654 44 899999985 114 221  1121


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      ......         .   ....++++++|.+.++...++.|.+|+..
T Consensus       224 ~~~~~~---------~---~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          224 DSTGIK---------G---GMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             ECTTSS---------S---EEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             ECCCCC---------C---CCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            110000         0   11578999999887777677899999873

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=9.1e-10  Score=108.47  Aligned_cols=237  Identities=11%  Similarity=0.031  Sum_probs=143.8

Q ss_pred             CCCCcceEEEeecCCCCEEEEE------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          135 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s~------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      .+|...+..++|||||++||.+      +...|++||+.+ ++.+...      +.  .....+++|+ |+ +.|+.++.
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~------~~--~~k~~~~~Ws-Dg-~~l~y~~~  193 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETP------LK--DVKFSGISWL-GN-EGFFYSSY  193 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEE------EE--EEESCCCEEE-TT-TEEEEEES
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCccc------cC--CceeccEEEe-CC-CEEEEEEe
Confidence            4566678899999999999954      235799999984 4433211      01  1113578899 99 88888877


Q ss_pred             CC-------------eEEEEECCcccccccchhhhccccccCCCcccccc-cccceeEEEEcCCCCEEEEe-c---C-Ce
Q 014644          209 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN  269 (421)
Q Consensus       209 d~-------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~---~-~~  269 (421)
                      +.             .|++|++.++...+.  .++..           .. +......+.|+|||++|+.. .   . ..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCE--EEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccce--EEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence            64             389999877543211  12222           11 23346789999999988643 1   2 58


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CC---CeEEEEecCCCCC-ceeEEe
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YS---NLLRIFSHGVGSA-GGITVE  344 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~d---g~i~iwd~~~~~~-~~~~~~  344 (421)
                      |+++|+.........+..+....               ... ++++|..|+..+ .+   +.|..+++.++.. ....+.
T Consensus       261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            99999976333445555544332               233 666666655444 33   6799999987633 134566


Q ss_pred             cCCCCccceeeecCCcccccccceeee-ecccCc-ccC--CCCCcccccc--ccccCeEEEEEccCCCeEEEec-C----
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTR-GLYRQA-HEN--SSSGHHELSY--NLSSKLLHLAWHPTTNLIACAN-G----  413 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~d~~-~iw--~~~~~~~~~~--~~~~~v~~~~~spd~~~la~~~-~----  413 (421)
                      .|...+.  .+++.  +.     .|+. ...++. +|+  +..+.....+  .....+..++++|+++.|+... +    
T Consensus       325 ~~~~~~~--~~s~~--g~-----~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP  395 (693)
T 3iuj_A          325 PERQQVL--TVHSG--SG-----YLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP  395 (693)
T ss_dssp             CCCSSCE--EEEEE--TT-----EEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC
T ss_pred             cCCCCEE--EEEEE--CC-----EEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC
Confidence            6665554  67776  22     4444 445554 444  4332222222  2344577888899988877554 2    


Q ss_pred             CceEEEe
Q 014644          414 NSLFFHY  420 (421)
Q Consensus       414 ~~~~i~~  420 (421)
                      ..++.|+
T Consensus       396 ~~l~~~d  402 (693)
T 3iuj_A          396 PTLYRFE  402 (693)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEE
Confidence            5677765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=4.7e-09  Score=92.11  Aligned_cols=228  Identities=10%  Similarity=-0.021  Sum_probs=134.2

Q ss_pred             CCCcceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          136 AHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      .+..-..+..|++++ .++++. .++.|..||.. ++.. ..+        .....+.+++++|++ +++++ . ++.|.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~-~~~~-~~~--------~~~~~~~~i~~~~dG-~l~v~-~-~~~l~   76 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSF-TKQV-QRV--------TMDAPVSSVALRQSG-GYVAT-I-GTKFC   76 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETT-TCCE-EEE--------ECSSCEEEEEEBTTS-SEEEE-E-TTEEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECC-CCcE-EEE--------eCCCceEEEEECCCC-CEEEE-E-CCeEE
Confidence            344456788999964 455556 78999999998 3332 222        133578999999999 75554 3 66899


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC----------CeEEEEECCCCCccee
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------~~i~i~d~~~~~~~~~  283 (421)
                      +||..+++..    ..... .  .      ......++.++++|+|+++++...          ..-.||.+...++...
T Consensus        77 ~~d~~~g~~~----~~~~~-~--~------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~  143 (297)
T 3g4e_A           77 ALNWKEQSAV----VLATV-D--N------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK  143 (297)
T ss_dssp             EEETTTTEEE----EEEEC-C--T------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred             EEECCCCcEE----EEEec-C--C------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence            9998876532    11111 0  0      001245789999999997775421          2234555543243332


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecC--CCCCc----eeEEecCCCCccceeee
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHG--VGSAG----GITVEAGKNENRKPILQ  356 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~--~~~~~----~~~~~~~~~~~~~~~~~  356 (421)
                      .......+                ..++|+|+++.|+ +.+.++.|.+|++.  ++...    ...+..+......+++.
T Consensus       144 ~~~~~~~p----------------ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d  207 (297)
T 3g4e_A          144 YFDQVDIS----------------NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID  207 (297)
T ss_dssp             EEEEESBE----------------EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred             Eeeccccc----------------cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence            22221111                6899999998765 45567899999984  33211    11112222334556665


Q ss_pred             cCCcccccccceeeeecccCc-ccCCC--CCccccccccccCeEEEEEc-cCCCeEEEec
Q 014644          357 AAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWH-PTTNLIACAN  412 (421)
Q Consensus       357 ~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~~~~~~~v~~~~~s-pd~~~la~~~  412 (421)
                      ++  |+     +.++....+. ..|+.  ++.+.........+++++|. ||++.|.+++
T Consensus       208 ~~--G~-----lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          208 AE--GK-----LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TT--SC-----EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CC--CC-----EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            55  33     4444444444 55643  34444443445679999998 8988776554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.24  E-value=1.2e-08  Score=91.37  Aligned_cols=238  Identities=12%  Similarity=0.056  Sum_probs=130.8

Q ss_pred             EeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc--CC
Q 014644          144 ISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RG  210 (421)
Q Consensus       144 l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--d~  210 (421)
                      ++++|||++++.+ .          ++.|.+||.. ..+....+.+....-.........+.|+||| ++++.+..  ++
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~  160 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAP  160 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSC
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCC
Confidence            8999999988765 2          5789999998 4555555532110000012245679999999 88777763  68


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecCCeEEEEECCCCCcceeEEeecc
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      .|.++|+.+++..    ..+..              .+ . ...+....+.+++ +.+|.+.+.++...++.........
T Consensus       161 ~VsVID~~t~~vv----~tI~v--------------~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~  220 (386)
T 3sjl_D          161 AVGVVDLEGKAFK----RMLDV--------------PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  220 (386)
T ss_dssp             EEEEEETTTTEEE----EEEEC--------------CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             eEEEEECCCCcEE----EEEEC--------------CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeeccee
Confidence            9999999997654    22222              11 1 1122222333333 3447777777764344422111000


Q ss_pred             CcccccccccCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecCCCCCc-eeEEe--------c--CCCCccceeeec
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAG-GITVE--------A--GKNENRKPILQA  357 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~--------~--~~~~~~~~~~~~  357 (421)
                      .        .....++  ....|. ++|++++ .+.+|.|++.|+...... ...+.        .  .......+++++
T Consensus       221 ~--------~~~~~~~--~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          221 H--------PEDEFLI--NHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             S--------CTTSCBC--SCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             c--------ccccccc--ccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            0        0111121  234664 6786554 666899999998765321 11111        0  112334456655


Q ss_pred             CCcccccccceeeeecc--------cCc-ccC---CCCCccccccccccCeEEEEEccCCC-eEEEec--CCceEEEeC
Q 014644          358 APRARRSSLSNLTRGLY--------RQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA  421 (421)
Q Consensus       358 ~~~~~~~~~~~l~~g~~--------d~~-~iw---~~~~~~~~~~~~~~~v~~~~~spd~~-~la~~~--~~~~~i~~~  421 (421)
                      +  +.     .|.....        +.. ++|   .........+.....+..++++||++ +|+++.  ++.+.++++
T Consensus       290 ~--~~-----~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          290 A--LD-----RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             T--TT-----EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             C--CC-----eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            5  22     3333221        122 677   22233333334445788999999996 666644  677988874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=9.6e-09  Score=92.10  Aligned_cols=180  Identities=7%  Similarity=0.050  Sum_probs=108.7

Q ss_pred             CCCcceEEEeecCCCCEEEEE-c-----CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--
Q 014644          136 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--  207 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~-----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--  207 (421)
                      +|-..+..+++.++++++++- .     +..|.+||+. +++..+.+.+... ...+...+..++++|++...+++-.  
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECChh-hcccccccceEEEecCCCEEEEEcCcc
Confidence            456689999999999877765 4     6899999998 5565555543211 1123345789999987524445544  


Q ss_pred             -cCCeEEEEECCcccccccchhhhccccc-cCCC-cccccc--------------cccceeEEEEcCCCCEEEEecC--C
Q 014644          208 -SRGFVRLVDMRQSALCDHSARILRDAAE-SHGS-KSFFTE--------------IIASISDIKFANDGQHLLSRDY--M  268 (421)
Q Consensus       208 -~d~~v~iwd~~~~~~~~~~~~~~~~h~~-~~~~-~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~--~  268 (421)
                       .++.|.+||+.+++..    +.+..|.. .+.. .....+              ....+..++|+|||+.|+.+..  .
T Consensus       142 ~~~~~i~v~d~~~g~~~----r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~  217 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAA----RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST  217 (343)
T ss_dssp             GGGCEEEEEETTTCCEE----EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS
T ss_pred             CCCCeEEEEECCCCCEE----EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC
Confidence             6789999999876543    22211100 0000 000000              0124688999999998887644  4


Q ss_pred             eEEEEECCC--CCc-----cee--EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          269 NLKLWDIRM--DST-----PVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       269 ~i~i~d~~~--~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .+..++...  .+.     ...  ...++....               ..++++++|.+.++...++.|.+||..++
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          218 SMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence            555555321  010     000  111111111               47999999999998888999999998444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=2.3e-08  Score=91.75  Aligned_cols=270  Identities=10%  Similarity=0.087  Sum_probs=148.2

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      ....|+|  +++++++++...++.|++||.+++.+..+.......  . ++            +.++...+.........
T Consensus       132 ~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~--~-ia------------~~~~g~~l~~~d~~~~~  194 (409)
T 3hrp_A          132 YMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG--K-PA------------VTKDKQRVYSIGWEGTH  194 (409)
T ss_dssp             CEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC--B-CE------------ECTTSSEEEEEBSSTTC
T ss_pred             CceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC--c-ee------------EecCCCcEEEEecCCCc
Confidence            5678999  688888888888899999999988765554321111  1 22            23333333322221111


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe-e-
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T-  191 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~-  191 (421)
                      .+..++.........+..+.......+.+++++|++..|..+ .++.|+.||... ... ..+...  ...++...- . 
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~~-~~~~~~--~~~g~~~~~P~~  270 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QEV-TLIKQL--ELSGSLGTNPGP  270 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CCE-EEEEEC--CCCSCCCCSSCC
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CCE-EEEecc--cccCCCCCCccc
Confidence            344444443321112212212245667899999954455557 888999999983 322 221000  011222222 3 


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCc--ccccccccceeEEEEcCCCCEEEEec-C-
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLSRD-Y-  267 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~-  267 (421)
                      .++|+|++..++++-..++.|+.|+.....      ..+..+.......  ......-.....++++|+|+++++-. . 
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~  344 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG  344 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence            999999642666666678899999876431      1111100000000  00001123478999999999777766 6 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      +.|+.|++.. +. +..+.++..........-....+.....++++|+|.++++-..++.|+.+++
T Consensus       345 ~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          345 YCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            8999999754 54 4444443110000000000000112368999999888888888889988765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=2.2e-10  Score=102.93  Aligned_cols=150  Identities=13%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeee--eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN--IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .++.|++++...++++| .+ .+.+|+++.-.....  ..+..+.....+.. |+.++|  ++ ..|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEE
Confidence            68999999999999998 55 677798752110000  00000000123556 999999  77 888888 889999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cCCeEEEEECCCCCcceeEEeeccCccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      +++....    .....             +...+..+.+.+..  ++++ ++|.|.+||+.. +.... .   ...    
T Consensus       113 v~sl~~~----~~~~~-------------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~-~---~~~----  164 (388)
T 1xip_A          113 LEELSEF----RTVTS-------------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ-L---AQN----  164 (388)
T ss_dssp             SSSTTCE----EEEEE-------------CSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE-E---EES----
T ss_pred             chhhhcc----Cccce-------------eecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc-c---cCC----
Confidence            9875422    11112             24457777776543  5554 559999999985 44432 1   122    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                                 |.+++|+|+|  ++.|..||.+++|+....
T Consensus       165 -----------Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          165 -----------VTSFDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             -----------EEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             -----------ceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence                       2799999999  678999999999988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.21  E-value=6.2e-08  Score=87.61  Aligned_cols=236  Identities=9%  Similarity=-0.025  Sum_probs=130.9

Q ss_pred             EEeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecC-CCCCCccCCCeeEEEEecCCCCeEEEEEc--
Q 014644          143 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS--  208 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--  208 (421)
                      .++++|||++|+.+ .          ++.|.+||.. ..+....+.+. ..... +......+.|+|+| ++|+.+..  
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG-~~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFD-VGPYSWMNANTPNN-ADLLFFQFAA  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-CCcEEEEEECCCccccc-cCCCccceEECCCC-CEEEEEecCC
Confidence            78999999999887 3          5789999998 44455544321 10100 11334689999999 88887764  


Q ss_pred             CCeEEEEECCcccccccchhh-hccccccCCCcccccccccceeEEEEcCCCCEE-EE-ecCCeEEEEECCCCCcceeEE
Q 014644          209 RGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LS-RDYMNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~~~~~i~i~d~~~~~~~~~~~  285 (421)
                      ++.|.++| .+++..    .. +..              .   .++.+.|++... ++ +.+|.+.++|. + ++.+...
T Consensus       147 ~~~v~viD-~t~~~~----~~~i~~--------------~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~  202 (373)
T 2mad_H          147 GPAVGLVV-QGGSSD----DQLLSS--------------P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAG  202 (373)
T ss_pred             CCeEEEEE-CCCCEE----eEEcCC--------------C---ceEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEE
Confidence            57899999 887643    22 222              1   124455665433 33 34488999999 5 5554322


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-eeEEecCC----------CCcccee
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGK----------NENRKPI  354 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~----------~~~~~~~  354 (421)
                      .......       ..+.++  ....+.+++..++..+.++.+.+.|+...... ...+....          .....+.
T Consensus       203 ~~~~~~~-------~~~p~~--~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          203 LVGAMLT-------AAQNLL--TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             ecccccc-------CCccee--ecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence            1100000       000110  23456676655555557889999998754221 11221111          1112244


Q ss_pred             eecCCcccccccceeeeeccc--------Cc-ccC--CC-CCccccccccccCeEEEEEccCCC-eEEEec--CCceEEE
Q 014644          355 LQAAPRARRSSLSNLTRGLYR--------QA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFH  419 (421)
Q Consensus       355 ~~~~~~~~~~~~~~l~~g~~d--------~~-~iw--~~-~~~~~~~~~~~~~v~~~~~spd~~-~la~~~--~~~~~i~  419 (421)
                      ++++  +.     .+.....+        +. .+|  +. .......+........++|+|||+ .|+++.  ++.+.+|
T Consensus       274 ~s~d--~~-----~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          274 YLKS--SD-----GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             ECCC--CC-----EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence            5554  22     33332211        12 455  22 222223334445688999999999 677665  6779988


Q ss_pred             eC
Q 014644          420 YA  421 (421)
Q Consensus       420 ~~  421 (421)
                      ++
T Consensus       347 D~  348 (373)
T 2mad_H          347 DA  348 (373)
T ss_pred             EC
Confidence            74

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.20  E-value=4e-09  Score=103.90  Aligned_cols=255  Identities=12%  Similarity=0.056  Sum_probs=141.7

Q ss_pred             cccccEEEEEEEEcCCCCeEEEE-----eCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceee
Q 014644           31 EIEEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~-----s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      +|...+..++|  +||+++||-+     +.+.+|++||+.+++.........  ....++|. ....+.-.......   
T Consensus       126 ~~~~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~---  197 (693)
T 3iuj_A          126 DGTTALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPD---  197 (693)
T ss_dssp             TSCCEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcc---
Confidence            45557888899  8999998854     333589999999988433211100  01233444 33333222221110   


Q ss_pred             eeccc---ccccceeEEeecccce-eeeeeeecCC-CCcceEEEeecCCCCEEEEE-c----CCcEEEEeCCCCceeeee
Q 014644          106 YHLEW---TENMATKIANVGNSVH-ARCQKVYPHA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNI  175 (421)
Q Consensus       106 ~~g~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~-~----d~~i~lwd~~~~~~~~~~  175 (421)
                       .+..   .....+.+|++.+... ..++... .. |...+..+.|+|||++|+.. .    +..|+++|+.........
T Consensus       198 -~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          198 -GSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             --------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             -cccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence             0000   0012567777765422 1222222 33 44557889999999988753 2    358999999744323333


Q ss_pred             eecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC---CeEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      +       ..+....... |++++..+++....+   +.|..+|+.++...  ..+.+..             +...+. 
T Consensus       276 l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~-------------~~~~~~-  331 (693)
T 3iuj_A          276 V-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIP-------------ERQQVL-  331 (693)
T ss_dssp             E-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEEC-------------CCSSCE-
T ss_pred             E-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEec-------------CCCCEE-
Confidence            3       3344445554 677773444444443   67999998875421  0011222             123333 


Q ss_pred             EEEcCCCCEEEEec--C--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC---
Q 014644          253 IKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---  325 (421)
Q Consensus       253 ~~~s~~~~~l~~~~--~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d---  325 (421)
                       .|++++++|+...  +  ..|++||+.  +.....+......              .+..+.++|++..|+....+   
T Consensus       332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~t  394 (693)
T 3iuj_A          332 -TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SVSGFNGKHDDPALYFGFENYAQ  394 (693)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EEEECCCCTTCSCEEEEEECSSS
T ss_pred             -EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eEEeeecCCCCCEEEEEecCCCC
Confidence             8899999887653  2  378899986  3334444322211              11456777887766655444   


Q ss_pred             -CeEEEEecCCC
Q 014644          326 -NLLRIFSHGVG  336 (421)
Q Consensus       326 -g~i~iwd~~~~  336 (421)
                       +.|+.||+.++
T Consensus       395 P~~l~~~d~~~g  406 (693)
T 3iuj_A          395 PPTLYRFEPKSG  406 (693)
T ss_dssp             CCEEEEECTTTC
T ss_pred             CCEEEEEECCCC
Confidence             78999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.20  E-value=3.5e-08  Score=86.28  Aligned_cols=235  Identities=6%  Similarity=-0.026  Sum_probs=148.2

Q ss_pred             CCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          136 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      .....+.++++.++|+++++. .++.|.+||.. . +... +.     +......+.++++.+++ .++++...++.|..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~-----~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FE-----VPTPDAKVMCLIVSSLG-DIWFTENGANKIGK   87 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EE-----CSSTTCCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EE-----CCCCCCcceeEEECCCC-CEEEEecCCCeEEE
Confidence            345678999999999988888 78999999987 3 2222 21     12334678999999998 77776666789999


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      +|.. ++..     .+..           ......+..+++.++|+++++... +.|..+|..  ++.. .+....... 
T Consensus        88 ~d~~-g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~~~-  146 (300)
T 2qc5_A           88 LSKK-GGFT-----EYPL-----------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLPNKGS-  146 (300)
T ss_dssp             ECTT-SCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-EEECSSTTC-
T ss_pred             ECCC-CCeE-----EecC-----------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEE-EccCCCCCC-
Confidence            9977 4321     1111           001246789999999998887764 889999875  3332 222111100 


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                  ...+++++++|++.++...++.|..++. ++......+..+......+++.++  +.     ..++..
T Consensus       147 ------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~--g~-----l~v~~~  206 (300)
T 2qc5_A          147 ------------YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGND--GA-----LWFVEI  206 (300)
T ss_dssp             ------------CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--SS-----EEEEET
T ss_pred             ------------CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCC--CC-----EEEEcc
Confidence                        1268999999997666666789999998 442222222233344556666655  33     444443


Q ss_pred             ccCc-ccCCCCCccccc--cccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          374 YRQA-HENSSSGHHELS--YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       374 ~d~~-~iw~~~~~~~~~--~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ..+. ..++..+.....  ......+..+++.++|++.++.. .++|..|+
T Consensus       207 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            3333 444333222211  12345688999999999776665 57788775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.20  E-value=8.5e-09  Score=94.60  Aligned_cols=236  Identities=7%  Similarity=-0.063  Sum_probs=139.9

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC--eEEEE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLV  215 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~--~v~iw  215 (421)
                      .....++|+++++++++. .++.|++||.. .+......       .. ..... ++|+|++ ..|+++..++  .|.++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~-~g~~~~~~-------~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD-DNKVTTVH-------PG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETT-TTEEEEEE-------ET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECC-CCEEEEee-------cc-CCCCc-eeEecCC-CcEEEEecCCCceEEEE
Confidence            467899999999988877 78999999998 44444433       11 22234 8999999 8888887765  78888


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      +...+...    ..+..  ..       ......+.+++++|++..|..+.. +.|+.||... +. ...+........ 
T Consensus       200 d~~~~~~~----~~~g~--~~-------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~-~~~~~~~~~~g~-  263 (409)
T 3hrp_A          200 MKASGWAP----TRIGQ--LG-------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QE-VTLIKQLELSGS-  263 (409)
T ss_dssp             EGGGTTCE----EEEEE--CC-------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CC-EEEEEECCCCSC-
T ss_pred             EcCCCcee----EEeee--cc-------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CC-EEEEecccccCC-
Confidence            87654321    11100  00       001345788999995444444544 8899999875 33 333311100000 


Q ss_pred             cccccCCCcceeee-EEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCC---------------CCccceeeec
Q 014644          295 LCDLYNNDSIFDKF-ECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---------------NENRKPILQA  357 (421)
Q Consensus       295 ~~~~~~~~~~~~~~-~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~  357 (421)
                              ...... .++|+|+ +.++++-..++.|+.|+....   ...+.++.               .....+++.+
T Consensus       264 --------~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          264 --------LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             --------CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             --------CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence                    000002 8999995 555566667889999987633   33333332               2345566766


Q ss_pred             CCcccccccceeeeec-ccCc-ccCC-CCCcccccccc---------------ccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          358 APRARRSSLSNLTRGL-YRQA-HENS-SSGHHELSYNL---------------SSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       358 ~~~~~~~~~~~l~~g~-~d~~-~iw~-~~~~~~~~~~~---------------~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      +  +.     ++++-. .+.. +.|+ ..+.+....+.               -.....++++|++.++++-. .+.|+-
T Consensus       333 d--G~-----lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~  405 (409)
T 3hrp_A          333 D--GN-----FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK  405 (409)
T ss_dssp             T--CC-----EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred             C--CC-----EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence            6  33     445544 4444 5554 33333332222               24578999999988777766 455665


Q ss_pred             E
Q 014644          419 H  419 (421)
Q Consensus       419 ~  419 (421)
                      +
T Consensus       406 i  406 (409)
T 3hrp_A          406 Y  406 (409)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.13  E-value=2.1e-08  Score=88.55  Aligned_cols=159  Identities=8%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             cceEEEeecCCCCEEEEE-cC---------------CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe----cC
Q 014644          139 FNINSISNNSDCETFVSA-DD---------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PI  198 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d---------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~  198 (421)
                      ..+.++++.++|+++++. .+               +.|..|+..  ++.....        .+......++|+    |+
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~--------~~~~~~~~i~~~~~~d~d  186 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD--------TAFQFPNGIAVRHMNDGR  186 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE--------EEESSEEEEEEEECTTSC
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCEEEec--------cCCCCcceEEEecccCCC
Confidence            457889999999988887 54               456666654  3332221        223446889999    99


Q ss_pred             CCCeEEEE-EcCCeEEEEECC-cccccccchhhhccccccCCCcccccccc-cceeEEEEcCCCCEEEEecC-CeEEEEE
Q 014644          199 YCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDY-MNLKLWD  274 (421)
Q Consensus       199 ~~~~l~s~-~~d~~v~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~-~~i~i~d  274 (421)
                      + +.++.+ ..++.|.+||+. .+....  ...+..          +..+. ..+..++++++|+++++... +.|.+||
T Consensus       187 g-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~----------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          187 P-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH----------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             E-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE----------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             C-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE----------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence            8 665555 467899999976 332110  011111          01112 45788999999988887644 8999999


Q ss_pred             CCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEE-eeCCCeEEEEecCCC
Q 014644          275 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVG  336 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-~s~dg~i~iwd~~~~  336 (421)
                      .++ ++.+..+..+...+               .+++|+|+++.|+. ...++.|..|++...
T Consensus       254 ~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          254 PDG-GQPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTC-BSCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCC-CcEeEEEeCCCCCc---------------eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            875 56655555443322               68999999995554 455689999998753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=2.3e-07  Score=83.86  Aligned_cols=254  Identities=11%  Similarity=0.048  Sum_probs=145.1

Q ss_pred             EEEEEEcCCCCeEEEEe----------CCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           38 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        38 ~v~~~~~~~~~~l~t~s----------~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      .+.+  +||+++++.+.          .++.|.+||..+.+. ..+.........       .........++++++++.
T Consensus        70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-------~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H           70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-------VGPYSWMNANTPNNADLL  140 (373)
T ss_pred             CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-------cCCCccceEECCCCCEEE
Confidence            7888  79999888885          367899999987663 233221000000       000112345566666666


Q ss_pred             ecccccccceeEEeecccceeeeeee-ecCCCCcceEEEeecCCCC-EEEEE-cCCcEEEEeCCCCceeeeeeecCCCCC
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  183 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~-~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  183 (421)
                      .........+.++| .+.   +.+.. + .- ..   ++.+.|+++ .+++. .||++.+++. .... .......+ ..
T Consensus       141 v~n~~~~~~v~viD-~t~---~~~~~~i-~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~-~~  208 (373)
T 2mad_H          141 FFQFAAGPAVGLVV-QGG---SSDDQLL-SS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGA-ML  208 (373)
T ss_pred             EEecCCCCeEEEEE-CCC---CEEeEEc-CC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccc-cc
Confidence            55443234567777 666   55555 4 21 11   244556554 33444 8999999999 4433 32221100 00


Q ss_pred             CccCCC-eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          184 DDLTEV-ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       184 ~~~~~~-v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                       ....+ .....+.+++ ..++..+..+.+.+.|+.......  ...+.. ......  ...........+.++|+++.+
T Consensus       209 -~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~-~~~~~~--~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          209 -TAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDA-LSGGRK--ADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             -cCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeee-cCCccc--ccceecCceEeEEECCCCCEE
Confidence             11112 2235677776 555555578899999987543110  111111 000000  000011234457899998877


Q ss_pred             EEec----------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEE
Q 014644          263 LSRD----------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLR  329 (421)
Q Consensus       263 ~~~~----------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~  329 (421)
                      ....          . +.|.++|+.+ .+.+..+.....+                .+++|+|||+ .++++. .++.|.
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEE
Confidence            6642          1 5799999987 8888888655433                5899999999 777777 489999


Q ss_pred             EEecCCC
Q 014644          330 IFSHGVG  336 (421)
Q Consensus       330 iwd~~~~  336 (421)
                      ++|+.++
T Consensus       345 ViD~~t~  351 (373)
T 2mad_H          345 IYDAGAG  351 (373)
T ss_pred             EEECCCC
Confidence            9999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.07  E-value=1.3e-07  Score=86.16  Aligned_cols=258  Identities=7%  Similarity=-0.071  Sum_probs=144.4

Q ss_pred             EEcCCCCeEEEEeC-C----CcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc-----
Q 014644           42 CAAPNGSMFILSTN-D----KTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-----  110 (421)
Q Consensus        42 ~~~~~~~~l~t~s~-d----~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----  110 (421)
                      .|.+++..+.++.. +    ++|.+.|..+.+ +..+.....+                .+.+++++.++.....     
T Consensus        79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P----------------gia~SpDgk~lyVan~~~~~~  142 (426)
T 3c75_H           79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP----------------HPVAAEDGSFFAQASTVFERI  142 (426)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC----------------EEEECTTSSCEEEEEEEEEET
T ss_pred             cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC----------------ceEECCCCCEEEEEecccccc
Confidence            45567776555544 3    799999999988 4444442221                2334445544433332     


Q ss_pred             ---ccccceeEEeecccceeeeeeeecCC------CCcceEEEeecCCCCEEEEE-c--CCcEEEEeCCCCceeeeeeec
Q 014644          111 ---TENMATKIANVGNSVHARCQKVYPHA------HDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDM  178 (421)
Q Consensus       111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~-~--d~~i~lwd~~~~~~~~~~~~~  178 (421)
                         .....+.++|..+.   +.++.+.-+      .......++++|||++|+.+ .  +++|.+.|+. ..+.+..+.+
T Consensus       143 ~~G~~~~~VsviD~~t~---~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v  218 (426)
T 3c75_H          143 ARGKRTDYVEVFDPVTF---LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDV  218 (426)
T ss_dssp             TEEEEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEEC
T ss_pred             ccCCCCCEEEEEECCCC---cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEc
Confidence               01336778888776   444443111      12345678999999999986 3  5789999998 5555555533


Q ss_pred             CCCCCCccCCCeeEEE-------------------------------------EecCCCCeEEEEEcCCeEEEEECCccc
Q 014644          179 KPSNMDDLTEVITSAE-------------------------------------FHPIYCNLLAYSSSRGFVRLVDMRQSA  221 (421)
Q Consensus       179 ~~~~~~~~~~~v~~~~-------------------------------------~~p~~~~~l~s~~~d~~v~iwd~~~~~  221 (421)
                      .........+.-.-+.                                     |.+++ ..++..+..+.|.+.|+....
T Consensus       219 ~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          219 PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSC
T ss_pred             CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCc
Confidence            1100000000001122                                     34444 333333444555555554322


Q ss_pred             ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-----------CCeEEEEECCCCCcceeEEeeccC
Q 014644          222 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ...  ...+..   .................++++|+++.++...           .+.|.++|+.+ .+.+.++.....
T Consensus       298 ~~v--~~~~~~---~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~  371 (426)
T 3c75_H          298 ATF--RAPIEA---LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHE  371 (426)
T ss_dssp             EEE--CCCEES---SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE
T ss_pred             eEE--eeeeee---ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCC
Confidence            110  000000   0000000000011223478999988776542           15799999997 888888876554


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeEEEEecCCCCCceeEE
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i~iwd~~~~~~~~~~~  343 (421)
                      +                .++.|+|||+ ++++.. .++.|.++|+.++ +....+
T Consensus       372 P----------------~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI  409 (426)
T 3c75_H          372 I----------------DSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV  409 (426)
T ss_dssp             E----------------CEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred             c----------------CeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence            3                5899999999 888887 5999999999988 444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=8.5e-08  Score=84.36  Aligned_cols=231  Identities=10%  Similarity=-0.014  Sum_probs=132.4

Q ss_pred             ccEEEEEEEEcCCCC-eEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           34 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        34 ~~V~~v~~~~~~~~~-~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .......|  +++++ ++++...++.|..|+. +++...+..  ...            .+..+...+++..+.....  
T Consensus        45 ~~~egp~~--~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~--~~~------------~~~gl~~d~dG~l~v~~~~--  105 (305)
T 3dr2_A           45 TWSEGPAW--WEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD--ATA------------FTNGNAVDAQQRLVHCEHG--  105 (305)
T ss_dssp             SSEEEEEE--EGGGTEEEEEETTTTEEEEEET-TSCEEEEEE--SCS------------CEEEEEECTTSCEEEEETT--
T ss_pred             cCccCCeE--eCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC--CCC------------ccceeeECCCCCEEEEECC--
Confidence            44578889  57777 6777778899999997 444333322  112            1222333333332222110  


Q ss_pred             ccceeEEeecccceeeeeeeecCC-CCcceEEEeecCCCCEEEE----E-c-------------CCcEEEEeCCCCceee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCF  173 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s----~-~-------------d~~i~lwd~~~~~~~~  173 (421)
                      ...+..++.+ +......... .+ ....++++++.|+|+++++    | .             .+.|..||.. .++..
T Consensus       106 ~~~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~  182 (305)
T 3dr2_A          106 RRAITRSDAD-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQ  182 (305)
T ss_dssp             TTEEEEECTT-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCE
T ss_pred             CCEEEEECCC-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEE
Confidence            1233444433 2100111111 11 1234678999999999886    3 2             2456666664 23322


Q ss_pred             eeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC------CeEEEEECCcccccccchhhhccccccCCCcccccccc
Q 014644          174 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  247 (421)
Q Consensus       174 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  247 (421)
                       .+       . .......++|+|++ +.|+.+...      +.|.+||+..+....  ...+..            ...
T Consensus       183 -~~-------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~~------------~~~  238 (305)
T 3dr2_A          183 -RM-------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFAS------------VPD  238 (305)
T ss_dssp             -EE-------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEEC------------CSS
T ss_pred             -EE-------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEEE------------CCC
Confidence             21       1 22346789999999 777776654      789999987543110  011110            012


Q ss_pred             cceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe
Q 014644          248 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL  327 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~  327 (421)
                      .....++++++|++.++. .+.|.+|+..  ++.+..+..+...                .+++|+|+++.|..++.++.
T Consensus       239 ~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          239 GLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             SCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETTEE
T ss_pred             CCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCCeE
Confidence            345678999999955554 4459999984  6777777655432                58999999988888877543


Q ss_pred             EE
Q 014644          328 LR  329 (421)
Q Consensus       328 i~  329 (421)
                      .+
T Consensus       300 ~~  301 (305)
T 3dr2_A          300 WM  301 (305)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.02  E-value=6.7e-07  Score=80.08  Aligned_cols=261  Identities=11%  Similarity=0.045  Sum_probs=146.1

Q ss_pred             EEEEEEcCCCCeEEEEe----------CCCcEEEeecCCce-eEEeeecCCC-CCcccccccccccceeeccCCCCceee
Q 014644           38 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQK-VKKIKEMDHF-PFVSSENTLLAEKNFMNEHNPPSFAHG  105 (421)
Q Consensus        38 ~v~~~~~~~~~~l~t~s----------~d~~v~lwd~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~  105 (421)
                      .+.+  +|+++++.++.          .++.|.+||..+.+ ...+...... ..+        ........++++++++
T Consensus        82 ~va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~--------g~~P~~~a~spDGk~l  151 (386)
T 3sjl_D           82 NPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--------GTYPWMTSLTPDGKTL  151 (386)
T ss_dssp             EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB--------SCCGGGEEECTTSSEE
T ss_pred             cEEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc--------CCCCceEEEcCCCCEE
Confidence            3888  79999887765          36789999999987 3344332100 000        0012234455566655


Q ss_pred             eecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          106 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                      ..........+.++|..+.   +.+..+....   . ...+....+.+++. .||++.+.++...++..... .+  .+.
T Consensus       152 yVan~~~~~~VsVID~~t~---~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~--~~~  221 (386)
T 3sjl_D          152 LFYQFSPAPAVGVVDLEGK---AFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TE--VFH  221 (386)
T ss_dssp             EEEECSSSCEEEEEETTTT---EEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CC--CCS
T ss_pred             EEEEcCCCCeEEEEECCCC---cEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cc--eec
Confidence            5443322456888888887   5555551111   1 11222233444444 77777777776423322111 00  111


Q ss_pred             ccCCCee-EEEEe-cCCCCeEEEEEcCCeEEEEECCccccc-ccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          185 DLTEVIT-SAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       185 ~~~~~v~-~~~~~-p~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      ....++. ...|. ++| + ++..+.+|.|.+.|+..+... .....++......+      .........++++|+++.
T Consensus       222 ~~~~~~~~~~~~~~~dG-~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~------g~~p~g~q~~a~~~~~~~  293 (386)
T 3sjl_D          222 PEDEFLINHPAYSQKAG-R-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD------GWRPGGWQQVAYHRALDR  293 (386)
T ss_dssp             CTTSCBCSCCEEETTTT-E-EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT------TEEECSSSCEEEETTTTE
T ss_pred             cccccccccceeEcCCC-c-EEEEeCCCEEEEEECCCCcceeecceeccccccccc------cccCCCcceeeECCCCCe
Confidence            1112222 24665 565 4 444677899999999765421 11111000000000      001223446788999888


Q ss_pred             EEEec----------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee-CCCeE
Q 014644          262 LLSRD----------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLL  328 (421)
Q Consensus       262 l~~~~----------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s-~dg~i  328 (421)
                      +....          - +.|.++|+.+ .+.+..+......                .+++++||++ +|++.. .++.|
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTTEE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCCeE
Confidence            77642          1 5799999997 8888887765433                5899999997 666654 58999


Q ss_pred             EEEecCCCCCceeEEe
Q 014644          329 RIFSHGVGSAGGITVE  344 (421)
Q Consensus       329 ~iwd~~~~~~~~~~~~  344 (421)
                      .++|..++ +....+.
T Consensus       357 sViD~~t~-k~~~~i~  371 (386)
T 3sjl_D          357 YIHDAESG-EELRSVN  371 (386)
T ss_dssp             EEEETTTC-CEEEEEC
T ss_pred             EEEECCCC-cEEEEec
Confidence            99999987 4444443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.97  E-value=2.8e-07  Score=81.88  Aligned_cols=219  Identities=8%  Similarity=0.021  Sum_probs=127.0

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccc
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  124 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  124 (421)
                      .++.++++...++.|..||..+++.......  . .+.++++.            +++.++...    ...+.+++..++
T Consensus        59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~--~-~v~~i~~~------------~dg~l~v~~----~~gl~~~d~~~g  119 (326)
T 2ghs_A           59 ASGTAWWFNILERELHELHLASGRKTVHALP--F-MGSALAKI------------SDSKQLIAS----DDGLFLRDTATG  119 (326)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEECS--S-CEEEEEEE------------ETTEEEEEE----TTEEEEEETTTC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEECC--C-cceEEEEe------------CCCeEEEEE----CCCEEEEECCCC
Confidence            5677888888889999999888775444322  1 23333333            222222221    112455555443


Q ss_pred             ceeeeeeeec--CC-CCcceEEEeecCCCCEEEEE-cC----CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644          125 VHARCQKVYP--HA-HDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  196 (421)
Q Consensus       125 ~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~l~s~-~d----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  196 (421)
                         +......  .+ ....+++++++|+|+++++. .+    ....||.++ .++.....        .+......++|+
T Consensus       120 ---~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~--------~~~~~~~~i~~s  187 (326)
T 2ghs_A          120 ---VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--------ADISIPNSICFS  187 (326)
T ss_dssp             ---CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--------EEESSEEEEEEC
T ss_pred             ---cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEee--------CCCcccCCeEEc
Confidence               2211110  11 13468999999999987765 32    234444443 34333221        122346789999


Q ss_pred             cCCCCeEEEE-EcCCeEEEEECC--cc-cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          197 PIYCNLLAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       197 p~~~~~l~s~-~~d~~v~iwd~~--~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      |++ +.++.+ +.++.|.+||+.  ++ .....  +.+..          +......+..++++++|.+.++... +.|.
T Consensus       188 ~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~----------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          188 PDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             TTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CCC-CEEEEEECCCCEEEEEEcccccCCcccCc--eEEEE----------CCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence            999 766544 457899999986  44 22110  11110          0111345678999999987777644 8899


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc-CCCCEEEEeeC
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY  324 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~  324 (421)
                      +||..  ++.+..+..+...+               .+++|+ |+++.|+.++.
T Consensus       255 ~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          255 RYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred             EECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence            99983  66666665544322               689998 88877765543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.90  E-value=1.2e-09  Score=98.83  Aligned_cols=181  Identities=10%  Similarity=0.070  Sum_probs=94.1

Q ss_pred             CCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccc
Q 014644           45 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  124 (421)
Q Consensus        45 ~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  124 (421)
                      -++..+++++.|+.|..||..+++..-...                                                  
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------------------------------------------------   36 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLK--------------------------------------------------   36 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEE--------------------------------------------------
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEec--------------------------------------------------
Confidence            357899999999999999999887321111                                                  


Q ss_pred             ceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC-CCee-EEEEecCCCC
Q 014644          125 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCN  201 (421)
Q Consensus       125 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~~~~p~~~~  201 (421)
                                 .  +.+.+..+..++..++++ .|+.|+.||.++ ++.....       ..+. ..+. +..+. .+ .
T Consensus        37 -----------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~-------~~~~~~~~~~sp~~~-~~-~   93 (369)
T 2hz6_A           37 -----------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKL-------PFTIPELVQASPCRS-SD-G   93 (369)
T ss_dssp             -----------C--CCSCCCC-----CCEEECTTTCCEEEC------CCSEEC-------SCCHHHHHTTCSCC------
T ss_pred             -----------C--CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeee-------eccCccccccCceEe-cC-C
Confidence                       1  122233344567777777 999999999973 3332222       1110 0110 11111 23 5


Q ss_pred             eEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCc
Q 014644          202 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST  280 (421)
Q Consensus       202 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~  280 (421)
                      .+++++.|+.|+.||..+++..    ..+..+              .   ...++|++..+++++. +.|+.||.++ ++
T Consensus        94 ~v~~g~~dg~v~a~D~~tG~~~----w~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~  151 (369)
T 2hz6_A           94 ILYMGKKQDIWYVIDLLTGEKQ----QTLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RE  151 (369)
T ss_dssp             -CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SS
T ss_pred             EEEEEeCCCEEEEEECCCCcEE----EEecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CC
Confidence            6778888999999999998743    222221              1   2345567778877765 9999999987 77


Q ss_pred             ceeEEeeccCcccccccccCCCcceeeeEEEEcCCC---CEEEEeeCCCeEEEEecCCCC
Q 014644          281 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      .+..+.....                 ...+++++.   ..+++++.||.|+.||..+++
T Consensus       152 ~~W~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          152 LRWNATYFDY-----------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             CCCEEEEEEE-----------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             EEEeEecccc-----------------cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            6655543221                 123333332   456778899999999999883

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=9e-07  Score=80.67  Aligned_cols=256  Identities=10%  Similarity=0.010  Sum_probs=145.6

Q ss_pred             cceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-c----------CCcEEEEeCCCCceeeeeeecC-CC
Q 014644          114 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PS  181 (421)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~----------d~~i~lwd~~~~~~~~~~~~~~-~~  181 (421)
                      ..+.+.|..+.   +.+..+..+ ..+  .++++||+++|+.+ .          ++.|.++|.. ..+....+.+. ..
T Consensus        99 ~~VsVID~~t~---~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~  171 (426)
T 3c75_H           99 TQQFVIDGSTG---RILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAP  171 (426)
T ss_dssp             EEEEEEETTTT---EEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCC
T ss_pred             CeEEEEECCCC---EEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCcc
Confidence            57788888877   666666223 334  79999999988876 3          5689999998 45555554321 00


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEc--CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCC
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  259 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (421)
                      .. ........+.|+||| ++++.+..  ++.|.+.|+.+++..    ..+..              ..   +....|++
T Consensus       172 r~-~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv----~~I~v--------------~g---~~~~~p~g  228 (426)
T 3c75_H          172 RF-LVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFD----RMLDV--------------PD---CYHIFPAS  228 (426)
T ss_dssp             CC-CBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEE----EEEEC--------------CS---EEEEEEEE
T ss_pred             cc-ccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEE----EEEEc--------------CC---ceeeccCC
Confidence            00 012335678999999 88887764  589999999987654    22222              01   12233333


Q ss_pred             -CEEEE-ecCCeEEEEECCCCCcceeEE----eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          260 -QHLLS-RDYMNLKLWDIRMDSTPVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       260 -~~l~~-~~~~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                       +.+++ ..+|.+.+.++.. ++.....    ......            ++  ..+.+++++..++..+..+.+.+.|+
T Consensus       229 ~~~~v~~~~dG~~~~V~~~~-~~v~~~~~~~~~v~~~p------------~~--~~~~~~~dg~~~~~~s~~g~V~ViD~  293 (426)
T 3c75_H          229 PTVFYMNCRDGSLARVDFAD-GETKVTNTEVFHTEDEL------------LI--NHPAFSLRSGRLVWPTYTGKIFQADL  293 (426)
T ss_dssp             TTEEEEEETTSSEEEEECCT-TCCEEEECCCCSCTTSC------------BC--SCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred             CcEEEEEcCCCCEEEEECCC-CcEEEEeeeeeccCCCc------------ee--eEeeecCCCCEEEEEeCCCcEEEEec
Confidence             22222 3346666667632 4443221    111111            11  24578999888777788899999998


Q ss_pred             CCCCCce-eEEec----------CCCCccceeeecCCcccccccceeeeeccc--------Cc-ccC--C-CCCcccccc
Q 014644          334 GVGSAGG-ITVEA----------GKNENRKPILQAAPRARRSSLSNLTRGLYR--------QA-HEN--S-SSGHHELSY  390 (421)
Q Consensus       334 ~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--------~~-~iw--~-~~~~~~~~~  390 (421)
                      ....... ..+..          .......++++++  +.     .+.....+        +. .++  + ........+
T Consensus       294 ~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d--g~-----rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I  366 (426)
T 3c75_H          294 TAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ--SD-----RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI  366 (426)
T ss_dssp             CSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG--GT-----EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             cCCceEEeeeeeeccccccccccccCCceeeEEcCC--CC-----EEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence            6542110 11110          0111223566666  22     33332211        12 344  2 222222233


Q ss_pred             ccccCeEEEEEccCCC-eEEEec--CCceEEEeC
Q 014644          391 NLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA  421 (421)
Q Consensus       391 ~~~~~v~~~~~spd~~-~la~~~--~~~~~i~~~  421 (421)
                      ........++|+||++ +|+++.  ++.+.++++
T Consensus       367 ~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          367 ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            3344678999999999 777776  677988874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=6.2e-07  Score=80.26  Aligned_cols=215  Identities=9%  Similarity=0.060  Sum_probs=121.3

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeC-----CCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeee
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~-----d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      |-..+..|++  +++++++++-..     ++.|.+||+.++++........ .                           
T Consensus        65 ~~~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~-~---------------------------  114 (343)
T 2qe8_A           65 TFDTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP-P---------------------------  114 (343)
T ss_dssp             CCSCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT-T---------------------------
T ss_pred             ceeEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh-h---------------------------
Confidence            4567899999  777777666544     5789999998876322211100 0                           


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----cCCcEEEEeCCCCceeeeeeecC--
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMK--  179 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~d~~i~lwd~~~~~~~~~~~~~~--  179 (421)
                                                . ..+...+..+++++++..+..+     .++.|.+||+. .++..+.+...  
T Consensus       115 --------------------------~-~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~~~~~~~  166 (343)
T 2qe8_A          115 --------------------------I-TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARVLQGYPG  166 (343)
T ss_dssp             --------------------------T-SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEECTTCTT
T ss_pred             --------------------------h-cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEEecCCCc
Confidence                                      0 1223456788888764444333     36789999987 44444443110  


Q ss_pred             --C--CCC--Cc--------------cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccccc---chhhhcccccc
Q 014644          180 --P--SNM--DD--------------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAES  236 (421)
Q Consensus       180 --~--~~~--~~--------------~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~h~~~  236 (421)
                        +  ..+  .+              -...+..++|+|++ +.|+.+..++. ++|.+........   ....+..    
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~----  240 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSK----  240 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTT----
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcc----
Confidence              0  000  00              01236889999999 88888776653 4444432111000   0000000    


Q ss_pred             CCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC
Q 014644          237 HGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD  315 (421)
Q Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  315 (421)
                          -...++......++++++|.++++... +.|.+||... ++........ ...             ...+++|.++
T Consensus       241 ----~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~-~~~-------------~p~~va~~~~  301 (343)
T 2qe8_A          241 ----IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDE-KLS-------------WTDSFNFGSD  301 (343)
T ss_dssp             ----CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECG-GGS-------------CEEEEEECTT
T ss_pred             ----eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECC-cee-------------cCCeeEECCC
Confidence                000112345678999999988888766 8999999843 5432222211 110             1168999999


Q ss_pred             CCEEEEeeCCCeEE
Q 014644          316 GLHFATGSYSNLLR  329 (421)
Q Consensus       316 ~~~l~~~s~dg~i~  329 (421)
                      ++++++.+..+.+.
T Consensus       302 g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          302 GYLYFDCNQLHHSA  315 (343)
T ss_dssp             SCEEEEECCGGGSG
T ss_pred             CcEEEEeCcccccc
Confidence            98877776554443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.81  E-value=1.8e-06  Score=80.84  Aligned_cols=291  Identities=8%  Similarity=0.035  Sum_probs=158.5

Q ss_pred             EEEEeCCCcEEEeecCCce-eEEeeecCCCCCcc------ccc------------ccccccc-eeeccCCCCceeee---
Q 014644           50 FILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVS------SEN------------TLLAEKN-FMNEHNPPSFAHGY---  106 (421)
Q Consensus        50 l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~------~~~------------~~~~~~~-~~~~~~~~~~~~~~---  106 (421)
                      |.+|+..|.|+|+-+.++. ++.+..+......-      +..            |....+. .+.....+......   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            6688899999999998887 66666655433211      000            0001111 11111111111111   


Q ss_pred             --eccc----c-cccceeEEeecccceeeeeeeecCCCCcceEEEee-c-CCCCEEEEE-c------------------C
Q 014644          107 --HLEW----T-ENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-N-SDCETFVSA-D------------------D  158 (421)
Q Consensus       107 --~g~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~~~l~s~-~------------------d  158 (421)
                        +|.+    + ....+.+.|+.+.   ++.+.+.-........+++ + |++++++++ .                  +
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence              1222    1 1225666777776   6656331123345778887 5 899988876 2                  3


Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC---------------eEEEEECCccccc
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSALC  223 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~---------------~v~iwd~~~~~~~  223 (421)
                      +.+.+.|.+ ..+....+.+     .+   ....++++|+| +++++++.+.               .|.+.|.......
T Consensus       175 ~~vtvID~~-t~~v~~qI~V-----gg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          175 NVFTAVDAD-KWEVAWQVLV-----SG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEEEEEETT-TTEEEEEEEE-----SS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             ceEEEEECC-CCeEEEEEEe-----CC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            478889988 4444444421     11   34567899999 8888777553               3555554332110


Q ss_pred             --------ccchhhhccccccCCCc--ccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCc-----------
Q 014644          224 --------DHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------  280 (421)
Q Consensus       224 --------~~~~~~~~~h~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~-----------  280 (421)
                              ...+.+++. .......  ...+. .....++.++|||+++++++.  .+|.++|+.+ .+           
T Consensus       245 v~~Gk~~~i~~V~VID~-~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~  321 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDG-RKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRS  321 (595)
T ss_dssp             HHHTCSEEETTEEEEEC-SGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGG
T ss_pred             ccCCCeeEECcEEEEeC-cccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCccc
Confidence                    000111221 0000000  00111 235678999999999988753  8999999974 21           


Q ss_pred             -ceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEE-eeCCCeEEEEecCCC---------CCceeEEecCCCC
Q 014644          281 -PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVG---------SAGGITVEAGKNE  349 (421)
Q Consensus       281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-~s~dg~i~iwd~~~~---------~~~~~~~~~~~~~  349 (421)
                       .+........+                +.++|+|+| .+++ .-.|+.|.+||+.+.         .+.+..+..|..+
T Consensus       322 ~v~~~v~vG~gP----------------~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          322 AVVAEPELGLGP----------------LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             GEEECCBCCSCE----------------EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             ceEEEcCCCCCc----------------ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence             22222222222                689999999 5554 456999999999862         2445566655443


Q ss_pred             c-----cceeeecCCcccccccceeeeecccCc-ccC
Q 014644          350 N-----RKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       350 ~-----~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      .     .....+++  |+     +|++...-.+ ++-
T Consensus       385 Gh~~~~~g~t~~~D--Gk-----~l~~~Nk~skdr~~  414 (595)
T 1fwx_A          385 GHLKTVMGETLDAT--ND-----WLVCLSKFSKDRFL  414 (595)
T ss_dssp             EEEEETTTTSTTCC--SS-----EEEEEESCCTTSSC
T ss_pred             ccceeccceEeCCC--CC-----EEEEcCCCCccccc
Confidence            2     33344555  44     6666655554 543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=4.9e-06  Score=75.20  Aligned_cols=195  Identities=11%  Similarity=0.076  Sum_probs=108.4

Q ss_pred             ceeEEeecccceeeeeeeecCC-CC-cceEEEeecCCCCEEEEEc--------------------CCcEEEEeCCCCcee
Q 014644          115 ATKIANVGNSVHARCQKVYPHA-HD-FNINSISNNSDCETFVSAD--------------------DLRINLWNLEISDQC  172 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~l~s~~--------------------d~~i~lwd~~~~~~~  172 (421)
                      .+.+.|.++.   +.+..+..+ .. .--..+.|+|+++.++++.                    +.+|.+||+. ..+.
T Consensus       165 ~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~  240 (462)
T 2ece_A          165 GILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKR  240 (462)
T ss_dssp             EEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEE
T ss_pred             eEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcE
Confidence            5677777766   666665212 21 2234578899999999873                    6899999998 4566


Q ss_pred             eeeeecCCCCCCccCCCeeEEEE--ecCCCCeEEEEE------cCCeEEEEECCcccccccchhhhccccccCCCcc---
Q 014644          173 FNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKS---  241 (421)
Q Consensus       173 ~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~---  241 (421)
                      ...+++.     ........+.|  +|++ ++++.++      .+++|.+|....+...  ..+.++. ...+....   
T Consensus       241 ~~tI~vg-----~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi-~~~~v~~~lp~  311 (462)
T 2ece_A          241 IHSLTLG-----EENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEI-PAEPLEGNLPE  311 (462)
T ss_dssp             EEEEESC-----TTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEE-CCEECCSSCCG
T ss_pred             eeEEecC-----CCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeC-CCccccccccc
Confidence            6665321     11123455656  9999 6666555      5678887766543211  1111111 00000000   


Q ss_pred             ---cccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCC--cceeEEeeccCcccccccccCCCcceeeeEEEEcC
Q 014644          242 ---FFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG  314 (421)
Q Consensus       242 ---~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  314 (421)
                         -+.+-......|.++|||++|.++..  +.|.+||+...+  +.+..+...... .+............-..++++|
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSp  390 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISR  390 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECT
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcC
Confidence               00111245789999999999988753  899999986322  333333322100 0000000000000015799999


Q ss_pred             CCCEEEEee
Q 014644          315 DGLHFATGS  323 (421)
Q Consensus       315 ~~~~l~~~s  323 (421)
                      ||++|+++.
T Consensus       391 DGk~LyVaN  399 (462)
T 2ece_A          391 DGRRVYVTN  399 (462)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEEc
Confidence            999999887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.77  E-value=8.4e-07  Score=79.48  Aligned_cols=77  Identities=12%  Similarity=0.041  Sum_probs=56.5

Q ss_pred             EEEcCCCCEEEEe-c---------CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE-EEE
Q 014644          253 IKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FAT  321 (421)
Q Consensus       253 ~~~s~~~~~l~~~-~---------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-l~~  321 (421)
                      ++++||++.+..+ .         .+.+.++|+.+ .+.+..+.....+                ..++|+|||++ +++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence            7899999887754 2         22566999987 7777777665543                58999999984 556


Q ss_pred             ee-CCCeEEEEecCCCCCceeEEecCC
Q 014644          322 GS-YSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       322 ~s-~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      .. .++.|.++|+.+. +....+....
T Consensus       332 ~~~~~~~VsVID~~t~-kvv~~I~vg~  357 (368)
T 1mda_H          332 NSAGTEVLDIYDAASD-QDQSSVELDK  357 (368)
T ss_dssp             EETTTTEEEEEESSSC-EEEEECCCCS
T ss_pred             ccCCCCeEEEEECCCC-cEEEEEECCC
Confidence            66 5999999999987 5455554443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.74  E-value=2e-05  Score=71.27  Aligned_cols=316  Identities=9%  Similarity=-0.040  Sum_probs=143.6

Q ss_pred             CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCccccccccccccee-eccCCCCceeeeecccccccceeEEeecccc
Q 014644           47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM-NEHNPPSFAHGYHLEWTENMATKIANVGNSV  125 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  125 (421)
                      +..+.+++.++.|..+|..+++..-..........    .......+. .........++.  .  ..+.+..+|..++ 
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~v~--~--~~g~l~a~d~~tG-  123 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSKEPALLSGGVTVSGGHVYIG--S--EKAQVYALNTSDG-  123 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSCCCCCEEEEEEEETTEEEEE--E--TTSEEEEEETTTC-
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccccCcccccCceEeCCEEEEE--c--CCCEEEEEECCCC-
Confidence            56788888899999999998884433222111000    000000010 011111111111  1  1234455555554 


Q ss_pred             eeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          126 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       126 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                        +.+..+ .............  +..++.+ .++.|..+|..++....+.. .....+...  ........  + ..++
T Consensus       124 --~~~W~~-~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~--~~~~~~~~--~-~~v~  192 (376)
T 3q7m_A          124 --TVAWQT-KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVN-LDMPSLSLR--GESAPTTA--F-GAAV  192 (376)
T ss_dssp             --CEEEEE-ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE-CCC-----C--CCCCCEEE--T-TEEE
T ss_pred             --CEEEEE-eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEe-CCCCceeec--CCCCcEEE--C-CEEE
Confidence              333333 1111111111121  3466666 89999999998444443321 110000000  00112222  2 4677


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCccee
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA  283 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~  283 (421)
                      .++.++.|..+|..+++..      +......+.....+............  .+..+..++ ++.+..+|.++ ++.+.
T Consensus       193 ~g~~~g~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~t-G~~~w  263 (376)
T 3q7m_A          193 VGGDNGRVSAVLMEQGQMI------WQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRS-GQIMW  263 (376)
T ss_dssp             ECCTTTEEEEEETTTCCEE------EEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTT-CCEEE
T ss_pred             EEcCCCEEEEEECCCCcEE------EEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCC-CcEEe
Confidence            7888999999999887643      11100000000000000000011111  234555554 48999999986 77665


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecCCccc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAAPRAR  362 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  362 (421)
                      .......                 ..+..  ++..|+.++.++.|+.+|..++.. .-... .............     
T Consensus       264 ~~~~~~~-----------------~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~-----  318 (376)
T 3q7m_A          264 KRELGSV-----------------NDFIV--DGNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLYN-----  318 (376)
T ss_dssp             EECCCCE-----------------EEEEE--ETTEEEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEET-----
T ss_pred             eccCCCC-----------------CCceE--ECCEEEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEEC-----
Confidence            4432111                 23333  466788888899999999998833 22222 1122222333322     


Q ss_pred             ccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          363 RSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       363 ~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                          ..|..+..+|. ..+  ..++.+.........+.....-.++.+++...++.|+.|+
T Consensus       319 ----~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          319 ----GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ----TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             ----CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence                25677777775 555  2233222211111222111111244444444466799886

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.70  E-value=9.9e-06  Score=68.60  Aligned_cols=169  Identities=15%  Similarity=0.055  Sum_probs=102.6

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-c--CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                      +.++++..+.......++|++++.+++++ .  +++|.+.|+. .++....+.+     ..+ .....+++.  +..+.+
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l-----~~~-~fgeGi~~~--g~~lyv   80 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKM-----DDS-YFGEGLTLL--NEKLYQ   80 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEEC-----CTT-CCEEEEEEE--TTEEEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEec-----CCC-cceEEEEEe--CCEEEE
Confidence            55566622222346799999987666654 3  6899999999 5566655532     111 122345554  413444


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCccee
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~  283 (421)
                      +.-.++.+.++|..+.+..    ..+..              . .-....+++||+.++.+.. +.|.++|..+ .+.+.
T Consensus        81 ~t~~~~~v~viD~~t~~v~----~~i~~--------------g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~  140 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNI----KNFTH--------------Q-MKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIK  140 (266)
T ss_dssp             EETTCSEEEEEETTTTEEE----EEEEC--------------C-SSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEE
T ss_pred             EEecCCEEEEEECCCCcEE----EEEEC--------------C-CCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEE
Confidence            4447799999999887654    22222              0 0112346667887776655 8999999987 67676


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .+.......+          +...+.+.|. +|+..+....++.|.+.|..++
T Consensus       141 ~I~Vg~~~~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          141 KHNVKYNGHR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDG  182 (266)
T ss_dssp             EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred             EEEECCCCcc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence            6664332110          0001567777 6755445546789999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.70  E-value=3e-05  Score=75.96  Aligned_cols=196  Identities=12%  Similarity=0.086  Sum_probs=111.1

Q ss_pred             EEeecCCCCEEEEE-cCC-------------------cEEEEeCCCCceeeeeeecCCCCCCc--cCCCeeEEEEecCCC
Q 014644          143 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC  200 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~d~-------------------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~  200 (421)
                      .+++.|+..+++.+ .++                   .|..+|.+++....+ +...+.....  ...++.......+| 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~-~~~~~~d~wd~~~~~~~~l~d~~~~G-  316 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH-YQTTPGDAWDYTATQHMILAELPIDG-  316 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE-EESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe-eecCCcccccccCCCCcEEEeeccCC-
Confidence            56788888888887 665                   399999995444443 3211110000  11222222333355 


Q ss_pred             C---eEEEEEcCCeEEEEECCcccccccchh---hhcccccc---------------CCCcc--ccccc--ccceeEEEE
Q 014644          201 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAES---------------HGSKS--FFTEI--IASISDIKF  255 (421)
Q Consensus       201 ~---~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~h~~~---------------~~~~~--~~~~~--~~~v~~~~~  255 (421)
                      +   .++.++.+|.++++|..+++.+.....   .+..+...               +....  .....  ...-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            4   788899999999999999876411000   01100000               00000  00000  001224788


Q ss_pred             cCCCCEEEEec----------------------------------------------CCeEEEEECCCCCcceeEEeecc
Q 014644          256 ANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       256 s~~~~~l~~~~----------------------------------------------~~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      +|+..++++..                                              ++.|+.||+.+ ++.+..+..+.
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~  475 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT  475 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence            88877666531                                              16689999987 88777766554


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  358 (421)
                      ..                ....+...+.+++.|+.||.|+.||.+++ +++-.++ ++......+.+..+
T Consensus       476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEET
T ss_pred             Cc----------------cCccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCcccCceEEEEC
Confidence            32                23355567788999999999999999998 4444444 33333345566554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.69  E-value=6.3e-06  Score=74.52  Aligned_cols=158  Identities=10%  Similarity=0.094  Sum_probs=100.6

Q ss_pred             eec--CCCCEEEE-E-cCCcEEEEeCCCCc---eeeeeeecCCCCCC-c-cCCCeeEEEEecCCCCeEEEEEcC------
Q 014644          145 SNN--SDCETFVS-A-DDLRINLWNLEISD---QCFNIVDMKPSNMD-D-LTEVITSAEFHPIYCNLLAYSSSR------  209 (421)
Q Consensus       145 ~~~--~~~~~l~s-~-~d~~i~lwd~~~~~---~~~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~s~~~d------  209 (421)
                      .++  +++++|+. + .+++|.++|+.+..   +..++++  +.++. . .......+...|+|  +++++..+      
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie--~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~  163 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE--PEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGP  163 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC--HHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSC
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec--hhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCC
Confidence            346  78888777 5 89999999997332   3444431  00010 0 01134556788997  55565555      


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--------------------CCe
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------------------YMN  269 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~~~  269 (421)
                      +.|.++|..+.+..    ..+.. ...         ...--..+.|+|+++.+++..                    ..+
T Consensus       164 g~v~vlD~~T~~v~----~~~~~-~~~---------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          164 GGILMLDHYSFEPL----GKWEI-DRG---------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             CEEEEECTTTCCEE----EECCS-BCT---------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             CeEEEEECCCCeEE----EEEcc-CCC---------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            78999999987654    33332 000         012234688899999888874                    389


Q ss_pred             EEEEECCCCCcceeEEeecc-CcccccccccCCCcceeeeEEE--EcCCCCEEEEeeC------CCeEEEEecCC
Q 014644          270 LKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSY------SNLLRIFSHGV  335 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~sp~~~~l~~~s~------dg~i~iwd~~~  335 (421)
                      |.+||+.+ ++.+.++.... +..+              ..+.  |+|++++++++++      +++|.+|..+.
T Consensus       230 V~v~D~~~-~k~~~tI~vg~~g~~P--------------~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~  289 (462)
T 2ece_A          230 IHFWDLRK-RKRIHSLTLGEENRMA--------------LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED  289 (462)
T ss_dssp             EEEEETTT-TEEEEEEESCTTEEEE--------------EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred             EEEEECCC-CcEeeEEecCCCCCcc--------------ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence            99999986 77777776542 1110              3444  4999999887774      56888887764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.69  E-value=2.5e-05  Score=76.55  Aligned_cols=332  Identities=9%  Similarity=-0.038  Sum_probs=162.7

Q ss_pred             CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccce-eeccCCCCceeeeecccccccceeEEeecccc
Q 014644           47 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFAHGYHLEWTENMATKIANVGNSV  125 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  125 (421)
                      +..+++++.++.|.-+|..+++..-.............   ..+..+ ...... .. .+..+.  .++.+..+|..++ 
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~-~g-~v~v~~--~dg~l~AlDa~TG-  141 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGE---ACCDAVNRGVAVW-KG-KVYVGV--LDGRLEAIDAKTG-  141 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGG---CTTCSCCCCCEEE-TT-EEEEEC--TTSEEEEEETTTC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccc---ccccCCCCccEEE-CC-EEEEEc--cCCEEEEEECCCC-
Confidence            56678888899999999999884433322211100000   000000 000000 01 111111  1345566666665 


Q ss_pred             eeeeeeeecCC-CCcceEEEeecC---CCCEEEEEc------CCcEEEEeCCCCceeeeeeecCCCC-C-----------
Q 014644          126 HARCQKVYPHA-HDFNINSISNNS---DCETFVSAD------DLRINLWNLEISDQCFNIVDMKPSN-M-----------  183 (421)
Q Consensus       126 ~~~~~~~~~~~-h~~~v~~l~~~~---~~~~l~s~~------d~~i~lwd~~~~~~~~~~~~~~~~~-~-----------  183 (421)
                        +.+..+... +......+..+|   ++..++.+.      ++.|..||.+++....+.. ..+.. .           
T Consensus       142 --~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~-~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          142 --QRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY-TVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             --CEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE-SSCCCTTSCCCSHHHHHH
T ss_pred             --CEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec-ccCCCccccccccccccc
Confidence              444444221 211111222233   454444322      6899999998554444432 11100 0           


Q ss_pred             ----C--------ccCCCeeEEEEecCCCCeEEEEEcCCe-------------------EEEEECCcccccccchhhhcc
Q 014644          184 ----D--------DLTEVITSAEFHPIYCNLLAYSSSRGF-------------------VRLVDMRQSALCDHSARILRD  232 (421)
Q Consensus       184 ----~--------~~~~~v~~~~~~p~~~~~l~s~~~d~~-------------------v~iwd~~~~~~~~~~~~~~~~  232 (421)
                          .        ++...-..++++|+. .+++.++.++.                   |..+|..+++..-..    ..
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~----~~  293 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY----QT  293 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE----ES
T ss_pred             ccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee----ec
Confidence                0        111112367889987 88888887764                   999999998754211    11


Q ss_pred             ccccCCCcccccccccceeEEEEcCCCC---EEEEecC-CeEEEEECCCCCcceeEEeeccC-ccc--------------
Q 014644          233 AAESHGSKSFFTEIIASISDIKFANDGQ---HLLSRDY-MNLKLWDIRMDSTPVATFKIHEH-LRP--------------  293 (421)
Q Consensus       233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~-~~~--------------  293 (421)
                         .+.....+. ....+.......+|+   .++.++. |.++++|.++ ++++........ ...              
T Consensus       294 ---~~~d~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~  368 (689)
T 1yiq_A          294 ---TPGDAWDYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGMDMKTGRPILDEE  368 (689)
T ss_dssp             ---STTCCSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEEETTTTEEEECHH
T ss_pred             ---CCccccccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEeccccccccccccccCccCCCcccchh
Confidence               000000000 011122222223565   6777766 9999999987 877644332110 000              


Q ss_pred             -----------ccccccCCCcceeeeEEEEcCCCCEEEEeeC--------------------------------------
Q 014644          294 -----------KLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------------------------------------  324 (421)
Q Consensus       294 -----------~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~--------------------------------------  324 (421)
                                 .+++...-...  ...++++|+..++++.+.                                      
T Consensus       369 ~~~~~~~~~~~~~~p~~~Gg~~--w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~  446 (689)
T 1yiq_A          369 NAAYWKNGKRNLVTPAFWGAHD--WQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGL  446 (689)
T ss_dssp             HHCTTTSSSCEEESSCTTCSSC--SSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHH
T ss_pred             hccccCCCCeeEeCCCcccccC--CCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccC
Confidence                       00000000000  134789998887776532                                      


Q ss_pred             -------CCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccc-ccc
Q 014644          325 -------SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLS  393 (421)
Q Consensus       325 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~-~~~  393 (421)
                             +|.|+.||+.++ +..-.+..+.. ...-.+...       ..+++.|+.|+. +.|  ..++.+.... +..
T Consensus       447 ~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~-~~~g~~~ta-------gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~  517 (689)
T 1yiq_A          447 LEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTI-FNGGTLSTA-------GNLVFEGSADGRVIAYAADTGEKLWEQPAASG  517 (689)
T ss_dssp             HHHHTTCEEEEEEEETTTT-EEEEEEEESSS-CCCCEEEET-------TTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCCCCcceeEEEEECCCC-CeEeEccCCCC-ccCccceEC-------CCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence                   378999999988 33333333332 222233333       237888888888 888  3455444332 222


Q ss_pred             cCeEEEEEccCCCeEEE
Q 014644          394 SKLLHLAWHPTTNLIAC  410 (421)
Q Consensus       394 ~~v~~~~~spd~~~la~  410 (421)
                      ....-+.|..+|+..++
T Consensus       518 ~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          518 VMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCceEEEECCEEEEE
Confidence            22234677889876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=1.4e-05  Score=67.64  Aligned_cols=158  Identities=7%  Similarity=-0.049  Sum_probs=94.5

Q ss_pred             CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh
Q 014644          151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  229 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  229 (421)
                      +..++. .++.+.++|.. ..+.+..+..      + ..  ....+++++ ..++.+..++.|.++|..+.+..    ..
T Consensus        77 ~lyv~t~~~~~v~viD~~-t~~v~~~i~~------g-~~--~g~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~----~~  141 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRR-TLSNIKNFTH------Q-MK--DGWGLATDG-KILYGSDGTSILYEIDPHTFKLI----KK  141 (266)
T ss_dssp             EEEEEETTCSEEEEEETT-TTEEEEEEEC------C-SS--SCCEEEECS-SSEEEECSSSEEEEECTTTCCEE----EE
T ss_pred             EEEEEEecCCEEEEEECC-CCcEEEEEEC------C-CC--CeEEEEECC-CEEEEECCCCeEEEEECCCCcEE----EE
Confidence            344445 89999999998 5666665531      1 01  123366788 66666667899999999886543    22


Q ss_pred             hccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccc-cccccCCCcceee
Q 014644          230 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK-LCDLYNNDSIFDK  307 (421)
Q Consensus       230 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  307 (421)
                      +.. ...       ...-..++.+.|. +|+..+.... +.|.+.|..+ ++++..+......... .......+.   .
T Consensus       142 I~V-g~~-------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v---~  208 (266)
T 2iwa_A          142 HNV-KYN-------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDV---L  208 (266)
T ss_dssp             EEC-EET-------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCC---E
T ss_pred             EEE-CCC-------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCc---e
Confidence            221 000       0001236678888 7755555544 8999999987 8888888643100000 000000001   1


Q ss_pred             eEEEEcCCCCE-EEEeeCCCeEEEEecCCC
Q 014644          308 FECSVSGDGLH-FATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       308 ~~~~~sp~~~~-l~~~s~dg~i~iwd~~~~  336 (421)
                      ..++|+|+++. ++++...+.|+..++...
T Consensus       209 nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          209 NGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            68999999765 456667889988887754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.66  E-value=6.3e-05  Score=64.42  Aligned_cols=174  Identities=11%  Similarity=-0.004  Sum_probs=101.7

Q ss_pred             cceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---CCeEE
Q 014644          139 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVR  213 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---d~~v~  213 (421)
                      .....+++.+++..|.. . ..+.|.+++++ +.......       .........++++|++ ..|+.+..   .+.|.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEE
Confidence            35678999987655555 4 67899999987 32222121       1112456899999976 55555543   36888


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      .+++.....     ..+..            ........++++|++..|..+ .. +.|..+|+.. ............+
T Consensus       150 ~~~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P  211 (267)
T 1npe_A          150 TSHMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP  211 (267)
T ss_dssp             EEETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred             EEecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc
Confidence            888754221     11110            002357899999987777655 34 8999999863 3222222221111


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCceeEEecCC-CCccceeeecC
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA  358 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~  358 (421)
                                      ..++..  +..|+.+. ..+.|..+|..++ .....+.... .....+++.|+
T Consensus       212 ----------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          212 ----------------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             ----------------EEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECS
T ss_pred             ----------------eEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCc
Confidence                            356554  44555444 5689999998877 4444444332 23456666665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=2.3e-05  Score=76.65  Aligned_cols=196  Identities=9%  Similarity=0.042  Sum_probs=110.6

Q ss_pred             EEeecCCCCEEEEE-cCC-------------------cEEEEeCCCCceeeeeeecCCCCCC--ccCCCeeEEEEecCCC
Q 014644          143 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYC  200 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~d~-------------------~i~lwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~  200 (421)
                      .+++.|++..++.+ .++                   +|..+|.+++..... ++..+....  ........+....+|.
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~-~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH-YQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-EESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE-EecCCCcccccccCCCcEEEecccCCc
Confidence            56788888888876 553                   599999985444433 322111000  0011222233344552


Q ss_pred             --CeEEEEEcCCeEEEEECCcccccccchh---hhccccccCCCc--------------ccccccc--cceeEEEEcCCC
Q 014644          201 --NLLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAESHGSK--------------SFFTEII--ASISDIKFANDG  259 (421)
Q Consensus       201 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~h~~~~~~~--------------~~~~~~~--~~v~~~~~s~~~  259 (421)
                        ..++.++.+|.|+++|..+++.......   .+....+ ...+              ..+....  ..-..++++|++
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence              4688889999999999999875421100   0000000 0000              0000000  011367889987


Q ss_pred             CEEEEec-------------------------------------------C-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          260 QHLLSRD-------------------------------------------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       260 ~~l~~~~-------------------------------------------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      .++++..                                           . +.|..||+.+ ++.+..+......    
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----  479 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW----  479 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC----
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC----
Confidence            7776531                                           1 6799999987 8877766543321    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-cCCCCccceeeecC
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAA  358 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  358 (421)
                                  .+..+..++..++.++.||.+++||..++ +.+..+. ++......+.+..+
T Consensus       480 ------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~y~~~  530 (677)
T 1kb0_A          480 ------------NGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVD  530 (677)
T ss_dssp             ------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEET
T ss_pred             ------------cCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCCcccCCEEEEeC
Confidence                        34456667788889999999999999998 4444443 33333344555444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.57  E-value=3.9e-08  Score=88.95  Aligned_cols=142  Identities=7%  Similarity=-0.053  Sum_probs=69.4

Q ss_pred             CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccch
Q 014644          149 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  227 (421)
Q Consensus       149 ~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  227 (421)
                      ++..++++ .|+.|+.||..++....+..        .  +.+.+..+.+++ ..+++++.|+.|+.||..+++...   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w---   73 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--------E--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLT---   73 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE--------C--CCSCCCC------CCEEECTTTCCEEEC-----CCSE---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec--------C--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceee---
Confidence            46677887 99999999998444444331        1  334444455666 677777899999999998876431   


Q ss_pred             hhhccccccCCCcccccccccce-eEEEEcCCCCEEEEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcce
Q 014644          228 RILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF  305 (421)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (421)
                       .+..+.            ...+ ....+. ++..+++++ ++.++.||.++ ++.+..+..+..               
T Consensus        74 -~~~~~~------------~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~~---------------  123 (369)
T 2hz6_A           74 -KLPFTI------------PELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAFA---------------  123 (369)
T ss_dssp             -ECSCCH------------HHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------
T ss_pred             -eeeccC------------ccccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCCc---------------
Confidence             111100            0001 011111 234555554 48999999987 877766654331               


Q ss_pred             eeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          306 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       306 ~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                          ..++|++..+++++.|+.|+.||..+++.
T Consensus       124 ----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A          124 ----DSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             -------------EEEEEEEEEEECCCSSSSSC
T ss_pred             ----ccccccCCEEEEEecCCEEEEEECCCCCE
Confidence                23456888899999999999999998844

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.57  E-value=3.3e-05  Score=64.69  Aligned_cols=166  Identities=16%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                      +.++++......-...|.|+ ++.++.++ .+|  .|+.+|++ +++..+.+.+.        .........+++ ..|+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~--------~~~FgeGit~~g-~~ly  100 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG--------KRYFGEGISDWK-DKIV  100 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC--------TTCCEEEEEEET-TEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC--------CccceeEEEEeC-CEEE
Confidence            55666622222335788998 66666665 555  89999999 55555554321        223333333445 4444


Q ss_pred             EEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcce
Q 014644          205 YSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV  282 (421)
Q Consensus       205 s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~  282 (421)
                      ... .++.+.+||..+.+..    ..+..              ..  ....+++|++.|+.++. +.|.++|..+ .+.+
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~----~ti~~--------------~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~  159 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQV----RSFNY--------------DG--EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPV  159 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEE----EEEEC--------------SS--CCCCEEECSSCEEECCSSSEEEEECTTT-CSEE
T ss_pred             EEEeeCCEEEEEECccCcEE----EEEEC--------------CC--CceEEecCCCEEEEECCCCeEEEEcCCC-CeEE
Confidence            444 6889999999987654    22322              11  22334467777776654 8899999987 7777


Q ss_pred             eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          283 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ..+.......+          +..+..+.|. +|+..+..-.++.|.+.|..++
T Consensus       160 ~~I~V~~~g~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          160 RTITVTAHGEE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             EEEECEETTEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred             EEEEeccCCcc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence            77665432110          0001346666 6765555546889999999887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.55  E-value=9.8e-05  Score=63.18  Aligned_cols=157  Identities=6%  Similarity=-0.080  Sum_probs=95.5

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ..+..++|++++..|..+  ..+.|..++++ +......+       .........++++|++..++++-...+.|.+++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~  107 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTII-------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEE-------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecC-CCCcEEEE-------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence            357789999976655554  68899999997 33322222       112245789999997624444444668999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec----CCeEEEEECCCCCcceeEEeeccCcc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +......    .....             .......++++|++..|..+.    .+.|..+++.  +.....+...... 
T Consensus       108 ~~g~~~~----~~~~~-------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~~~~~~-  167 (267)
T 1npe_A          108 MDGTQRR----VLFDT-------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILAQDNLG-  167 (267)
T ss_dssp             TTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEECTTCS-
T ss_pred             cCCCCEE----EEEEC-------------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEEECCCC-
Confidence            8643211    11111             013568999999755554432    2578888875  3333333211100 


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                                   ....++++|++..|+.+. ..+.|.++|+...
T Consensus       168 -------------~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          168 -------------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             -------------CEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             -------------CCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence                         016899999877665554 5689999998753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.52  E-value=0.00094  Score=66.80  Aligned_cols=247  Identities=11%  Similarity=0.061  Sum_probs=136.5

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCC-CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ...|.++...++|.+.+...+ -|.+|+.. ........ ..+. ...-....|.++...++| . |..|+.++-|..|+
T Consensus       262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~~~-~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFASYS-SNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEEEC-CCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEEEe-cCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeC
Confidence            356899999988987776654 58889987 33332221 1100 001134679999999887 4 55577777788888


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccc-cc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP-KL  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~  295 (421)
                      ...+...     .+..   .+. ..  .-....|.++...++|.+.+....+.|..|+..+ +. ...+........ .+
T Consensus       337 ~~~~~~~-----~~~~---~~~-~~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l  403 (795)
T 4a2l_A          337 PIRNRFK-----NIRN---IPY-KN--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGI  403 (795)
T ss_dssp             GGGGSSE-----EECC---CTT-SS--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECCC------CC
T ss_pred             CCcccce-----EEcC---CCC-CC--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCC
Confidence            7654321     1110   000 00  0013568999999888766654446799999864 33 333321110000 00


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-----CCCCccceeeecCCcccccccceee
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLT  370 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~  370 (421)
                          ..+   .|.+++..++|+.|..|+.++-|..+|..++.  ...+..     ....+.++...++  +.      |.
T Consensus       404 ----~~~---~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~--g~------lw  466 (795)
T 4a2l_A          404 ----GSN---NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGE--GN------LW  466 (795)
T ss_dssp             ----SCS---CEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSS--SC------EE
T ss_pred             ----CCc---cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCC--CC------EE
Confidence                011   12688888888856667877889999987652  222221     1233444443322  33      33


Q ss_pred             eecccCcccCCC-CCcccccc------c-cccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          371 RGLYRQAHENSS-SGHHELSY------N-LSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       371 ~g~~d~~~iw~~-~~~~~~~~------~-~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .|...|...++. .+......      . ....|.++...++|++.+... ++|+.|+
T Consensus       467 igt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~  523 (795)
T 4a2l_A          467 LGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK  523 (795)
T ss_dssp             EEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred             EEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence            333345444421 11111110      1 135688999999998877666 7788775

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.51  E-value=6e-06  Score=73.13  Aligned_cols=21  Identities=14%  Similarity=0.245  Sum_probs=14.8

Q ss_pred             CCeEEEEeCCCcEEEeecCCce
Q 014644           47 GSMFILSTNDKTIKLWKVRDQK   68 (421)
Q Consensus        47 ~~~l~t~s~d~~v~lwd~~~~~   68 (421)
                      +..+..++.++.|..|| .+++
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~   50 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGS   50 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSC
T ss_pred             CCeEEEEcCCCEEEEEC-CCCc
Confidence            34566677788888888 6665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.51  E-value=7.5e-05  Score=72.98  Aligned_cols=199  Identities=10%  Similarity=-0.046  Sum_probs=107.2

Q ss_pred             eEEEEecCCCCeEEEEEcCC-------------------eEEEEECCcccccccchhhhccccccCCCccccccccccee
Q 014644          191 TSAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  251 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  251 (421)
                      ..++++|++ .+++.++.++                   .|..+|..+++..-..    ..   .+.....+.. .....
T Consensus       246 ~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~----~~---~~~d~wd~~~-~~~p~  316 (677)
T 1kb0_A          246 DSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY----QE---TPGDNWDYTS-TQPMI  316 (677)
T ss_dssp             SCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE----ES---STTCCSCCCC-CSCCE
T ss_pred             cceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE----ec---CCCccccccc-CCCcE
Confidence            467889988 8888877664                   5999999988754211    11   0000000000 11222


Q ss_pred             EEEEcCCC---CEEEEecC-CeEEEEECCCCCcceeEEeeccCc-cc---------------------ccccccCCCcce
Q 014644          252 DIKFANDG---QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL-RP---------------------KLCDLYNNDSIF  305 (421)
Q Consensus       252 ~~~~s~~~---~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~-~~---------------------~~~~~~~~~~~~  305 (421)
                      -+....+|   +.++.++. |.++++|.++ ++++..+...... ..                     ..++...-...+
T Consensus       317 l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w  395 (677)
T 1kb0_A          317 LADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW  395 (677)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred             EEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC
Confidence            23334477   56777766 9999999987 8877665432110 00                     000000000000


Q ss_pred             eeeEEEEcCCCCEEEEeeC-------------------------------------------CCeEEEEecCCCCCceeE
Q 014644          306 DKFECSVSGDGLHFATGSY-------------------------------------------SNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       306 ~~~~~~~sp~~~~l~~~s~-------------------------------------------dg~i~iwd~~~~~~~~~~  342 (421)
                        ..++++|+..++++...                                           .|.|..||+.+++. .-.
T Consensus       396 --~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~  472 (677)
T 1kb0_A          396 --HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWS  472 (677)
T ss_dssp             --SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEE
T ss_pred             --CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-Eee
Confidence              26789999888877543                                           27899999998833 322


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccc-ccccCeEEEEEccCCCeEEE
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY-NLSSKLLHLAWHPTTNLIAC  410 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~-~~~~~v~~~~~spd~~~la~  410 (421)
                      .. +..+.....+...       ...++.++.++. +.|  ..++.+.... +....-.-+.+.++|+.+++
T Consensus       473 ~~-~~~~~~~g~~~~~-------g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          473 VE-HVSPWNGGTLTTA-------GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EE-ESSSCCCCEEEET-------TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cC-CCCCCcCcceEeC-------CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            22 2223333334433       226777888888 888  3344433322 22222234567788876544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.44  E-value=1.2e-05  Score=71.94  Aligned_cols=79  Identities=9%  Similarity=-0.007  Sum_probs=57.7

Q ss_pred             EEEecCCCCeEEEEEc---------CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE-E
Q 014644          193 AEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L  262 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l  262 (421)
                      ++++|++ +.++.+..         ++.+.++|+.+.+..    ..+..              ......++|+|||++ +
T Consensus       269 v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v--------------g~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          269 VAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN--------------GHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             EEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------EEEECEEEECCSSSCEE
T ss_pred             eEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC--------------CCCcceEEECCCCCEEE
Confidence            6899999 66665433         235669999987654    34443              236889999999984 4


Q ss_pred             EEec--CCeEEEEECCCCCcceeEEeeccCc
Q 014644          263 LSRD--YMNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       263 ~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      ++..  ++.|.++|+.+ .+.+..+.....+
T Consensus       330 va~~~~~~~VsVID~~t-~kvv~~I~vg~~P  359 (368)
T 1mda_H          330 YANSAGTEVLDIYDAAS-DQDQSSVELDKGP  359 (368)
T ss_dssp             EEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred             EEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence            5554  49999999997 8888888766655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.44  E-value=3.7e-05  Score=64.36  Aligned_cols=206  Identities=12%  Similarity=0.103  Sum_probs=118.0

Q ss_pred             cccccccccccc--EEEEEEEEcCCCCeEEEEeCCC--cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCC
Q 014644           24 FDYLKSLEIEEK--INRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        24 ~~~~~~~~h~~~--V~~v~~~~~~~~~~l~t~s~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      ++.++.+.|...  ...+.|  + ++.++.+++.+|  .|++.|+++++.......                        
T Consensus        31 ~~vv~~~phd~~~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l------------------------   83 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL------------------------   83 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC------------------------
T ss_pred             eEEEEEecCCCCcccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEec------------------------
Confidence            445555666543  367888  4 567777888776  899999999873322110                        


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeee
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~  177 (421)
                                                         ... .--..++.  +++.|.. . .++.+.+||.+ +.+.+..+.
T Consensus        84 -----------------------------------~~~-~FgeGit~--~g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~  124 (262)
T 3nol_A           84 -----------------------------------GKR-YFGEGISD--WKDKIVGLTWKNGLGFVWNIR-NLRQVRSFN  124 (262)
T ss_dssp             -----------------------------------CTT-CCEEEEEE--ETTEEEEEESSSSEEEEEETT-TCCEEEEEE
T ss_pred             -----------------------------------CCc-cceeEEEE--eCCEEEEEEeeCCEEEEEECc-cCcEEEEEE
Confidence                                               000 00111222  2334444 4 79999999998 566666653


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                      .     .+     ....+++++ ..|+.+..++.|.++|..+.+..    ..+.. ....       ..-..++.+.|. 
T Consensus       125 ~-----~~-----eG~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~----~~I~V-~~~g-------~~~~~lNELe~~-  180 (262)
T 3nol_A          125 Y-----DG-----EGWGLTHND-QYLIMSDGTPVLRFLDPESLTPV----RTITV-TAHG-------EELPELNELEWV-  180 (262)
T ss_dssp             C-----SS-----CCCCEEECS-SCEEECCSSSEEEEECTTTCSEE----EEEEC-EETT-------EECCCEEEEEEE-
T ss_pred             C-----CC-----CceEEecCC-CEEEEECCCCeEEEEcCCCCeEE----EEEEe-ccCC-------ccccccceeEEE-
Confidence            2     11     223344677 66666666788999999886644    22221 0000       001234567776 


Q ss_pred             CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc-cccCCCcceeeeEEEEcCCCCEEEEeeC
Q 014644          258 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNNDSIFDKFECSVSGDGLHFATGSY  324 (421)
Q Consensus       258 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~~~~l~~~s~  324 (421)
                      +|+..+..-. +.|.+.|.++ ++++..+....-.. ... .....+.   ...++|+|+++.|+..+.
T Consensus       181 ~G~lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~-~~~~~~~~~~v---lNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 DGEIFANVWQTNKIVRIDPET-GKVTGIIDLNGILA-EAGPLPSPIDV---LNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTEEEEEETTSSEEEEECTTT-CBEEEEEECTTGGG-GSCSCCSSCCC---EEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEEccCCeEEEEECCC-CcEEEEEECCcCcc-ccccccCcCCc---eEEEEEcCCCCEEEEECC
Confidence            6765555434 8999999987 88888876532110 000 0000111   178999998777666554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.44  E-value=2.2e-05  Score=73.52  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=94.7

Q ss_pred             CCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE-e-cCCCCeEEEEE----------------
Q 014644          148 SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS----------------  207 (421)
Q Consensus       148 ~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~~l~s~~----------------  207 (421)
                      +||++|...  .+..|.+.|++ ..++.+++.+     . .......+++ + |++ .++++++                
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~i-----p-~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEI-----P-NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETT-TTEEEEEEEC-----S-SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred             cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeC-----C-CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence            388888886  57789999999 6676765532     2 1234678887 5 898 7777774                


Q ss_pred             --cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C----------------
Q 014644          208 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M----------------  268 (421)
Q Consensus       208 --~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~----------------  268 (421)
                        .++.+.+.|..+.+..    ..+..              ......++++|+|+++++.+. .                
T Consensus       171 ~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             GGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             cccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence              3457888998876543    22221              123467889999998887642 1                


Q ss_pred             ----------------------eEEEEECCCC-Ccc-eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-
Q 014644          269 ----------------------NLKLWDIRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-  323 (421)
Q Consensus       269 ----------------------~i~i~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-  323 (421)
                                            .|.+.|.++. ++. +..+.....+                .++.++|||+++++++ 
T Consensus       233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~~  296 (595)
T 1fwx_A          233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAGK  296 (595)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEECT
T ss_pred             EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeCC
Confidence                                  2444444420 112 2333322222                5899999999877665 


Q ss_pred             CCCeEEEEecCCC
Q 014644          324 YSNLLRIFSHGVG  336 (421)
Q Consensus       324 ~dg~i~iwd~~~~  336 (421)
                      .+.+|.++|+.+.
T Consensus       297 ~s~~VsVid~~~~  309 (595)
T 1fwx_A          297 LSPTVTVLDVTRF  309 (595)
T ss_dssp             TSSBEEEEEGGGH
T ss_pred             CCCeEEEEECccc
Confidence            5889999999854

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=4.6e-05  Score=75.61  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             CCCc-ceEEEeec-CCCCEEEEE-c-CC----cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644          136 AHDF-NINSISNN-SDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       136 ~h~~-~v~~l~~~-~~~~~l~s~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      +|.- .+...+|| |||++||.+ + +|    +|+++|+.++.+.+..      .+.   ....+++|+||+ +.|+...
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------~~~---~~~~~~~WspDg-~~l~y~~  239 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------KVS---GTNGEIVWGPDH-TSLFYVT  239 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------CEE---EECSCCEECSST-TEEEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------ccc---CceeeEEEecCC-CEEEEEE
Confidence            4443 67889999 999999875 2 33    4999999843032110      011   124578999999 7777766


Q ss_pred             cC-----CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---C-CeEEEEECCC
Q 014644          208 SR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRM  277 (421)
Q Consensus       208 ~d-----~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~-~~i~i~d~~~  277 (421)
                      .|     ..|.++++.++...+.  .++..            ........+.|+|||++|+...   . ..|+++|+.+
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~--lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDV--CLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCE--EEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             ECCCCCCCEEEEEECCCCchhcE--EEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            65     2577778766432111  11111            0022356789999999988542   2 5788899875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.35  E-value=7.4e-05  Score=62.57  Aligned_cols=166  Identities=15%  Similarity=0.038  Sum_probs=98.8

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +.++++...-..-...|.|+ ++.++.+. .++.|+++|++ +++..+.+ +.        .........+++..+.+..
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~--------~~~FgeGit~~g~~Ly~lt  112 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RL--------GNIFAEGLASDGERLYQLT  112 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-EC--------TTCCEEEEEECSSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CC--------CCcceeEEEEeCCEEEEEE
Confidence            44555522222334788887 35555565 88889999999 45444433 21        1223322334452444445


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      -.++.+.+||..+.+..    ..+..              ...-..++  +|++.|+.++. +.|.++|..+ .+.+.++
T Consensus       113 w~~~~v~V~D~~Tl~~~----~ti~~--------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I  171 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRE----RTTRY--------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAV  171 (268)
T ss_dssp             SSSCEEEEEETTTTEEE----EEEEC--------------SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred             ccCCEEEEEECCcCcEE----EEEeC--------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEE
Confidence            57899999999987654    22222              11113333  56777776654 8999999987 7777777


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      .......+          +.....+.|. +|+..+..-.++.|.+.|..++
T Consensus       172 ~V~~~g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          172 QVKLRGQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             ECEETTEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred             EeCCCCcc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence            65432211          0011456666 7765544446789999999887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.33  E-value=0.0013  Score=57.50  Aligned_cols=162  Identities=10%  Similarity=0.076  Sum_probs=87.6

Q ss_pred             ceEEEeecCCCCEEEEE-cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          140 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .+..+++.++|+++++. ...  .|..++.. .++.......     . .......++..+++ ..+++-..++.|..+|
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d  144 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID  144 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence            47789999999977765 332  46666765 3443333221     1 11223455555554 4444444688899999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcc--eeEEeeccCcc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTP--VATFKIHEHLR  292 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~--~~~~~~~~~~~  292 (421)
                      ...+....   ..... .....   .....-...+.+  +|++++|..+. . +.|..|++...++.  ...+.....+ 
T Consensus       145 ~~~~~~~v---~~~~~-~~~~~---~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-  214 (306)
T 2p4o_A          145 VVQPSGSI---WLEHP-MLARS---NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-  214 (306)
T ss_dssp             TTTTEEEE---EEECG-GGSCS---STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred             CCCCcEeE---EEECC-ccccc---cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence            76532100   00000 00000   000001234455  78888776653 4 89999998642221  1112111111 


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                                     ..++++++|++.++....+.|.+++..
T Consensus       215 ---------------~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          215 ---------------DDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             ---------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             ---------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence                           478999999887777778889998864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.33  E-value=0.00011  Score=64.77  Aligned_cols=211  Identities=10%  Similarity=0.027  Sum_probs=121.5

Q ss_pred             CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchh
Q 014644          150 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  228 (421)
Q Consensus       150 ~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  228 (421)
                      +..|..+ .++.|..+|.. +.......        .....+.++...+++ . ++.++.++.|..+|.. ++..    .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~--------~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFK--------TKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEE--------CSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEc--------CCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence            3345555 88999999987 44433321        123345666777776 4 6667788999999987 5432    1


Q ss_pred             hhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee
Q 014644          229 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       229 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
                      .+..             ....+.++...++|.+.+..  +.|..+| .+ ++....+......+               .
T Consensus       171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~  218 (330)
T 3hxj_A          171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T  218 (330)
T ss_dssp             EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred             EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence            1111             12356677777788766555  7899999 44 66555544332222               5


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC-Ccc
Q 014644          309 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH  386 (421)
Q Consensus       309 ~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~  386 (421)
                      ++...++|. |..++.++.|..+|. ++ .....+.........+....+  +      .|..+..++. ..++.. +..
T Consensus       219 ~~~~~~~g~-l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~--g------~l~v~t~~ggl~~~d~~g~~~  287 (330)
T 3hxj_A          219 RPAISEDGT-IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGNT--D------TIYFGSYDGHLYAINPDGTEK  287 (330)
T ss_dssp             CCEECTTSC-EEEEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECTT--S------CEEEECTTCEEEEECTTSCEE
T ss_pred             ceEECCCCe-EEEEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcCC--C------eEEEecCCCCEEEECCCCcEE
Confidence            677888775 555777888888874 33 333333333333333443322  2      4666666654 444322 222


Q ss_pred             ccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          387 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       387 ~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                      .........+.++...+++.+.+.+.++.+++.
T Consensus       288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred             EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence            222222345667777788887766556666654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00039  Score=61.22  Aligned_cols=163  Identities=11%  Similarity=0.003  Sum_probs=97.1

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC-------------CCCccCCCeeEEEEec-CCCCeE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-------------NMDDLTEVITSAEFHP-IYCNLL  203 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p-~~~~~l  203 (421)
                      ....+++|.++++++.++ .++.|..|+.. ++.. ..+.....             ........+.++++.+ ++  .|
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGP-NSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QL   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCT-TTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCC-CCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC--cE
Confidence            345678899999877777 88999999887 3322 22211000             0001123578899998 55  45


Q ss_pred             EEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC---------------
Q 014644          204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY---------------  267 (421)
Q Consensus       204 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~---------------  267 (421)
                      +.+...+.|..+|...+...     .+.. .. .      .........+++.+ +|++.++...               
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~-----~~~~-~~-~------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHAT-----QLAT-SV-D------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEETTTEEEEECTTCEECE-----EEES-EE-T------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             EEEECCCCEEEEeCCCCEEE-----Eecc-cC-C------CCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            55555566888887754321     1111 00 0      00013467899999 9987776421               


Q ss_pred             ---CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCC
Q 014644          268 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV  335 (421)
Q Consensus       268 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~  335 (421)
                         +.|..+|..+ ++.......-..+                ..++++|+++.|+.+ +..+.|+.+++..
T Consensus       162 ~~~g~v~~~d~~~-~~~~~~~~~~~~p----------------~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          162 DKTGRLIKYDPST-KETTLLLKELHVP----------------GGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CCCEEEEEEETTT-TEEEEEEEEESCC----------------CEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CCCceEEEEeCCC-CEEEEeccCCccC----------------cceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence               5688888754 4332222221221                589999999876655 5568999999875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.31  E-value=0.00054  Score=56.82  Aligned_cols=167  Identities=15%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cC--CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  204 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  204 (421)
                      +.++.+......-...|.|++ +.++.+. .+  ..|+.+|+. +++..+.+.+.        .........+.+.++.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~--------~~~fgeGi~~~~~~ly~   79 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVP--------PPYFGAGIVAWRDRLIQ   79 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECC--------TTCCEEEEEEETTEEEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCC--------CCcceeEEEEeCCEEEE
Confidence            555666222234467889986 5555554 43  599999999 56665554321        12222323333424444


Q ss_pred             EEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCccee
Q 014644          205 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA  283 (421)
Q Consensus       205 s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~  283 (421)
                      ..-.++.+.+||..+.+..    ..+..              ...-..+  .++++.|+.+.. +.|.++|..+ .+.+.
T Consensus        80 ltw~~~~v~v~D~~tl~~~----~ti~~--------------~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t-~~~~~  138 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPR----ARFRY--------------PGEGWAL--TSDDSHLYMSDGTAVIRKLDPDT-LQQVG  138 (243)
T ss_dssp             EESSSSEEEEEETTTTEEE----EEEEC--------------SSCCCEE--EECSSCEEEECSSSEEEEECTTT-CCEEE
T ss_pred             EEeeCCEEEEEECCcCcEE----EEEeC--------------CCCceEE--eeCCCEEEEECCCCeEEEEeCCC-CeEEE
Confidence            4457899999999987654    22222              1111334  456776666544 8999999987 77777


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++.......+          +..+..+.+. +|+..+..-.+..|.+.|..++
T Consensus       139 ~I~V~~~g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          139 SIKVTAGGRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             EEECEETTEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC
T ss_pred             EEEEccCCcc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCC
Confidence            7665432110          0011355555 6665554446789999999988

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.31  E-value=0.00063  Score=57.19  Aligned_cols=175  Identities=9%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             CCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          135 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       135 ~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      .+-.+.+..++|+|++..|++ . .++.|...|..  ++..+.+.     +.+ ......+++.+++ .++++.-.++.+
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l   93 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDF-VKDLETIEYIGDN-QFVISDERDYAI   93 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSS-CSSEEEEEECSTT-EEEEEETTTTEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCC-CCChHHeEEeCCC-EEEEEECCCCcE
Confidence            555668999999998776666 5 77788888876  55555542     122 2457889999887 666665577889


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECC--CCCcceeEEeecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIR--MDSTPVATFKIHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~--~~~~~~~~~~~~~  289 (421)
                      .++++......    ..... ..-+.   .....+.....++|+|.++.|.++.+ ....||.++  .....+..+....
T Consensus        94 ~~~~v~~~~~i----~~~~~-~~~~~---~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A           94 YVISLTPNSEV----KILKK-IKIPL---QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             EEEEECTTCCE----EEEEE-EECCC---SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred             EEEEcCCCCee----eeeee-ecccc---ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence            99987764321    00111 00000   00112456789999999876666543 333444442  1122222221100


Q ss_pred             CcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~  334 (421)
                       ..       ......+..+++++|. +++++.......+.++|.+
T Consensus       166 -~~-------~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          166 -LQ-------RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             -HH-------HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             -hc-------cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence             00       0001123368999996 5555566667788888866

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.31  E-value=0.00047  Score=60.71  Aligned_cols=255  Identities=8%  Similarity=-0.018  Sum_probs=131.5

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCC--ccc----ccccccccceeeccCCC-Cceeeeec
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSS----ENTLLAEKNFMNEHNPP-SFAHGYHL  108 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~--v~~----~~~~~~~~~~~~~~~~~-~~~~~~~g  108 (421)
                      -.+++|  +++++++.++..++.|..|+..++....+........  .+.    ..+.........+.+.+ .+......
T Consensus        21 p~~i~~--d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           21 PNSFTF--DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCEEC--CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            356778  6788878888899999999988765444332110000  000    00000011222333332 22222111


Q ss_pred             ccccccceeEEeecccceeeeeeeecCC-CCcceEEEeecC-CCCEEEEE-c-----------------CCcEEEEeCCC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNS-DCETFVSA-D-----------------DLRINLWNLEI  168 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~~~l~s~-~-----------------d~~i~lwd~~~  168 (421)
                      .   ...+..++............. .+ .......+++.+ +|++.++. .                 ++.|..||.. 
T Consensus        99 ~---~~~i~~~d~~~g~~~~~~~~~-~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-  173 (322)
T 2fp8_A           99 C---YYHLSVVGSEGGHATQLATSV-DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-  173 (322)
T ss_dssp             T---TTEEEEECTTCEECEEEESEE-TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-
T ss_pred             C---CCCEEEEeCCCCEEEEecccC-CCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-
Confidence            1   111233333222000011111 11 123467899999 99888774 3                 2668888876 


Q ss_pred             CceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccc
Q 014644          169 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  247 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  247 (421)
                      .++.....        ........++++|++ +.|+.+ ...+.|..|++......  ....+..             ..
T Consensus       174 ~~~~~~~~--------~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~  229 (322)
T 2fp8_A          174 TKETTLLL--------KELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IP  229 (322)
T ss_dssp             TTEEEEEE--------EEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CS
T ss_pred             CCEEEEec--------cCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CC
Confidence            33322211        111335679999998 755555 56689999998753210  0011110             12


Q ss_pred             cceeEEEEcCCCCEEEEec-----------CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCC
Q 014644          248 ASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG  316 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~-----------~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  316 (421)
                      + ...+++.++|++.++..           .+.|..+|..  ++.+..+........        .   .+..+++ .++
T Consensus       230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~--------~---~~~~~~~-~~g  294 (322)
T 2fp8_A          230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAG--------E---HFEQIQE-HDG  294 (322)
T ss_dssp             S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTT--------S---CCCEEEE-ETT
T ss_pred             C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCcc--------c---cceEEEE-eCC
Confidence            3 67899999998776642           2557777763  676666654432100        0   1145555 366


Q ss_pred             CEEEEeeCCCeEEEEecCCC
Q 014644          317 LHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       317 ~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ++.++...++.|..+++...
T Consensus       295 ~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          295 LLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEECSSCSEEEEEEC---
T ss_pred             EEEEeecCCCceEEEecccc
Confidence            66666667888999987643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.27  E-value=0.00056  Score=56.70  Aligned_cols=143  Identities=8%  Similarity=0.003  Sum_probs=83.3

Q ss_pred             CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhh
Q 014644          151 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  229 (421)
Q Consensus       151 ~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  229 (421)
                      +..+.. .++.+.+||.+ +.+.+..+..     .+   .-..+  .+++ ..|+.+..++.|.++|..+.+..    +.
T Consensus        76 ~ly~ltw~~~~v~v~D~~-tl~~~~ti~~-----~~---~Gwgl--t~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~  139 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLA-TLTPRARFRY-----PG---EGWAL--TSDD-SHLYMSDGTAVIRKLDPDTLQQV----GS  139 (243)
T ss_dssp             EEEEEESSSSEEEEEETT-TTEEEEEEEC-----SS---CCCEE--EECS-SCEEEECSSSEEEEECTTTCCEE----EE
T ss_pred             EEEEEEeeCCEEEEEECC-cCcEEEEEeC-----CC---CceEE--eeCC-CEEEEECCCCeEEEEeCCCCeEE----EE
Confidence            333445 89999999998 5666666531     11   11344  4667 56666667889999999886644    22


Q ss_pred             hccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccccc--ccCCCccee
Q 014644          230 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFD  306 (421)
Q Consensus       230 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  306 (421)
                      +.. ...+       ..-..++.+.+. +|+..+..-. ..|.+.|.++ ++++..+....-.. ....  ....+..  
T Consensus       140 I~V-~~~g-------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~-~~~~~~~~~~~vl--  206 (243)
T 3mbr_X          140 IKV-TAGG-------RPLDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVP-DADALTDSTNDVL--  206 (243)
T ss_dssp             EEC-EETT-------EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGST-TTTSCCCTTSSCE--
T ss_pred             EEE-ccCC-------cccccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcc-ccccccCCcCCce--
Confidence            222 0000       001245666766 6765554434 8999999997 88888877542110 0000  0001111  


Q ss_pred             eeEEEEcCCCCEEEEee
Q 014644          307 KFECSVSGDGLHFATGS  323 (421)
Q Consensus       307 ~~~~~~sp~~~~l~~~s  323 (421)
                       ..++++|+++.|+..+
T Consensus       207 -NGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          207 -NGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             -EEEEEETTTTEEEEEE
T ss_pred             -EEEEEcCCCCEEEEEC
Confidence             7899999866655544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.25  E-value=0.00059  Score=61.50  Aligned_cols=152  Identities=13%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC---e-eEEEEecCCCCeEEEEEcCCeEEEEECCcccccc
Q 014644          150 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  224 (421)
Q Consensus       150 ~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~  224 (421)
                      +..++.+ .++.|..+|..++....+.- .....-......   + .....  .+ ..++.++.++.+..+|..+++.. 
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~~-  262 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQIM-  262 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEE-CCC-----------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCEE-
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcEE-
Confidence            3466667 89999999998444433321 110000000000   1 11111  13 56777888999999999887643 


Q ss_pred             cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-CCeEEEEECCCCCcceeEEeeccCcccccccccCCCc
Q 014644          225 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS  303 (421)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (421)
                           +...             ......+...  +..+..++ ++.+..+|..+ ++.+..........  .        
T Consensus       263 -----w~~~-------------~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--~--------  311 (376)
T 3q7m_A          263 -----WKRE-------------LGSVNDFIVD--GNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--L--------  311 (376)
T ss_dssp             -----EEEC-------------CCCEEEEEEE--TTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--C--------
T ss_pred             -----eecc-------------CCCCCCceEE--CCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--c--------
Confidence                 2220             1122333333  44555554 48999999986 77665543111110  0        


Q ss_pred             ceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          304 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       304 ~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                          .....  .+..|+.++.+|.|+.+|..++ .......
T Consensus       312 ----~~~~~--~~~~l~v~~~~g~l~~~d~~tG-~~~~~~~  345 (376)
T 3q7m_A          312 ----TSPVL--YNGNLVVGDSEGYLHWINVEDG-RFVAQQK  345 (376)
T ss_dssp             ----CCCEE--ETTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             ----cCCEE--ECCEEEEEeCCCeEEEEECCCC-cEEEEEe
Confidence                12222  2467888999999999999987 4433333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.20  E-value=0.00027  Score=59.16  Aligned_cols=203  Identities=10%  Similarity=0.047  Sum_probs=116.5

Q ss_pred             cccccccccc--EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           26 YLKSLEIEEK--INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        26 ~~~~~~h~~~--V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .++.+.|...  ...+.|  + ++.++.+.+.+|.|++.|+++++.....                              
T Consensus        45 Vv~~~phd~~~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------------------------------   91 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME------------------------------   91 (268)
T ss_dssp             EEEEEECCTTCCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE------------------------------
T ss_pred             EEEEEcCCCccccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE------------------------------
Confidence            4445555433  467888  3 4678888889999999999998722111                              


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  182 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~  182 (421)
                                                   + .... --..+++.. +++.+.. .++.+.+||.+ +.+.+..+..    
T Consensus        92 -----------------------------l-~~~~-FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~----  134 (268)
T 3nok_A           92 -----------------------------R-LGNI-FAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRY----  134 (268)
T ss_dssp             -----------------------------E-CTTC-CEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEEC----
T ss_pred             -----------------------------C-CCCc-ceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeC----
Confidence                                         1 1100 011233332 3344445 89999999998 6666666632    


Q ss_pred             CCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE
Q 014644          183 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       183 ~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                       .+.   -..++  +++ ..|+.+..++.|.++|..+.+..    ..+.. ...+       ..-..++.+.|. +|+..
T Consensus       135 -~~e---GwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g-------~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          135 -SGE---GWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRG-------QPVELINELECA-NGVIY  194 (268)
T ss_dssp             -SSC---CCCEE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEE
T ss_pred             -CCc---eeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCC-------cccccccccEEe-CCEEE
Confidence             111   13343  567 66776667899999999887654    22222 0000       001245677777 77655


Q ss_pred             EEecC-CeEEEEECCCCCcceeEEeeccCcccccc-cccCCCcceeeeEEEEcCCCCEE-EEe
Q 014644          263 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-DLYNNDSIFDKFECSVSGDGLHF-ATG  322 (421)
Q Consensus       263 ~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~~~~l-~~~  322 (421)
                      +..-. +.|.+.|.++ ++++..+....-.. ... .....+.+  ...++++|+++.| ++|
T Consensus       195 anvw~s~~I~vIDp~T-G~V~~~Idl~~L~~-~~~~~~~~~~~v--lNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPAT-GTVVGVIDASALTR-AVAGQVTNPEAV--LNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTT-CBEEEEEECHHHHH-HHTTTCCCTTCC--EEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCC-CcEEEEEECCCCcc-cccccccCcCCc--eEEEEEcCCCCEEEEeC
Confidence            54434 8999999987 88888876532100 000 00000111  1789999975554 444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.20  E-value=0.0019  Score=54.24  Aligned_cols=176  Identities=11%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce--eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ....+++.+++.++++. .++.+.++++.....  ......... ...........++|+|.+ +.|+++.......+|.
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~  148 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK  148 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence            46677888888887887 788999998874443  222222110 012234557899999998 6777776655555555


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEE-EEecC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      +. +............ ..-.     -......+.+++++|....+ +.... ..+..+|..  ++++..+....+.-. 
T Consensus       149 ~~-g~~~~~~l~i~~~-~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~-  218 (255)
T 3qqz_A          149 VN-GLLSSNELHISKD-KALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG-  218 (255)
T ss_dssp             EE-STTCSSCCEEEEC-HHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG-
T ss_pred             Ec-ccccCCceeeecc-hhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC-
Confidence            54 1100000011100 0000     00012357899999965444 44444 889999975  666666654432100 


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      +.     ..+--.-.++|.++|+ |+..++-+.++.+.-
T Consensus       219 l~-----~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          219 LS-----HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             CS-----SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred             cc-----cccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence            00     0000115899999998 555688787777754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.14  E-value=0.0088  Score=59.78  Aligned_cols=245  Identities=11%  Similarity=0.015  Sum_probs=131.8

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      ...|.++...++|.+.+...++-|..|+.. ... +..+...+..-.-....|.++...++| . |..|+.++-|..||.
T Consensus       309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~  384 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPI-RNR-FKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNP  384 (795)
T ss_dssp             SSCEEEEEECTTSCEEEEESSSCEEEECGG-GGS-SEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECT
T ss_pred             CCcEEEEEEeCCcCEEEEECCCCeEEeCCC-ccc-ceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcC
Confidence            356899999999988776676778888876 222 222211100001123568999888887 4 555777767899998


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      .++...     .+......+.    ..-....|.++...++|+.|..|+. +.|..+|..+ ++ ...+......     
T Consensus       385 ~~~~~~-----~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~-----  448 (795)
T 4a2l_A          385 ITQRFT-----SYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQ-----  448 (795)
T ss_dssp             TTCCEE-----EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSC-----
T ss_pred             CCCcEE-----EEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCC-----
Confidence            765422     1110000000    0001356889999888984444544 7799999875 43 3333211100     


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec-------CCCCccceeeecCCccccccccee
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-------GKNENRKPILQAAPRARRSSLSNL  369 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l  369 (421)
                        ....   .|.++...++|.+.+. +. +-|.+||..++ . ...+..       ....+..+...++  +.      |
T Consensus       449 --l~~~---~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~~--g~------l  511 (795)
T 4a2l_A          449 --LVNE---NVYAILPDGEGNLWLG-TL-SALVRFNPEQR-S-FTTIEKEKDGTPVVSKQITTLFRDSH--KR------L  511 (795)
T ss_dssp             --CSCS---CEEEEEECSSSCEEEE-ES-SCEEEEETTTT-E-EEECCBCTTCCBCCCCCEEEEEECTT--CC------E
T ss_pred             --cCCC---eeEEEEECCCCCEEEE-ec-CceeEEeCCCC-e-EEEccccccccccCCceEEEEEECCC--CC------E
Confidence              0011   1267888888876554 44 45888887764 1 111111       1133444443332  33      3


Q ss_pred             eeecccCcccCCC-CCccc------cccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          370 TRGLYRQAHENSS-SGHHE------LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       370 ~~g~~d~~~iw~~-~~~~~------~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      -.|...|...++. .+...      ........|.++...++|.+.++... +|+.|+
T Consensus       512 Wigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d  568 (795)
T 4a2l_A          512 WIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFN  568 (795)
T ss_dssp             EEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEE
T ss_pred             EEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeEC
Confidence            3333344433411 11110      00112356889999999987665554 888875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.13  E-value=0.0045  Score=55.96  Aligned_cols=162  Identities=10%  Similarity=0.043  Sum_probs=93.4

Q ss_pred             cceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC-CeEEE
Q 014644          139 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-~~v~i  214 (421)
                      .....+++.+.+..|.. - ..+.|.+.+++ +......+       .........++++|.+ ..|+.+. .. +.|..
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l~-------~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVLL-------WQSLEKPRAIALHPME-GTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEEE-------CSSCSCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEee-------cCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEE
Confidence            34567888875555544 4 67788888887 33222222       2223456899999977 5555444 34 67888


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +++......    .....             .-...+.|+++|++..|..+. . +.|..+|+.  +.....+.......
T Consensus       230 ~~~dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~  290 (386)
T 3v65_B          230 SSMDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH  290 (386)
T ss_dssp             EETTSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS
T ss_pred             EeCCCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC
Confidence            887643211    11111             023568999998777776653 4 889999986  33222222111100


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                                    ..++++. .+....+-...+.|..++..++.. ...+.
T Consensus       291 --------------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~-~~~i~  326 (386)
T 3v65_B          291 --------------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN-QEIIR  326 (386)
T ss_dssp             --------------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS-CEEEE
T ss_pred             --------------ceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc-eEEEc
Confidence                          1467773 445555666678898888666633 34443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.10  E-value=0.003  Score=61.65  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             EEEEecCCCCeEEEEEcCC-------------------eEEEEECCcccccccchhhhccccccCCCcccccccccceeE
Q 014644          192 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      .++++|+. .+++.++.++                   .|..+|..+++..-+...  ..|     ....+. ...+...
T Consensus       234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~--~~~-----~~wd~~-~~~~~~~  304 (668)
T 1kv9_A          234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV--TPG-----DSWDFT-ATQQITL  304 (668)
T ss_dssp             CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES--STT-----CCSCCC-CCSCEEE
T ss_pred             ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec--CCC-----cccccc-CCCCcEE
Confidence            57888887 7888887766                   489999999875421100  000     000000 0122222


Q ss_pred             EEEcCCCC---EEEEecC-CeEEEEECCCCCcceeEE
Q 014644          253 IKFANDGQ---HLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       253 ~~~s~~~~---~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      ..+..+|+   .++.++. |.++++|..+ ++++...
T Consensus       305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~  340 (668)
T 1kv9_A          305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE  340 (668)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred             EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence            23334665   5666765 9999999987 8777544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.08  E-value=0.00037  Score=69.12  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=72.3

Q ss_pred             CeeEEEEe-cCCCCeEEEEEc-CC----eEEEEECCcc-cccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          189 VITSAEFH-PIYCNLLAYSSS-RG----FVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       189 ~v~~~~~~-p~~~~~l~s~~~-d~----~v~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .+...+|| ||| ++|+.+.. +|    +|+++|+.++ +...   ..+                ......++|+|||+.
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~----------------~~~~~~~~WspDg~~  234 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKV----------------SGTNGEIVWGPDHTS  234 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCE----------------EEECSCCEECSSTTE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccc----------------cCceeeEEEecCCCE
Confidence            67889999 999 77775543 33    5999999887 4221   111                112457899999988


Q ss_pred             EEEec-C-----CeEEEEECCCCCcc--eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEE
Q 014644          262 LLSRD-Y-----MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRI  330 (421)
Q Consensus       262 l~~~~-~-----~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~i  330 (421)
                      |+... +     ..|+.+++.+ ++.  ...+......            .  ..++.|+|||++|+..+.   ...|++
T Consensus       235 l~y~~~d~~~~~~~v~~~~lgt-~~~~~~lv~~~~~~~------------~--~~~~~~SpDg~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          235 LFYVTKDETLRENKVWRHVMGK-LQSEDVCLYEEHNPL------------F--SAFMYKAADTNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             EEEEEECTTCCEEEEEEEETTS-CGGGCEEEEECCCTT------------C--EEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             EEEEEECCCCCCCEEEEEECCC-CchhcEEEEecCCCc------------e--EEEEEECCCCCEEEEEecCCCCceEEE
Confidence            77542 2     2578888865 322  2223221111            0  147899999999886653   446889


Q ss_pred             EecCCC
Q 014644          331 FSHGVG  336 (421)
Q Consensus       331 wd~~~~  336 (421)
                      +|+.++
T Consensus       300 ~d~~~~  305 (751)
T 2xe4_A          300 LDLRKG  305 (751)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.03  E-value=0.004  Score=60.73  Aligned_cols=183  Identities=14%  Similarity=0.136  Sum_probs=100.6

Q ss_pred             EEeecCCCCEEEEE-cCC-------------------cEEEEeCCCCceeeeeeecCCCCCCc--cCCCeeEEEEecCCC
Q 014644          143 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC  200 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-~d~-------------------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~  200 (421)
                      .+++.|+...++.+ .++                   .|..+|.+++....+ ++..+.....  ...+.....+..++ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~-~~~~~~~~wd~~~~~~~~~~d~~~~G-  311 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH-YQVTPGDSWDFTATQQITLAELNIDG-  311 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-EESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE-eecCCCccccccCCCCcEEEEeccCC-
Confidence            46777877788777 655                   499999985444433 3211100000  11223333334465 


Q ss_pred             C---eEEEEEcCCeEEEEECCcccccccchh---hhccccc----cCC--Ccccccc--------cc--cceeEEEEcCC
Q 014644          201 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SHG--SKSFFTE--------II--ASISDIKFAND  258 (421)
Q Consensus       201 ~---~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~h~~----~~~--~~~~~~~--------~~--~~v~~~~~s~~  258 (421)
                      +   .++.++.+|.+.++|..+++.......   .+.....    .+.  ....+..        ..  ..-..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            4   688889999999999999875411000   0000000    000  0000000        00  00123677776


Q ss_pred             CCEEEEe------------------------------------cC-CeEEEEECCCCCcceeEEeeccCcccccccccCC
Q 014644          259 GQHLLSR------------------------------------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN  301 (421)
Q Consensus       259 ~~~l~~~------------------------------------~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (421)
                      ..++...                                    .. +.|..||+.+ ++.+-+.......          
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----------  460 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----------  460 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC----------
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC----------
Confidence            5554431                                    12 7799999987 8877666544322          


Q ss_pred             CcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          302 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       302 ~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                            ....+...+.+++.++.||.|+.||.+++ +....++.
T Consensus       461 ------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~~~  497 (668)
T 1kv9_A          461 ------NGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEA  497 (668)
T ss_dssp             ------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEEC
T ss_pred             ------cCceeEeCCCEEEEECCcccchhhhhhcC-hhheEecC
Confidence                  23344456778889999999999999998 44444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.90  E-value=0.007  Score=58.99  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=46.4

Q ss_pred             eEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC-----CeE
Q 014644          141 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----GFV  212 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-----~~v  212 (421)
                      ..++++..++++++.|  .+..+.+||..+ .. ...+    ..+.... .-.+++..+++ ++++.|+ .+     ..+
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t-~~-W~~~----~~~~~~R-~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSS-DS-WIPG----PDMQVAR-GYQSSATMSDG-RVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGG-TE-EEEC----CCCSSCC-SSCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcC-Cc-eeEC----CCCCccc-cccceEEecCC-eEEEEeCcccCCcccccc
Confidence            3456777899999987  567899999983 32 2222    1122111 11345566788 8888887 34     568


Q ss_pred             EEEECCccc
Q 014644          213 RLVDMRQSA  221 (421)
Q Consensus       213 ~iwd~~~~~  221 (421)
                      .+||..+.+
T Consensus       317 e~yd~~t~~  325 (656)
T 1k3i_A          317 EVYSPSSKT  325 (656)
T ss_dssp             EEEETTTTE
T ss_pred             eEeCCCCCc
Confidence            999998754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.85  E-value=0.03  Score=55.76  Aligned_cols=248  Identities=11%  Similarity=0.035  Sum_probs=129.5

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee-------cCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  210 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~  210 (421)
                      ...|.++...++|.+.+....+-|.++|.. .........       .....-.-....|.++...++| . |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQ-QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETT-CC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCC-CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence            346889988888877665554567888887 332211110       0000001234578999888887 4 55567677


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccC
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      -|..++.......     .+.. ........  ......|.++...++|.+.+....+.|..||..+ +. ...+.....
T Consensus       334 Gl~~~~~~~~~~~-----~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~  403 (781)
T 3v9f_A          334 GINFISNAPPTFH-----TWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-RV-AIYNKENRE  403 (781)
T ss_dssp             CEEEECSSCCSCE-----EEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-EE-EECC-----
T ss_pred             eEEEeCCCCCcce-----eecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-Ce-EEEccCCCC
Confidence            7888887754321     1110 00000000  0013568999998888766554446688899753 22 221111000


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec---CCCCccceeeecCCcccccccc
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GKNENRKPILQAAPRARRSSLS  367 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  367 (421)
                      .        ....   |.++...++|.+. .|+.++-|..++..++ . ...+..   ....+.++...++  +.     
T Consensus       404 ~--------~~~~---v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~~d~~--g~-----  462 (781)
T 3v9f_A          404 L--------LSNS---VLCSLKDSEGNLW-FGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFYEDKN--KK-----  462 (781)
T ss_dssp             C--------CCSB---EEEEEECTTSCEE-EEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEEECTT--SE-----
T ss_pred             C--------CCcc---eEEEEECCCCCEE-EEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEEECCC--CC-----
Confidence            0        0111   2677877777754 4677677888887655 2 122211   1233444443332  22     


Q ss_pred             eeeeecccCcccC-CCCCcccccc------ccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          368 NLTRGLYRQAHEN-SSSGHHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       368 ~l~~g~~d~~~iw-~~~~~~~~~~------~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                       |..|...|...+ ...+......      .....|.++...++|.+.+....++|+.|+
T Consensus       463 -lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~  521 (781)
T 3v9f_A          463 -IWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT  521 (781)
T ss_dssp             -EEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred             -EEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence             333433444333 1111111110      113578899999999887766667787775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.83  E-value=0.015  Score=51.71  Aligned_cols=157  Identities=10%  Similarity=0.055  Sum_probs=91.9

Q ss_pred             cceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC-CeEEE
Q 014644          139 FNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-~~v~i  214 (421)
                      .....+++.+.+..|. +- ..+.|.+.+++ +......+       .........++++|.+ ..|+.+. .. +.|..
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~-------~~~l~~P~~iavdp~~-g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVLL-------WQSLEKPRAIALHPME-GTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CTTCSCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEEE-------eCCCCCcceEEEecCc-CeEEEeccCCCCEEEE
Confidence            3457788887555554 44 67889999987 33222221       2223456899999976 4454443 44 77888


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      +++......    .....             .-...+.++++|++..|..+. . +.|..+|+.  +.....+...... 
T Consensus       187 ~~~dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~-  246 (349)
T 3v64_C          187 SSMDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLP-  246 (349)
T ss_dssp             EETTSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCS-
T ss_pred             EeCCCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCC-
Confidence            887643211    11111             123578999999777776653 3 889999986  3332222211110 


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                                   ...++++. .+....+-...+.|...+..++..
T Consensus       247 -------------~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          247 -------------HPFAITVF-EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             -------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             -------------CceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence                         01467773 445555555678888888666633

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.81  E-value=0.0093  Score=52.20  Aligned_cols=150  Identities=9%  Similarity=0.096  Sum_probs=86.1

Q ss_pred             CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE--ecCCCC-eEEEEEcCCeEEEEECC---cccccccchhhhc
Q 014644          158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR  231 (421)
Q Consensus       158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~  231 (421)
                      +++|.+|++......+..+......+..-...++.+|+  +|.... +++....+|.+..|++.   .+....+.++.+.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            68999997753333343331000000011155777888  775423 57777788999999884   3323333345554


Q ss_pred             cccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCC----CcceeEEeeccCcccccccccCCCccee
Q 014644          232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD  306 (421)
Q Consensus       232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (421)
                      .              .+.+..+...+....|..+.+ ..|..++.+..    .+.+..+.. ...            ..+
T Consensus       178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l------------~aD  230 (355)
T 3amr_A          178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHL------------TRD  230 (355)
T ss_dssp             C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSB------------CSC
T ss_pred             C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Ccc------------ccC
Confidence            4              456888999988778887765 44666775422    223322211 111            012


Q ss_pred             eeEEEE--cCCCC-EEEEee-CCCeEEEEecC
Q 014644          307 KFECSV--SGDGL-HFATGS-YSNLLRIFSHG  334 (421)
Q Consensus       307 ~~~~~~--sp~~~-~l~~~s-~dg~i~iwd~~  334 (421)
                      +..+++  .++++ +|++.+ .++++.+||.+
T Consensus       231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            356776  55666 666666 57799999997

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.80  E-value=0.027  Score=53.77  Aligned_cols=59  Identities=8%  Similarity=0.008  Sum_probs=39.1

Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +.|..||+.+ ++.+.++......                .+..+...+..++.++.||.|+.+|.+++ +.+-.++
T Consensus       444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG-~~lw~~~  502 (571)
T 2ad6_A          444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFK  502 (571)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCC-CEEEEEe
Confidence            6888999886 7776666543221                12222334567778999999999999998 4443343

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.70  E-value=0.024  Score=50.39  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=62.5

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC---CCCeEEEEEcC-----C
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----G  210 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~d-----~  210 (421)
                      .....++|.|+|+++++-.++.|++++ .  +......++.  ...........++|+|+   +..+.++-...     .
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~--g~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-E--GRLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-T--TEEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-C--CCccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            346799999999977766669999998 4  2221111111  11223456789999998   41344433332     5


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      .|..++...+... ....++..   .+..    .........++|.|||.+.++.
T Consensus       106 ~v~r~~~~~~~~~-~~~~l~~~---~p~~----~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGERGV-LDRVVLDG---IPAR----PHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEE---ECCC----TTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcC-ceEEEEEe---CCCC----CCCCcCCceEEECCCCCEEEEE
Confidence            6777877643211 10111111   0000    0001234689999999777764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.68  E-value=0.031  Score=51.21  Aligned_cols=155  Identities=8%  Similarity=-0.047  Sum_probs=87.8

Q ss_pred             cceEEEeecCC--CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCC----e
Q 014644          139 FNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----F  211 (421)
Q Consensus       139 ~~v~~l~~~~~--~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~----~  211 (421)
                      .....++|.|+  ...|..+ ..+.|+.+|.. .+......        ........+++++++ + |+.+...+    .
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~-~g~v~~~~--------~~~~~P~giavd~dG-~-lyVad~~~~~~~~  207 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV-NQYVDIKT--------TNIGQCADVNFTLNG-D-MVVVDDQSSDTNT  207 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETT-TTEEEEEC--------CCCSCEEEEEECTTC-C-EEEEECCSCTTSE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECC-CCEEEEee--------cCCCCccEEEECCCC-C-EEEEcCCCCcccc
Confidence            34678999984  3445555 34899999986 34433322        233557899999999 7 44444321    1


Q ss_pred             -EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeec
Q 014644          212 -VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH  288 (421)
Q Consensus       212 -v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~  288 (421)
                       +...+.. +.....  ..+.              .-.....++++| +|.+.++-.. +.|+.+|..+ +.....+...
T Consensus       208 gv~~~~~~-~~~~~~--~~~~--------------~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~  269 (433)
T 4hw6_A          208 GIYLFTRA-SGFTER--LSLC--------------NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMM  269 (433)
T ss_dssp             EEEEECGG-GTTCCE--EEEE--------------ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEEC
T ss_pred             eEEEEECC-CCeecc--cccc--------------ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEecc
Confidence             2222221 111000  0000              123457789999 6665555444 8899999864 5442222211


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCC
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV  335 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~  335 (421)
                      ....  .           ...++|+|++++|+.+ ...+.|+.++...
T Consensus       270 ~~~~--~-----------~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          270 DTKG--S-----------NFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             SCCS--S-----------CEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCC--C-----------cccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            1100  0           0469999999966555 4568899988763

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.67  E-value=0.014  Score=50.68  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=80.0

Q ss_pred             EEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec--CCCCCCccCCCeeEEEEecCCCCeEEE-EEcCCeEEEEEC
Q 014644          142 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDM  217 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d~~v~iwd~  217 (421)
                      ..++..+++..+++- .++.|..+|.......+.....  ..............+  +|++ ..|+. -...+.|..+|+
T Consensus       120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~  196 (306)
T 2p4o_A          120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPV  196 (306)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEB
T ss_pred             CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEe
Confidence            344445555555555 6888888887622111111100  000001111234455  7887 55544 446789999998


Q ss_pred             Cc-ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          218 RQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       218 ~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      .. +...  ....+..              ......++++++|++.++... +.|.++|..  ++............   
T Consensus       197 ~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~--G~~~~~~~~~~~~~---  255 (306)
T 2p4o_A          197 DSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--RSTTIIAQAEQGVI---  255 (306)
T ss_dssp             CTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT--CCEEEEECGGGTCT---
T ss_pred             CCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC--CCEEEEeecccccC---
Confidence            75 2211  0011111              134678999999987766654 889999874  54422111111100   


Q ss_pred             ccccCCCcceeeeEEEEc---CCCCEEEEeeCCC
Q 014644          296 CDLYNNDSIFDKFECSVS---GDGLHFATGSYSN  326 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~s---p~~~~l~~~s~dg  326 (421)
                                ...+++|.   |+++.|+..+..+
T Consensus       256 ----------~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          256 ----------GSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ----------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ----------CceEEEEecccCCCCEEEEECCCC
Confidence                      11689998   8887777666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.025  Score=51.86  Aligned_cols=72  Identities=11%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcCCeEEEEE
Q 014644          140 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~iwd  216 (421)
                      ....++++| ++.++++- .++.|..++.. .........     .. .......++|+|++ +.| ++-...+.|..++
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEe
Confidence            456788999 77777776 78899999987 333322221     11 12346789999999 744 4445678899987


Q ss_pred             CCc
Q 014644          217 MRQ  219 (421)
Q Consensus       217 ~~~  219 (421)
                      ...
T Consensus       299 ~d~  301 (430)
T 3tc9_A          299 YDW  301 (430)
T ss_dssp             EET
T ss_pred             CCc
Confidence            653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.66  E-value=0.026  Score=49.40  Aligned_cols=156  Identities=11%  Similarity=0.062  Sum_probs=92.1

Q ss_pred             ceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--cCCeEEEE
Q 014644          140 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV  215 (421)
Q Consensus       140 ~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~d~~v~iw  215 (421)
                      ....+++.+.+..| ++- ..+.|.+++++ +.. .+.+.      .........+++.|.+ ..|+.+.  ..+.|...
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~-~~~l~------~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSL-RKVLF------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA  150 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEEE------CSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCc-EEEEE------eCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence            45678888755444 444 67899999987 322 22220      1233456899999976 5555555  25778888


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      ++......    .....             .-...+.++++|++..|..+. . +.|..+|+.  +.....+......  
T Consensus       151 ~~dG~~~~----~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~--  209 (318)
T 3sov_A          151 GMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLP--  209 (318)
T ss_dssp             ETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCS--
T ss_pred             EcCCCCeE----EEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCC--
Confidence            87642211    11111             023568999999777776653 4 889999986  3333333211110  


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                                  ...++++.. +..+.+-...+.|..++..+++.
T Consensus       210 ------------~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          210 ------------HPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             ------------CEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             ------------CceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence                        014677753 34444555678999999877744

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.63  E-value=0.049  Score=51.93  Aligned_cols=85  Identities=14%  Similarity=0.041  Sum_probs=45.4

Q ss_pred             EEEEecCCCCeEEEEEcC----------------CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644          192 SAEFHPIYCNLLAYSSSR----------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  255 (421)
                      .+++.+.. ..++.++.+                +.|..+|.++++..      |.. ...+.....+.....++ -+..
T Consensus       239 ~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~------W~~-~~~~~d~~d~~~~~~p~-l~~~  309 (571)
T 2ad6_A          239 WYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK------WGY-QKTPHDEWDFAGVNQMV-LTDQ  309 (571)
T ss_dssp             CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE------EEE-ESSTTCSSCCCCCCCCE-EEEE
T ss_pred             eEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE------EEe-cCCCCcccccccCCCCE-EEec
Confidence            35677776 666666532                36899999988743      211 00000000000001122 1223


Q ss_pred             cCCCC---EEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          256 ANDGQ---HLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       256 s~~~~---~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      .++|+   .++.++. |.++++|..+ ++.+....
T Consensus       310 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~  343 (571)
T 2ad6_A          310 PVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK  343 (571)
T ss_dssp             EETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             ccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence            34674   4556665 9999999987 77776654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.0036  Score=57.47  Aligned_cols=154  Identities=8%  Similarity=0.016  Sum_probs=90.5

Q ss_pred             ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CC----eE
Q 014644          140 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----FV  212 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~----~v  212 (421)
                      ....++++| ++..|..+ ..+.|+.+|+. .+......        ........++|++++ +.|+.+.. ++    .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccceE
Confidence            457889998 45556655 44889999987 33333322        133557899999999 75555553 22    23


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC-CCCEEEEecC-CeEEEEECCCCCcceeEEeeccC
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ..++ ..+.....  ..+..              ......++++| +|.++++-.. +.|..++... +...........
T Consensus       208 ~~~~-~~g~~~~~--~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~  269 (430)
T 3tc9_A          208 YILT-RESGFKVI--TELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDS  269 (430)
T ss_dssp             EEEE-GGGTSCSE--EEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSS
T ss_pred             EEEe-CCCceeee--eeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCC
Confidence            3333 33321100  01111              23467889999 6665555544 8899999864 332222222111


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV  335 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~  335 (421)
                      ..              ...++|+|+|++|+.. ...+.|+.++.+.
T Consensus       270 ~~--------------P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          270 GW--------------EFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SC--------------CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             Cc--------------ceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            10              1689999999965554 4578899988663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.08  Score=52.72  Aligned_cols=239  Identities=10%  Similarity=0.026  Sum_probs=128.6

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCC---CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      ...|.++...++|.+.+...++-|..++... . .+..+...+.   .-......|.++...+++ . |..|+.++-|..
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~  387 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFISNAP-P-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINV  387 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEECSSC-C-SCEEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEE
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEeCCCC-C-cceeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEE
Confidence            4568999998888877766667788888762 2 2222211000   001123568999888876 4 555676666888


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ||..++...     .+.. . .       ......|.++...++|.+.+....+.|..+|.++ ++ ...+... ..   
T Consensus       388 ~~~~~~~~~-----~~~~-~-~-------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~-~~---  447 (781)
T 3v9f_A          388 FENGKRVAI-----YNKE-N-R-------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQIIELE-KN---  447 (781)
T ss_dssp             EETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EEECCST-TT---
T ss_pred             EECCCCeEE-----EccC-C-C-------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EEEeccC-CC---
Confidence            998765321     1100 0 0       0113578899988888766654446788898764 33 2222211 00   


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-----CCCccceeeecCCccccccccee
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNL  369 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l  369 (421)
                           ...   .|.++...++|.+.+ |+. +-|..+|..++.. .......     ...+..+...++  +.      |
T Consensus       448 -----~~~---~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~--g~------l  508 (781)
T 3v9f_A          448 -----ELL---DVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSE--GR------F  508 (781)
T ss_dssp             -----CCC---CEEEEEECTTSEEEE-EET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTT--CC------E
T ss_pred             -----CCC---eEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCC--CC------E
Confidence                 011   126778887776544 455 5688899876522 2221111     123444433322  32      3


Q ss_pred             eeecc-cCcccCCC-CCccccc---cc-cccCeEEEEEccCCCeEEEecCCce-EEEe
Q 014644          370 TRGLY-RQAHENSS-SGHHELS---YN-LSSKLLHLAWHPTTNLIACANGNSL-FFHY  420 (421)
Q Consensus       370 ~~g~~-d~~~iw~~-~~~~~~~---~~-~~~~v~~~~~spd~~~la~~~~~~~-~i~~  420 (421)
                      -.|.. .|...++. .+.....   .+ ....|.++...++|.+.++.. +++ +.|+
T Consensus       509 Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          509 WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            33333 44422321 1111111   11 135688999999998766655 666 7664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.51  E-value=0.012  Score=50.99  Aligned_cols=175  Identities=9%  Similarity=0.009  Sum_probs=101.6

Q ss_pred             ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC--cc-CCCeeEEEE---ecCCCCeEEEEEc---
Q 014644          140 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DL-TEVITSAEF---HPIYCNLLAYSSS---  208 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~---~p~~~~~l~s~~~---  208 (421)
                      --.+++|.+ ++.++++. ..++|..|+.. .+....+ ...  .+.  +- ...+..+.|   .|++ .++++...   
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~a   88 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKS   88 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEccccc
Confidence            345788976 56666677 89999999987 3322222 111  100  11 124579999   6887 77775432   


Q ss_pred             ----------CCeEEEEECC---cccccccchhhhccccccCCCcccccc-cccceeEEEEcCCCCEEEEecC--CeEEE
Q 014644          209 ----------RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY--MNLKL  272 (421)
Q Consensus       209 ----------d~~v~iwd~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--~~i~i  272 (421)
                                +..|..||+.   +++.....  .+......  . +...+ .......++..++|+..++++.  +.|..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~--dL~~~~~~--~-~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSV--NFEKVQDE--F-EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEE--ESHHHHHH--H-HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEe--cCcccccc--c-cccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence                      6789999998   55432100  00000000  0 00000 0235889999999998887653  55555


Q ss_pred             EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      .+..  ++.+..+........         .....+.++++|+|..|++....|.|..+|+..
T Consensus       164 V~pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          164 VSAD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECTT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeCC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            5543  554444432221100         011226899999999888776699999999884

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.48  E-value=0.057  Score=48.92  Aligned_cols=161  Identities=9%  Similarity=0.014  Sum_probs=94.7

Q ss_pred             CCcceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc--CCeE
Q 014644          137 HDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFV  212 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--d~~v  212 (421)
                      .......+++.+.+..|. +- ..+.|.+.+++ +......+       .........++++|.+ ..|+.+..  .+.|
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~-g~ly~td~~~~~~I  227 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI  227 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTT-TEEEEEECSSSCCE
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEeccc-CeEEEEeCCCCCEE
Confidence            345677888887544444 44 67889999987 33322222       1223457899999976 55555542  3678


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeec-c
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH-E  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~-~  289 (421)
                      ...++......    .....             .-.....|++++++..|..+. . +.|..+|+.  +.....+... .
T Consensus       228 ~~~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~  288 (400)
T 3p5b_L          228 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEK  288 (400)
T ss_dssp             EEEETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSS
T ss_pred             EEEeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCC
Confidence            88887643211    11111             124678999999877777664 3 889999986  3333333221 1


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      ...             ...++++. .+.++.+-...+.|..+|..++...
T Consensus       289 ~l~-------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          289 RLA-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             TTS-------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CCC-------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            111             00466663 3344445566788998987776443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.46  E-value=0.059  Score=48.58  Aligned_cols=172  Identities=8%  Similarity=-0.039  Sum_probs=97.8

Q ss_pred             EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECCcc
Q 014644          142 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQS  220 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~~~  220 (421)
                      .|.+..+ ..+|+.+....|+..++. +......+       . ....+..++|++.+ ..|+.+ ...+.|..+++...
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~-~~~~~~~~-------~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPH-RSEYTLLL-------N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTT-SCCCEEEE-------C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSC
T ss_pred             eECCccc-cceeEeecCccceeeccC-CCcEEEEe-------c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCC
Confidence            3444455 446666655678888887 33322222       1 22457899999876 455544 46788999998764


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccc
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL  298 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  298 (421)
                      ...    ..+..             .......+++.+.+..|... .. +.|.+.++.  +.....+......       
T Consensus       149 ~~~----~~~~~-------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~~~~~l~~~~l~-------  202 (386)
T 3v65_B          149 NVE----EVVST-------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLWQSLE-------  202 (386)
T ss_dssp             CEE----EEECS-------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTT--SCSCEEEECSSCS-------
T ss_pred             CcE----EEEeC-------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CCceEEeecCCCC-------
Confidence            321    11111             02345778898866555544 33 788888876  3332222211100       


Q ss_pred             cCCCcceeeeEEEEcCCCCEEEEee-CC-CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          299 YNNDSIFDKFECSVSGDGLHFATGS-YS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       299 ~~~~~~~~~~~~~~sp~~~~l~~~s-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                             ....++++|.+..|+... .. +.|+..++... .............+.+++.+.
T Consensus       203 -------~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          203 -------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             -------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGG
T ss_pred             -------CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCC
Confidence                   016899999766665554 34 67888887643 333333333344567778765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.43  E-value=0.058  Score=47.86  Aligned_cols=174  Identities=7%  Similarity=-0.042  Sum_probs=98.0

Q ss_pred             ceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECC
Q 014644          140 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR  218 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~  218 (421)
                      ...|.+..+ ..+|+.+....|+..++. +......+       . ....+..++|++.+ ..|+.+ ...+.|..+++.
T Consensus        35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~-g~~~~~~~-------~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFANRIDIRQVLPH-RSEYTLLL-------N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             SSCEEESSS-CCEEEEECBSCEEEECTT-SCCEEEEE-------C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred             CCccccccc-CceeEeecccceEEEeCC-CCeeEEee-------c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecC
Confidence            345556566 345666644568888887 33322222       1 22447899999876 555544 467889989887


Q ss_pred             cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      .....    .....             .......+++.+.+..|... .. +.|.+.++.  +.....+......     
T Consensus       104 g~~~~----~~~~~-------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~~~l~-----  159 (349)
T 3v64_C          104 GSNVE----EVVST-------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GAHRKVLLWQSLE-----  159 (349)
T ss_dssp             SCSCE----EEECS-------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECTTCS-----
T ss_pred             CCCce----EEEeC-------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC--CCceEEEEeCCCC-----
Confidence            64321    11111             02345789999865555444 44 889999986  3333333211110     


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEee-CC-CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGS-YS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                               ....++++|.+..|+... .. +.|...+++.. .........-...+.+++.+.
T Consensus       160 ---------~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          160 ---------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             ---------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETT
T ss_pred             ---------CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCC
Confidence                     016899999766655444 44 78888887643 222222222334466777765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.41  E-value=0.075  Score=48.69  Aligned_cols=182  Identities=9%  Similarity=0.030  Sum_probs=94.0

Q ss_pred             ceEEEeecC-CCCEEEEE-cCCcEEEEeCCCCcee-eeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEE
Q 014644          140 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLV  215 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iw  215 (421)
                      ....+++.| ++.++++- .++.|+.++.. .+.. ......      +....-..++|+|++ +.|+.+ ...+.|+.+
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence            456788999 77777676 78889999987 3333 222211      111223479999999 755444 466889998


Q ss_pred             ECCc--ccccccchhhhccccccCCCc--ccccccccceeEEEE---------cCCCCEEEEecC-CeEEEEECCCCCcc
Q 014644          216 DMRQ--SALCDHSARILRDAAESHGSK--SFFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP  281 (421)
Q Consensus       216 d~~~--~~~~~~~~~~~~~h~~~~~~~--~~~~~~~~~v~~~~~---------s~~~~~l~~~~~-~~i~i~d~~~~~~~  281 (421)
                      +...  +...  ....+..........  ......-.....+++         .++|.++++-.. +.|+.++..  +. 
T Consensus       301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G~-  375 (433)
T 4hw6_A          301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--GR-  375 (433)
T ss_dssp             EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--SE-
T ss_pred             eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--CC-
Confidence            8653  2110  001111100000000  000001234677999         677766666555 889998852  53 


Q ss_pred             eeEEeeccCc-ccccccc--cCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecC
Q 014644          282 VATFKIHEHL-RPKLCDL--YNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       282 ~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~  334 (421)
                      +..+.+.... .......  -....+.....++++ ++|.++++=..++.|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            3344332110 0000000  000011122688999 566666665667788887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.33  E-value=0.15  Score=50.44  Aligned_cols=163  Identities=8%  Similarity=-0.008  Sum_probs=96.2

Q ss_pred             CCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-C-CeE
Q 014644          137 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFV  212 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d-~~v  212 (421)
                      .......|++.+.+..|..+  ..+.|.+.+++ +.....++       .........|+++|.+ ..|+.+.. . +.|
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeE
Confidence            34556788898877666654  67899999998 33322222       1223457899999986 55555542 2 678


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEe-ecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFK-IHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~-~~~  289 (421)
                      ...++......    .++..             .-.....|++++.+..|..+. . +.|..+++.  +.....+. ...
T Consensus       540 ~~~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~  600 (791)
T 3m0c_C          540 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEK  600 (791)
T ss_dssp             EEEETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTT
T ss_pred             EEEecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCC
Confidence            88887653211    11111             124678999998777776653 3 789999986  43333332 211


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEE-EeeCCCeEEEEecCCCCCceeE
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                      ...             ...++++.  +..|+ +-...+.|...+..++......
T Consensus       601 ~l~-------------~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          601 RLA-------------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTS-------------SEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ccC-------------CCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            111             00356653  33444 4445688888887777444333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.32  E-value=0.12  Score=49.33  Aligned_cols=55  Identities=9%  Similarity=0.006  Sum_probs=35.2

Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      +.|..||+.+ ++.+-........                .+-.....+.+++.++.||.|+.||.++++.+
T Consensus       453 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          453 GQIKAYNAIT-GDYKWEKMERFAV----------------WGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEECCC-CCEEeEecCCCCc----------------cCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence            6778888876 6665555422111                11112224667778999999999999998443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.28  E-value=0.05  Score=48.11  Aligned_cols=166  Identities=10%  Similarity=0.093  Sum_probs=92.3

Q ss_pred             ceEEEeecCCCCEEEEE-------------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec--CCCCeEE
Q 014644          140 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA  204 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-------------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~  204 (421)
                      ...+++..|+|..++++             .+|.|.++|.++.....+.+......+.........+.+.+  ++..+|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45566778888766665             58899999987332222222111100122334567777766  3422444


Q ss_pred             EEE-c--CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---------------
Q 014644          205 YSS-S--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---------------  266 (421)
Q Consensus       205 s~~-~--d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------------  266 (421)
                      .+. .  +.+|.+|++............+..    +        .-...+.+.+.++|.+.++..               
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g----~--------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH----K--------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC----T--------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEecccc----C--------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            443 3  567888877653222111111111    0        124678999999999877753               


Q ss_pred             --C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          267 --Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       267 --~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                        . +.|.-+|.   ++......+-..+                +.++|+||++.|+.+. ..+.|+.|++...
T Consensus       199 ~~~~g~vyr~d~---~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          199 GLAWSFVTYYSP---NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             TCCCEEEEEECT---TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCccEEEEEEC---CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence              1 33444443   3222222222222                6899999998877665 5789999998743

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.26  E-value=0.019  Score=55.98  Aligned_cols=113  Identities=5%  Similarity=-0.044  Sum_probs=66.9

Q ss_pred             EEeecC-CCCEEEEE-cCC-----------cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-c
Q 014644          143 SISNNS-DCETFVSA-DDL-----------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S  208 (421)
Q Consensus       143 ~l~~~~-~~~~l~s~-~d~-----------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~  208 (421)
                      ..++.+ ++++++.| .+.           .+.+||..++. -.....+.    ..+.....++++.+++ ++++.|+ .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~----~~~~~~~~~~~~~~~g-~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTV----TKHDMFCPGISMDGNG-QIVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEE----CSCCCSSCEEEECTTS-CEEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccC----CCCCCccccccCCCCC-CEEEeCCCC
Confidence            556666 88888886 432           58889987432 11111000    1223334467788888 8888888 4


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--C-----CeEEEEECCC
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-----MNLKLWDIRM  277 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-----~~i~i~d~~~  277 (421)
                      +..+.+||..+.+-...  ..+.      .        ...-.+++..++|++++.|+  +     ..+.+||..+
T Consensus       264 ~~~v~~yd~~t~~W~~~--~~~~------~--------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPG--PDMQ------V--------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             TTCEEEEEGGGTEEEEC--CCCS------S--------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CCceEEecCcCCceeEC--CCCC------c--------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            56899999887542200  0000      0        11223556667899888775  1     4689999875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.26  E-value=0.15  Score=48.78  Aligned_cols=59  Identities=19%  Similarity=0.139  Sum_probs=38.8

Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +.|..||+.+ ++.+-+.......                ..-.....+.+++.|+.||.++.||.+++ +++-.++
T Consensus       466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~  524 (582)
T 1flg_A          466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQ  524 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred             ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEec
Confidence            7789999987 7776665543221                11111224667888999999999999998 4443443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.19  E-value=0.098  Score=45.60  Aligned_cols=158  Identities=10%  Similarity=0.018  Sum_probs=93.5

Q ss_pred             cceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-C-CeEEE
Q 014644          139 FNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d-~~v~i  214 (421)
                      .....+++.+.+..| ++- ..+.|.+.+++ +......+       .........++++|.+ ..|+.+.. . +.|..
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~  147 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  147 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCC-CEEEEEccCCCCeEEE
Confidence            446788888755444 454 78899999987 33222222       1122456899999976 55554443 2 67888


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeec-cCc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIH-EHL  291 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~-~~~  291 (421)
                      .++.....     ..+..            ..-.....++++|++..|..+. . +.|..+|+.  +.....+... ...
T Consensus       148 ~~~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~  208 (316)
T 1ijq_A          148 GGLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL  208 (316)
T ss_dssp             EETTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT
T ss_pred             EcCCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCcc
Confidence            88754221     11100            0023578999999877776654 4 899999986  3333333221 111


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCC
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA  338 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~  338 (421)
                      .             ...++++. .+....+-...+.|..++..++..
T Consensus       209 ~-------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          209 A-------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             S-------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             C-------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            0             01467775 345555556678999999877633

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.19  E-value=0.11  Score=45.85  Aligned_cols=116  Identities=10%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC---CCCeEEEE-E--cCC
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYS-S--SRG  210 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~-~--~d~  210 (421)
                      -...+.++|.|||+++++- ..|.|++++.. .+....+..+ +............++++|+   + ..|+.. +  .+.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEV-PGVSPSGEGGLLGIALSPDYASD-HMVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHH-CEEEEEEECSSSE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeeccc-CceeecCCCCceeeEeccccccC-CEEEEEEecCCCC
Confidence            4457899999999988888 59999999865 3332111111 1122334566899999995   2 334332 2  344


Q ss_pred             eEEEEECCccc----ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          211 FVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       211 ~v~iwd~~~~~----~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      .|.-|.+..+.    .......++..   .+      .........|+|.|||.+.++.
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~---~p------~~~~H~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRG---IP------KGVIHNGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEE---EC------CCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEc---CC------CCCCccCccccCCCCCCEEEEE
Confidence            55556554421    01011111111   00      0112245789999999877764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.16  E-value=0.15  Score=47.12  Aligned_cols=160  Identities=10%  Similarity=0.051  Sum_probs=89.6

Q ss_pred             ceEEEeecC-CCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE-------ecCCCCeEEEEEcC
Q 014644          140 NINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-------HPIYCNLLAYSSSR  209 (421)
Q Consensus       140 ~v~~l~~~~-~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~s~~~d  209 (421)
                      ....|+|.| +...|..+  ..+.|++.|++ .+....+....    .........++|       ++++ ..|+.+...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~~----~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLSSPLNIN----TIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT-TTEEEEEECCT----TSSCSBEEEEEECCCBTTTBCTT-CEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC-CCEEEEEEccC----ccccCCCcEEEEeecccccCCCC-CEEEEEeCC
Confidence            456889998 35555555  44678888887 44444333110    112345789999       9999 766666544


Q ss_pred             C-------eEEEEECCc-ccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC-CeEEEEECC--
Q 014644          210 G-------FVRLVDMRQ-SALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWDIR--  276 (421)
Q Consensus       210 ~-------~v~iwd~~~-~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~-~~i~i~d~~--  276 (421)
                      +       .|.+++... +.... .....+..              -.....++++|++..|.. ... +.|..+|+.  
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--------------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~  279 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--------------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY  279 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--------------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeecc--------------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence            3       255665333 12110 00001111              124568899996555554 444 889999986  


Q ss_pred             -----CCCcc-----------eeE-EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecC
Q 014644          277 -----MDSTP-----------VAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHG  334 (421)
Q Consensus       277 -----~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~  334 (421)
                           + +..           ... +......              ..+.++|+|+|++|+.+ +....|+.++..
T Consensus       280 ~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~--------------~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          280 FKTIKN-GGSWDPIVKNNPNTFKQLFTIADPS--------------WEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHT-TCCCCCBGGGCTTTEEEEEECSSSS--------------CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccC-ceeecccccccccccceeEecCCCC--------------CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                 3 322           112 2111111              01689999999965554 456788886654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.14  E-value=0.19  Score=49.73  Aligned_cols=168  Identities=5%  Similarity=-0.084  Sum_probs=93.1

Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhc
Q 014644          152 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  231 (421)
Q Consensus       152 ~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  231 (421)
                      +|+.+....|+..++. ......++        .....+..++|++.+..++++-...+.|+.+++...........++.
T Consensus       397 ~Ll~an~~~Ir~i~l~-~~~~~~l~--------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLD-RSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEEECBSSEEEECTT-SCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             ccccccccceeEeecc-CCcceeee--------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            5555555567877877 33322222        22355789999996624444444568888888865321000001111


Q ss_pred             cccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeE
Q 014644          232 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE  309 (421)
Q Consensus       232 ~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      .             .......|++.+.++.|..+ .. +.|.+.++.  +.....+......              ....
T Consensus       468 ~-------------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~g  518 (791)
T 3m0c_C          468 R-------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA  518 (791)
T ss_dssp             S-------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEE
T ss_pred             c-------------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------Ccce
Confidence            0             12456789999887666655 34 899999986  4444444322111              0168


Q ss_pred             EEEcCCCCEEEEeeC--CCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          310 CSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       310 ~~~sp~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      +++.|.+.+|+....  .+.|...++... .....+...-...+.+++.+.
T Consensus       519 IaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~  568 (791)
T 3m0c_C          519 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL  568 (791)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT
T ss_pred             EEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecC
Confidence            999998666665543  367888887643 333333333345566676655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.14  E-value=0.01  Score=58.16  Aligned_cols=155  Identities=10%  Similarity=0.032  Sum_probs=85.1

Q ss_pred             ceEEEeecCCC-CEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cC-CeEEEE
Q 014644          140 NINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLV  215 (421)
Q Consensus       140 ~v~~l~~~~~~-~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-~~v~iw  215 (421)
                      ....|++.+.+ .++++- ..+.|.+.++. +.....++       .........++++|.+ ..|+.+. .. +.|..+
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~-------~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEEC-------CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEE-------eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEE
Confidence            35667887544 444444 67889999987 33222222       1122345788899976 4444433 22 567766


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeec-cCcc
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIH-EHLR  292 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~-~~~~  292 (421)
                      ++.....     ..+..            ..-...+.|+|+|++..|..+ .. +.|..+++.  +.....+... ....
T Consensus       525 ~~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~  585 (699)
T 1n7d_A          525 GLNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA  585 (699)
T ss_dssp             CSSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS
T ss_pred             eCCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC
Confidence            6653211     11100            002356789999987666655 34 889999986  3323333211 1100


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                                   ...++++..+ .++++....+.|..++..++
T Consensus       586 -------------~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          586 -------------HPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             -------------SCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             -------------CceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence                         0035666544 34445556788999987766

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.12  E-value=0.12  Score=45.13  Aligned_cols=166  Identities=9%  Similarity=-0.007  Sum_probs=92.6

Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECCcccccccchhhh
Q 014644          152 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARIL  230 (421)
Q Consensus       152 ~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~  230 (421)
                      +|+.+....|+..+++.........       .........++|++.+ ..|+.+ ...+.|..+++..+....   ..+
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~-------~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~~---~~~   74 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIV-------VGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESVQ---NVV   74 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEE-------EEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCCC---EEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEE-------ecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCceE---EEE
Confidence            5555655678889988432112111       1122346789999876 444444 466889888887642110   111


Q ss_pred             ccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee
Q 014644          231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       231 ~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
                      ..             .-.....+++.+.+..|... .. +.|.++++.  +.....+......              ...
T Consensus        75 ~~-------------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d--G~~~~~l~~~~~~--------------~P~  125 (318)
T 3sov_A           75 VS-------------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVLFWQELD--------------QPR  125 (318)
T ss_dssp             EE-------------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCS--------------SEE
T ss_pred             cC-------------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC--CCcEEEEEeCCCC--------------Ccc
Confidence            11             02346789998755555444 44 889999986  3333333211110              016


Q ss_pred             EEEEcCCCCEEEEee--CCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          309 ECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       309 ~~~~sp~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      .+++.|.+..|+...  ..+.|...++... .........-..-+.+++.++
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETT
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEecc
Confidence            899999766666555  3578888887643 222222333334466777765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.12  E-value=0.1  Score=46.87  Aligned_cols=164  Identities=12%  Similarity=0.093  Sum_probs=99.1

Q ss_pred             ecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCc--cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644          146 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       146 ~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      ...+|..++.+.++.||.-++.. +..++.+..     +.  --..|..+..+|+| .+||..+ +..|.|-.+..+...
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~-~~~Yk~L~~-----~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLT-DSLYHSLNF-----SRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSN   99 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTT-CSSCEEEEC-----TTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSC
T ss_pred             EEcCCCEEEEEECCEEEEEECCC-CCcceEEec-----CcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCcccc
Confidence            35578888888889999999873 335666532     21  11257889999999 8887764 568999998843211


Q ss_pred             cc------chh--hhccccccCCCcccccccccceeEEEEcCC---CCEEEEe-cCCeEEEEECCCC-CcceeEEeeccC
Q 014644          224 DH------SAR--ILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSR-DYMNLKLWDIRMD-STPVATFKIHEH  290 (421)
Q Consensus       224 ~~------~~~--~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~-~~~~i~i~d~~~~-~~~~~~~~~~~~  290 (421)
                      ..      ..+  .+..   ++    +......+|..+.|+|-   +..|++- +++.|++||+... .++. .+.....
T Consensus       100 ~~~~~~~~~~q~~ty~l---~~----~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~  171 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSI---DE----EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN  171 (452)
T ss_dssp             CCCHHHHHTTEEEEEEG---GG----CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred             CcccccccccceeEEEc---CC----cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence            10      000  1111   00    00112578999999995   3355554 5599999999752 2333 3321110


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEee--CCCeEEEE
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIF  331 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s--~dg~i~iw  331 (421)
                         .   ....+.+.++.+++|.+++-.|...+  ++|.|+-.
T Consensus       172 ---~---fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          172 ---S---FGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ---E---EESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ---c---cCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence               0   00112224568999999988777755  88888753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.10  E-value=0.13  Score=45.15  Aligned_cols=229  Identities=9%  Similarity=0.031  Sum_probs=112.2

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      ..+.++.+.+ +..++.+.++.|.. ..+ .++..+....    ...+...+..+.+.+++ ..++. +.++.|  |...
T Consensus        80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~D-gG~tW~~~~~----~~~~~~~~~~i~~~~~~-~~~~~-~~~g~v--~~S~  148 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTD-GGQSWSQIPL----DPKLPGSPRLIKALGNG-SAEMI-TNVGAI--YRTK  148 (327)
T ss_dssp             CEEEEEEEET-TEEEEEEETTEEEE-ESS-TTSSCEECCC----CTTCSSCEEEEEEEETT-EEEEE-ETTCCE--EEES
T ss_pred             ccEEEEEecC-CeEEEEECCCeEEE-ECC-CCCCceECcc----ccCCCCCeEEEEEECCC-CEEEE-eCCccE--EEEc
Confidence            3577788876 55555556665443 333 3444443210    01233456778877766 55554 445643  2222


Q ss_pred             cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEE-EEECCCCCcceeEEeeccCccccccc
Q 014644          219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK-LWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      .+.      ..|.. ...        .....+..+.+.|++.+++.+..+.+. -.|-.  +..-..+......      
T Consensus       149 DgG------~tW~~-~~~--------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~~~~------  205 (327)
T 2xbg_A          149 DSG------KNWQA-LVQ--------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRTTSR------  205 (327)
T ss_dssp             STT------SSEEE-EEC--------SCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECCSSS------
T ss_pred             CCC------CCCEE-eec--------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCCCCC------
Confidence            211      12222 000        113467889999999988888665443 34421  2222222211110      


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe-c---CCCCccceeeecCCcccccccceeeeec
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-A---GKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                              .+..+.+.++++.++ .+.+|.+++.+.+.+ ..-..+. .   ....+..+.+.++  +.     .++.+.
T Consensus       206 --------~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~--~~-----~~~~g~  268 (327)
T 2xbg_A          206 --------RLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTP--NE-----VWLAGG  268 (327)
T ss_dssp             --------CEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSS--SC-----EEEEES
T ss_pred             --------ccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCC--CE-----EEEEeC
Confidence                    126788899887654 556788877642212 1111111 1   1123445555543  22     444443


Q ss_pred             ccCcccC-CCCCcccc----ccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          374 YRQAHEN-SSSGHHEL----SYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       374 ~d~~~iw-~~~~~~~~----~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                       ++.-++ ..++..-.    .......+.++.|.+++..+++|.++.++-+
T Consensus       269 -~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          269 -AGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRY  318 (327)
T ss_dssp             -TTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred             -CCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEE
Confidence             332111 11111111    1122356788899888887777777776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.029  Score=51.90  Aligned_cols=116  Identities=13%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             CeeEEEEecC-CCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE-------cCCCC
Q 014644          189 VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF-------ANDGQ  260 (421)
Q Consensus       189 ~v~~~~~~p~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~-------s~~~~  260 (421)
                      ....|+|+|. +.+++++....+.|++.|+..+.+.    .+...   .       .........++|       +++|+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~----~l~~~---~-------~~~~~~p~~ia~~~~~~~~d~~G~  205 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS----SPLNI---N-------TIPTNRIRSIAFNKKIEGYADEAE  205 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE----EEECC---T-------TSSCSBEEEEEECCCBTTTBCTTC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE----EEEcc---C-------ccccCCCcEEEEeecccccCCCCC
Confidence            4678999993 4144444444477999998876543    11111   0       001235789999       99999


Q ss_pred             EEEEecC-C-------eEEEEECCCCCcce-----eEEeeccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCC
Q 014644          261 HLLSRDY-M-------NLKLWDIRMDSTPV-----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSN  326 (421)
Q Consensus       261 ~l~~~~~-~-------~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg  326 (421)
                      +|+.+.+ +       .|.+++....+...     ..+.....+                ..++++|+ +.++++-..++
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p----------------~giavdp~~g~LYvtd~~~g  269 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQC----------------NGATIHPINGELYFNSYEKG  269 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCC----------------CCEEECTTTCCEEEEETTTT
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCc----------------eEEEEcCCCCeEEEEECCCC
Confidence            6666544 3       26666643212321     222221221                47899995 55455566788


Q ss_pred             eEEEEecC
Q 014644          327 LLRIFSHG  334 (421)
Q Consensus       327 ~i~iwd~~  334 (421)
                      .|+.+|+.
T Consensus       270 ~V~r~d~~  277 (496)
T 3kya_A          270 QVFRLDLV  277 (496)
T ss_dssp             EEEEECHH
T ss_pred             EEEEEecc
Confidence            89999987

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.95  E-value=0.17  Score=44.10  Aligned_cols=167  Identities=6%  Similarity=-0.058  Sum_probs=91.2

Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECCcccccccchhhh
Q 014644          152 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARIL  230 (421)
Q Consensus       152 ~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~  230 (421)
                      +|+.+....|+..|+. ......++       . ....+.+++|++.+ ..|+.+ ..++.|..+++............+
T Consensus         3 ~ll~~~~~~I~~i~~~-~~~~~~~~-------~-~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~   72 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLD-RSEYTSLI-------P-NLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI   72 (316)
T ss_dssp             EEEEECBSSEEEEETT-SCCCEEEE-------C-SCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred             EEEEECCCeEEEEECC-CcceEehh-------c-CCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCcccEEEE
Confidence            4566655578889988 33333332       1 23457899999976 555544 456899999987521000000111


Q ss_pred             ccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee
Q 014644          231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       231 ~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
                      ..             .-.....+++++.+..|... .. +.|.++++.  +.....+......              ...
T Consensus        73 ~~-------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~--------------~P~  123 (316)
T 1ijq_A           73 SR-------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPR  123 (316)
T ss_dssp             CS-------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEE
T ss_pred             eC-------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEECCCC--------------Ccc
Confidence            11             01345789998755555444 44 899999986  3333333221110              016


Q ss_pred             EEEEcCCCCEEEEeeC-C-CeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          309 ECSVSGDGLHFATGSY-S-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       309 ~~~~sp~~~~l~~~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      .++++|.+..|+.... . +.|...++... .........-...+.+++.++
T Consensus       124 ~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~  174 (316)
T 1ijq_A          124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL  174 (316)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT
T ss_pred             eEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEecc
Confidence            8999997666655543 2 68888887633 222222223344556777765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.93  E-value=0.079  Score=45.96  Aligned_cols=122  Identities=12%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             eEEEee---cCCCCEEEEEc--------------CCcEEEEeCC---CCceeeeeeecCCCCCCc-------cCCCeeEE
Q 014644          141 INSISN---NSDCETFVSAD--------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD-------LTEVITSA  193 (421)
Q Consensus       141 v~~l~~---~~~~~~l~s~~--------------d~~i~lwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~~  193 (421)
                      +..|.|   .|+++++++.+              +..|..+|+.   +.. .+...++... ..+       -......+
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~-~~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKV-QDEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHH-HHHHHHHHSSCCEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccc-cccccccccccccCCcee
Confidence            467777   57776666542              5778889987   333 3332321100 000       11247889


Q ss_pred             EEecCCCCeEEEEEcC-CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEE
Q 014644          194 EFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  271 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~  271 (421)
                      +..++| +..++++.. +.|...+......     ..+.. ....      .......+.|+++|+|..|++... +.|.
T Consensus       143 avD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~-~~~~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~  209 (334)
T 2p9w_A          143 AQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAW-ESGN------GGQRPGYSGITFDPHSNKLIAFGGPRALT  209 (334)
T ss_dssp             EECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEE-CCCC------SSSCCSCSEEEEETTTTEEEEESSSSSEE
T ss_pred             EECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeee-cCCC------cccccCcceEEEeCCCCEEEEEcCCCeEE
Confidence            999999 888888888 8877777654321     11211 0000      001234679999999998888755 9999


Q ss_pred             EEECCC
Q 014644          272 LWDIRM  277 (421)
Q Consensus       272 i~d~~~  277 (421)
                      .+|++.
T Consensus       210 ~fD~~~  215 (334)
T 2p9w_A          210 AFDVSK  215 (334)
T ss_dssp             EEECSS
T ss_pred             EEcCCC
Confidence            999874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.90  E-value=0.19  Score=43.97  Aligned_cols=147  Identities=9%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC----CCC--eEEEEE-c--CCeEEEEECC-
Q 014644          150 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCN--LLAYSS-S--RGFVRLVDMR-  218 (421)
Q Consensus       150 ~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~--~l~s~~-~--d~~v~iwd~~-  218 (421)
                      ..+++.. ..+-+.+||+.  ++.+..+       ..  +.+..+..-|+    +..  ++++.. .  +.+|++|++. 
T Consensus        40 ~s~ii~t~k~~gL~Vydl~--G~~l~~~-------~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLD--GKMLHSY-------NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GCEEEEEETTTEEEEEETT--SCEEEEE-------CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             ccEEEEEcCCCCEEEEcCC--CcEEEEc-------cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            3445554 77899999996  5555544       21  44566655552    201  233333 3  5799999774 


Q ss_pred             -cccccccchhhhccccccCCCcccccccccceeEEEE--cCC-CC-EEEEecC-CeEEEEECCC------CCcceeEEe
Q 014644          219 -QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--AND-GQ-HLLSRDY-MNLKLWDIRM------DSTPVATFK  286 (421)
Q Consensus       219 -~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~--s~~-~~-~l~~~~~-~~i~i~d~~~------~~~~~~~~~  286 (421)
                       ++.+     ..+.. ...+     +......+..+++  +|. ++ +++.... +.+..|++..      ..+.+.++.
T Consensus       109 ~~~~l-----~~i~~-~~~p-----v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A          109 KNGTL-----QSMTD-PDHP-----IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             TTCCE-----EECSC-TTSC-----EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCCce-----eeccc-cccC-----cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence             3221     11110 0000     0000145677888  774 54 4444444 8999988832      134566666


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      .....                ..|...+....|+.+-++..|..++.+
T Consensus       178 lgsq~----------------EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          178 MNSQT----------------EGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CSSCE----------------EEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             CCCCc----------------ceEEEcCCCCeEEEecccceEEEEeCC
Confidence            55433                578888888899999998777666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.87  E-value=0.076  Score=47.17  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC---CCCeEEEEEc---C---
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R---  209 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~---d---  209 (421)
                      .....++|.|+|+++++-.++.|++++..  +. ..+..+.  ...........++++|+   +..+.++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            45689999999987666666999998743  33 1111111  11222356789999997   4144443332   3   


Q ss_pred             -CeEEEEECCcccc-cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          210 -GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       210 -~~v~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                       ..|..|+...... ......++..   .+      .........++|.|||.+.++.
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~---~~------~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDG---IP------GAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEE---EE------CCSSCCCCCEEECTTSCEEEEC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEc---CC------CCCCcCCceEEECCCCcEEEEE
Confidence             5677777654310 0000011111   00      0001234689999999877764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.84  E-value=0.25  Score=44.37  Aligned_cols=117  Identities=7%  Similarity=0.018  Sum_probs=71.3

Q ss_pred             ecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEEC
Q 014644          196 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI  275 (421)
Q Consensus       196 ~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~  275 (421)
                      ..++ ..++.+ .++.||..++..+..    .+.+..    +..     -.-..+..+..+|+|++||..+...|.|..+
T Consensus        29 ~~n~-t~i~~a-~~n~iR~~~i~~~~~----Yk~L~~----~~~-----i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~L   93 (452)
T 3pbp_A           29 SQNG-TRIVFI-QDNIIRWYNVLTDSL----YHSLNF----SRH-----LVLDDTFHVISSTSGDLLCLFNDNEIFVMEV   93 (452)
T ss_dssp             ETTT-TEEEEE-ETTEEEEEETTTCSS----CEEEEC----TTT-----CCCCTTCEEEECTTSSEEEEECSSEEEEEEC
T ss_pred             EcCC-CEEEEE-ECCEEEEEECCCCCc----ceEEec----Ccc-----cccCceeEEEECCCCCEEEEecCCeEEEEEe
Confidence            4455 555544 457888888774321    123222    000     0012577899999999999988789999998


Q ss_pred             CCCCcc-----------eeEEeeccCcccccccccCCCcceeeeEEEEcCC---CCEEEEeeCCCeEEEEecCCC
Q 014644          276 RMDSTP-----------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       276 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      ......           .+.+......         ...--.|..+-|+|-   +..|++-..|+.|++||+...
T Consensus        94 P~~~~~~~~~~~~~~~q~~ty~l~~~~---------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A           94 PWGYSNVEDVSIQDAFQIFHYSIDEEE---------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             CTTCSCCCCHHHHHTTEEEEEEGGGCC-----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cCccccCcccccccccceeEEEcCCcc---------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence            631111           1122221100         000112478999994   668999999999999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.79  E-value=0.28  Score=44.29  Aligned_cols=159  Identities=9%  Similarity=-0.038  Sum_probs=96.2

Q ss_pred             CcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCc---eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          138 DFNINSISNNSDCETFVSA--DDLRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ...+..++|.+.+..|.-+  ..+.|+.+++....   .....+       .........+++.+.+.++.++-...+.|
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-------~~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-------eCCCCCcccEEEEecCCceEEEECCCCeE
Confidence            4567899999866655554  67889999887311   112221       22234578899998552455555567889


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--C-CeEEEEECCCCCcceeEEeecc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      .+.++......    ..+..             .-.....|++.|.+.+|....  . +.|...++.  +.....+....
T Consensus       184 ~~~~~~g~~~~----~l~~~-------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G~~~~~~~~~~  244 (400)
T 3p5b_L          184 SVADTKGVKRK----TLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTEN  244 (400)
T ss_dssp             EEECTTTCSEE----EEEEC-------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--SCSCEEEECSS
T ss_pred             EEEeCCCCceE----EEEeC-------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--CCccEEEEECC
Confidence            99888754311    11111             123578999999766665543  2 678888875  44333332211


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                      -.              ....++++|++..|+.+. ..+.|...|+...
T Consensus       245 l~--------------~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          245 IQ--------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             CS--------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CC--------------ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            00              116899999877776664 4678999998744

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.78  E-value=0.42  Score=46.04  Aligned_cols=154  Identities=8%  Similarity=0.005  Sum_probs=92.4

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc--CCeEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--d~~v~i  214 (421)
                      .....+++.+.+..|..+  ..+.|.+.+++ +.. .+.+.      .........+++.|.. ..|+.+..  .+.|..
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~-~~~l~------~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r  150 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQH-RQVLV------WKDLDSPRALALDPAE-GFMYWTEWGGKPKIDR  150 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-STT-CEEEE------CSSCCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCc-EEEEE------eCCCCCcccEEEccCC-CeEEEeCCCCCCEEEE
Confidence            356778888766655554  67889999987 332 22221      1223456899999965 55555542  467777


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      .++......    .+...              -.....++++++++.|..+. . +.|..+|+.. ... ..+...-...
T Consensus       151 ~~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~-~v~~~~l~~P  210 (628)
T 4a0p_A          151 AAMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR-EVIADDLPHP  210 (628)
T ss_dssp             EETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC-EEEEECCSCE
T ss_pred             EeCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce-EEeeccCCCc
Confidence            777653211    11111              34678999999877777664 3 8899999864 222 3332211111


Q ss_pred             cccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          293 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                                     .++++.. +....+-...+.|...|..++.
T Consensus       211 ---------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          211 ---------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ---------------EEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             ---------------eEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence                           4677754 3444444457889888877763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.75  E-value=0.41  Score=45.63  Aligned_cols=30  Identities=17%  Similarity=0.104  Sum_probs=22.0

Q ss_pred             CCCC---EEEEecC-CeEEEEECCCCCcceeEEee
Q 014644          257 NDGQ---HLLSRDY-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       257 ~~~~---~l~~~~~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      .+|+   .++.++. |.++++|.++ ++++..+..
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~~  364 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSN-GKLQNAFPF  364 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTT-CCEEEEEES
T ss_pred             CCCCEEEEEEEECCCceEEEEECCC-CCEeccccc
Confidence            4674   5666765 9999999987 877766544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.73  E-value=0.45  Score=45.73  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc--CCeEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--d~~v~i  214 (421)
                      .....+++.+.+..|..+  ..+.|.+.+++ +. ..+++.      .........+++.|.+ ..|+.+..  .+.|..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~-~~~~l~------~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r  154 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GS-LRKVLF------WQELDQPRAIALDPSS-GFMYWTDWGEVPKIER  154 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC-SCEEEE------CSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CC-CEEEEE------eCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence            467889999866655554  68899999998 33 222221      1223456789999976 55555543  356666


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEee--ccC
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKI--HEH  290 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~--~~~  290 (421)
                      .++......    .....             .-...+.+++++++..|..+. . +.|..+|+.  +.....+..  ...
T Consensus       155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~  215 (619)
T 3s94_A          155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH  215 (619)
T ss_dssp             EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------
T ss_pred             EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC
Confidence            666542211    11110             123578999999877776654 3 788888886  332222211  111


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      +                .++++..+ ....+-...+.|...|..++.
T Consensus       216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            1                46777655 334444457788888887763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.64  E-value=0.028  Score=55.00  Aligned_cols=157  Identities=9%  Similarity=-0.038  Sum_probs=89.9

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCC---ceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..+..++|.+.+..|..+  ..+.|+.+++...   ......+       .........+++.+.+.+++++-...+.|.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-------~~~~~~P~glavD~~~g~LY~tD~~~~~I~  478 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  478 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-------CSCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-------eCCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence            356788999877666665  6788999998731   1111111       111223567888865525555545668899


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--C-CeEEEEECCCCCcceeEEeeccC
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      ++++......    .++..             .......++++|.+.+|+.+.  . +.|..+++.  +.....+.....
T Consensus       479 v~d~dg~~~~----~l~~~-------------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l~~~~l  539 (699)
T 1n7d_A          479 VADTKGVKRK----TLFRE-------------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENI  539 (699)
T ss_dssp             EEBSSSCCEE----EECCC-------------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEESCSSC
T ss_pred             EEecCCCceE----EEEeC-------------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEEEeCCC
Confidence            9987654211    11111             023457889999766555543  2 567777765  333322211111


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV  335 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~  335 (421)
                      .              ....++|+|++..|+.+ +..+.|..+++..
T Consensus       540 ~--------------~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          540 Q--------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             S--------------SCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             C--------------CccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            0              01589999976555544 4567899999874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.51  E-value=0.22  Score=45.84  Aligned_cols=118  Identities=11%  Similarity=0.063  Sum_probs=61.7

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCC-CCccCCCeeEEEEecC---CCCeEEEEEc-----
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPI---YCNLLAYSSS-----  208 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~---~~~~l~s~~~-----  208 (421)
                      .....|+|.|+|+++++- ..+.|++++.. .+....+..+.... .......+..++|+|+   +..+.++-+.     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            356799999999988887 44578888764 23322222211100 0113456789999995   4134343332     


Q ss_pred             -------CCeEEEEECCccc-ccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          209 -------RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       209 -------d~~v~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                             ...|.-+++.... .......++..   .+      .........|+|.|||.+.++..
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~---~p------~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG---LP------SSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEE---EC------CCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEc---CC------CCCCCCCCeEeECCCCeEEEEEC
Confidence                   1245555543221 01111112211   00      00123568999999998777643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.47  E-value=0.4  Score=41.92  Aligned_cols=160  Identities=9%  Similarity=0.002  Sum_probs=89.1

Q ss_pred             CCCcceEEEeecCCCCEEEEEcCCcEE-EEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          136 AHDFNINSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~~d~~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      .+...+..+++.+++.+++.+.++.+. -+|-  .+.....+.      ......+..+.+.+++ ..+ .++.+|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAF  229 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEE
Confidence            445678899999999998888555443 3332  133333221      2234568889999987 544 5567888777


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      .+...+..       |.. ...+.    + .....+..+.+.+++..++++.++.+ .+..+. ++.-..+.......  
T Consensus       230 s~~D~G~t-------W~~-~~~~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~--  292 (327)
T 2xbg_A          230 SDPDNSEN-------WGE-LLSPL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP--  292 (327)
T ss_dssp             EETTEEEE-------ECC-CBCTT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS--
T ss_pred             ecCCCCCe-------eEe-ccCCc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC--
Confidence            65333321       111 00000    0 00235788999998888888877666 333332 43333332111000  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                             .   .+.++.|.++++ +++++.+|.|.-++-
T Consensus       293 -------~---~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          293 -------S---NFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             -------S---CCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             -------C---CeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence                   0   115788876655 555667888776653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.38  E-value=0.74  Score=44.00  Aligned_cols=85  Identities=13%  Similarity=0.017  Sum_probs=46.7

Q ss_pred             EEEEecCCCCeEEEEEcC----------------CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644          192 SAEFHPIYCNLLAYSSSR----------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  255 (421)
                      .+++.+.. .+++.+..+                +.|..+|..+++..-..    +.   .+...--+.....++. +..
T Consensus       245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~----q~---~~~d~wd~d~~~~p~l-~d~  315 (599)
T 1w6s_A          245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY----QK---TPHDEWDYAGVNVMML-SEQ  315 (599)
T ss_dssp             CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE----ES---STTCSSCCCCCCCCEE-EEE
T ss_pred             ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe----ec---CCCccccccCCCccEE-Eec
Confidence            45667776 777777655                37899999988753211    11   0000000000111121 222


Q ss_pred             c-CCC---CEEEEecC-CeEEEEECCCCCcceeEEe
Q 014644          256 A-NDG---QHLLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       256 s-~~~---~~l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      . .+|   +.++.++. |.++++|.++ ++++....
T Consensus       316 ~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~  350 (599)
T 1w6s_A          316 KDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK  350 (599)
T ss_dssp             ECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             cccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence            2 467   45666655 9999999987 87766554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.30  E-value=1.3  Score=46.01  Aligned_cols=40  Identities=10%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             cccccccEEEEEEEEcCC----CCeEEEEeC-CCcEEEeecCCce
Q 014644           29 SLEIEEKINRVRWCAAPN----GSMFILSTN-DKTIKLWKVRDQK   68 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~----~~~l~t~s~-d~~v~lwd~~~~~   68 (421)
                      .......|.|+++.+.++    +.+++.|.. |++|+|+++.+-+
T Consensus       549 ~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          549 HTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             EEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             ccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            344567899999954333    478999996 9999999998755

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.29  E-value=0.2  Score=44.36  Aligned_cols=117  Identities=8%  Similarity=0.007  Sum_probs=59.4

Q ss_pred             ceEEEeecCCCC-EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecC---CCCeEEEEEc-------
Q 014644          140 NINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS-------  208 (421)
Q Consensus       140 ~v~~l~~~~~~~-~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~-------  208 (421)
                      ....++|.|+|+ ++++-..+.|++++..  +.....+...+............++|+|+   +..+.++-+.       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            467999999999 6666577899998854  32221111000111122345689999995   4144443332       


Q ss_pred             CCeEEEEECCcccc-cccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          209 RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       209 d~~v~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      ...|..+++..... ......++..   .+.    ..........++|.|||.+.++.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~---~p~----~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQ---MPK----LSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEEC---SSC----CBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEE---CCC----CCCCcccCccEEECCCCcEEEEE
Confidence            23566666543210 0000011111   000    00001234679999999766664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.87  E-value=0.86  Score=40.20  Aligned_cols=137  Identities=10%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             ccceeEEeeccc-ceeeeeeeecCCC-CcceEEEeecCCCCEEEEEc----C------------CcEEEEeCCCCceeee
Q 014644          113 NMATKIANVGNS-VHARCQKVYPHAH-DFNINSISNNSDCETFVSAD----D------------LRINLWNLEISDQCFN  174 (421)
Q Consensus       113 ~~~~~~~~~~~~-~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~----d------------~~i~lwd~~~~~~~~~  174 (421)
                      ...+.+++.+.. .....+..+ .+. -...+++.+.++|.+.++..    |            ..=.+|.+.. ++ .+
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~-~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~-~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTI-RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-ND-VR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE-CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TC-CE
T ss_pred             CCeEEEEEEECCCCEEEEEecc-ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-Ce-EE
Confidence            446777776653 223445555 332 34678999999999888752    1            1223444332 22 11


Q ss_pred             eeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcc-cccccchhhhccccccCCCcccccccccceeE
Q 014644          175 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISD  252 (421)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  252 (421)
                      .+       ...-.....++|+||+ +.|+.+. ..+.|..|++... ....  .+.+..              ......
T Consensus       215 ~~-------~~~l~~pNGia~spDg-~~lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~--------------~g~PDG  270 (355)
T 3sre_A          215 VV-------AEGFDFANGINISPDG-KYVYIAELLAHKIHVYEKHANWTLTP--LRVLSF--------------DTLVDN  270 (355)
T ss_dssp             EE-------EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEC--------------SSEEEE
T ss_pred             Ee-------ecCCcccCcceECCCC-CEEEEEeCCCCeEEEEEECCCCcEec--CEEEeC--------------CCCCce
Confidence            11       1122456899999999 6666554 6789999998642 2111  112211              356788


Q ss_pred             EEEcC-CCCEEEEec-C-CeEEEEECC
Q 014644          253 IKFAN-DGQHLLSRD-Y-MNLKLWDIR  276 (421)
Q Consensus       253 ~~~s~-~~~~l~~~~-~-~~i~i~d~~  276 (421)
                      +++.+ +|.+.+++. . +.|..|+..
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECCC
Confidence            99999 598877653 3 455555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.81  E-value=1.4  Score=42.30  Aligned_cols=156  Identities=5%  Similarity=-0.105  Sum_probs=96.0

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      ..+..++|.+.+..|..+  .++.|+.++++ +.....++       .........+++.+.+.++.++-...+.|.+.+
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~-------~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~  108 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVV-------EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK  108 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEE-------eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence            457899999876666554  78899999987 33222222       112245678999987624445445668899999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec--C-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      +......    .+...             .-.....+++.|...+|....  . +.|...++.  +.....+...-..  
T Consensus       109 ~dG~~~~----~l~~~-------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l~~~~~~--  167 (628)
T 4a0p_A          109 LDGQHRQ----VLVWK-------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTLVPNVGR--  167 (628)
T ss_dssp             TTSTTCE----EEECS-------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSCSS--
T ss_pred             cCCCcEE----EEEeC-------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEEECCCCC--
Confidence            8653211    11111             123568999999655555443  2 677777775  4333333211111  


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCC
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~  336 (421)
                                   ...++++++++.|+.+. ..+.|...|+...
T Consensus       168 -------------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          168 -------------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             -------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -------------cceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence                         16899999877776654 5678999998754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.72  E-value=0.65  Score=37.63  Aligned_cols=113  Identities=9%  Similarity=-0.156  Sum_probs=62.0

Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      ..+..++|+|++ .+.+ . .+|.+.-.+..+...     ..+.. ....    +=..--..-.++.|.|+|.+.++ ++
T Consensus        41 ~~~~~laf~P~G-~LYa-V-~~G~Ly~~~~~t~~~-----~~W~~-s~t~----IG~~Gw~~F~a~~fD~~G~LYav-~d  106 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYG-V-LNDKIYKGTPPTHDN-----DNWMG-RAKK----IGNGGWNQFQFLFFDPNGYLYAV-SK  106 (236)
T ss_dssp             TTCSEEEECTTS-CEEE-E-ETTEEEEESCCCSTT-----CCHHH-HCEE----EECSCGGGCSEEEECTTSCEEEE-ET
T ss_pred             ccceeEEECCCc-cEEE-E-eCCeEEEECCCCCCc-----ccccc-cccE----ecccccccceEEEECCCCCEEEe-CC
Confidence            367799999988 5444 4 788777666544221     11211 0000    00000011378999999998888 66


Q ss_pred             CeEEEEECCCCCcce----eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEE
Q 014644          268 MNLKLWDIRMDSTPV----ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR  329 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~  329 (421)
                      |.|+-++-.+.+...    ...-+.....             ++..+.+.|+|.+-+..  |+.++
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~-------------~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWS-------------GFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGG-------------GEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCC-------------ceEEEEECCCceEEEEe--CCcEE
Confidence            888777753211110    0111111111             23688999999866555  78765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.70  E-value=0.6  Score=40.22  Aligned_cols=133  Identities=11%  Similarity=0.027  Sum_probs=74.0

Q ss_pred             cCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC--------------
Q 014644          147 NSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------  209 (421)
Q Consensus       147 ~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--------------  209 (421)
                      +.++..|..+   +++.|...+.+ +....++.        .    -.+--+++++ ..|+.+...              
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~--------~----~~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~   87 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS--------N----DTAMYINADK-NYVYYVRNNNQKITSQTFFSYDR   87 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEE--------E----EEEEEEEECS-SEEEEEEECC------CCSSCCS
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc--------C----CceeeEEEcC-CEEEEEECCCCcccccceeccCC
Confidence            3466666664   35666666665 33333321        1    1234568898 777776643              


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec---C--CeEEEEECCCCCcceeE
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y--MNLKLWDIRMDSTPVAT  284 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~--~~i~i~d~~~~~~~~~~  284 (421)
                      ..|+..++......    . +..               .  .+..|++++++|+-..   .  ..|+..++.  +.....
T Consensus        88 ~~Iy~i~~dg~~~~----~-l~~---------------~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~  143 (302)
T 3s25_A           88 NSLCRIKRNGHGST----V-LDP---------------D--PCIYASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKK  143 (302)
T ss_dssp             EEEEEEETTSCCCE----E-EEC---------------S--CEEEEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEE
T ss_pred             CeEEEEeCCCCcce----E-eec---------------C--CccEEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEE
Confidence            35666666654311    1 111               1  2336788888888654   3  445555554  444444


Q ss_pred             EeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCC
Q 014644          285 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG  336 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~  336 (421)
                      +..+..                   .+++|+++.|+-.+. ...|+.-++..+
T Consensus       144 lt~~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          144 IKNHYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EESSCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             EeCCCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence            443321                   235678888886665 567888887655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.62  E-value=0.71  Score=37.40  Aligned_cols=111  Identities=13%  Similarity=-0.032  Sum_probs=62.6

Q ss_pred             ceEEEeecCCCCEEEEEcCCcEEEEeCCCCce-----eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEE
Q 014644          140 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  214 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~i  214 (421)
                      .+..++|+|+|.+.+. .+|.+.-.+..+...     .-+.+.    . .+-. .-.++.|.|+| .+.++  .||.|.-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG----~-~Gw~-~F~a~~fD~~G-~LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIG----N-GGWN-QFQFLFFDPNG-YLYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEE----C-SCGG-GCSEEEECTTS-CEEEE--ETTEEEE
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEec----c-cccc-cceEEEECCCC-CEEEe--CCCEEEE
Confidence            6779999999997777 777665555432110     001100    0 0111 13788999998 65555  6798887


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEE
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  271 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~  271 (421)
                      ++..+...     ..+-. . ..   .+-..--..+..|.+.|+|.+.+.. ++.++
T Consensus       112 ~~pP~~~~-----~~Wl~-~-a~---~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          112 ASPPQSDT-----DNWIA-R-AT---EVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             ESCCCSTT-----CCHHH-H-SE---EEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             eCCCcCCC-----Cceec-c-cc---EeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            77543221     11111 0 00   0000011467999999999988888 76644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.45  E-value=1.4  Score=39.74  Aligned_cols=239  Identities=8%  Similarity=0.062  Sum_probs=132.1

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      +|..+.+|.=+ ..++.|+|+++.+  ++.....+++|.-..|..++.--           +     .+...+.-|+++.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~--klks~~~~e~VvfWkWis~~~l~-----------l-----VT~taVyHWsi~~  134 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMTDDVTFWKWISLNTVA-----------L-----VTDNAVYHWSMEG  134 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTE--EEEEEECSSCCCEEEEEETTEEE-----------E-----ECSSEEEEEESSS
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhh--hhcceecCCCceEEEecCCCeEE-----------E-----EcCCeeEEecccC
Confidence            56777777665 6799999999876  33333344544433333221110           1     1233567788865


Q ss_pred             cceeeeeeeecCCCC----cceEEEeecCCCCEEEE-E---c----CCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          124 SVHARCQKVYPHAHD----FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       124 ~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s-~---~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                        ...+++.+ ..|.    ..|..-..+++.++++. |   .    .|.+.+|.++.  +.-+.+       ++|.+.-.
T Consensus       135 --~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~i-------eGhaa~F~  202 (494)
T 1bpo_A          135 --ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPI-------EGHAASFA  202 (494)
T ss_dssp             --SCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEEE-------CCSEEEEE
T ss_pred             --CCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--cccchh-------eeeeeeeE
Confidence              23677777 4543    35677778899998875 3   2    46789999882  222322       66654433


Q ss_pred             EEEEec--CCCCeEEEEEcC---CeEEEEECCccccccc-c-hhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          192 SAEFHP--IYCNLLAYSSSR---GFVRLVDMRQSALCDH-S-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       192 ~~~~~p--~~~~~l~s~~~d---~~v~iwd~~~~~~~~~-~-~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      .+...-  ...++++.+...   +.++|.++........ . .+..+. ..++      ....+-.-++..++.-..+..
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fpp------e~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCT------TSTTCCEEEEEEETTTTEEEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee-eCCc------ccccCceeEEEecccCCEEEE
Confidence            333221  111344445443   7889998854310000 0 011111 0011      111334557778876666665


Q ss_pred             ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      -+. |.|++||+.+ +.++..-+.....+               +-.+-.....-++.....|.|.--.++..
T Consensus       276 iTK~G~i~lyDleT-gt~i~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          276 ITKYGYIHLYDLET-GTCIYMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EETTSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EecCceEEEEeccc-ceeeeeecccCCce---------------EEecccCCCCcEEEEccCceEEEEEEccc
Confidence            555 9999999998 88776665544432               23333344344555557787776666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.28  E-value=1.4  Score=38.79  Aligned_cols=26  Identities=23%  Similarity=0.495  Sum_probs=18.7

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEee
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWK   63 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd   63 (421)
                      .-..++|  .+++++++ +..++.|++++
T Consensus        32 ~P~~ia~--~pdG~l~V-~e~~g~I~~i~   57 (352)
T 2ism_A           32 VPWALAF--LPDGGMLI-AERPGRIRLFR   57 (352)
T ss_dssp             CEEEEEE--CTTSCEEE-EETTTEEEEEE
T ss_pred             CceEEEE--cCCCeEEE-EeCCCeEEEEE
Confidence            3468888  68887554 45668888888

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.72  E-value=2.1  Score=37.80  Aligned_cols=30  Identities=10%  Similarity=0.091  Sum_probs=20.5

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK   68 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~   68 (421)
                      .-..++|  .++++ |+.+..++.|++++ .+++
T Consensus        30 ~P~~ia~--~pdG~-l~V~e~~g~I~~~d-~~G~   59 (354)
T 3a9g_A           30 VPWSIAP--LGGGR-YLVTERPGRLVLIS-PSGK   59 (354)
T ss_dssp             CEEEEEE--EETTE-EEEEETTTEEEEEC-SSCE
T ss_pred             CCeEEEE--cCCCe-EEEEeCCCEEEEEe-CCCc
Confidence            4578889  56776 45556669999987 3444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.87  E-value=3.2  Score=36.58  Aligned_cols=28  Identities=7%  Similarity=0.357  Sum_probs=20.3

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeec
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKV   64 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~   64 (421)
                      .-..|+|  .++++.|+.+...|.|++++.
T Consensus        19 ~P~~i~~--~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           19 HPWALAF--LPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SEEEEEE--CSTTCCEEEEETTTEEEEEET
T ss_pred             CcEEEEE--cCCCCEEEEEeCCceEEEEeC
Confidence            3478888  688883445566788888874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.81  E-value=4.9  Score=38.54  Aligned_cols=104  Identities=9%  Similarity=-0.037  Sum_probs=54.6

Q ss_pred             eEEEEcCCCCEEE-EeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC---CC
Q 014644          308 FECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SS  382 (421)
Q Consensus       308 ~~~~~sp~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw---~~  382 (421)
                      ..+++.+.+..|+ +-+..+.|.+.++... .....+...-...+.+++.|.+       ..|........ +|+   ..
T Consensus       395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~-------G~ly~tD~g~~~~I~r~~~d  466 (619)
T 3s94_A          395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMV-------GYMYWTDWGEIPKIERAALD  466 (619)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTT-------TEEEEEECSSSCEEEEEETT
T ss_pred             CceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCC-------CcEEEecCCCCCEEEEEccC
Confidence            5788987555444 4456788999998754 3323333334455677777651       13333221112 343   22


Q ss_pred             CCcccccc-ccccCeEEEEEccCCCeEEEecC--CceEEE
Q 014644          383 SGHHELSY-NLSSKLLHLAWHPTTNLIACANG--NSLFFH  419 (421)
Q Consensus       383 ~~~~~~~~-~~~~~v~~~~~spd~~~la~~~~--~~~~i~  419 (421)
                      +....... ..-.....+++.+++..|..+..  +.|..+
T Consensus       467 G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~  506 (619)
T 3s94_A          467 GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM  506 (619)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence            22111111 12345678899988777776653  335443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.28  E-value=4.9  Score=36.90  Aligned_cols=60  Identities=13%  Similarity=0.034  Sum_probs=35.5

Q ss_pred             cceEEEeecCCCC--EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCC----ccCCCeeEEEEecC
Q 014644          139 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  198 (421)
Q Consensus       139 ~~v~~l~~~~~~~--~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~  198 (421)
                      .....|+|.|+|.  +|++-..|.|++++.........+.++......    .....+..|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3467899999996  666558899999975411111111221111111    12456889999996

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.27  E-value=3.8  Score=43.01  Aligned_cols=205  Identities=9%  Similarity=0.101  Sum_probs=106.9

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      +|..+.+|.=+ ..++.|+|+++.+  ++.....+++|.-..|..+..-           -+     .+...+.-|+++.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~--klks~~~~e~VvfWkWis~~~l-----------~l-----VT~~aVyHW~~~~  134 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMTDDVTFWKWISLNTV-----------AL-----VTDNAVYHWSMEG  134 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhh--hhcccccCCCceEEEecCCCee-----------EE-----EcCCeEEEeccCC
Confidence            45556565554 6788999988765  3333334444443333322111           11     1233467788864


Q ss_pred             cceeeeeeeecCCC----CcceEEEeecCCCCEEEE-E-------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          124 SVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       124 ~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s-~-------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                        ...+++.+ ..|    ...|..-..+++.++++. |       -.|.+.+|.++..  .-+       .+.||.+.-.
T Consensus       135 --~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ-------~iegha~~F~  202 (1630)
T 1xi4_A          135 --ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQ-------PIEGHAASFA  202 (1630)
T ss_pred             --CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cch-------hhhHhHhhhh
Confidence              23666666 555    345677777889998774 3       2478889988722  221       2256654433


Q ss_pred             EEEEe--cCCCCeEEEEEc---CCeEEEEECCccccccc-c-hhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          192 SAEFH--PIYCNLLAYSSS---RGFVRLVDMRQSALCDH-S-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       192 ~~~~~--p~~~~~l~s~~~---d~~v~iwd~~~~~~~~~-~-~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      .+...  +....+++.+..   .+.++|.++........ . .+..+. ..++      ....+-..++..++.-..+..
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~-~~~~------~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc-cCCc------ccccCcceEEEeccccCEEEE
Confidence            33332  111133333332   26888888854300000 0 011111 0000      011233456777776556655


Q ss_pred             ecC-CeEEEEECCCCCcceeEEee
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      -+. |.|++||+.+ +.++..-+.
T Consensus       276 itk~G~~~~~d~~t-~~~i~~~ri  298 (1630)
T 1xi4_A          276 ITKYGYIHLYDLET-GTCIYMNRI  298 (1630)
T ss_pred             EecCceEEEEeccc-chhhhhccc
Confidence            555 9999999997 776654443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.97  E-value=1  Score=38.74  Aligned_cols=137  Identities=7%  Similarity=-0.027  Sum_probs=73.3

Q ss_pred             eecCCCCEEEEEc---CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CCeEEEEECCcc
Q 014644          145 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS  220 (421)
Q Consensus       145 ~~~~~~~~l~s~~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~~v~iwd~~~~  220 (421)
                      .|+++++.|+-..   ++.-.||.+...+...+.+       ..+.  +  ..++|++ +.|+..+. ...|...++..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~l-------t~~~--~--~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI-------KNHY--L--FTCNTSD-RYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEE-------ESSC--C--CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEE-------eCCC--c--eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence            5677888888653   4444455443333323322       1121  1  3567888 66766554 567777777654


Q ss_pred             cccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC---CeEEEEECCCCCcceeEEeeccCccccccc
Q 014644          221 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      ...    .++..                ... ..+.|++.+|+-...   ..|..-++.  +.....+.. ..       
T Consensus       178 ~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~-~~-------  226 (302)
T 3s25_A          178 SEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTE-AN-------  226 (302)
T ss_dssp             EEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSC-SC-------
T ss_pred             CEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeC-CC-------
Confidence            321    22221                112 235699988876532   345555554  443443421 11       


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeC--CCeEEEEecCC
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGV  335 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~--dg~i~iwd~~~  335 (421)
                                 ...|+|++++|+-++.  .+.|..-++..
T Consensus       227 -----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          227 -----------IEHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             -----------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             -----------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence                       2347888888876543  35666666653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.21  E-value=6.5  Score=35.58  Aligned_cols=148  Identities=9%  Similarity=0.112  Sum_probs=95.8

Q ss_pred             CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccC
Q 014644          158 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  237 (421)
Q Consensus       158 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~  237 (421)
                      ...|.|-|+....+..+           ..-...+.-.+|.. +.|+.-. ..++.++|+.+....    +.+..     
T Consensus        47 ~~~vvIiDl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~kl----ks~~~-----  104 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM-----  104 (494)
T ss_dssp             CCEEEEEETTSTTSCEE-----------EECCCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEE----EEEEC-----
T ss_pred             CCeEEEEECCCCCccee-----------cccccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhh----cceec-----
Confidence            34677777773333221           11123456689987 7776654 789999999986543    22222     


Q ss_pred             CCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          238 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                               ...|.-=.|-. .+.|+--++..|+-|++.....+++.+..|....        +..   +..-..+++.+
T Consensus       105 ---------~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~--------~~Q---IInY~~d~~~k  163 (494)
T 1bpo_A          105 ---------TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--------GCQ---IINYRTDAKQK  163 (494)
T ss_dssp             ---------SSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT--------TCE---EEEEEECTTSS
T ss_pred             ---------CCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcc--------cce---EEEEEECCCCC
Confidence                     23455555654 3455555557899999976578899998887652        111   25677888999


Q ss_pred             EEEEee-------CCCeEEEEecCCCCCceeEEecCCCCc
Q 014644          318 HFATGS-------YSNLLRIFSHGVGSAGGITVEAGKNEN  350 (421)
Q Consensus       318 ~l~~~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~  350 (421)
                      |++..+       -.|.+.+|..+.  ...+.++||...-
T Consensus       164 W~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ieGhaa~F  201 (494)
T 1bpo_A          164 WLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASF  201 (494)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEESTT--CCEEEECCSEEEE
T ss_pred             eEEEEeecccCCcccceEEEeeccc--cccchheeeeeee
Confidence            876433       247889999884  5778888886544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.28  E-value=11  Score=39.62  Aligned_cols=127  Identities=11%  Similarity=0.138  Sum_probs=81.5

Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  271 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~  271 (421)
                      +.-.+|.. +.|+.-. ..++.|+|+.+....    +.+..              ...|.-=.|-.+ +.|+--++..|+
T Consensus        70 sAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~--------------~e~VvfWkWis~-~~l~lVT~~aVy  128 (1630)
T 1xi4_A           70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWISL-NTVALVTDNAVY  128 (1630)
T ss_pred             hhccCCCc-ceEEEec-CCeEEEeehHHhhhh----ccccc--------------CCCceEEEecCC-CeeEEEcCCeEE
Confidence            45578887 6666554 789999999886533    32222              234555566543 455544556899


Q ss_pred             EEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-------CCCeEEEEecCCCCCceeEEe
Q 014644          272 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       272 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-------~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      -|++.....|++.+..|....        +..   |.+-..+++.+|++..+       -.|.+.+|.++.  ...+.+.
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~--------~~Q---IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ~ie  195 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLA--------GCQ---IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIE  195 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcc--------cCe---eEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccchhhh
Confidence            999975567777777665542        111   24667788888876433       358899999884  4567777


Q ss_pred             cCCCCccc
Q 014644          345 AGKNENRK  352 (421)
Q Consensus       345 ~~~~~~~~  352 (421)
                      ||...-..
T Consensus       196 gha~~F~~  203 (1630)
T 1xi4_A          196 GHAASFAQ  203 (1630)
T ss_pred             HhHhhhhe
Confidence            77654433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.64  E-value=10  Score=32.06  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=15.5

Q ss_pred             CCCEEEEeeCC-----CeEEEEecCCC
Q 014644          315 DGLHFATGSYS-----NLLRIFSHGVG  336 (421)
Q Consensus       315 ~~~~l~~~s~d-----g~i~iwd~~~~  336 (421)
                      +++.++.|+.+     ..+.+||..+.
T Consensus       253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          253 RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            67777777765     35788888765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.13  E-value=7.5  Score=33.91  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCeEEEEECCccccc
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      ..+++++.+|.+...|+++|+..
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCCEE
T ss_pred             CEEEEEecCCEEEEEECCCCcEE
Confidence            57889999999999999999754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.86  E-value=32  Score=35.78  Aligned_cols=246  Identities=11%  Similarity=0.028  Sum_probs=115.2

Q ss_pred             EEEEEEEcCCCCeEEEEeCCCcEEEeecCCce------eEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      .++.+   -+..+|+.||..|.=.+|.+....      +..+....--+||.++.......       ..........+.
T Consensus       330 ssl~~---l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~-------~~~~~i~~~sG~  399 (1158)
T 3ei3_A          330 ECLTY---LDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLER-------QGQGQLVTCSGA  399 (1158)
T ss_dssp             SEEEE---CSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTS-------SSCCEEEEEECC
T ss_pred             cEEEE---ECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCC-------CCCCeEEEEECc
Confidence            34554   345689999998888888876432      23344444445555544322110       011122222222


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeec---CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN---SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      ...+.+++..-.-.......-.+ . ....++.+...   ....+|+.+ .+.+ .++.+. ++ .+..+..  ..+...
T Consensus       400 g~~gsL~~lr~Gi~~~~~~~~~l-~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~-~e-~veev~~--~gf~~~  472 (1158)
T 3ei3_A          400 FKEGSLRIIRNGIGIHEHASIDL-P-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLN-GE-EVEETEL--MGFVDD  472 (1158)
T ss_dssp             GGGCEEEEEEESBCEEEEEEECC-C-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEE-TT-EEEEECC--TTCCSS
T ss_pred             CCCCeEEEEecCCCEEEEEeecC-C-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEe-CC-ccccccc--ccccCC
Confidence            23344444433322211111123 2 33566666643   235688888 6655 566664 22 2222110  111111


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ...+.+-.+ ++  ..++=.... .|++.+.......    ..|..    +        ....|...+.+  +..++.++
T Consensus       473 ~~TL~~~~l-~~--~~ivQVt~~-~Irli~~~~~~~~----~~w~~----p--------~~~~I~~As~n--~~~vvva~  530 (1158)
T 3ei3_A          473 QQTFFCGNV-AH--QQLIQITSA-SVRLVSQEPKALV----SEWKE----P--------QAKNISVASCN--SSQVVVAV  530 (1158)
T ss_dssp             SCEEEEEEE-TT--TEEEEEESS-CEEEEESSSCCEE----EEECC----T--------TCCCCCEEEEC--SSEEEEEE
T ss_pred             CCcEEEEEc-CC--CeEEEEecC-EEEEEECCCCeEE----EEEEC----C--------CCCEEEEEEeC--CCEEEEEE
Confidence            111111111 22  233333333 3566665432211    22322    0        01245555554  34555554


Q ss_pred             CCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCC------CCEEEEeeC-CCeEEEEecCCC
Q 014644          267 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD------GLHFATGSY-SNLLRIFSHGVG  336 (421)
Q Consensus       267 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~------~~~l~~~s~-dg~i~iwd~~~~  336 (421)
                      .+.+..+.+.. ++.. ......-.          +   ++.++++.|.      +.+++.|.. |++|+|+++.+.
T Consensus       531 g~~l~~fel~~-~~L~-~~~~~~l~----------~---evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          531 GRALYYLQIHP-QELR-QISHTEME----------H---EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             TTEEEEEEEET-TEEE-EEEEEECS----------S---CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEEeeC-Ccee-eecccCCC----------C---ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            57788888764 4322 11111100          0   2367888763      478999996 999999999864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.25  E-value=22  Score=33.34  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=48.8

Q ss_pred             cceeEEEEcCCCCEEEEecC--CeEEEEECCCC-----Ccc-------eeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644          248 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMD-----STP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  313 (421)
Q Consensus       248 ~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  313 (421)
                      .....+.++|||++++.++.  .++.++|+++-     .+.       +......-                +....+|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl----------------GPlHt~Fd  386 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL----------------GPLHTTFD  386 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS----------------CEEEEEEC
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC----------------cccEEEEC
Confidence            34568999999999998754  89999998731     111       11111111                12688999


Q ss_pred             CCCCEEEEeeCCCeEEEEecCC
Q 014644          314 GDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       314 p~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      ++|....+---|..|.-|++..
T Consensus       387 ~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          387 GRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SSSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCceEeeeeecceEEEEeccH
Confidence            9994444555799999999875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.51  E-value=22  Score=31.05  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=23.7

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK   68 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~   68 (421)
                      .-..|+|  .|++.++++--..|.|++++..++.
T Consensus        33 ~P~~ia~--~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           33 SPWGLAP--LPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             SEEEEEE--CTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CceEEEE--cCCCcEEEEEecCCEEEEEECCCCc
Confidence            4568889  6888877766658999888765544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.91  E-value=47  Score=33.69  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      .+.+++..++. .++++-+.|+++|+|++.++++.
T Consensus       237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v  270 (950)
T 4gq2_M          237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV  270 (950)
T ss_dssp             CEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred             eEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence            46677777777 89999999999999999998754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=81.85  E-value=22  Score=29.92  Aligned_cols=22  Identities=14%  Similarity=0.373  Sum_probs=15.6

Q ss_pred             CCCEEEEeeCCC-----eEEEEecCCC
Q 014644          315 DGLHFATGSYSN-----LLRIFSHGVG  336 (421)
Q Consensus       315 ~~~~l~~~s~dg-----~i~iwd~~~~  336 (421)
                      ++++++.|+.++     .+.+||..+.
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCC
Confidence            677777777553     4888888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=81.25  E-value=2.7  Score=39.24  Aligned_cols=79  Identities=15%  Similarity=0.094  Sum_probs=51.2

Q ss_pred             ceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeee--eeecC---CCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE
Q 014644          140 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMK---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  212 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v  212 (421)
                      ....+.++|||++++.+  -+.++.++|+++-...+.  +++.+   ....+ -.-.....+|.++| +...+--.|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence            45678889999999986  789999999873111100  00000   00111 12345778999998 666666689999


Q ss_pred             EEEECCcc
Q 014644          213 RLVDMRQS  220 (421)
Q Consensus       213 ~iwd~~~~  220 (421)
                      .-|++...
T Consensus       402 vkWni~~a  409 (638)
T 3sbq_A          402 VKWNMEEA  409 (638)
T ss_dssp             EEEEHHHH
T ss_pred             EEEeccHH
Confidence            99998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 37/310 (11%), Positives = 98/310 (31%), Gaps = 25/310 (8%)

Query: 23  EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 82
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 83  SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 142
            EN   +        +P S  +   + ++ +   K    G            +     I 
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 143 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 202
                            ++   + + + + +++   + S    + + +T+    P     
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 203 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 262
           +A  S    VR+ D     L +                   T    S+  + F  DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 263 LSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 322
           +S             ++   +  K       ++  + + D +      + + +  +  +G
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS---VATTQNDEYILSG 326

Query: 323 SYSNLLRIFS 332
           S    +  + 
Sbjct: 327 SKDRGVLFWD 336

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 38/324 (11%), Positives = 89/324 (27%), Gaps = 49/324 (15%)

Query: 33  EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI----------------KEMD 76
              + RV +   P  S+ + ++ D TIK+W       ++                  ++ 
Sbjct: 17  RSPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 77  HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH- 135
                     L   + F          H             I +       +  +V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 136 ------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 188
                  H   +  +  N D     S  +D  + +W +   +    + + +         
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC---- 190

Query: 189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 248
           +  + E      +    S ++   +      S   D + ++      +            
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDN 248

Query: 249 SISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 307
            +  + F + G+ +LS  D   L++WD + +   + T   HE              +   
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHE------------HFVTS- 294

Query: 308 FECSVSGDGLHFATGSYSNLLRIF 331
                     +  TGS    ++++
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 35/310 (11%), Positives = 84/310 (27%), Gaps = 34/310 (10%)

Query: 33  EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 92
             KI  + W    +  + + ++ D  + +W            +     ++          
Sbjct: 55  LAKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 93  FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET 152
                +     +           ++         + C+ +  +    +    +       
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 153 FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT---------EVITSAEFHPIYCNLL 203
                          +S        +  S   D +             +   H    N +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263
            +  +           +   D + R+    A+          II  I+ + F+  G+ LL
Sbjct: 233 CFFPNGNAF------ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 264 S-RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 322
           +  D  N  +WD    +        H+            + +       V+ DG+  ATG
Sbjct: 287 AGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMAVATG 330

Query: 323 SYSNLLRIFS 332
           S+ + L+I++
Sbjct: 331 SWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 31/310 (10%), Positives = 67/310 (21%), Gaps = 24/310 (7%)

Query: 27  LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 86
           + +L   E +  V           + +     +K+W +     K            +   
Sbjct: 45  INTLNHGEVVCAVTIS--NPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 87  LLA---EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS 143
                 +   +      S    + L                              F+  S
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 144 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 203
             N +  +        +        S    +    K         V +            
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221

Query: 204 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 263
            ++S    +      +       +  +     +   K       + +  +KFA  G+  +
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 322
           S      L  W        +   K                S+     C +S D  +  TG
Sbjct: 282 STGKDNLLNAWRTP-YGASIFQSKES-------------SSVLS---CDISVDDKYIVTG 324

Query: 323 SYSNLLRIFS 332
           S      ++ 
Sbjct: 325 SGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 43/327 (13%)

Query: 37  NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 96
           + V  C    G+  +  ++D T+K+W     K  +          SS+       +   +
Sbjct: 17  DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 97  HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF--- 153
                +                      +H +            +  I            
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 154 ---VSADDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSR 209
              V               D    + D +  + +  L                +   S  
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196

Query: 210 GFVRLVDMRQ-------------------------SALCDHSARILRDAAESHGSKSFFT 244
             +R+ D+                           S   D + +I               
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 256

Query: 245 EIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 304
               S       N    + S D   +KLWD++     +      E          +   +
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNLVTLE-------SGGSGGVV 308

Query: 305 FDKFECSVSGDGLHFATGSYSNLLRIF 331
           +       S   L  A GS +      
Sbjct: 309 WR---IRASNTKLVCAVGSRNGTEETK 332

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 32/305 (10%), Positives = 81/305 (26%), Gaps = 19/305 (6%)

Query: 27  LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 86
           L+ +    + ++  +C   +    +    D TIK+W     + K+I    H   V     
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY 63

Query: 87  LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 146
                +        S +     +                    +         + +    
Sbjct: 64  -----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 147 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 206
             D  +       R+ + +    +          S   D T  + +         L  + 
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 207 SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 265
                ++  D    S   D++ R+        G+     E    +      ++ + +   
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDI---ECGACLRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 266 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 325
               +K+WD+     P    +           + ++  +F      +  D     + S+ 
Sbjct: 236 YDGKIKVWDLVAALDP----RAPAGTLCLRTLVEHSGRVF-----RLQFDEFQIVSSSHD 286

Query: 326 NLLRI 330
           + + I
Sbjct: 287 DTILI 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.78
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.64
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.72
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.17
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.16
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.23
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.95
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.14
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.7
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.58
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.27
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.3
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.69
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.23

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-39  Score=288.76  Aligned_cols=288  Identities=14%  Similarity=0.126  Sum_probs=232.6

Q ss_pred             ccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      ...++.++|.+.|++++|  ++++++|++|+ ||.|+|||+.+......                               
T Consensus        42 ~~~~~~~~H~~~V~~v~f--s~~g~~latg~-dg~V~iWd~~~~~~~~~-------------------------------   87 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP-------------------------------   87 (337)
T ss_dssp             EEEEEEECCSSCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC-------------------------------
T ss_pred             ceEEEECCCCCcEEEEEE--CCCCCEEEEEE-CCEEEEEEccCCcccce-------------------------------
Confidence            355677899999999999  79999999987 89999999987541100                               


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeecCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPS  181 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~  181 (421)
                                              ...... .+|.+.|.+++|+|++++|+++ .|++|++||+..... ...       
T Consensus        88 ------------------------~~~~~~-~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~-------  135 (337)
T d1gxra_          88 ------------------------VSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-------  135 (337)
T ss_dssp             ------------------------SEEEEC-SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-------
T ss_pred             ------------------------eEEeee-cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc-------
Confidence                                    111112 5899999999999999999999 999999999873332 222       


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .+..|...+.+++|+|++ .++++++.|+.|++||+.+++..    .....             |...+.+++|++++.+
T Consensus       136 ~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~----~~~~~-------------~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         136 ELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQG-------------HTDGASCIDISNDGTK  197 (337)
T ss_dssp             EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccc----ccccc-------------cccccccccccccccc
Confidence            236788899999999999 99999999999999999987543    22223             4778999999999999


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      +++++. +.+++||+++ ++.+..+. +...+               .+++|+|++++|++|+.||.|++||+++.  ..
T Consensus       198 ~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~i---------------~~l~~~~~~~~l~~~~~d~~i~i~d~~~~--~~  258 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKP--DK  258 (337)
T ss_dssp             EEEEETTSEEEEEETTT-TEEEEEEE-CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSS--CE
T ss_pred             ccccccccccccccccc-ceeecccc-cccce---------------EEEEEcccccccceecccccccccccccc--cc
Confidence            998875 9999999986 77766654 33332               78999999999999999999999999866  34


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCC-CCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      .....|...+..+.|+|+       +.+|++|+.|+. ++|+. .+.......|...|++++|+|++++||+|+ ++.|+
T Consensus       259 ~~~~~~~~~i~~v~~s~~-------g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~  331 (337)
T d1gxra_         259 YQLHLHESCVLSLKFAYC-------GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             EEECCCSSCEEEEEECTT-------SSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             ccccccccccceEEECCC-------CCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            567889999999999998       348999999999 99933 333344567889999999999999999988 45699


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      ||+.
T Consensus       332 vWdl  335 (337)
T d1gxra_         332 VYEV  335 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-37  Score=273.13  Aligned_cols=293  Identities=13%  Similarity=0.192  Sum_probs=232.4

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||+++|++|+|  +|++++||||+.||+|+|||+.+++                                         
T Consensus        14 ~GH~~~I~~l~~--sp~~~~l~s~s~Dg~i~iWd~~~~~-----------------------------------------   50 (317)
T d1vyhc1          14 SGHRSPVTRVIF--HPVFSVMVSASEDATIKVWDYETGD-----------------------------------------   50 (317)
T ss_dssp             ECCSSCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCC-----------------------------------------
T ss_pred             cCCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCC-----------------------------------------
Confidence            479999999999  7899999999999999999998753                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                         +++.+ .+|...|.+++|+|++.+++++ .++.+.+|+... .....       .+..|..
T Consensus        51 -------------------~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~  102 (317)
T d1vyhc1          51 -------------------FERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIR-------TMHGHDH  102 (317)
T ss_dssp             -------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEE-------CCCCCSS
T ss_pred             -------------------EEEEE-eCCCCcEEEEeeecccccccccccccccccccccc-ccccc-------ccccccc
Confidence                               23345 7899999999999999999998 999999999883 33332       2367889


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .+.++.|+|++ ..+++++.|+.+++||++++...    ..+..             |...+.+++|+|++.+|++++. 
T Consensus       103 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1         103 NVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFTG-------------HREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             CEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             cceeeeccCCC-ceEEeeccCcceeEeecccceee----eEEcc-------------CCCcceeeecccCCCEEEEEeCC
Confidence            99999999999 99999999999999999987543    33333             4778999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCC-----cceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNND-----SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT  342 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~  342 (421)
                      +.|++|++.+ ++....+..+...+..+.......     .........+...+.++++++.|+.|++||+.++ .....
T Consensus       165 ~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~  242 (317)
T d1vyhc1         165 QTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMT  242 (317)
T ss_dssp             SCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             CeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEE
Confidence            9999999986 777777777666542111000000     0000012233335678999999999999999987 67788


Q ss_pred             EecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecC-CceEE
Q 014644          343 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF  418 (421)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~i  418 (421)
                      +.+|..++..++++|+       +.+|++|+.|+. ++|  ..++.+....+|...|++++|+|++++||+|+. +.|+|
T Consensus       243 ~~~~~~~v~~~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSG-------GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             EECCSSCEEEEEECSS-------SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EeCCCCCEEEEEECCC-------CCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999999999999998       348999999999 999  345666677789999999999999999999985 56999


Q ss_pred             Ee
Q 014644          419 HY  420 (421)
Q Consensus       419 ~~  420 (421)
                      |+
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-37  Score=281.26  Aligned_cols=323  Identities=15%  Similarity=0.194  Sum_probs=226.3

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCC-----CCcccccccccccceeeccCC
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF-----PFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      ...+.++|++.|++|+|  +|+|++||+|+ |++|+|||+.+++..........     ..............|.+++++
T Consensus        54 ~l~~~~~H~~~V~~l~f--s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  130 (388)
T d1erja_          54 ELHKSLDHTSVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS  130 (388)
T ss_dssp             EEEEEEECSSCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred             eeEeeCCCCCcEEEEEE--CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC
Confidence            34456789999999999  79999999986 99999999998873322111100     001111222334567888888


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeec
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  178 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~  178 (421)
                      +++.+++.++.  ++.+++|+....   +.+..+ .+|...|.++++++++..++++ .++.+++||.. ........  
T Consensus       131 ~~~~~l~s~~~--dg~v~i~~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~--  201 (388)
T d1erja_         131 PDGKFLATGAE--DRLIRIWDIENR---KIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL--  201 (388)
T ss_dssp             TTSSEEEEEET--TSCEEEEETTTT---EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--
T ss_pred             CCCCcceeccc--cccccccccccc---cccccc-ccccccccccccccccccccccccceeeeeeecc-cccccccc--
Confidence            88888888876  668999999887   777777 8999999999999999999998 99999999998 44444332  


Q ss_pred             CCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC
Q 014644          179 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  258 (421)
Q Consensus       179 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~  258 (421)
                            .+.....++.++|....+|++++.|+.|++||++++......    ..      ......+|...|.+++|+|+
T Consensus       202 ------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~------~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         202 ------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----DS------ENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             ------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----C------------CCCSSCEEEEEECTT
T ss_pred             ------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee----cc------ccccccCCCCCEEEEEECCC
Confidence                  233445566666643389999999999999999987643211    11      11123456889999999999


Q ss_pred             CCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC
Q 014644          259 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS  337 (421)
Q Consensus       259 ~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~  337 (421)
                      +++|++++. +.|++||++. .....................+...   +.+++|+|++++|++|+.||.|++||+.++ 
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-  340 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSG-  340 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC----------------CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTC-
T ss_pred             CCEEEEEECCCcEEEEeccC-Cccccccccccccceeeecccccce---EEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence            999999876 9999999975 3322211111110000000111112   279999999999999999999999999987 


Q ss_pred             CceeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCce
Q 014644          338 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSL  416 (421)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~  416 (421)
                      .....+++|.+.|..+++...                                        ++|+|++++||+|+ ++.|
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~----------------------------------------~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANG----------------------------------------SSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSS----------------------------------------CTTCTTCEEEEEEETTSEE
T ss_pred             cEEEEEeCCCCCEEEEEEecC----------------------------------------cccCCCCCEEEEEeCCCEE
Confidence            677888999888887776543                                        24788999999888 5568


Q ss_pred             EEEe
Q 014644          417 FFHY  420 (421)
Q Consensus       417 ~i~~  420 (421)
                      +||+
T Consensus       381 ~iW~  384 (388)
T d1erja_         381 RIWK  384 (388)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=276.04  Aligned_cols=283  Identities=10%  Similarity=0.069  Sum_probs=216.0

Q ss_pred             cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccc
Q 014644           33 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  112 (421)
Q Consensus        33 ~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  112 (421)
                      .++|+|++|  +|++++||+|+.|+.|+|||.++++.                                           
T Consensus         7 ~~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------   41 (371)
T d1k8kc_           7 VEPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------   41 (371)
T ss_dssp             SSCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEE-------------------------------------------
T ss_pred             CCCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------
Confidence            478999999  89999999999999999999876542                                           


Q ss_pred             ccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          113 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                                     .++..+ .+|.+.|++++|+|++++|+++ .|++|++||++ ........     .+.+|...|.
T Consensus        42 ---------------~~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-~~~~~~~~-----~~~~~~~~v~   99 (371)
T d1k8kc_          42 ---------------VQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAAR   99 (371)
T ss_dssp             ---------------EEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCEE
T ss_pred             ---------------EEEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-cccccccc-----cccccccccc
Confidence                           233445 7999999999999999999998 99999999998 34333332     2367889999


Q ss_pred             EEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeE
Q 014644          192 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  270 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i  270 (421)
                      +++|+|++ +.|++++.|++|++|++............             ...|...|.+++|+|++++|++++. +.|
T Consensus       100 ~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_         100 CVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI-------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE-------------CTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccc-ccceeecccCcceeeeeeccccccccccc-------------ccccccccccccccccccceeccccCcEE
Confidence            99999999 99999999999999998765422111111             2334778999999999999999865 999


Q ss_pred             EEEECCCCCcc------------------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          271 KLWDIRMDSTP------------------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       271 ~i~d~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      ++||+.. ...                  +.....|..               .+.+++|+|++++|++++.|+.|++||
T Consensus       166 ~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         166 RIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCG---------------WVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             EEEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSS---------------CEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             EEEeecc-CccccccccccccccccceeeeeeccCccC---------------cEEEEEeecccccccccccCCcceEEe
Confidence            9999864 221                  111122222               237899999999999999999999999


Q ss_pred             cCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCcccC--CCCC-c------c-----------------
Q 014644          333 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSG-H------H-----------------  386 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw--~~~~-~------~-----------------  386 (421)
                      +.++ .....+..|..++.+++|+++       +.+|++|.++...+|  .... .      +                 
T Consensus       230 ~~~~-~~~~~~~~~~~~v~s~~fs~d-------~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
T d1k8kc_         230 ADKK-MAVATLASETLPLLAVTFITE-------SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF  301 (371)
T ss_dssp             GGGT-TEEEEEECSSCCEEEEEEEET-------TEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred             eecc-cceeeeecccccceeeeecCC-------CCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeE
Confidence            9987 677888999999999999988       337777764433555  1100 0      0                 


Q ss_pred             -----------------ccccccccCeEEEEEccCCC----eEEEec-CCceEEEe
Q 014644          387 -----------------ELSYNLSSKLLHLAWHPTTN----LIACAN-GNSLFFHY  420 (421)
Q Consensus       387 -----------------~~~~~~~~~v~~~~~spd~~----~la~~~-~~~~~i~~  420 (421)
                                       .....|...|++++++|.+.    .|++++ ++.++||+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence                             00013777899999988753    478887 66799997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-35  Score=258.45  Aligned_cols=276  Identities=9%  Similarity=0.081  Sum_probs=212.3

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccc
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  111 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  111 (421)
                      +.+.+..+++  +|+++.|+.++ ++.|.+||+++..                                           
T Consensus        16 ~r~~~~~~a~--~~~g~~l~~~~-~~~v~i~~~~~~~-------------------------------------------   49 (311)
T d1nr0a1          16 ARGTAVVLGN--TPAGDKIQYCN-GTSVYTVPVGSLT-------------------------------------------   49 (311)
T ss_dssp             CTTCCCCCEE--CTTSSEEEEEE-TTEEEEEETTCSS-------------------------------------------
T ss_pred             CCCCeEEEEE--cCCCCEEEEEe-CCEEEEEECCCCc-------------------------------------------
Confidence            3445567788  78999998875 6679999987743                                           


Q ss_pred             cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCe
Q 014644          112 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  190 (421)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  190 (421)
                                       ..+.+ .+|.+.|++++|+|+|++|++| .|++|++||+.........      .+..|..+|
T Consensus        50 -----------------~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~v  105 (311)
T d1nr0a1          50 -----------------DTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT------TIPVFSGPV  105 (311)
T ss_dssp             -----------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE------EEECSSSCE
T ss_pred             -----------------eeEEE-cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc------ccccccCcc
Confidence                             22334 7899999999999999999999 9999999999854443322      236789999


Q ss_pred             eEEEEecCCCCeEEEEEc--CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE-EEEecC
Q 014644          191 TSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDY  267 (421)
Q Consensus       191 ~~~~~~p~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~  267 (421)
                      .+++|+|++ ++|++++.  +..+++|++.+++..    ..+..             |...|.+++|+|++++ |++|+.
T Consensus       106 ~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~----~~l~~-------------h~~~v~~v~~~~~~~~~l~sgs~  167 (311)
T d1nr0a1         106 KDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSN----GNLTG-------------QARAMNSVDFKPSRPFRIISGSD  167 (311)
T ss_dssp             EEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBC----BCCCC-------------CSSCEEEEEECSSSSCEEEEEET
T ss_pred             ccccccccc-ccccccccccccccccccccccccc----ccccc-------------cccccccccccccceeeeccccc
Confidence            999999999 88888875  466999999876543    33333             4788999999999986 667765


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE----
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT----  342 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~----  342 (421)
                       +.|++||+++ ++....+..|...+               .+++|+|++++|++++.||.|++||+.++. ....    
T Consensus       168 d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~  230 (311)
T d1nr0a1         168 DNTVAIFEGPP-FKFKSTFGEHTKFV---------------HSVRYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDD  230 (311)
T ss_dssp             TSCEEEEETTT-BEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCT
T ss_pred             ccccccccccc-cccccccccccccc---------------cccccCcccccccccccccccccccccccc-cccccccc
Confidence             9999999986 78888888877755               799999999999999999999999998763 2222    


Q ss_pred             ---EecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCcccccccc---ccCeEEEEEccCCCeEEEec-
Q 014644          343 ---VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNL---SSKLLHLAWHPTTNLIACAN-  412 (421)
Q Consensus       343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~---~~~v~~~~~spd~~~la~~~-  412 (421)
                         ..+|.+.|.+++|+|+       ..+|++|+.|+. ++|+  .+..+.....+   ...+.++.|  +++.|++++ 
T Consensus       231 ~~~~~~h~~~V~~~~~s~~-------~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~  301 (311)
T d1nr0a1         231 SLKNVAHSGSVFGLTWSPD-------GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA  301 (311)
T ss_dssp             TSSSCSSSSCEEEEEECTT-------SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred             ccccccccccccccccCCC-------CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEEC
Confidence               3468899999999988       348999999999 9993  33333333222   233444554  455677666 


Q ss_pred             CCceEEEeC
Q 014644          413 GNSLFFHYA  421 (421)
Q Consensus       413 ~~~~~i~~~  421 (421)
                      ++.|++|+.
T Consensus       302 dG~i~~wd~  310 (311)
T d1nr0a1         302 NGFINFVNP  310 (311)
T ss_dssp             TCCEEEEET
T ss_pred             CCEEEEEeC
Confidence            777999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-34  Score=256.02  Aligned_cols=253  Identities=10%  Similarity=0.105  Sum_probs=197.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee-EEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+|.+.|++++|  +|++++||+|+.||+|+|||+.+++. .......+.++            +.++.+++++.++..+
T Consensus        55 ~~H~~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          55 TEHSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP------------VKDISWDSESKRIAAV  120 (311)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC------------EEEEEECTTSCEEEEE
T ss_pred             cCCCCCEEEEEE--eCCCCeEeccccCceEeeeeeeccccccccccccccCc------------cccccccccccccccc
Confidence            479999999999  79999999999999999999988762 22222234444            4455555666666666


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCE-EEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                      +.+....+++|+.++.   ++.+.+ .+|.+.|++++|+|++++ |++| .|+.|++||++ ..+.....       .+|
T Consensus       121 ~~~~~~~~~v~~~~~~---~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~~-------~~~  188 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTG---TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTF-------GEH  188 (311)
T ss_dssp             ECCSSCSEEEEETTTC---CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEE-------CCC
T ss_pred             cccccccccccccccc---cccccc-cccccccccccccccceeeeccccccccccccccc-cccccccc-------ccc
Confidence            6555567889998877   677777 899999999999999885 7778 99999999999 55555544       678


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      ...|.++.|+|++ ++|++++.|+.|++||++++...    ..+..      ......+|...|.+++|+|++++|++|+
T Consensus       189 ~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~------~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         189 TKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccCccc-ccccccccccccccccccccccc----ccccc------cccccccccccccccccCCCCCEEEEEe
Confidence            9999999999999 99999999999999999886543    22211      1122355788999999999999999987


Q ss_pred             C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          267 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      . +.|+|||+++ +++++.+..+.....              ..+++.+++..|++++.||.|++||.+
T Consensus       258 ~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         258 ADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            5 9999999987 888888877654321              233445566689999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-34  Score=256.60  Aligned_cols=280  Identities=15%  Similarity=0.142  Sum_probs=225.5

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      ||+++|++++|  +|++.+||+|+.||+|+|||+.+++                                          
T Consensus        53 GH~~~I~~l~~--s~~~~~l~sgs~Dg~v~iWd~~~~~------------------------------------------   88 (340)
T d1tbga_          53 GHLAKIYAMHW--GTDSRLLVSASQDGKLIIWDSYTTN------------------------------------------   88 (340)
T ss_dssp             CCSSCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTE------------------------------------------
T ss_pred             CCCCCEEEEEE--CCCCCEEEEEECCCceeeeecccce------------------------------------------
Confidence            79999999999  7999999999999999999998764                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                        ++..+ ..|...|.+++|+|++++++++ .|+.+++|+...........    ..+.+|...
T Consensus        89 ------------------~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~----~~~~~~~~~  145 (340)
T d1tbga_          89 ------------------KVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS----RELAGHTGY  145 (340)
T ss_dssp             ------------------EEEEE-ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE----EEECCCSSC
T ss_pred             ------------------eEEEE-ecccccEEeeEeeccceeeeeecccceeecccccccccccccc----eeccccccc
Confidence                              22334 6788999999999999999999 99999999987433222221    123567666


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      .......++  ..+.....|.....++.......    ...             ..+...+....+.+.+.+++++.. +
T Consensus       146 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         146 LSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT----TTF-------------TGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             EEEEEEEET--TEEEEEETTTEEEEEETTTTEEE----EEE-------------ECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ccccccccc--ccccccccccccccccccccccc----ccc-------------cccceeEeeeccccccceeEEeecCc
Confidence            666655554  57888889999999987764422    111             112567889999999999999865 9


Q ss_pred             eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeE--EecC
Q 014644          269 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT--VEAG  346 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~  346 (421)
                      .|++||+++ ++++..+.+|...+               .+++|+|++++|++|+.||.|++|++.... ....  ...+
T Consensus       207 ~v~i~d~~~-~~~~~~~~~h~~~i---------------~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~~~~~  269 (340)
T d1tbga_         207 SAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI  269 (340)
T ss_dssp             EEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTC
T ss_pred             eEEEEECCC-CcEEEEEeCCCCCe---------------EEEEECCCCCEEEEEeCCCeEEEEeecccc-cccccccccc
Confidence            999999986 88888898888765               799999999999999999999999998763 3333  3456


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ...+..+.|+++       +.+|++|+.|+. ++|  ..++.+....+|...|++++|+|++++||+|+ ++.|+||+
T Consensus       270 ~~~i~~~~~s~~-------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         270 ICGITSVSFSKS-------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEEECSS-------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCceEEEEECCC-------CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            677899999988       348999999999 999  45566677778999999999999999999988 56799996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=253.38  Aligned_cols=278  Identities=11%  Similarity=0.079  Sum_probs=207.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||.+.|++++|  +|++++|++|+.||+|++||+++++.                                        
T Consensus         9 ~GH~~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~~~~----------------------------------------   46 (299)
T d1nr0a2           9 YGHNKAITALSS--SADGKTLFSADAEGHINSWDISTGIS----------------------------------------   46 (299)
T ss_dssp             CCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE----------------------------------------
T ss_pred             CCCCCCcEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcE----------------------------------------
Confidence            589999999999  79999999999999999999987642                                        


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                          ++.+..+|...|++++|+|++++++++.|+.+++|+..... .....    .....+...
T Consensus        47 --------------------~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~-~~~~~----~~~~~~~~~  101 (299)
T d1nr0a2          47 --------------------NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG-VDSSK----AVANKLSSQ  101 (299)
T ss_dssp             --------------------EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS-SCTTS----CCEEECSSC
T ss_pred             --------------------EEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcc-ccccc----ccccccccc
Confidence                                12222578999999999999987777799999999987322 11100    112456778


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-C
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  268 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~  268 (421)
                      +.+++|+|++ ..++++ .++.+++|+.....      ... .              ...+.+++|+|+++++++++. +
T Consensus       102 ~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~~~------~~~-~--------------~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2         102 PLGLAVSADG-DIAVAA-CYKHIAIYSHGKLT------EVP-I--------------SYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             EEEEEECTTS-SCEEEE-ESSEEEEEETTEEE------EEE-C--------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             cccccccccc-cccccc-cccccccccccccc------ccc-c--------------ccccccccccccccccccccccc
Confidence            9999999998 666554 56789999965422      111 1              235788999999999999876 9


Q ss_pred             eEEEEECCCCCccee-EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc--eeEEec
Q 014644          269 NLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEA  345 (421)
Q Consensus       269 ~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~  345 (421)
                      .|++||+++ ++... ....|...+               .+++|+|++++|++++.|+.|++||+.++...  ...+.+
T Consensus       159 ~i~~~d~~~-~~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  222 (299)
T d1nr0a2         159 KVHVYKLSG-ASVSEVKTIVHPAEI---------------TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  222 (299)
T ss_dssp             EEEEEEEET-TEEEEEEEEECSSCE---------------EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             ccccccccc-ccccccccccccccc---------------cccccccccccccccccccccccccccccccccccccccc
Confidence            999999975 44332 334455543               79999999999999999999999999876332  355678


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--C--cccccccc-ccCeEEEEEccCCCeEEEec-CCceEE
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--G--HHELSYNL-SSKLLHLAWHPTTNLIACAN-GNSLFF  418 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~--~~~~~~~~-~~~v~~~~~spd~~~la~~~-~~~~~i  418 (421)
                      |..++.+++|+|+       +.+|++|+.|+. ++|+..  .  .......+ ...|..+.| +++++|++++ ++.|++
T Consensus       223 h~~~v~~l~~s~~-------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         223 HTAKVACVSWSPD-------NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CSSCEEEEEECTT-------SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             ccccccccccccc-------ccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence            9999999999998       348999999999 999322  1  12222233 445666655 5567777777 667999


Q ss_pred             EeC
Q 014644          419 HYA  421 (421)
Q Consensus       419 ~~~  421 (421)
                      |+.
T Consensus       295 Wdl  297 (299)
T d1nr0a2         295 WNV  297 (299)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-32  Score=241.69  Aligned_cols=241  Identities=17%  Similarity=0.245  Sum_probs=193.1

Q ss_pred             ccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeec-CCCCCcccccccccccceeeccCCCCceeee
Q 014644           28 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  106 (421)
Q Consensus        28 ~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  106 (421)
                      ...+|++.|++++|  +|++++|++|+.|++|++||+.....+..... .+..            .+.+..++++...+.
T Consensus        92 ~~~~h~~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~  157 (337)
T d1gxra_          92 DCLNRDNYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP------------ACYALAISPDSKVCF  157 (337)
T ss_dssp             ECSCTTSBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS------------CEEEEEECTTSSEEE
T ss_pred             eecCCCCcEEEEEE--cCCCCEEEEeecccccccccccccccccccccccccc------------ccccccccccccccc
Confidence            34578999999999  79999999999999999999886553322222 2333            344455555666666


Q ss_pred             ecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          107 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      .++.  +..+.+|+..+.   ++.... .+|...|.+++|++++..++++ .|+.|++||++ .++.+..+        .
T Consensus       158 s~~~--d~~i~~~~~~~~---~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~~--------~  222 (337)
T d1gxra_         158 SCCS--DGNIAVWDLHNQ---TLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH--------D  222 (337)
T ss_dssp             EEET--TSCEEEEETTTT---EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------E
T ss_pred             cccc--cccccccccccc---cccccc-cccccccccccccccccccccccccccccccccc-cceeeccc--------c
Confidence            5544  557899998887   777777 8999999999999999999999 99999999998 55555543        4


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      |...|.+++|+|++ ..|++++.|+.+++||++.+...     ..             ..|...|.+++|+|++++|+++
T Consensus       223 ~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-----~~-------------~~~~~~i~~v~~s~~g~~l~s~  283 (337)
T d1gxra_         223 FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-----QL-------------HLHESCVLSLKFAYCGKWFVST  283 (337)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-----EE-------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccceEEEEEcccc-cccceeccccccccccccccccc-----cc-------------cccccccceEEECCCCCEEEEE
Confidence            77899999999999 99999999999999999886532     11             2347789999999999999998


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      +. +.|++||+.+ ++.+..+. |...+               .+++|+|++++|++|+.||.|+|||+
T Consensus       284 s~Dg~i~iwd~~~-~~~~~~~~-~~~~v---------------~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         284 GKDNLLNAWRTPY-GASIFQSK-ESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ETTSEEEEEETTT-CCEEEEEE-CSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eCCCeEEEEECCC-CCEEEEcc-CCCCE---------------EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            76 9999999986 77776654 44433               79999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-32  Score=247.09  Aligned_cols=239  Identities=10%  Similarity=0.043  Sum_probs=189.2

Q ss_pred             CCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEE
Q 014644          137 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  215 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iw  215 (421)
                      ..++|+|++|+|++++||+| .|+.|++||++ .++.....     .+.+|..+|.+++|+|++ ++|++++.|++|++|
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~-~~~~~~~~-----~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVH-----ELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVW   78 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEE-----EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECC-CCCEEEEE-----EecCCCCCEEEEEECCCC-CEEEEEECCCeEEEE
Confidence            34789999999999999999 99999999997 34322221     347899999999999999 999999999999999


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE----eeccC
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF----KIHEH  290 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~----~~~~~  290 (421)
                      |+..+...    ..+.           +..|...|.+++|+|++++|++++. +.+++|++.. .......    ..|..
T Consensus        79 d~~~~~~~----~~~~-----------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~-~~~~~~~~~~~~~~~~  142 (371)
T d1k8kc_          79 TLKGRTWK----PTLV-----------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWWVCKHIKKPIRS  142 (371)
T ss_dssp             EEETTEEE----EEEE-----------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET-TTTEEEEEEECTTCCS
T ss_pred             eecccccc----cccc-----------cccccccccccccccccccceeecccCcceeeeeec-cccccccccccccccc
Confidence            99865422    1111           1234678999999999999999876 9999999875 3332222    22333


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCC-----------------CceeEEecCCCCccce
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-----------------AGGITVEAGKNENRKP  353 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~  353 (421)
                      .               +.+++|+|++++|++|+.||.|++|++....                 .......+|...+..+
T Consensus       143 ~---------------v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  207 (371)
T d1k8kc_         143 T---------------VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  207 (371)
T ss_dssp             C---------------EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             c---------------cccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence            2               2789999999999999999999999986532                 2344557888899999


Q ss_pred             eeecCCcccccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          354 ILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       354 ~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      +|+|+  +     ..|++++.|+. ++|  ..+..+.....|..+|.+++|+||+++||+|.++.+++|.
T Consensus       208 ~~s~~--g-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~  270 (371)
T d1k8kc_         208 CFSAN--G-----SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT  270 (371)
T ss_dssp             EECSS--S-----SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEE
T ss_pred             Eeecc--c-----ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEE
Confidence            99998  3     38999999999 999  3445555667788899999999999999999988777763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-31  Score=237.07  Aligned_cols=291  Identities=11%  Similarity=0.124  Sum_probs=211.3

Q ss_pred             ccccccE-EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h~~~V-~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .||.+.| +|++|    ++++||||+.||+|+|||+.+++                                        
T Consensus         9 ~GH~~~vitc~~~----~~~~l~tgs~Dg~i~vWd~~~~~----------------------------------------   44 (355)
T d1nexb2           9 RGHMTSVITCLQF----EDNYVITGADDKMIRVYDSINKK----------------------------------------   44 (355)
T ss_dssp             ECCSSSCEEEEEE----ETTEEEEEETTTEEEEEETTTTE----------------------------------------
T ss_pred             CCcCCCcEEEEEE----CCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence            3788775 66665    46899999999999999998753                                        


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                          +++.+ .+|.+.|++++|+|++ +|++| .|++|++|++. ........     ....+.
T Consensus        45 --------------------~~~~l-~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~-~~~~~~~~-----~~~~~~   96 (355)
T d1nexb2          45 --------------------FLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-KGCCTHVF-----EGHNST   96 (355)
T ss_dssp             --------------------EEEEE-ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT-TTEEEEEE-----CCCSSC
T ss_pred             --------------------EEEEE-ECCCCCEEEEEEcCCC-EEEEEeccccccccccc-cccccccc-----cccccc
Confidence                                33445 7899999999999864 78888 99999999998 44444332     113334


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhcc--ccccCC----CcccccccccceeEEEEcCCCCE
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD--AAESHG----SKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~--h~~~~~----~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      .......+.+++ ..+++++.|+.|++||++..............  ....+.    .......|...+  ..+.+++++
T Consensus        97 ~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~  173 (355)
T d1nexb2          97 VRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNI  173 (355)
T ss_dssp             EEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTE
T ss_pred             cccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccce
Confidence            445667788888 89999999999999999876532111000000  000000    000111222223  345567888


Q ss_pred             EEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCce
Q 014644          262 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG  340 (421)
Q Consensus       262 l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~  340 (421)
                      ++++.. +.|++||+++ ++.+....++....               .++.|+|++.++++++.|+.|++||++++ ...
T Consensus       174 ~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~  236 (355)
T d1nexb2         174 VVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRI---------------YSTIYDHERKRCISASMDTTIRIWDLENG-ELM  236 (355)
T ss_dssp             EEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCEEEEETTTC-CEE
T ss_pred             eeeecccceeeeeeccc-ccceeeeecccccc---------------ccccccccceeeecccccceEEeeecccc-ccc
Confidence            888865 9999999986 77777776665543               68899999999999999999999999987 778


Q ss_pred             eEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEE-EEccCCCeEEEecCCceEE
Q 014644          341 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSLFF  418 (421)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~-~~spd~~~la~~~~~~~~i  418 (421)
                      ..+.+|...+..+.+++.         .|++|+.|+. ++|+..........|...+..+ +++|++.+|++|+++.|++
T Consensus       237 ~~~~~h~~~v~~~~~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~v  307 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSDK---------FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNI  307 (355)
T ss_dssp             EEECCCSSCCCEEEECSS---------EEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEE
T ss_pred             cccccccccccccccccc---------eeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEE
Confidence            889999999999998765         8999999999 9996655555555565555554 6788999999999999999


Q ss_pred             EeC
Q 014644          419 HYA  421 (421)
Q Consensus       419 ~~~  421 (421)
                      |+.
T Consensus       308 wd~  310 (355)
T d1nexb2         308 YNL  310 (355)
T ss_dssp             EET
T ss_pred             EEC
Confidence            984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-31  Score=231.44  Aligned_cols=243  Identities=15%  Similarity=0.152  Sum_probs=190.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ .||.+.|++++|+|++++|++| .|++|++||++ .++..+.+      ...|...|.+++|+|++ . ++++
T Consensus         3 ~~~~~~-~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~-~~~~~~~~------~~~h~~~v~~v~~~~~g-~-~~~~   72 (299)
T d1nr0a2           3 SIDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDIS-TGISNRVF------PDVHATMITGIKTTSKG-D-LFTV   72 (299)
T ss_dssp             EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEECS------SCSCSSCEEEEEECTTS-C-EEEE
T ss_pred             ccceEc-CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEE------cCCCCCcEEEEEeeccc-e-eecc
Confidence            556777 9999999999999999999999 99999999998 45555443      25689999999999997 5 5667


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|+.+++|+........ ....             ...+...+..++|+|++++++++.++.+++|+..   +......
T Consensus        73 ~~d~~v~~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~---~~~~~~~  135 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDS-SKAV-------------ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPI  135 (299)
T ss_dssp             ETTTEEEEECSSSSSSCT-TSCC-------------EEECSSCEEEEEECTTSSCEEEEESSEEEEEETT---EEEEEEC
T ss_pred             cceeeEEEeccCCccccc-cccc-------------cccccccccccccccccccccccccccccccccc---ccccccc
Confidence            789999999987643210 0011             1233567889999999999998888899999954   2222222


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      .+..                 .+++|+|++++|++|+.||.|++||+++..........|..++..++++|+       .
T Consensus       136 ~~~~-----------------~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-------~  191 (299)
T d1nr0a2         136 SYNS-----------------SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-------G  191 (299)
T ss_dssp             SSCE-----------------EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT-------S
T ss_pred             cccc-----------------ccccccccccccccccccccccccccccccccccccccccccccccccccc-------c
Confidence            2221                 589999999999999999999999998774445566789999999999987       3


Q ss_pred             ceeeeecccCc-ccCCC--CC---ccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          367 SNLTRGLYRQA-HENSS--SG---HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw~~--~~---~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ..|++++.++. ++|+.  +.   ......+|...|++++|+|++++||+|+ ++.+++|+.
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEEC
Confidence            38999999999 99932  22   2233456788999999999999999998 566999973

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-30  Score=229.74  Aligned_cols=228  Identities=11%  Similarity=0.072  Sum_probs=170.2

Q ss_pred             ccc-cccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeec
Q 014644           30 LEI-EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  108 (421)
Q Consensus        30 ~~h-~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g  108 (421)
                      .+| ...|++++|.|..++.+|++|+.||+|+|||+..++......                                  
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~----------------------------------  104 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE----------------------------------  104 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE----------------------------------
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee----------------------------------
Confidence            355 568999999655578899999999999999987654110000                                  


Q ss_pred             ccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE---cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          109 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                                        ......+ ..|.++|.+++|++++++|+++   .++.+++|+.+ .++.+..+       .+
T Consensus       105 ------------------~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~  157 (325)
T d1pgua1         105 ------------------VNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEV-------SG  157 (325)
T ss_dssp             ------------------EEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEEC-------CS
T ss_pred             ------------------ccccccc-ccccCcEEEEEECCCCCccceeeccccceEEEEeec-ccccceee-------ee
Confidence                              0112233 5788999999999999998874   47889999998 45555543       78


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCC-CCEEEE
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLS  264 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~  264 (421)
                      |...|.+++|+|+++.++++++.|+.+++||+...+..    .....          ...|...|.+++|+|+ +.++++
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~----~~~~~----------~~~~~~~v~~v~~~pd~~~~l~s  223 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS----ASDRT----------HHKQGSFVRDVEFSPDSGEFVIT  223 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE----EEECS----------SSCTTCCEEEEEECSTTCCEEEE
T ss_pred             cccccccccccccccceEEEeecccccccccccccccc----eeccc----------ccCCCCccEEeeeccccceeccc
Confidence            99999999999998556888999999999998876533    11111          1334778999999997 678888


Q ss_pred             ecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEE
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV  343 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  343 (421)
                      ++. +.|++||+++ ++.+..+.+|...+...           +++++| |+|++|++++.|+.|+|||++++ .....+
T Consensus       224 ~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~-----------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~  289 (325)
T d1pgua1         224 VGSDRKISCFDGKS-GEFLKYIEDDQEPVQGG-----------IFALSW-LDSQKFATVGADATIRVWDVTTS-KCVQKW  289 (325)
T ss_dssp             EETTCCEEEEETTT-CCEEEECCBTTBCCCSC-----------EEEEEE-SSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             cccccceeeeeecc-ccccccccccccccccc-----------eeeeec-cCCCEEEEEeCCCeEEEEECCCC-CEEEEE
Confidence            765 9999999986 88888888887654211           033343 68899999999999999999987 444444


Q ss_pred             ecC
Q 014644          344 EAG  346 (421)
Q Consensus       344 ~~~  346 (421)
                      ..|
T Consensus       290 ~~~  292 (325)
T d1pgua1         290 TLD  292 (325)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-30  Score=237.79  Aligned_cols=267  Identities=15%  Similarity=0.175  Sum_probs=187.8

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|++++|  +|++++|++|+.||+|++||...++..... ..+...            +.+..+.+....+..++
T Consensus       118 ~~~~~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~------------v~~~~~~~~~~~~~~~~  182 (388)
T d1erja_         118 PSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQD------------IYSLDYFPSGDKLVSGS  182 (388)
T ss_dssp             -CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSC------------EEEEEECTTSSEEEEEE
T ss_pred             cCCCCCEEEEEE--CCCCCcceeccccccccccccccccccccc-cccccc------------ccccccccccccccccc
Confidence            467888999999  789999999999999999999988743332 223443            44444445555555544


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  .+.+++|+....   .+.... ..+...+....+.+++++|+++ .|+.|++|+.. .......+........+|..
T Consensus       183 ~--~~~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         183 G--DRTVRIWDLRTG---QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKD  255 (388)
T ss_dssp             T--TSEEEEEETTTT---EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSS
T ss_pred             c--ceeeeeeecccc---cccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecc-cCccceeeccccccccCCCC
Confidence            3  567899998876   555555 4555555444455689999998 99999999998 45445444333344567899


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                      .|.+++|+|++ .+|++++.|+.|++||++.+.....    ... ............|...|.+++|+|++++|++|+. 
T Consensus       256 ~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d  329 (388)
T d1erja_         256 SVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD  329 (388)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred             CEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccc----ccc-ccccceeeecccccceEEEEEECCCCCEEEEEeCC
Confidence            99999999999 9999999999999999987653311    111 0111112223556789999999999999999876 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      |.|++||+++ ++++..+.+|...+..+.         .....+|+|++++|++|+.||+|+||+++
T Consensus       330 g~i~vwd~~~-~~~~~~l~~H~~~V~~~~---------~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         330 RGVLFWDKKS-GNPLLMLQGHRNSVISVA---------VANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SEEEEEETTT-CCEEEEEECCSSCEEEEE---------ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEECCC-CcEEEEEeCCCCCEEEEE---------EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999997 899999999987652110         00122467899999999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.2e-30  Score=235.53  Aligned_cols=299  Identities=10%  Similarity=0.094  Sum_probs=187.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCcee-----EEeeecCCCCCcccccccccccceeeccCC-CCce
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFA  103 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~  103 (421)
                      -+|...|.++++  +  +++++|+|.|++|+|||..+...     .......+...+..+      ......... ....
T Consensus        11 ~~H~~~I~~v~~--~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~   80 (393)
T d1sq9a_          11 KAHDADIFSVSA--C--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV------DVLQAIERDAFELC   80 (393)
T ss_dssp             SCSSSCEEEEEE--C--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEE------EEEEEEETTTEEEE
T ss_pred             CcccCccEEEEE--e--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEe------eeEeeeccCCCCCc
Confidence            489999999998  3  36999999999999999765431     111111111110000      001111111 1223


Q ss_pred             eeeecccccccceeEEeecccceeee-----eeee-cCCCCcceEEEeecCC-----CCEEEEE-cCCcEEEEeCCCCce
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARC-----QKVY-PHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQ  171 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~h~~~v~~l~~~~~-----~~~l~s~-~d~~i~lwd~~~~~~  171 (421)
                      .+..++.  ++.+++|+.........     ...+ ...+...+..++|.++     +.+++++ .|+++++|++.....
T Consensus        81 ~~~s~~~--dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          81 LVATTSF--SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEET--TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEEEeC--CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            3334443  56788887654321111     1111 1234556778888765     4677887 999999999853211


Q ss_pred             eee----------eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcc
Q 014644          172 CFN----------IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  241 (421)
Q Consensus       172 ~~~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  241 (421)
                      ...          .+.........+...+.+++|+|++  +|++|+.|++|++||+.+++..    ..+..       ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~-------~~  225 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES-------QH  225 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-------CC
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-------cc
Confidence            100          0000112234556778999999986  8899999999999999987643    11111       11


Q ss_pred             cccccccceeEEEEcCCCCEEEEecC-C---eEEEEECCCCCcceeEEeeccCccccccccc-CCCcceeeeEEEEcCCC
Q 014644          242 FFTEIIASISDIKFANDGQHLLSRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-NNDSIFDKFECSVSGDG  316 (421)
Q Consensus       242 ~~~~~~~~v~~~~~s~~~~~l~~~~~-~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~  316 (421)
                      .+.+|..+|.+++|+|||++|++|++ +   .|++||+++ ++.+..+.............. +.+.   |++++|+|++
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~---V~~l~fspd~  301 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSG  301 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSC---EEEEEECSSS
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCc---eeeeccCCCC
Confidence            23556899999999999999999854 3   599999987 777776653222111111111 1122   3899999999


Q ss_pred             CEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccc----eeeecC
Q 014644          317 LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK----PILQAA  358 (421)
Q Consensus       317 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~  358 (421)
                      ++|++|+.|++|++||++++ .+..++.+|.+.|..    ++|.++
T Consensus       302 ~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             CeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCC
Confidence            99999999999999999998 788999999988864    556655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-29  Score=222.59  Aligned_cols=307  Identities=13%  Similarity=0.142  Sum_probs=210.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .||++.|.+ ++  +++|++||||+.||+|+|||+.+++..... ..|...|.++++.            ++  .+..++
T Consensus        13 ~GH~~~V~s-~~--~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~------------~~--~l~s~s   74 (342)
T d2ovrb2          13 KGHDDHVIT-CL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR------------DN--IIISGS   74 (342)
T ss_dssp             ECSTTSCEE-EE--EEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE------------TT--EEEEEE
T ss_pred             CCcCCceEE-EE--EECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeC------------CC--ccccce
Confidence            378888754 24  345889999999999999999988743322 2345555544443            22  444444


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                      .  ++.+++|+....   ...... ..+...+......  ...++.+ .|+.+.+|+..+ .+....+       ..+..
T Consensus        75 ~--D~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~-~~~~~~~-------~~~~~  138 (342)
T d2ovrb2          75 T--DRTLKVWNAETG---ECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLHVL-------MGHVA  138 (342)
T ss_dssp             T--TSCEEEEETTTT---EEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEEEE-------ECCSS
T ss_pred             e--cccccccccccc---cceecc-cccceeEeeeecc--cccccccccceeEEEeeccc-ccceeee-------ecccc
Confidence            4  567889988766   444444 4555556555443  4566667 999999999984 4433332       11222


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                        ......+.. ..+++++.|+.|++||++.....    ..+..             |..  ....+++++.++++++. 
T Consensus       139 --~~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~~~--~~~~~~~~~~~l~s~~~d  196 (342)
T d2ovrb2         139 --AVRCVQYDG-RRVVSGAYDFMVKVWDPETETCL----HTLQG-------------HTN--RVYSLQFDGIHVVSGSLD  196 (342)
T ss_dssp             --CEEEEEECS-SCEEEEETTSCEEEEEGGGTEEE----EEECC-------------CSS--CEEEEEECSSEEEEEETT
T ss_pred             --cceeecccc-ceeeeecCCCeEEEeecccceee----EEEcC-------------ccc--ccccccCCCCEEEEEeCC
Confidence              233344555 78899999999999999876533    33333             233  34445567889998865 


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC-
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-  346 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-  346 (421)
                      +.|++||++. ++++..+.+|...+               .++++  ++++|++++.||.|++||+... .....+..+ 
T Consensus       197 g~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~  257 (342)
T d2ovrb2         197 TSIRVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGPN  257 (342)
T ss_dssp             SCEEEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECSTT
T ss_pred             CeEEEeeccc-ceeeeEecccccce---------------eEEec--CCCEEEEEcCCCEEEEEecccc-cccccccccc
Confidence            9999999986 88888888887653               45555  5679999999999999999887 445555544 


Q ss_pred             --CCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccccc-----cccccCeEEEEEccCCCeEEEecCCc-
Q 014644          347 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS-  415 (421)
Q Consensus       347 --~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~~~-----~~~~~~v~~~~~spd~~~la~~~~~~-  415 (421)
                        ...+..+.+.+.         ++++|+.||. ++|+  .++.+...     .+|...|++++|+|++.+||+|+.++ 
T Consensus       258 ~~~~~~~~~~~~~~---------~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         258 KHQSAVTCLQFNKN---------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             SCSSCEEEEEECSS---------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             eeeeceeecccCCC---------eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence              344444555444         8999999999 9993  34443332     35677899999999999999998654 


Q ss_pred             ----eEEEe
Q 014644          416 ----LFFHY  420 (421)
Q Consensus       416 ----~~i~~  420 (421)
                          |++|+
T Consensus       329 ~~~~l~~~D  337 (342)
T d2ovrb2         329 EETKLLVLD  337 (342)
T ss_dssp             SCCEEEEEE
T ss_pred             CeeEEEEEe
Confidence                78886

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=223.25  Aligned_cols=248  Identities=15%  Similarity=0.167  Sum_probs=206.1

Q ss_pred             eeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          130 QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       130 ~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      ...+ +||.+.|++++|+|++++|++| .|++|+|||+. .+++...+       .+|...|.+++|+|++ .+++++..
T Consensus        10 ~~~L-~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~-~~~~~~~~-------~~h~~~V~~~~~~~~~-~~~~~~~~   79 (317)
T d1vyhc1          10 KYAL-SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTL-------KGHTDSVQDISFDHSG-KLLASCSA   79 (317)
T ss_dssp             SCEE-ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-TCCCCEEE-------CCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             cEEE-cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCEEEEE-------eCCCCcEEEEeeeccc-cccccccc
Confidence            3456 8999999999999999999999 99999999998 55566554       7899999999999999 99999999


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEee
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      ++.+.+|+.......    ..+             ..|...+..+.|+|++..+++++. +.+++||+++ ++.+..+.+
T Consensus        80 ~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~  141 (317)
T d1vyhc1          80 DMTIKLWDFQGFECI----RTM-------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTG  141 (317)
T ss_dssp             TSCCCEEETTSSCEE----ECC-------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEEC
T ss_pred             ccccccccccccccc----ccc-------------ccccccceeeeccCCCceEEeeccCcceeEeeccc-ceeeeEEcc
Confidence            999999998875432    222             234678999999999999998866 9999999987 788888888


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccc-----
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR-----  362 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  362 (421)
                      |...+               .+++|+|++++|++++.|+.|++|++.++ .....+.+|...+..+.+.+.....     
T Consensus       142 ~~~~~---------------~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         142 HREWV---------------RMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             CSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             CCCcc---------------eeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEEecCCCCceEEEEeeccccceeecc
Confidence            87654               78999999999999999999999999987 6677888999999888887763211     


Q ss_pred             --------ccccceeeeecccCc-ccC--CCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          363 --------RSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       363 --------~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                              ......+++++.|+. ++|  ..+..+....+|...|.+++|+|++++|++|+ ++.|++|+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence                    011246888999999 999  44455666778999999999999999999988 566999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-30  Score=223.36  Aligned_cols=265  Identities=10%  Similarity=0.030  Sum_probs=195.8

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|.++|++++|  ++    |+||+.||+|++||+.++.                                          
T Consensus        11 gH~~~I~~l~~--s~----l~sgs~Dg~v~~Wd~~~~~------------------------------------------   42 (287)
T d1pgua2          11 GHNKGITALTV--NP----LISGSYDGRIMEWSSSSMH------------------------------------------   42 (287)
T ss_dssp             CCSSCEEEEET--TT----TEEEETTSCEEETTTTEEE------------------------------------------
T ss_pred             CCCCceEEEEE--Cc----EEEEeCCCeEEEEECCCCC------------------------------------------
Confidence            78999999999  54    8999999999999986532                                          


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                              .+|...|.++++++++. ++++ .|+++++|++. ..+              ....
T Consensus        43 ------------------------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~-~~~--------------~~~~   82 (287)
T d1pgua2          43 ------------------------QDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGIT-KHE--------------FGSQ   82 (287)
T ss_dssp             ------------------------CCCCSCEEEEECCSTTC-CEEEETTTEEEETTEE-EEE--------------CSSC
T ss_pred             ------------------------CCCCCCEEEEEecCCCe-EEEEeecccccccccc-ccc--------------cccc
Confidence                                    57888999999997664 5666 99999999986 211              2244


Q ss_pred             eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-
Q 014644          190 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-  267 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-  267 (421)
                      +..+.+++++ ..++ .+.++.+.+|+..++...    ..+..              ..  ...++++++..++++. + 
T Consensus        83 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----~~~~~--------------~~--~~~~~~~~~~~~~v~~~~~  140 (287)
T d1pgua2          83 PKVASANNDG-FTAV-LTNDDDLLILQSFTGDII----KSVRL--------------NS--PGSAVSLSQNYVAVGLEEG  140 (287)
T ss_dssp             EEEEEECSSS-EEEE-EETTSEEEEEETTTCCEE----EEEEC--------------SS--CEEEEEECSSEEEEEETTT
T ss_pred             eeeeeeccCC-ceEE-Eeecccceeeeccceeee----eeccc--------------cc--eeeeeeccCcceeeecccc
Confidence            6788888887 5555 456777889998876543    22222              12  3345677788887664 4 


Q ss_pred             CeEEEEECCCCCcceeEEe-eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          268 MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      +.+++|++.. .+....+. .+...               +.+++|+|++++|++|+.||.|++||+.++......+.+|
T Consensus       141 ~~v~~~~~~~-~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         141 NTIQVFKLSD-LEVSFDLKTPLRAK---------------PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             SCEEEEETTE-EEEEEECSSCCSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             ceeeeeeccc-cceeeeeeeccCCc---------------eeEEEeccCccccccccccccccceeeccccccccccccc
Confidence            6899999864 33333222 22222               2789999999999999999999999999875555667899


Q ss_pred             CCCccceeeecCCccc---ccccceeeeecccCc-ccCCC---CCccccccccccCeEEEEEccCCCeEEEecCCceEEE
Q 014644          347 KNENRKPILQAAPRAR---RSSLSNLTRGLYRQA-HENSS---SGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH  419 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~---~~~~~~l~~g~~d~~-~iw~~---~~~~~~~~~~~~~v~~~~~spd~~~la~~~~~~~~i~  419 (421)
                      ..++.+++|+|.....   .....+|++|+.|+. ++|+.   .+......+|...|++++|+|++.++.++.++.+++|
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW  284 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW  284 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEE
Confidence            9999999998863210   112458999999999 99943   3445556689999999999999876655567889999


Q ss_pred             eC
Q 014644          420 YA  421 (421)
Q Consensus       420 ~~  421 (421)
                      +.
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-28  Score=211.51  Aligned_cols=267  Identities=14%  Similarity=0.226  Sum_probs=195.6

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|+|++|    ++++||||+.||+|+|||++++                                          
T Consensus        12 ~~~~~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~------------------------------------------   45 (293)
T d1p22a2          12 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTL------------------------------------------   45 (293)
T ss_dssp             CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSSC------------------------------------------
T ss_pred             CCCCCCEEEEEE----cCCEEEEEeCCCeEEEEECCCC------------------------------------------
Confidence            367788998765    5889999999999999999775                                          


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  188 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  188 (421)
                                        ++++++ .+|.+.|.+++|  ++++|++| .|++|++|++..... ....       ..+. 
T Consensus        46 ------------------~~~~~l-~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~-~~~~-------~~~~-   95 (293)
T d1p22a2          46 ------------------ECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-LNTL-------IHHC-   95 (293)
T ss_dssp             ------------------CEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-EEEE-------CCCC-
T ss_pred             ------------------cEEEEE-ecCCCCEeeeec--ccceeecccccccccccccccccc-cccc-------cccc-
Confidence                              344455 789999999987  57899998 999999999984433 3322       1122 


Q ss_pred             CeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C
Q 014644          189 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  267 (421)
Q Consensus       189 ~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~  267 (421)
                       .....+.+.. ..++++..++.+++||......... ...             +..|...+..+.+.+  ..+++++ +
T Consensus        96 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~v~~~~~~~--~~~~~~s~d  157 (293)
T d1p22a2          96 -EAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITL-RRV-------------LVGHRAAVNVVDFDD--KYIVSASGD  157 (293)
T ss_dssp             -SCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEE-EEE-------------ECCCSSCEEEEEEET--TEEEEEETT
T ss_pred             -cccccccccc-cceeecccccceeEeeccccccccc-ccc-------------ccccccccccceecc--cccccccCC
Confidence             2333455555 7899999999999999887543211 011             223466777777664  4555554 5


Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +.|++||+++ ++.+..+.++...+               ..+.+  ++.++++++.||.|++||+++. .......++.
T Consensus       158 ~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  218 (293)
T d1p22a2         158 RTIKVWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHE  218 (293)
T ss_dssp             SEEEEEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCS
T ss_pred             CceeeecCCC-CcEEEEEccccccc---------------ccccC--CCCeEEEecCCCEEEEEecccc-eeeeeecccc
Confidence            9999999986 88888888776643               34444  5678999999999999999987 6677778888


Q ss_pred             CCccceeeecCCcccccccceeeeecccCc-ccCCC-----------CCccccccccccCeEEEEEccCCCeEEEec-CC
Q 014644          348 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-----------SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GN  414 (421)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~-----------~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~  414 (421)
                      ..+.......         ..|++|+.|+. ++|+.           ...+....+|...|++++|+  +++||+++ ++
T Consensus       219 ~~v~~~~~~~---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg  287 (293)
T d1p22a2         219 ELVRCIRFDN---------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDD  287 (293)
T ss_dssp             SCEEEEECCS---------SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSS
T ss_pred             eeeeeccccc---------eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCC
Confidence            7776544332         28999999999 99921           11233456889999999985  56899988 55


Q ss_pred             ceEEEe
Q 014644          415 SLFFHY  420 (421)
Q Consensus       415 ~~~i~~  420 (421)
                      .++||+
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            699996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.1e-27  Score=213.36  Aligned_cols=247  Identities=15%  Similarity=0.166  Sum_probs=192.0

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +..+++ +||.+.|++++|+|++++|++| .||+|++||+. .++.+..+       ..|...|.+++|+|++ .+++++
T Consensus        46 ~~~~tL-~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~-~~~~~~~~-------~~~~~~v~~v~~~~~~-~~l~~~  115 (340)
T d1tbga_          46 RTRRTL-RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAI-------PLRSSWVMTCAYAPSG-NYVACG  115 (340)
T ss_dssp             CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEEE-------ECSCSCEEEEEECTTS-SEEEEE
T ss_pred             eeeEEE-CCCCCCEEEEEECCCCCEEEEEECCCceeeeecc-cceeEEEE-------ecccccEEeeEeeccc-eeeeee
Confidence            566778 9999999999999999999999 99999999998 56666554       6789999999999999 999999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~  286 (421)
                      +.|+.+++|+.............+             .+|...........+........+.....+.... ........
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  181 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSREL-------------AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET-GQQTTTFT  181 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEE-------------CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT-TEEEEEEE
T ss_pred             cccceeecccccccccccccceec-------------cccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999999987754332222222             2234555555555555444445558888888765 44444444


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCccccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL  366 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (421)
                      .+...+               ....+.+.+.++++|+.|+.|++||++++ .....+.+|..++.+++|+|+       .
T Consensus       182 ~~~~~~---------------~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~-------~  238 (340)
T d1tbga_         182 GHTGDV---------------MSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPN-------G  238 (340)
T ss_dssp             CCSSCE---------------EEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECCCSSCEEEEEECTT-------S
T ss_pred             ccceeE---------------eeeccccccceeEEeecCceEEEEECCCC-cEEEEEeCCCCCeEEEEECCC-------C
Confidence            444332               57888899999999999999999999987 677889999999999999988       3


Q ss_pred             ceeeeecccCc-ccCCCC--Cccc--cccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          367 SNLTRGLYRQA-HENSSS--GHHE--LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       367 ~~l~~g~~d~~-~iw~~~--~~~~--~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      ..|++|+.|+. ++|+..  ....  ....+...|..++|+|++++|++|+ ++.+++|+.
T Consensus       239 ~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            48999999999 999332  2222  2335567899999999999999998 566999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-28  Score=216.52  Aligned_cols=290  Identities=8%  Similarity=-0.020  Sum_probs=194.7

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|++.|++|+|  +|++++||+|+.||+|+|||++++....                                      
T Consensus         8 ~~h~d~I~~l~f--sp~~~~L~s~s~Dg~v~iwd~~~~~~~~--------------------------------------   47 (342)
T d1yfqa_           8 QAPKDYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNV--------------------------------------   47 (342)
T ss_dssp             SCCSSCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEE--------------------------------------
T ss_pred             CCCCCCEEEEEE--eCCCCEEEEEECCCeEEEEEccCCCcce--------------------------------------
Confidence            478999999999  6889999999999999999987643100                                      


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCC-CCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  187 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  187 (421)
                                        .+...  .+|...|.+++|+|+ +.+|++| .|++|++|++..........       ..+.
T Consensus        48 ------------------~~~~~--~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~-------~~~~  100 (342)
T d1yfqa_          48 ------------------DLLQS--LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT-------NNEA  100 (342)
T ss_dssp             ------------------EEEEE--EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB-------SCCC
T ss_pred             ------------------EEEEe--cCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc-------cccc
Confidence                              11122  368999999999986 4578888 99999999998443332221       2233


Q ss_pred             CCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC
Q 014644          188 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  267 (421)
Q Consensus       188 ~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (421)
                      .......+.++. ..+++++.++++++||++.+............           ...........+.+++..+++++.
T Consensus       101 ~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
T d1yfqa_         101 NLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-----------NNTKVKNKIFTMDTNSSRLIVGMN  168 (342)
T ss_dssp             CSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS-----------SSSSSCCCEEEEEECSSEEEEEES
T ss_pred             cccccccccccc-ccccccccccccceeeccccccceeeeccccc-----------ccccceeeeeeeeccCCceeeecC
Confidence            344455566666 89999999999999998775433211111111           001223456677788888888865


Q ss_pred             -CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc-CCCCEEEEeeCCCeEEEEecCCCCCc------
Q 014644          268 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAG------  339 (421)
Q Consensus       268 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~s~dg~i~iwd~~~~~~~------  339 (421)
                       +.|++||++. ...............            ......+. +++..+++++.||.+.+|++......      
T Consensus       169 d~~i~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         169 NSQVQWFRLPL-CEDDNGTIEESGLKY------------QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             TTEEEEEESSC-CTTCCCEEEECSCSS------------CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             CCcEEEEeccc-Ccccceeeeeccccc------------ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence             9999999986 433322222111110            01344444 46788999999999999998754211      


Q ss_pred             --------eeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC--CccccccccccCeEEEEEccCCCeE
Q 014644          340 --------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       340 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~--~~~~~~~~~~~~v~~~~~spd~~~l  408 (421)
                              ......|...+.+++|+|+       ..+|++|+.||. ++|+..  ..+.. ......+..++|+|++++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~-------~~~lasg~~Dg~v~vWD~~~~~~l~~-~~~~~~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPR-------HKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNEDSVVKIACSDNIL  307 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTT-------TCCEEEEETTSCEEEEETTTTEEEEE-CCCCSSSEEEEEEECSSEE
T ss_pred             ceeeeeeeccCCCcccccceeEEecCC-------ccEEEEECCCCEEEEEECCCCcEEEE-ecCCCCCEEEEEEeCCCEE
Confidence                    1112356667889999998       348999999999 999432  23332 2223455678899999999


Q ss_pred             EEec-CCceEEE
Q 014644          409 ACAN-GNSLFFH  419 (421)
Q Consensus       409 a~~~-~~~~~i~  419 (421)
                      |+++ +|.+++|
T Consensus       308 ~~a~sdd~~~~~  319 (342)
T d1yfqa_         308 CLATSDDTFKTN  319 (342)
T ss_dssp             EEEEECTHHHHC
T ss_pred             EEEEcCCcEEEe
Confidence            9887 5544444

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.4e-27  Score=209.25  Aligned_cols=277  Identities=12%  Similarity=0.167  Sum_probs=195.9

Q ss_pred             cccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           31 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +|++.|++++|  ++ +.+|++|+.|++|++|++...+......                                    
T Consensus        51 ~H~~~V~~l~~--s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~------------------------------------   91 (355)
T d1nexb2          51 GHDGGVWALKY--AH-GGILVSGSTDRTVRVWDIKKGCCTHVFE------------------------------------   91 (355)
T ss_dssp             CCSSCEEEEEE--ET-TTEEEEEETTCCEEEEETTTTEEEEEEC------------------------------------
T ss_pred             CCCCCEEEEEE--cC-CCEEEEEecccccccccccccccccccc------------------------------------
Confidence            69999999999  34 4689999999999999998865222111                                    


Q ss_pred             ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC-C--------
Q 014644          111 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-P--------  180 (421)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~-~--------  180 (421)
                                            . ..+........+.+++.+++++ .|++|++||+.... ........ .        
T Consensus        92 ----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          92 ----------------------G-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES-SVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             ----------------------C-CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------CCCEEESCT
T ss_pred             ----------------------c-ccccccccccccccccceeeeecCCCcEEEEEccCCc-eeccccccceeccceecc
Confidence                                  0 2333445666778899999998 99999999997432 21111000 0        


Q ss_pred             -------CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEE
Q 014644          181 -------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  253 (421)
Q Consensus       181 -------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  253 (421)
                             .....|...+  ..+.+++ ++++++..|+.|++||+++++..    .....             +...+.++
T Consensus       148 ~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~~~-------------~~~~~~~~  207 (355)
T d1nexb2         148 EENPYFVGVLRGHMASV--RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILSG-------------HTDRIYST  207 (355)
T ss_dssp             TTCTTEEEEEECCSSCE--EEEEEET-TEEEEEETTSCEEEEETTTTEEE----EEECC-------------CSSCEEEE
T ss_pred             ccccceeeeeeeccccc--ccccccc-ceeeeecccceeeeeecccccce----eeeec-------------cccccccc
Confidence                   0001222233  3455667 89999999999999999886543    22222             35678899


Q ss_pred             EEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          254 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       254 ~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      .|+|++.++++++. +.|++||+++ +..+..+.+|...+               .+++++  +++|++|+.||.|++||
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCC---------------CEEEEC--SSEEEEECTTSEEEEEE
T ss_pred             cccccceeeecccccceEEeeeccc-cccccccccccccc---------------cccccc--cceeeeeeccccccccc
Confidence            99999999998866 9999999987 88888898888765               677775  57999999999999999


Q ss_pred             cCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCC--CCCccc-cccccccCeEEEEEccCCCeE
Q 014644          333 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHE-LSYNLSSKLLHLAWHPTTNLI  408 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~--~~~~~~-~~~~~~~~v~~~~~spd~~~l  408 (421)
                      +++.   ...+..|...+..+.+.+.. +     .+|++| .|+. ++|+  .++.+. ...+|...|++++|+|+. ++
T Consensus       270 ~~~~---~~~~~~~~~~~~~~~~~~~~-~-----~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~  338 (355)
T d1nexb2         270 ANDY---SRKFSYHHTNLSAITTFYVS-D-----NILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV  338 (355)
T ss_dssp             TTTC---CEEEEEECTTCCCCCEEEEC-S-----SEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EE
T ss_pred             cccc---ceecccccCCceEEEEEcCC-C-----CEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EE
Confidence            9866   34566777777776554431 2     245555 5777 9993  444443 456788999999999974 66


Q ss_pred             EEec-CCceEEE
Q 014644          409 ACAN-GNSLFFH  419 (421)
Q Consensus       409 a~~~-~~~~~i~  419 (421)
                      ++++ ++.++||
T Consensus       339 ~~~s~dg~~~l~  350 (355)
T d1nexb2         339 AAVEKDGQSFLE  350 (355)
T ss_dssp             EEEESSSCEEEE
T ss_pred             EEEECCCcEEEE
Confidence            6666 5556665

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.1e-27  Score=210.90  Aligned_cols=311  Identities=10%  Similarity=0.020  Sum_probs=215.6

Q ss_pred             EEEEEcC-CCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccccee
Q 014644           39 VRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  117 (421)
Q Consensus        39 v~~~~~~-~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  117 (421)
                      -.|  +| ||+++|+++ +|.|++||+.++...++   .+..            .+.++.+++++..++..+.+.+..+.
T Consensus         8 ~~f--SP~dG~~~a~~~-~g~v~v~d~~~~~~~~~---~~~~------------~v~~~~~spDg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           8 EDF--SPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---PEPL------------RIRYVRRGGDTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             EEE--EECGGGCEEEEE-TTEEEEECTTSSBEEEC---SCCS------------CEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred             ccc--cCCCCCEEEEEE-CCeEEEEECCCCcEEEc---cCCC------------CEEEEEECCCCCEEEEEEcCCCCEEE
Confidence            457  56 899998886 57999999998875543   2333            56677778888888777665556799


Q ss_pred             EEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEe
Q 014644          118 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  196 (421)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  196 (421)
                      +|+.+.+   +.. .+ ..|...|.+++|+|++++|+++ .++.+++|++. ..+....+       ..|...+.+++|+
T Consensus        70 v~d~~~~---~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~s  136 (360)
T d1k32a3          70 IYDYRTG---KAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIE-------RSREAMITDFTIS  136 (360)
T ss_dssp             EEETTTC---CEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEE-------ECSSSCCCCEEEC
T ss_pred             EEECCCC---cEE-Ee-eCCCceEEeeeecccccccceecccccccccccc-ccceeeee-------ecccccccchhhc
Confidence            9999875   443 34 6899999999999999999998 99999999998 55555544       5677889999999


Q ss_pred             cCCCCeEEEEE----------cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec
Q 014644          197 PIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  266 (421)
Q Consensus       197 p~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (421)
                      |+| ++|+.+.          .++.+++||+.+++..    ....              +...+..++|+|||++|++++
T Consensus       137 pdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~----~~~~--------------~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         137 DNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF----AATT--------------ENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             TTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE----ECSC--------------SSSBEEEEEECTTSCEEEEEE
T ss_pred             cce-eeeeeeccccccceeeccccceeeeccccCcee----eecc--------------cccccccccccCCCCEEEEEe
Confidence            999 8887654          3456899999876532    2222              245778899999999999887


Q ss_pred             C-CeEEEEECCCCCcc-------eeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCe---EEEEecCC
Q 014644          267 Y-MNLKLWDIRMDSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGV  335 (421)
Q Consensus       267 ~-~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~---i~iwd~~~  335 (421)
                      . +.+.+||... ...       ...+..+....               ..+.|+|++..++++..+..   .++|.+..
T Consensus       198 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         198 YRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGSP---------------NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             SCCCCCEECSSS-SCEECCSCBEEEEEESSTTCC---------------CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             CCCceEcccccc-cceeeccccceEEEecccCcc---------------ccceECCCcCcccccceeecccccceeeccc
Confidence            6 8999999754 211       11122222211               34567777777666554321   23444433


Q ss_pred             CCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec-C
Q 014644          336 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-G  413 (421)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~  413 (421)
                      .......+..+.+.+..+.+....+.    ..++++++.++. ++|+.....  ...+...|.+++|+|||++|++++ +
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~v~~~~~SpDG~~l~~~~~D  335 (360)
T d1k32a3         262 DPGDYRMIIPLESSILIYSVPVHGEF----AAYYQGAPEKGVLLKYDVKTRK--VTEVKNNLTDLRLSADRKTVMVRKDD  335 (360)
T ss_dssp             CCBCEEEEEECSSEEEEEECCCCCSH----HHHHHCCCCCEEEEEEETTTCC--EEEEEEEEEEEEECTTSCEEEEEETT
T ss_pred             CcCceeEeeecCCCceEEEEEecCCC----eeEEEecCCCCEEEEEECCCCe--EEEecCCcCEEEECCCCCEEEEEECC
Confidence            22334455555555544444443111    336788888888 899443321  234556799999999999999998 5


Q ss_pred             CceEEEeC
Q 014644          414 NSLFFHYA  421 (421)
Q Consensus       414 ~~~~i~~~  421 (421)
                      +.|++|++
T Consensus       336 g~i~v~d~  343 (360)
T d1k32a3         336 GKIYTFPL  343 (360)
T ss_dssp             SCEEEEES
T ss_pred             CeEEEEEC
Confidence            66999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.4e-26  Score=203.00  Aligned_cols=250  Identities=9%  Similarity=-0.012  Sum_probs=175.9

Q ss_pred             CCC-CcceEEEeecC--CCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--c
Q 014644          135 HAH-DFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--S  208 (421)
Q Consensus       135 ~~h-~~~v~~l~~~~--~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~  208 (421)
                      .+| ...|++++|+|  ++++|++| .||+|++||+...................|.++|.+++|+|++ +++++++  .
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~  137 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGR  137 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCS
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-Cccceeeccc
Confidence            566 56799999998  67899999 9999999998732221111000001224578899999999999 8877766  4


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCE-EEEecC-CeEEEEECCCCCcceeEEe
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      ++.+++|+..+++..    ..+..             |...|.+++|+|++.+ +++++. +.+++||+.. .+....+.
T Consensus       138 ~~~~~~~~~~~~~~~----~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~  199 (325)
T d1pgua1         138 DNFGVFISWDSGNSL----GEVSG-------------HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDR  199 (325)
T ss_dssp             SCSEEEEETTTCCEE----EECCS-------------CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEEC
T ss_pred             cceEEEEeecccccc----eeeee-------------cccccccccccccccceEEEeecccccccccccc-cccceecc
Confidence            678999999876543    33333             4789999999999876 455654 9999999975 55544444


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCC-CCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      .+....         .   .+.+++|+|+ +.+|++++.||.|++||++++ .....+.+|..++..+.|+...+.    
T Consensus       200 ~~~~~~---------~---~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~d----  262 (325)
T d1pgua1         200 THHKQG---------S---FVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLD----  262 (325)
T ss_dssp             SSSCTT---------C---CEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESS----
T ss_pred             cccCCC---------C---ccEEeeeccccceeccccccccceeeeeeccc-cccccccccccccccceeeeeccC----
Confidence            332211         1   1278999996 689999999999999999987 677889999999998888743111    


Q ss_pred             cceeeeecccCc-ccCC--CCCccccccccc--cCeE--EEEEccCCCeEEEec-CCceEEEeC
Q 014644          366 LSNLTRGLYRQA-HENS--SSGHHELSYNLS--SKLL--HLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       366 ~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~--~~v~--~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      +.+|++++.|+. ++|+  .++.+.....+.  ..+.  .+.|.+++ .|++++ ++.|++|+.
T Consensus       263 g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            238999999999 9994  333333333332  2333  44555554 556666 677999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3e-25  Score=196.95  Aligned_cols=256  Identities=9%  Similarity=0.018  Sum_probs=173.8

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +.++.. ++|.+.|++|+|+|++++|++| .|++|+|||++.........     ...+|..+|.+++|+|++..+|++|
T Consensus         2 ~~v~~~-~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~-----~~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_           2 QIVQIE-QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL-----QSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             EEEECS-SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE-----EEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CeEEcC-CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE-----EecCCCCCEEEEEEeCCCCCEEEEc
Confidence            455555 8999999999999999999999 99999999997444333222     1246999999999999864789999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEE
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~  285 (421)
                      +.|+.|++|++......    .....            .+........+.+++..+++++. +.+++||++. .......
T Consensus        76 ~~d~~v~~w~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~~~~~~~  138 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSF----QALTN------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRN-YGDGVIA  138 (342)
T ss_dssp             ETTSCEEEECSSSSSSE----EECBS------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH-HTTBCEE
T ss_pred             ccccceeeeeccccccc----ccccc------------cccccccccccccccccccccccccccceeeccc-cccceee
Confidence            99999999999876533    11111            01233445556667778887765 9999999875 3322222


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCcee--EEecCCCCccceeeecCCcccc
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI--TVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      ..+.....         .......+.+.+++..+++++.|+.|++|++........  ....+........+.+..    
T Consensus       139 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  205 (342)
T d1yfqa_         139 VKNLNSNN---------TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE----  205 (342)
T ss_dssp             EEESCSSS---------SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG----
T ss_pred             eccccccc---------ccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC----
Confidence            21111100         000113567788899999999999999999987644322  223333444444444331    


Q ss_pred             cccceeeeecccCc-ccCCCC--C---------------ccccccccccCeEEEEEccCCCeEEEecC-CceEEEeC
Q 014644          364 SSLSNLTRGLYRQA-HENSSS--G---------------HHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHYA  421 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw~~~--~---------------~~~~~~~~~~~v~~~~~spd~~~la~~~~-~~~~i~~~  421 (421)
                        ...+++++.++. .+|...  .               ......+|...|++++|+|++++||+|+. +.+++|+.
T Consensus       206 --~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         206 --QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             --GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             --CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence              237888888888 777211  0               11122356678999999999999999994 56999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=192.82  Aligned_cols=251  Identities=16%  Similarity=0.191  Sum_probs=175.2

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      ++.+++ +||.+.|.+ +++++|++|+|| .|++|+|||+. .+++++.+       .+|...|.+++|+|   .+|+++
T Consensus         7 ~~~~~l-~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~-~~~~~~~~-------~~h~~~V~~v~~~~---~~l~s~   73 (342)
T d2ovrb2           7 KSPKVL-KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTL-------VGHTGGVWSSQMRD---NIIISG   73 (342)
T ss_dssp             CCCEEE-ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-TCCEEEEC-------CCCSSCEEEEEEET---TEEEEE
T ss_pred             CcCEEE-CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC-CCCEEEEE-------eCCCCCEEEEEeCC---Cccccc
Confidence            677778 899999865 366689999999 99999999998 56666554       78999999999986   479999


Q ss_pred             EcCCeEEEEECCcccccccchhhh---cccccc------------------CCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          207 SSRGFVRLVDMRQSALCDHSARIL---RDAAES------------------HGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~---~~h~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      +.|+.+++|+..............   ......                  ..................+.+....++.+
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence            999999999988754321100000   000000                  00000000001111122333445566666


Q ss_pred             cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe
Q 014644          266 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       266 ~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +. +.|++||.+. ...+..+.+|...                 ...+++++.++++|+.||.|++||++.+ .....+.
T Consensus       154 ~~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~  214 (342)
T d2ovrb2         154 AYDFMVKVWDPET-ETCLHTLQGHTNR-----------------VYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLT  214 (342)
T ss_dssp             ETTSCEEEEEGGG-TEEEEEECCCSSC-----------------EEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred             cCCCeEEEeeccc-ceeeEEEcCcccc-----------------cccccCCCCEEEEEeCCCeEEEeecccc-eeeeEec
Confidence            54 9999999986 7777778777653                 4566778999999999999999999987 6778889


Q ss_pred             cCCCCccceeeecCCcccccccceeeeecccCc-ccCCC--CCccccc---cccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          345 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS---YNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~--~~~~~~~---~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      +|...+..+.+.+.         +|++|+.|+. ++|+.  .+.....   ..|...+.+++++  ++++++|+ ++.|+
T Consensus       215 ~~~~~v~~~~~~~~---------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~  283 (342)
T d2ovrb2         215 GHQSLTSGMELKDN---------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK  283 (342)
T ss_dssp             CCCSCEEEEEEETT---------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             ccccceeEEecCCC---------EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEE
Confidence            99999988888765         8999999999 99933  2222222   2345566666655  56888888 56699


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      +|+.
T Consensus       284 iwd~  287 (342)
T d2ovrb2         284 LWDL  287 (342)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=198.47  Aligned_cols=211  Identities=13%  Similarity=0.153  Sum_probs=145.3

Q ss_pred             cccccEEEEEEEEcCC---CCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           31 EIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        31 ~h~~~V~~v~~~~~~~---~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      .+...+..++|.+..+   +.++++++.||++++|++.......... ....                            
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~-~~~~----------------------------  167 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNW----------------------------  167 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCC----------------------------
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee-eeee----------------------------
Confidence            4566788888864433   5689999999999999976432000000 0000                            


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCcc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  186 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  186 (421)
                           .....+.        ...... ..+...+.+++|+|++ +|++| .|++|++||+. .++.+..+... ..+.+|
T Consensus       168 -----~~~~~~~--------~~~~~~-~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-~~~~~~~~~~~-~~l~~h  230 (393)
T d1sq9a_         168 -----SPTLELQ--------GTVESP-MTPSQFATSVDISERG-LIATGFNNGTVQISELS-TLRPLYNFESQ-HSMINN  230 (393)
T ss_dssp             -----CCEEEEE--------EEECCS-SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-TTEEEEEEECC-C---CC
T ss_pred             -----ccceecc--------cceecc-cCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-ccccccccccc-cccccc
Confidence                 0000000        111112 4566778999999998 88898 99999999998 45555444222 356789


Q ss_pred             CCCeeEEEEecCCCCeEEEEEcCC---eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE
Q 014644          187 TEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  263 (421)
Q Consensus       187 ~~~v~~~~~~p~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (421)
                      ..+|.+++|+|++ ++|++|+.|+   .|++||+.+++..    ..+............+.+|...|++++|+||+++|+
T Consensus       231 ~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~----~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         231 SNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             CCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             cceEEEccccccc-ceeeeecCCCCcceeeecccccceee----eeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence            9999999999999 9999999887   4899999987654    222221222333344677899999999999999999


Q ss_pred             EecC-CeEEEEECCCCCcceeEEeeccCccc
Q 014644          264 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRP  293 (421)
Q Consensus       264 ~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~  293 (421)
                      +++. ++|++||+++ ++++..+++|...+.
T Consensus       306 S~s~D~~v~vWd~~~-g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKT-KERITTLNMHCDDIE  335 (393)
T ss_dssp             EEETTSEEEEEETTT-TEEEEEEECCGGGCS
T ss_pred             EECCCCEEEEEECCC-CCEEEEECCcCCccc
Confidence            9976 9999999997 999999999987664

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3e-24  Score=186.74  Aligned_cols=228  Identities=14%  Similarity=0.066  Sum_probs=170.9

Q ss_pred             ccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecc
Q 014644           30 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  109 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~  109 (421)
                      .+|...|.++.|  ++ +..+++++.|++|++|++...+                                         
T Consensus        43 ~~h~~~V~~~~~--~~-~~~~~s~s~D~~v~~w~~~~~~-----------------------------------------   78 (287)
T d1pgua2          43 QDHSNLIVSLDN--SK-AQEYSSISWDDTLKVNGITKHE-----------------------------------------   78 (287)
T ss_dssp             CCCCSCEEEEEC--CS-TTCCEEEETTTEEEETTEEEEE-----------------------------------------
T ss_pred             CCCCCCEEEEEe--cC-CCeEEEEeeccccccccccccc-----------------------------------------
Confidence            378889999999  33 4678999999999999975422                                         


Q ss_pred             cccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCC
Q 014644          110 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  189 (421)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  189 (421)
                                                 ....+..+++++++..++++.++.+.+|+.. .++....+.        +...
T Consensus        79 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~  122 (287)
T d1pgua2          79 ---------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSF-TGDIIKSVR--------LNSP  122 (287)
T ss_dssp             ---------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETT-TCCEEEEEE--------CSSC
T ss_pred             ---------------------------cccceeeeeeccCCceEEEeecccceeeecc-ceeeeeecc--------ccce
Confidence                                       1123556778888888888877778899987 455555431        2222


Q ss_pred             eeEEEEecCCCCeEEEEEcC-CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-
Q 014644          190 ITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  267 (421)
Q Consensus       190 v~~~~~~p~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (421)
                        ..+++|++ ..+++++.+ +.+++|++.......   ...             ..+...+.+++|+|++.+|++++. 
T Consensus       123 --~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~---~~~-------------~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         123 --GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF---DLK-------------TPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             --EEEEEECS-SEEEEEETTTSCEEEEETTEEEEEE---ECS-------------SCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             --eeeeeccC-cceeeeccccceeeeeeccccceee---eee-------------eccCCceeEEEeccCcccccccccc
Confidence              34677887 777777766 579999987654321   111             123568999999999999999976 


Q ss_pred             CeEEEEECCCCCcc-eeEEeeccCcccccccccCCCcceeeeEEEEcCC----------CCEEEEeeCCCeEEEEecCCC
Q 014644          268 MNLKLWDIRMDSTP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----------GLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       268 ~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----------~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      +.|++||+.+ ++. ...+.+|...+               .+++|+|+          +.++++|+.|+.|+|||+++.
T Consensus       184 g~i~i~d~~~-~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         184 GKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             SCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ccccceeecc-ccccccccccccccc---------------ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            9999999986 443 33455666544               67888764          568999999999999999887


Q ss_pred             CCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC
Q 014644          337 SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN  380 (421)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw  380 (421)
                      ......+.+|...|..+.|+++  +      .|++++.|+. ++|
T Consensus       248 ~~~~~~~~~h~~~V~~v~~~~~--~------~l~s~g~D~~v~iW  284 (287)
T d1pgua2         248 MKIIKALNAHKDGVNNLLWETP--S------TLVSSGADACIKRW  284 (287)
T ss_dssp             TCCEEETTSSTTCEEEEEEEET--T------EEEEEETTSCEEEE
T ss_pred             CeEEEEeCCCCCCeEEEEECCC--C------EEEEEECCCeEEEE
Confidence            6778888999999999999986  1      5788889999 999

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.1e-22  Score=186.86  Aligned_cols=306  Identities=8%  Similarity=-0.022  Sum_probs=197.8

Q ss_pred             ccccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           24 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        24 ~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .+.++.+.....+..++|  +|||+++++++.|++|++||+.+++....                               
T Consensus        52 ~~v~~~~~~g~~~~~v~f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~-------------------------------   98 (432)
T d1qksa2          52 YEIKTVLDTGYAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTV-------------------------------   98 (432)
T ss_dssp             CCEEEEEECSSCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEE-------------------------------
T ss_pred             CcEEEEEeCCCCeeEEEE--CCCCCEEEEEcCCCCEEEEEeeCCCceEE-------------------------------
Confidence            345556655567999999  89999999999999999999988652211                               


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEE-EEE-cCCcEEEEeCCCCceeeeeeecCC-
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKP-  180 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~-~d~~i~lwd~~~~~~~~~~~~~~~-  180 (421)
                                              ..++.. .+|.+.+.+.+|+|||++| +++ .+++|++||.. ..+....+.... 
T Consensus        99 ------------------------~~i~~~-~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~  152 (432)
T d1qksa2          99 ------------------------AEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGM  152 (432)
T ss_dssp             ------------------------EEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEE
T ss_pred             ------------------------EEEecC-CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCc
Confidence                                    111222 4566778888999999987 456 89999999998 555555442211 


Q ss_pred             ---CCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          181 ---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       181 ---~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                         .....+......+.++|++..++++...++.|.+||..+.+..    .+...            .+...+..++|+|
T Consensus       153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~----~~~~i------------~~g~~~~~~~~sp  216 (432)
T d1qksa2         153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL----KTTEI------------SAERFLHDGGLDG  216 (432)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE----EEEEE------------ECCSSEEEEEECT
T ss_pred             cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc----eEEEE------------cccCccccceECC
Confidence               0112345667788999999445566677899999998775422    21111            0134678999999


Q ss_pred             CCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCccc---------------------------cc--ccccCCCccee
Q 014644          258 DGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP---------------------------KL--CDLYNNDSIFD  306 (421)
Q Consensus       258 ~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~---------------------------~~--~~~~~~~~~~~  306 (421)
                      ||+++++++ + +.+.++|..+ ++.+..+........                           ..  ......+..+.
T Consensus       217 dg~~~~va~~~~~~v~v~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~  295 (432)
T d1qksa2         217 SHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK  295 (432)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCCEEEEeccccceEEEeeccc-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccE
Confidence            999888764 4 8899999975 555444332111000                           00  00000111112


Q ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCCCc
Q 014644          307 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH  385 (421)
Q Consensus       307 ~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~~~  385 (421)
                      +....++|++..+++++.++..++|+..+..       .|......+++ |+       +..|++++.|+. ++|...+.
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-------~~~~~~~sv~v-pD-------g~~la~~s~d~~~k~w~~~~~  360 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------PEAEISGSVAV-FD-------IKAMTGDGSDPEFKTLPIAEW  360 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTC-------SSHHHHTCEEE-EE-------GGGCCCSSSCCCEEEECHHHH
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccCC-------CCCCeeeEEEE-Ee-------chhhcccccCCceEecccccc
Confidence            3455667777777777777777777655431       12222334443 66       348999999999 99954322


Q ss_pred             cccccccccCeEEEEEccCCCeEEEec------CCceEEEeC
Q 014644          386 HELSYNLSSKLLHLAWHPTTNLIACAN------GNSLFFHYA  421 (421)
Q Consensus       386 ~~~~~~~~~~v~~~~~spd~~~la~~~------~~~~~i~~~  421 (421)
                       ..+..+...|..++|||||+.|+++.      ++.|.||++
T Consensus       361 -~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         361 -AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             -HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             -cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence             22335667899999999999886553      356999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=1.2e-22  Score=181.92  Aligned_cols=269  Identities=11%  Similarity=0.048  Sum_probs=180.4

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCC--cEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCc
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  102 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~--~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  102 (421)
                      ..+..++|...|.+++|  +||+++|++++.+.  .|++||.++++.+.+.  .+..            .+.++.+++++
T Consensus        34 ~~~~~~~~~~~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--~~~~------------~v~~~~~spdg   97 (360)
T d1k32a3          34 TYVLKVPEPLRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLG------------NVFAMGVDRNG   97 (360)
T ss_dssp             SBEEECSCCSCEEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEECC--CCCC------------SEEEEEECTTS
T ss_pred             CcEEEccCCCCEEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEee--CCCc------------eEEeeeecccc
Confidence            34556789999999999  79999998877664  8999999998765543  2444            45566666777


Q ss_pred             eeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-----------cCCcEEEEeCCCCce
Q 014644          103 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQ  171 (421)
Q Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----------~d~~i~lwd~~~~~~  171 (421)
                      .++..+..  ...+.+|+.+..   ++.+.+ ..|...+.+++|+|+|++|+.+           .++.+++|++. .++
T Consensus        98 ~~l~~~~~--~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~  170 (360)
T d1k32a3          98 KFAVVAND--RFEIMTVDLETG---KPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRK  170 (360)
T ss_dssp             SEEEEEET--TSEEEEEETTTC---CEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTE
T ss_pred             cccceecc--cccccccccccc---ceeeee-ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCc
Confidence            77776655  557889999887   666676 7888999999999999999863           24569999998 444


Q ss_pred             eeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccc---hhhhccccccCCC---------
Q 014644          172 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS---ARILRDAAESHGS---------  239 (421)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~h~~~~~~---------  239 (421)
                      ....        ..+...+.+++|+|+| +.|++++.++.+++||..........   ......|......         
T Consensus       171 ~~~~--------~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  241 (360)
T d1k32a3         171 IFAA--------TTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT  241 (360)
T ss_dssp             EEEC--------SCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred             eeee--------cccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCc
Confidence            4432        4566778999999999 99999999999999997654221000   0000000000000         


Q ss_pred             --------------cccccccccceeEEEEcCCCC-------------EEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          240 --------------KSFFTEIIASISDIKFANDGQ-------------HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       240 --------------~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                                    ...+.........+...+++.             ++++++. +.|++||+.+ ++. ..+.++   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~~~~~---  316 (360)
T d1k32a3         242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RKV-TEVKNN---  316 (360)
T ss_dssp             CCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CCE-EEEEEE---
T ss_pred             ccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-CeE-EEecCC---
Confidence                          000011112223333333322             3334444 8899999975 432 233221   


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecC
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      +               .+++|+|||++|++++.||.|++||++.+ ....++..+
T Consensus       317 v---------------~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~-~~~~~~~~d  355 (360)
T d1k32a3         317 L---------------TDLRLSADRKTVMVRKDDGKIYTFPLEKP-EDERTVETD  355 (360)
T ss_dssp             E---------------EEEEECTTSCEEEEEETTSCEEEEESSCT-TSCEECCCC
T ss_pred             c---------------CEEEECCCCCEEEEEECCCeEEEEECCCC-CcceEEEec
Confidence            2               68999999999999999999999999987 444444433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-22  Score=170.74  Aligned_cols=231  Identities=10%  Similarity=0.093  Sum_probs=167.4

Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  206 (421)
                      +.++.. .+|...|+|++|  ++++|++| .||+|+|||++ .+++++.+       .+|.+.|.+++|  ++ ++|+++
T Consensus         6 ~~i~~~-~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~-~~~~~~~l-------~~H~~~V~~v~~--~~-~~l~s~   71 (293)
T d1p22a2           6 QRIHCR-SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-TLECKRIL-------TGHTGSVLCLQY--DE-RVIITG   71 (293)
T ss_dssp             CCEECC-CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-SCCEEEEE-------CCCSSCEEEEEC--CS-SEEEEE
T ss_pred             EEEecc-CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC-CCcEEEEE-------ecCCCCEeeeec--cc-ceeecc
Confidence            334444 678889998765  79999999 99999999998 56666655       789999999886  55 799999


Q ss_pred             EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcce--e
Q 014644          207 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV--A  283 (421)
Q Consensus       207 ~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~--~  283 (421)
                      +.|+.|++|++..+...    .....               .......+.+....++++.. +.+.+|+........  .
T Consensus        72 s~D~~i~~~~~~~~~~~----~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEML----NTLIH---------------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             ETTSCEEEEESSSCCEE----EEECC---------------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ccccccccccccccccc----ccccc---------------cccccccccccccceeecccccceeEeeccccccccccc
Confidence            99999999999987543    11111               12223344455566666655 999999997633222  2


Q ss_pred             EEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccc
Q 014644          284 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (421)
                      .+..|...+               ..+.+  ....+++++.|+.|++||+.++ .....+.++...+..+.+.+.     
T Consensus       133 ~~~~~~~~v---------------~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~-----  189 (293)
T d1p22a2         133 VLVGHRAAV---------------NVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYRDR-----  189 (293)
T ss_dssp             EECCCSSCE---------------EEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETT-----
T ss_pred             ccccccccc---------------cccee--cccccccccCCCceeeecCCCC-cEEEEEcccccccccccCCCC-----
Confidence            223333321               33444  4567889999999999999987 667788889888877777655     


Q ss_pred             cccceeeeecccCc-ccCC--CCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          364 SSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       364 ~~~~~l~~g~~d~~-~iw~--~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                          .+++++.|+. ++|+  ....+....++...+.  .+++++.+|++++ ++.+++|+
T Consensus       190 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         190 ----LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             ----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEE
T ss_pred             ----eEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCCCEEEEEE
Confidence                8999999999 9993  3344445556666665  4677888999888 56699996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=3.6e-22  Score=183.60  Aligned_cols=300  Identities=8%  Similarity=-0.004  Sum_probs=191.4

Q ss_pred             cccccccccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      ..++.+.+...+..++|  +|||+++++++.|++|++||+.+++.....                               
T Consensus        53 ~~~~~l~~g~~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-------------------------------   99 (426)
T d1hzua2          53 KIVKVIDTGYAVHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVA-------------------------------   99 (426)
T ss_dssp             SEEEEEECCSSEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEE-------------------------------
T ss_pred             cEEEEEeCCCCeeEEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEE-------------------------------
Confidence            45566666678999999  899999999999999999999987632221                               


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCC--
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKP--  180 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~--  180 (421)
                                              .++.. .+|.+.+.+++|+|||++|++ + .++++++||.. .......+....  
T Consensus       100 ------------------------~i~~~-~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~-~~~~~~~~~~~~~~  153 (426)
T d1hzua2         100 ------------------------EIKIG-IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMT  153 (426)
T ss_dssp             ------------------------EEECC-SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEEC
T ss_pred             ------------------------EEeCC-CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC-ccceeEEeeccCCC
Confidence                                    11222 467777889999999998766 4 89999999998 455554441100  


Q ss_pred             --CCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcC
Q 014644          181 --SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  257 (421)
Q Consensus       181 --~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  257 (421)
                        .....+......+.+++++ ..++... ..+.+.+++.......    .            .....+...+..+.|+|
T Consensus       154 ~~~~~~~~~~~~~~i~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         154 VDTQTYHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNL----T------------VTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             SSSCCEESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECSSSSSC----E------------EEEEECCSSEEEEEECT
T ss_pred             ccceeecCCCceeEEEECCCC-CEEEEecCCCCeEEEEEeccccce----e------------eEEeccCCccEeeeECC
Confidence              0001122333445555555 3333322 3345555554433211    0            00112356788999999


Q ss_pred             CCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EE--EEeeCCCeEEEEe
Q 014644          258 DGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF--ATGSYSNLLRIFS  332 (421)
Q Consensus       258 ~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l--~~~s~dg~i~iwd  332 (421)
                      ++++++++. . ..+.+++..+ ++.+............             ....+.+.+. .+  +..+.|+.+.+|+
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTT-TEEEEEEECSSCCCCS-------------CCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             CCcEEEeeeecccceeeeeccc-ccEEEEeccCCccccc-------------ceeeeecCCCCceEEeccCCCceEEEee
Confidence            999988764 3 8899999986 7776666544332211             1233333322 22  2344578888887


Q ss_pred             cCCCC------CceeEEecCCCCccceeeecCCcccccccceee-------eecccCc-ccCC--CCCcccc--------
Q 014644          333 HGVGS------AGGITVEAGKNENRKPILQAAPRARRSSLSNLT-------RGLYRQA-HENS--SSGHHEL--------  388 (421)
Q Consensus       333 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~g~~d~~-~iw~--~~~~~~~--------  388 (421)
                      .....      .....+.+|...+..++|+|+  ++     .|+       ++..++. ++|+  .++....        
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd--g~-----~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~  355 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK--SS-----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA  355 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTT--CS-----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCCC--Cc-----eEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhc
Confidence            65431      456788999999999999999  44     676       4667788 9993  2332222        


Q ss_pred             -ccccccCeEEEEEccCCCeEEEec------CCceEEEeC
Q 014644          389 -SYNLSSKLLHLAWHPTTNLIACAN------GNSLFFHYA  421 (421)
Q Consensus       389 -~~~~~~~v~~~~~spd~~~la~~~------~~~~~i~~~  421 (421)
                       ...+...|..++|||||+.|++++      ++.|.||++
T Consensus       356 ~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             CCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence             224566799999999999775431      455999974

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=2.4e-19  Score=156.08  Aligned_cols=229  Identities=8%  Similarity=0.056  Sum_probs=158.6

Q ss_pred             ceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEEC
Q 014644          140 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  217 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~  217 (421)
                      .+..++|+|||++|+ ++ .++.|++||+. ..+.+..+       ..+ ..+..+.|++++...++++..++.+.+|+.
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~-t~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATV-------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEE-------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECC-CCceeeee-------ecc-ccccccccccccccccccccccceeeeccc
Confidence            467899999999875 56 89999999998 55666554       333 346889999999445555667889999999


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      .+++..    ..+..              ......+.|+|+|+.++.. .. +.+.+|+..+ ......+..+...    
T Consensus       104 ~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----  160 (301)
T d1l0qa2         104 TSNTVA----GTVKT--------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSVGRSP----  160 (301)
T ss_dssp             TTTEEE----EEEEC--------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECCSSE----
T ss_pred             ccceee----eeccc--------------cccceEEEeecCCCeeeeeeccccceeeeeccc-cceeeecccCCCc----
Confidence            887543    33333              3567889999999988755 44 8899999986 7777766655543    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCC-CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeee--
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG--  372 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--  372 (421)
                                  ..+.++|+++.+++++.+ +.+.+|+.... .....+..+ .....+++.++  +.     .++.+  
T Consensus       161 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~--g~-----~~~v~~~  219 (301)
T d1l0qa2         161 ------------KGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVE-AAPSGIAVNPE--GT-----KAYVTNV  219 (301)
T ss_dssp             ------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECS-SEEEEEEECTT--SS-----EEEEEEE
T ss_pred             ------------eEEEeeccccceeeecccccccccccccce-eeeeccccc-CCcceeecccc--cc-----ccccccc
Confidence                        588999999988877765 66777776654 444444443 33456777776  33     33332  


Q ss_pred             -cccCc-ccCCCC-CccccccccccCeEEEEEccCCCeE-EEec-CCceEEEeC
Q 014644          373 -LYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLI-ACAN-GNSLFFHYA  421 (421)
Q Consensus       373 -~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~l-a~~~-~~~~~i~~~  421 (421)
                       ..++. .+|+.. ............+..++|+|||++| ++++ ++.|.+|++
T Consensus       220 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         220 DKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence             23344 777432 2333334455678999999999976 4555 567999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.1e-20  Score=167.40  Aligned_cols=282  Identities=11%  Similarity=0.020  Sum_probs=181.4

Q ss_pred             CeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeeccccee
Q 014644           48 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  127 (421)
Q Consensus        48 ~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  127 (421)
                      +++++++.|++|++||++++++.....                                                     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~-----------------------------------------------------   28 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------------------------------------------------   28 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEE-----------------------------------------------------
Confidence            579999999999999999876222111                                                     


Q ss_pred             eeeeeecCCCCcceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEE
Q 014644          128 RCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  205 (421)
Q Consensus       128 ~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  205 (421)
                           . ..+...+.+++|+|||++++ ++ .++.|.+||+. +++....+...  ....+...+..++|+|++ +.+++
T Consensus        29 -----~-~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~-t~~~~~~~~~~--~~~~~~~~~~~v~~s~dg-~~l~~   98 (337)
T d1pbyb_          29 -----I-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLS--TPEERVKSLFGAALSPDG-KTLAI   98 (337)
T ss_dssp             -----C-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECC--BTTEEEECTTCEEECTTS-SEEEE
T ss_pred             -----C-CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC-CCcEEEEEecC--CCcccccceeeEEEcCCC-cEEEE
Confidence                 0 23445577899999999874 56 89999999999 45555544221  112233456789999999 88877


Q ss_pred             EEc------------CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEE
Q 014644          206 SSS------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW  273 (421)
Q Consensus       206 ~~~------------d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~  273 (421)
                      +..            +..+.+||..++...    ..+..              ...+..++|+|||+++++++ +.+.+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~-~~~~~~  159 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGLG-RDLHVM  159 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred             eecCCcceeeeccccccceeeccccCCeEE----Eeccc--------------cCCceEEEEcCCCCEEEEEc-CCccee
Confidence            653            567888888876543    22222              34678899999999999876 467889


Q ss_pred             ECCCCCcceeEEeeccCccccccccc--------CCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEec
Q 014644          274 DIRMDSTPVATFKIHEHLRPKLCDLY--------NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA  345 (421)
Q Consensus       274 d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  345 (421)
                      |..+ ++....+..+...........        ...............+...+..++.++.+.+|++.++......+..
T Consensus       160 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         160 DPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeec-CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            9986 776666655433221100000        0000000011111122222233444567999999988555556667


Q ss_pred             CCCCccceeeecCCcccccccceeeeecccCc-ccCCCC-CccccccccccCeEEEEEccCCCeEEEec-CCceEEEeC
Q 014644          346 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA  421 (421)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~-~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~~  421 (421)
                      +........+.++  +.     .++.+  ++. ++|+.. ........+...+.+++|+|||++|++++ ++.|.+|++
T Consensus       239 ~~~~~~~~~~~~~--~~-----~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         239 MDVFYFSTAVNPA--KT-----RAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CSSCEEEEEECTT--SS-----EEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCcceEEEEeccc--ce-----EEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            7777777777776  22     44433  455 888332 33344445667889999999999999888 666999984

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=3.7e-20  Score=170.04  Aligned_cols=253  Identities=10%  Similarity=-0.031  Sum_probs=156.9

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeE-EEEEcCCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~d~~v~iwd  216 (421)
                      ..+..++|+|||++|+++ .|++|++||+.+.. ......++  ...+|...+.+++|+||| +++ +++..++.+++||
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~-~~~~~~i~--~~~~~~~~~~s~~~spDG-~~l~v~~~~~~~v~i~d  137 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK--IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMD  137 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE--CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc-eeEEEEEe--CCCCCcceEEeeeecCCC-CEEEEeecCCCeEEEEc
Confidence            358899999999999998 99999999998433 22222111  224567777888899999 665 5556899999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ...+...    ..+..|......  ....+......+.+++++..++.. .+ +.+.+++.............+....  
T Consensus       138 ~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--  209 (426)
T d1hzua2         138 GETLEPK----QIVSTRGMTVDT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL--  209 (426)
T ss_dssp             TTTCCEE----EEEECCEECSSS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSE--
T ss_pred             CCcccee----EEeeccCCCccc--eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCcc--
Confidence            9987643    222221111110  111224456778888888887765 33 7777777764222222222333322  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCceeEEec--CCCCccceeeecCCcccccccceeee
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEA--GKNENRKPILQAAPRARRSSLSNLTR  371 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~  371 (421)
                                   ..+.|+|++++++++. .+..+.+++..++ ........  +..+.....+.....+.    ...+.
T Consensus       210 -------------~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  271 (426)
T d1hzua2         210 -------------ADGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKYGP----VWSTS  271 (426)
T ss_dssp             -------------EEEEECTTSCEEEEEETTCSEEEEEETTTT-EEEEEEECSSCCCCSCCEEEEETTTEE----EEEEE
T ss_pred             -------------EeeeECCCCcEEEeeeecccceeeeecccc-cEEEEeccCCcccccceeeeecCCCCc----eEEec
Confidence                         6899999999887766 4667899999877 33333332  22333333333332111    11222


Q ss_pred             ecccCc-ccC---------CCCCccccccccccCeEEEEEccCCCeEEEec--------CCceEEEeC
Q 014644          372 GLYRQA-HEN---------SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--------GNSLFFHYA  421 (421)
Q Consensus       372 g~~d~~-~iw---------~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~--------~~~~~i~~~  421 (421)
                      ...++. .+|         ...+....+.+|...+..++||||+++|++..        ++.+.+|+.
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence            233333 333         11234455668888999999999999999632        467999973

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.7e-20  Score=166.68  Aligned_cols=290  Identities=10%  Similarity=0.026  Sum_probs=184.8

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      ++++++|++++.|++|.+||+.++++.                                                     
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~-----------------------------------------------------   31 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------------------------------------   31 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEE-----------------------------------------------------
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEE-----------------------------------------------------
Confidence            688999999999999999999987622                                                     


Q ss_pred             cceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCC
Q 014644          124 SVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  201 (421)
Q Consensus       124 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  201 (421)
                             +++.-.|...+.+++|+|||+++++ + .++.|++||+. .++....+.... ....+...+..++|+||| +
T Consensus        32 -------~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~-t~~~~~~~~~~~-~~~~~~~~~~~v~~s~DG-~  101 (346)
T d1jmxb_          32 -------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSS-VPGEVGRSMYSFAISPDG-K  101 (346)
T ss_dssp             -------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCC-STTEEEECSSCEEECTTS-S
T ss_pred             -------EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc-cCeeeeeecccc-cccccCCceEEEEEecCC-C
Confidence                   1121234456789999999998754 5 78999999998 555555442211 112233456789999999 7


Q ss_pred             eEEEEE------------cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCe
Q 014644          202 LLAYSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  269 (421)
Q Consensus       202 ~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  269 (421)
                      ++++++            .+..+.+||..+++..    ..+..+           .....+..+.++++++.++++  ..
T Consensus       102 ~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~~  164 (346)
T d1jmxb_         102 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRTF-----------PMPRQVYLMRAADDGSLYVAG--PD  164 (346)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEEE-----------ECCSSCCCEEECTTSCEEEES--SS
T ss_pred             EEEEEecCCcceeeeeccCcceEEEEecccceee----eEEEee-----------eccCceEEEEecCCCEEEEeC--Cc
Confidence            777664            4677888888776533    222221           012345667788888766654  46


Q ss_pred             EEEEECCCCCcceeEEeeccCcccccccc--------cCCCcceee--eEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          270 LKLWDIRMDSTPVATFKIHEHLRPKLCDL--------YNNDSIFDK--FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       270 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      +.+|++.+ ++.+..+..+..........        ...+....+  ....+.+....++++..++.+.+|++.++...
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         165 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             ceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence            88999986 77777766544322111000        000000000  11122233444556666778999999988666


Q ss_pred             eeEEecCCCCccceeeecCCcccccccceeeeecccCcccCCC-CCccccccccccCeEEEEEccCCCeEEEec-CCceE
Q 014644          340 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF  417 (421)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~~iw~~-~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~  417 (421)
                      ......+...+....++++  +.     .++....+...+|+. .........+...+.+++|+|||++|++++ ++.|.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPK--DP-----NQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             EEEEEECSSCEEEEEECSS--CT-----TEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             EEEeecccceeEEEEEeCC--CC-----EEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            6777788888888888777  22     566665554488832 233333344556799999999999999988 66799


Q ss_pred             EEeC
Q 014644          418 FHYA  421 (421)
Q Consensus       418 i~~~  421 (421)
                      +|++
T Consensus       317 v~D~  320 (346)
T d1jmxb_         317 VFNP  320 (346)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.6e-18  Score=150.77  Aligned_cols=252  Identities=10%  Similarity=0.095  Sum_probs=173.2

Q ss_pred             cccccccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           25 DYLKSLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        25 ~~~~~~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      +.++++........++|  +|+|++| ++++.+++|++||+.+++......  ....            ...+.+.++..
T Consensus        23 ~~~~~i~~g~~p~~va~--spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--~~~~------------~~~~~~~~~~~   86 (301)
T d1l0qa2          23 KVTATIPVGSNPMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGSS------------PQGVAVSPDGK   86 (301)
T ss_dssp             EEEEEEECSSSEEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSSS------------EEEEEECTTSS
T ss_pred             eEEEEEECCCCceEEEE--eCCCCEEEEEECCCCEEEEEECCCCceeeeee--cccc------------ccccccccccc
Confidence            34555566677889999  7999977 566789999999999887332221  1121            22233334443


Q ss_pred             eeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEE-E-cCCcEEEEeCCCCceeeeeeecCCC
Q 014644          104 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPS  181 (421)
Q Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~-~d~~i~lwd~~~~~~~~~~~~~~~~  181 (421)
                      .+..... ....+.+|+....   +....+  .+...+.++.|+|++..++. + .++.+.+|+.. .......+     
T Consensus        87 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----  154 (301)
T d1l0qa2          87 QVYVTNM-ASSTLSVIDTTSN---TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-----  154 (301)
T ss_dssp             EEEEEET-TTTEEEEEETTTT---EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-----
T ss_pred             ccccccc-ccceeeecccccc---eeeeec--cccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeec-----
Confidence            3322221 1346778888776   666665  34456789999999998876 4 78899999998 45555443     


Q ss_pred             CCCccCCCeeEEEEecCCCCeEEEEEcC-CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          182 NMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       182 ~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                         .+...+..+.++|++ ..+++++.+ +.+.+|+.......    .....              ...+..+++++++.
T Consensus       155 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~  212 (301)
T d1l0qa2         155 ---SVGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGT  212 (301)
T ss_dssp             ---ECCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSS
T ss_pred             ---ccCCCceEEEeeccc-cceeeecccccccccccccceeee----ecccc--------------cCCcceeecccccc
Confidence               233557889999998 777766654 67778877765432    22222              34577899999999


Q ss_pred             EEEEe---cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE-EEeeCCCeEEEEecCC
Q 014644          261 HLLSR---DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGV  335 (421)
Q Consensus       261 ~l~~~---~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~~s~dg~i~iwd~~~  335 (421)
                      .++.+   .. +.|++||+.+ ++.+..+..+..+                .+++|+|||++| ++++.++.|++||+.+
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccceeeeeeeeecCC-CeEEEEEcCCCCE----------------EEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            87653   22 7899999986 7777777655443                689999999987 5777899999999998


Q ss_pred             CCCceeEEe
Q 014644          336 GSAGGITVE  344 (421)
Q Consensus       336 ~~~~~~~~~  344 (421)
                      + +...++.
T Consensus       276 ~-~~~~~~~  283 (301)
T d1l0qa2         276 N-TITATMA  283 (301)
T ss_dssp             T-EEEEEEE
T ss_pred             C-eEEEEEe
Confidence            7 4455554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=4.6e-19  Score=162.50  Aligned_cols=247  Identities=10%  Similarity=-0.031  Sum_probs=147.4

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCce-eeeeeecCCCCCCccCCCeeEEEEecCCCCe-EEEEEcCCeEEEEE
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRLVD  216 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~d~~v~iwd  216 (421)
                      .+..++|+|||++|+++ .|++|++||+.+... ....+.    ...+|.+.+.++.|+||| ++ +++++.+++|++||
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~----~~~~~~~~~~s~~~SpDG-~~l~vs~~~~~~v~i~d  137 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IGSEARSIETSKMEGWED-KYAIAGAYWPPQYVIMD  137 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CCSEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEE
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe----cCCCCCCeEEecccCCCC-CEEEEEcCCCCeEEEEe
Confidence            58999999999999998 999999999984432 222221    224566677778889999 65 57888999999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPK  294 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ..+++..    ..+..|......  ....+......+.++|+|..++.+ .+ +.|.+||... .+.......+....  
T Consensus       138 ~~t~~~~----~~~~~~~~~~~~--~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~-~~~~~~~~i~~g~~--  208 (432)
T d1qksa2         138 GETLEPK----KIQSTRGMTYDE--QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERF--  208 (432)
T ss_dssp             TTTCCEE----EEEECCEECTTT--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC-SSEEEEEEEECCSS--
T ss_pred             Cccccce----eeeccCCccccc--eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC-CCcceEEEEcccCc--
Confidence            9987654    233221111111  111234567789999999887654 55 9999999875 44433332222111  


Q ss_pred             cccccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecCCCCCceeEEecCC---CCccceeeecCCcccccccceee
Q 014644          295 LCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSLSNLT  370 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~  370 (421)
                                  ...++|+|+|+++++++. ++.+.++|..+. .....+....   .......+.....+.     ..+
T Consensus       209 ------------~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~-----~~~  270 (432)
T d1qksa2         209 ------------LHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFVHPTFGP-----VWA  270 (432)
T ss_dssp             ------------EEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEEETTTEE-----EEE
T ss_pred             ------------cccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCccccccCcccceecCCCCc-----eec
Confidence                        168999999998877765 568899998876 3333322111   111112221111111     222


Q ss_pred             eec-ccCc-ccCCCCCccccccccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          371 RGL-YRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       371 ~g~-~d~~-~iw~~~~~~~~~~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      +.. .++. .+|.....  ...++...|....++|++..+++++ .+..++|.
T Consensus       271 ~~~lg~~~v~~~~~~~~--~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         271 TSHMGDDSVALIGTDPE--GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             EEBSSSSEEEEEECCTT--TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             ccccCCceEEecccccc--cccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence            221 2333 55522111  1223445666777777766666665 45566663

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.2e-18  Score=148.84  Aligned_cols=248  Identities=8%  Similarity=0.012  Sum_probs=153.3

Q ss_pred             CCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeE
Q 014644          136 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV  212 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v  212 (421)
                      .|.+.+..|+|+|||++|+++  .|+.|++|++...........     ...+...+..++|+|+| ++|++++ .++.|
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~-----~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v  107 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-----ESALPGSLTHISTDHQG-QFVFVGSYNAGNV  107 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-----EEECSSCCSEEEECTTS-SEEEEEETTTTEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee-----ecccCCCceEEEEcCCC-CEEeecccCCCce
Confidence            566789999999999999654  699999999985443333221     12244557889999999 8888877 47789


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeEEeeccC
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      .+|+........    ....           ..+...+.++.++|++++++.++.  ..|.+|+................
T Consensus       108 ~~~~~~~~~~~~----~~~~-----------~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (333)
T d1ri6a_         108 SVTRLEDGLPVG----VVDV-----------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  172 (333)
T ss_dssp             EEEEEETTEEEE----EEEE-----------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeecccccccee----cccc-----------cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence            999877654221    1111           112456788999999999887753  78999998753332222111110


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCcee---EEec------CCCCccceeeecCCc
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGI---TVEA------GKNENRKPILQAAPR  360 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~  360 (421)
                      ..       ...   ....++|++++.+++... ..+...+|+.........   .+..      .......++++++  
T Consensus       173 ~~-------~g~---~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--  240 (333)
T d1ri6a_         173 TV-------EGA---GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD--  240 (333)
T ss_dssp             CS-------TTC---CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT--
T ss_pred             ee-------cCC---CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc--
Confidence            00       000   115789999998876554 567788888765432221   1111      1122334556666  


Q ss_pred             ccccccceeeeecccCc-ccC--CCCCccccc---cccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          361 ARRSSLSNLTRGLYRQA-HEN--SSSGHHELS---YNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       361 ~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~---~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      ++    ..++.+..++. .+|  .........   ......+..++|+|||++|++++  ++.+.+|.
T Consensus       241 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         241 GR----HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             SS----EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cC----ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            33    13445555555 777  222222222   23345678899999999988776  56688883

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=7.1e-17  Score=142.38  Aligned_cols=258  Identities=9%  Similarity=0.019  Sum_probs=158.4

Q ss_pred             ccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc
Q 014644           32 IEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  110 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  110 (421)
                      +...+.+++|  +|||+++ ++++.++.|.+||+.+++............        ....+..+.++++...+..+..
T Consensus        32 ~~~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--------~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          32 AGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--------RVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--------EEECTTCEEECTTSSEEEEEEE
T ss_pred             CCCCccEEEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--------cccceeeEEEcCCCcEEEEeec
Confidence            3456788999  7999987 566789999999999988443322111110        0011222334444444433322


Q ss_pred             c----------cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecC
Q 014644          111 T----------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  179 (421)
Q Consensus       111 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~  179 (421)
                      .          ....+.+|+..+.   +.++.+ . +...+..++|+|+|++++++ .+  +.+||.. ..+....+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~-~~~~~~~~~~~  173 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETL---SRRKAF-E-APRQITMLAWARDGSKLYGLGRD--LHVMDPE-AGTLVEDKPIQ  173 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTT---EEEEEE-E-CCSSCCCEEECTTSSCEEEESSS--EEEEETT-TTEEEEEECST
T ss_pred             CCcceeeeccccccceeeccccCC---eEEEec-c-ccCCceEEEEcCCCCEEEEEcCC--cceeeee-cCcEEEEeecC
Confidence            1          1235677887776   666666 3 44568899999999999988 44  6789998 45555444221


Q ss_pred             CCCCCccCCC-----------------eeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCccc
Q 014644          180 PSNMDDLTEV-----------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  242 (421)
Q Consensus       180 ~~~~~~~~~~-----------------v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  242 (421)
                      ... ......                 ........+. ..+..++.++.+.+||+..+....   ..+            
T Consensus       174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------  236 (337)
T d1pbyb_         174 SWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDI-DPADPTAYRTGLLTMDLETGEMAM---REV------------  236 (337)
T ss_dssp             TTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS-CTTSGGGEEEEEEEEETTTCCEEE---EEE------------
T ss_pred             Ccc-ccceecCCcceeeccccccceeeeeeeeeeecc-ceeeecccCccEEEEEcCCCcEEE---EEe------------
Confidence            100 000000                 0001111111 112222344567778877654321   111            


Q ss_pred             ccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe
Q 014644          243 FTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG  322 (421)
Q Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~  322 (421)
                       ..+...+..+.++|++.+++.+. +.|++||+.+ ++.+..+......                .+++|+|||++|+++
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         237 -RIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEK-NASIKRVPLPHSY----------------YSVNVSTDGSTVWLG  297 (337)
T ss_dssp             -EECSSCEEEEEECTTSSEEEEEE-SEEEEEETTT-TEEEEEEECSSCC----------------CEEEECTTSCEEEEE
T ss_pred             -cCCCcceEEEEecccceEEEEcc-ccEEEEECCC-CcEEEEEcCCCCE----------------EEEEECCCCCEEEEE
Confidence             12355678889999999887765 7999999987 7777777544332                689999999999999


Q ss_pred             eCCCeEEEEecCCCCCceeEEe
Q 014644          323 SYSNLLRIFSHGVGSAGGITVE  344 (421)
Q Consensus       323 s~dg~i~iwd~~~~~~~~~~~~  344 (421)
                      +.+|.|++||..+. +....++
T Consensus       298 ~~~~~i~v~D~~t~-~~v~~i~  318 (337)
T d1pbyb_         298 GALGDLAAYDAETL-EKKGQVD  318 (337)
T ss_dssp             SBSSEEEEEETTTC-CEEEEEE
T ss_pred             eCCCcEEEEECCCC-cEEEEEE
Confidence            99999999999987 4444444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=7.4e-15  Score=129.11  Aligned_cols=271  Identities=9%  Similarity=0.053  Sum_probs=166.4

Q ss_pred             CccccccccccccEEEEEEEEcCCCCeEEEEe-CCCcEEEeecCCce--eEEeeecCCCCCcccccccccccceeeccCC
Q 014644           23 EFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP   99 (421)
Q Consensus        23 ~~~~~~~~~h~~~V~~v~~~~~~~~~~l~t~s-~d~~v~lwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   99 (421)
                      .+..++.++|...|..++|  +|||++|++++ .|+.|++|++....  +..........            ....++++
T Consensus        26 ~l~~~~~~~~~~~v~~la~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~------------~p~~l~~s   91 (333)
T d1ri6a_          26 ALTLTQVVDVPGQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG------------SLTHISTD   91 (333)
T ss_dssp             CEEEEEEEECSSCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS------------CCSEEEEC
T ss_pred             CeEEEEEEcCCCCEeEEEE--eCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC------------CceEEEEc
Confidence            3455667789999999999  89999885554 58999999987654  22222222222            23345566


Q ss_pred             CCceeeeecccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeee
Q 014644          100 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       100 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~  177 (421)
                      +++.++...... ...+.+|+.+..........  ..+...+.++.++|++++++.+  .+..|.+|+............
T Consensus        92 pDg~~l~v~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (333)
T d1ri6a_          92 HQGQFVFVGSYN-AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  168 (333)
T ss_dssp             TTSSEEEEEETT-TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEeecccC-CCceeeeccccccceecccc--cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence            666666555432 33567777665533333332  3566778899999999988886  677899999874433322110


Q ss_pred             cCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEc
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  256 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  256 (421)
                      ..  ...........++|++++ ..++.. ...+...+|+................   .+.    ..........++++
T Consensus       169 ~~--~~~~~g~~p~~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         169 AE--VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPE----NFSDTRWAADIHIT  238 (333)
T ss_dssp             EE--EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCT----TCCSCCCEEEEEEC
T ss_pred             ee--eeeecCCCccEEEEeccc-eeEEeeccccCceEEEeecccccceeeeeeeee---eec----CCCccccceeEEEe
Confidence            00  012234556889999998 665544 46677888887553321110000000   000    01113456778999


Q ss_pred             CCCCEEEEe-cC-CeEEEEECCCCCcceeEEee--ccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEE
Q 014644          257 NDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKI--HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIF  331 (421)
Q Consensus       257 ~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iw  331 (421)
                      +++++++.. .. +.+.+|++...+........  .....               .+++|+|||++|++++ .++.|++|
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---------------~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP---------------RGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC---------------CCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCe---------------eEEEEeCCCCEEEEEECCCCeEEEE
Confidence            999988765 34 89999998763433322211  11111               5899999999877665 56899999


Q ss_pred             ecCC
Q 014644          332 SHGV  335 (421)
Q Consensus       332 d~~~  335 (421)
                      +++.
T Consensus       304 ~id~  307 (333)
T d1ri6a_         304 EIVG  307 (333)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            6643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=9.3e-16  Score=135.56  Aligned_cols=261  Identities=9%  Similarity=0.014  Sum_probs=157.9

Q ss_pred             ccccccEEEEEEEEcCCCCeE-EEEeCCCcEEEeecCCceeEE-eeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           30 LEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        30 ~~h~~~V~~v~~~~~~~~~~l-~t~s~d~~v~lwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      +.|...+.+++|  +||++++ ++++.++.|++||+.+++... +.........        ......+.+++++.++..
T Consensus        36 ~~~~~~p~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~--------~~~~~~v~~s~DG~~l~v  105 (346)
T d1jmxb_          36 MPDKFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV--------GRSMYSFAISPDGKEVYA  105 (346)
T ss_dssp             CSSCCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE--------EECSSCEEECTTSSEEEE
T ss_pred             cCCCCCcceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc--------CCceEEEEEecCCCEEEE
Confidence            345667889999  7999876 555678999999999987432 2221111100        011223444555554443


Q ss_pred             cccc----------cccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee
Q 014644          108 LEWT----------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD  177 (421)
Q Consensus       108 g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~  177 (421)
                      ...+          ....+.+|+..+......+...  .....+..+.+++++..++++  +.+.+|++. ..+....+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~  180 (346)
T d1jmxb_         106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG--PDIYKMDVK-TGKYTVALP  180 (346)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES--SSEEEECTT-TCCEEEEEC
T ss_pred             EecCCcceeeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC--CcceEEEcc-CCCEEEEEe
Confidence            3221          1235667777665332333322  123345666777778766654  348889987 455554442


Q ss_pred             cCCCCCCccCCCeeEEEEecCCC-------------------------CeEEEEEcCCeEEEEECCcccccccchhhhcc
Q 014644          178 MKPSNMDDLTEVITSAEFHPIYC-------------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRD  232 (421)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~p~~~-------------------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  232 (421)
                      ..        .....+.++|++.                         ..++++..+..+.+||+..+....   ..   
T Consensus       181 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---  246 (346)
T d1jmxb_         181 LR--------NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT---QE---  246 (346)
T ss_dssp             ST--------TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE---EE---
T ss_pred             cC--------CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE---EE---
Confidence            11        1122233333331                         233344455566677766654221   11   


Q ss_pred             ccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE
Q 014644          233 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  312 (421)
Q Consensus       233 h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (421)
                                ...+...+..+.+++++.+++....+.|.+||+.+ ++.+..+..... +               .+++|
T Consensus       247 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~va~  299 (346)
T d1jmxb_         247 ----------FADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHT-Y---------------YCVAF  299 (346)
T ss_dssp             ----------EEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSC-C---------------CEEEE
T ss_pred             ----------eecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCC-E---------------EEEEE
Confidence                      12235678889999999988887668899999986 777776654332 2               68999


Q ss_pred             cCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCC
Q 014644          313 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK  347 (421)
Q Consensus       313 sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  347 (421)
                      +|||++|++++.||.|++||++++ +.+..+....
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~-~~i~~i~~p~  333 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKLPG  333 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTT-EEEEEEECSS
T ss_pred             cCCCCEEEEEeCCCcEEEEECccC-CEEEEEECCC
Confidence            999999999999999999999987 5555565443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=8.7e-14  Score=124.39  Aligned_cols=319  Identities=8%  Similarity=-0.094  Sum_probs=191.1

Q ss_pred             cccccccEEEEEEEEcCCCCeEEEE-----eCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCce
Q 014644           29 SLEIEEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  103 (421)
Q Consensus        29 ~~~h~~~V~~v~~~~~~~~~~l~t~-----s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  103 (421)
                      .-.+..++..+++  +|+++.++..     +.++.|.+||..+++....... +..              ..+.++++++
T Consensus        16 ~~~~~~p~~~~a~--spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~--------------~~~a~SpDG~   78 (373)
T d2madh_          16 AGAADGPTNDEAP--GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFL--------------PNPVAAHSGS   78 (373)
T ss_pred             cccCCCCcccccc--CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCC--------------ccEEEcCCCC
Confidence            3457788899999  7999987765     3446799999998883332211 111              1234555555


Q ss_pred             eeeecccc--------cccceeEEeecccceeeeeeeecCCCCcce-------EEEeecCCCCEEEEE---cCCcEEEEe
Q 014644          104 HGYHLEWT--------ENMATKIANVGNSVHARCQKVYPHAHDFNI-------NSISNNSDCETFVSA---DDLRINLWN  165 (421)
Q Consensus       104 ~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~~~~~~l~s~---~d~~i~lwd  165 (421)
                      ++......        ....+.+||..+.   +.+..+ ..+....       ..+.|+++++.++..   .++.+.+|+
T Consensus        79 ~l~va~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~  154 (373)
T d2madh_          79 EFALASTSFSRIAKGKRTDYVEVFDPVTF---LPIADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             EEEEEeecCCcccccccceEEEEEECCCC---cEEEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence            55544321        1346899999887   666555 4444333       456788888876653   456788888


Q ss_pred             CCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccc
Q 014644          166 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  245 (421)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (421)
                      .. ..+...           +.....++.++|++...+++.+.|+.+.+||...+............           ..
T Consensus       155 ~~-~~~~~~-----------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~-----------~~  211 (373)
T d2madh_         155 QG-GSSDDQ-----------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT-----------AA  211 (373)
T ss_pred             cc-CCeEEE-----------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc-----------cC
Confidence            77 333222           33446788999999666788899999999999876543211111110           11


Q ss_pred             cccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeE--EeeccCcccccccccCCCcceeeeEEEEcCCCCEE----
Q 014644          246 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF----  319 (421)
Q Consensus       246 ~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l----  319 (421)
                      .......+.+++++.+++.+.++.+.+|+... ......  ...........  .....   ....++++|++..+    
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         212 QNLLTQPAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKAD--TWRPG---GWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             ccceeeeEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEee--eeccC---cceeeEEecCCCeEEEec
Confidence            12234566777777777666668899999875 332211  11111100000  00000   00245666665544    


Q ss_pred             ------EEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeecccCc-ccC--CCCCcccccc
Q 014644          320 ------ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSY  390 (421)
Q Consensus       320 ------~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw--~~~~~~~~~~  390 (421)
                            ++...++.+.+||+.++ .....+ .+...+..++|+|+  |+   ..++++++.++. ++|  ..++.+....
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~-~~~~~~~~~a~spD--G~---~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVG-QTSSQI-SLGHDVDAISVAQD--GG---PDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCC-cEEEEe-cCCCCeeEEEECCC--CC---EEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence                  44556778999999887 444444 35566788999998  43   125578899998 999  3455555555


Q ss_pred             ccccCeEEEEEccC
Q 014644          391 NLSSKLLHLAWHPT  404 (421)
Q Consensus       391 ~~~~~v~~~~~spd  404 (421)
                      .+....+.++.-++
T Consensus       359 ~~g~~P~~l~~~~~  372 (373)
T d2madh_         359 ELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCCcEEEEecC
Confidence            56666666665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=2.1e-14  Score=127.53  Aligned_cols=263  Identities=10%  Similarity=0.031  Sum_probs=157.5

Q ss_pred             cEEEEEEEEcCCCCeEEEE----------eCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCcee
Q 014644           35 KINRVRWCAAPNGSMFILS----------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  104 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~----------s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  104 (421)
                      .+..++|  +||+++|+++          +.|+.|++||..+++........... ...+     ........+++++.+
T Consensus        48 ~~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~-~~~~-----~~~~~~~~~s~dg~~  119 (355)
T d2bbkh_          48 FLPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-RFLV-----GTYPWMTSLTPDGKT  119 (355)
T ss_dssp             SSCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-CCCB-----SCCGGGEEECTTSSE
T ss_pred             CCCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc-eeec-----CCCCceEEEecCCCe
Confidence            3346889  7999988765          34889999999998843322211111 0000     011122345556655


Q ss_pred             eeecccccccceeEEeecccceeeeeeeecCCCC-------cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeee
Q 014644          105 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHD-------FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  175 (421)
Q Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~  175 (421)
                      +............+|+..+.   +.++.+ ..+.       .....+.+++|++.++..  .++.+.+++.....     
T Consensus       120 ~~v~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----  190 (355)
T d2bbkh_         120 LLFYQFSPAPAVGVVDLEGK---AFKRML-DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----  190 (355)
T ss_dssp             EEEEECSSSCEEEEEETTTT---EEEEEE-ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----
T ss_pred             eEEecCCCCceeeeeecCCC---cEeeEE-ecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----
Confidence            55544444556788888776   444444 2222       122345566666666554  45555555544111     


Q ss_pred             eecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEE
Q 014644          176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  255 (421)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  255 (421)
                              ..+...+....+.+++ ..++.++.++.+++|++..+....  ......+..   ..............+++
T Consensus       191 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~---~~~~~~~~p~~~~~~~~  256 (355)
T d2bbkh_         191 --------PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKF--LPAVEALTE---AERADGWRPGGWQQVAY  256 (355)
T ss_dssp             --------CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEE--CCCEESSCH---HHHHTTEEECSSSCEEE
T ss_pred             --------ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEE--EeccCCccc---ceEeeeeeccceEEEEE
Confidence                    2233445666788887 888899999999999998765321  011110000   00000011223456899


Q ss_pred             cCCCCEEEEec----------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC--EEEEe
Q 014644          256 ANDGQHLLSRD----------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFATG  322 (421)
Q Consensus       256 s~~~~~l~~~~----------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l~~~  322 (421)
                      ++++..++...          . ..|.+||..+ ++.+..+......                .+++|+|||+  +++++
T Consensus       257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALS  319 (355)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEE
T ss_pred             eCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCCCCeEEEEEE
Confidence            99999887532          1 4799999987 7777777654432                6899999997  45667


Q ss_pred             eCCCeEEEEecCCCCCceeEEecC
Q 014644          323 SYSNLLRIFSHGVGSAGGITVEAG  346 (421)
Q Consensus       323 s~dg~i~iwd~~~~~~~~~~~~~~  346 (421)
                      ..|+.|++||++++ +....+.++
T Consensus       320 ~~d~~i~v~D~~tg-~~~~~i~~~  342 (355)
T d2bbkh_         320 TGDKTLYIHDAESG-EELRSVNQL  342 (355)
T ss_dssp             TTTTEEEEEETTTC-CEEEEECCC
T ss_pred             CCCCEEEEEECCCC-CEEEEEeCc
Confidence            78999999999998 556666654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.2e-14  Score=129.05  Aligned_cols=239  Identities=12%  Similarity=0.029  Sum_probs=138.0

Q ss_pred             EEeecCCCCEEEEE-----------cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--cC
Q 014644          143 SISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SR  209 (421)
Q Consensus       143 ~l~~~~~~~~l~s~-----------~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~d  209 (421)
                      .++|+|||++|+++           .|+.|++||.. +.+....+................++|+|++ +.++.++  .+
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~  128 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPA  128 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSS
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC-CCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCC
Confidence            68999999988753           37899999998 5555554432211112223345678999999 7777665  46


Q ss_pred             CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEee
Q 014644          210 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKI  287 (421)
Q Consensus       210 ~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~  287 (421)
                      ..+.+||..+++..    ..+..+    ...  ..........+.+++|++.++... . +.+.+++... ....     
T Consensus       129 ~~~~~~~~~~~~~~----~~~~~~----~~~--~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~-~~~~-----  192 (355)
T d2bbkh_         129 PAVGVVDLEGKAFK----RMLDVP----DCY--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-FHPE-----  192 (355)
T ss_dssp             CEEEEEETTTTEEE----EEEECC----SEE--EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-CSCT-----
T ss_pred             ceeeeeecCCCcEe----eEEecC----Ccc--eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc-ccce-----
Confidence            78999999887643    222210    000  000122345577788887776553 2 6666666543 2111     


Q ss_pred             ccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-eeEEecCCC----------Cccceeee
Q 014644          288 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKN----------ENRKPILQ  356 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~----------~~~~~~~~  356 (421)
                      +....               ....+.+++..++.++.++.+++|++..+... ......+..          ....++++
T Consensus       193 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  257 (355)
T d2bbkh_         193 DEFLI---------------NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  257 (355)
T ss_dssp             TSCBC---------------SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             eccee---------------eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence            11111               34567788888899999999999999876322 122222221          22344555


Q ss_pred             cCCcccccccceeeeecccC----------c-ccCC-CCCccccccccccCeEEEEEccCCCe--EEEec-CCceEEEeC
Q 014644          357 AAPRARRSSLSNLTRGLYRQ----------A-HENS-SSGHHELSYNLSSKLLHLAWHPTTNL--IACAN-GNSLFFHYA  421 (421)
Q Consensus       357 ~~~~~~~~~~~~l~~g~~d~----------~-~iw~-~~~~~~~~~~~~~~v~~~~~spd~~~--la~~~-~~~~~i~~~  421 (421)
                      ++  +.     .++....++          . .+|+ ..............+.+++|+|||+.  ++++. ++.|++|++
T Consensus       258 ~d--~~-----~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         258 RA--LD-----RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             TT--TT-----EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CC--CC-----eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            55  22     333322221          1 4452 22222233344566889999999983  34444 577999974

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=2e-13  Score=121.97  Aligned_cols=276  Identities=9%  Similarity=0.011  Sum_probs=156.4

Q ss_pred             EEEEEEcCCCCeEEEEe----------CCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeee
Q 014644           38 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  107 (421)
Q Consensus        38 ~v~~~~~~~~~~l~t~s----------~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (421)
                      .+.|  +|||++|++++          .++.|.+||..+++......... .....+...     .....+.++.+.+..
T Consensus        70 ~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~~~~~~-----~~~~~~s~dg~~~~v  141 (373)
T d2madh_          70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-APRFDVGPY-----SWMNANTPNNADLLF  141 (373)
T ss_pred             cEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCC-cceeEeccC-----CCcEEEEeCCCcEEE
Confidence            6889  79999998875          46789999999987433322111 111100000     001112222332222


Q ss_pred             cccccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEE-EE-cCCcEEEEeCCCCceeeeeeecCCCCCCc
Q 014644          108 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  185 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  185 (421)
                      ........+.+|+....   +..     .+.....++.++|+++.++ +. .|+++.+|+.. ........... ....+
T Consensus       142 ~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~-~~~~~~~~~~~-~~~~~  211 (373)
T d2madh_         142 FQFAAGPAVGLVVQGGS---SDD-----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA-GGAAGAGLVGA-MLTAA  211 (373)
T ss_pred             EEEcCCCceEEeeccCC---eEE-----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC-CceeeEEEeee-ccccC
Confidence            22233345566665544   222     3334567889999988765 45 89999999998 44443332110 01112


Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEE--
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL--  263 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--  263 (421)
                      .......+.+.+++  .++..+.++.+.+|+.........  ..+..+   ................+++++++..++  
T Consensus       212 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  284 (373)
T d2madh_         212 QNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDAL---SGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             ccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--Eeeccc---cCcEEeeeeccCcceeeEEecCCCeEEEe
Confidence            22223444555554  556667889999999887643211  111110   000000001122334566666665544  


Q ss_pred             --------EecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE--EEEeeCCCeEEEEe
Q 014644          264 --------SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--FATGSYSNLLRIFS  332 (421)
Q Consensus       264 --------~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~--l~~~s~dg~i~iwd  332 (421)
                              .... +.+.+||..+ ++.+..+......                ..++|+|||+.  +++++.|+.|++||
T Consensus       285 ~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         285 TSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             cCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCCe----------------eEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence                    3333 7899999986 7777766544332                68999999984  46788999999999


Q ss_pred             cCCCCCceeEEecCCCCccceeee
Q 014644          333 HGVGSAGGITVEAGKNENRKPILQ  356 (421)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~  356 (421)
                      +.++ +....+..+......++..
T Consensus       348 ~~tg-~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         348 AGAG-DQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             CCCC-CEEEEECCCCCCCcEEEEe
Confidence            9998 6677777665555555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.8e-13  Score=120.85  Aligned_cols=225  Identities=9%  Similarity=0.013  Sum_probs=134.1

Q ss_pred             CCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeE-
Q 014644          136 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV-  212 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v-  212 (421)
                      .|.-.+.....+|||++|+..  .+.+|.++|++ ..+..+++.      -.+...+..++|+|++....+++..+..+ 
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~-t~k~~~ii~------iP~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLD-IMKTDKITH------IPNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEE------CTTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECC-CCcEeeEEe------cCCCCCccceEEeccCCEEEEEeccCCccc
Confidence            455566677778999999775  78899999999 566665553      22456688999999983333333333333 


Q ss_pred             -----------------EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--C-----
Q 014644          213 -----------------RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M-----  268 (421)
Q Consensus       213 -----------------~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~-----  268 (421)
                                       ..+|..+....    ..+..              ......+.++|+|+++++++.  .     
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI~v--------------~~~p~~v~~spdGk~a~vt~~nse~~~~i  203 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVA----WQVIV--------------DGNLDNTDADYTGKYATSTCYNSERAVDL  203 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred             ccCcccccccccccceEEeecCccceee----EEEec--------------CCCccceEECCCCCEEEEEecCCCceEEE
Confidence                             33454443321    11111              235677888899888876532  1     


Q ss_pred             -----------------------------------eEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEc
Q 014644          269 -----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS  313 (421)
Q Consensus       269 -----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  313 (421)
                                                         .+.+++... ...+..+.....+                ..+.++
T Consensus       204 d~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgksP----------------hGv~vS  266 (441)
T d1qnia2         204 AGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKNP----------------HGLNTS  266 (441)
T ss_dssp             HHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSSC----------------CCEEEC
T ss_pred             eccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCCc----------------cCceEC
Confidence                                               222222221 2333334333332                589999


Q ss_pred             CCCCEEE-EeeCCCeEEEEecCCCCCceeEEecCCCCccce-------------eeecCCcccccccceeeeecccCc-c
Q 014644          314 GDGLHFA-TGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-------------ILQAAPRARRSSLSNLTRGLYRQA-H  378 (421)
Q Consensus       314 p~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~g~~d~~-~  378 (421)
                      |||++++ ++..+++|.+||+.+.   ...+.++.....++             .|.+.  |     ..+.+..-|.. .
T Consensus       267 PDGkyl~~~~~~~~tvsv~d~~k~---~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~--g-----~~yts~~~ds~v~  336 (441)
T d1qnia2         267 PDGKYFIANGKLSPTVSVIAIDKL---DDLFEDKIELRDTIVAEPELGLGPLHTTFDGR--G-----NAYTTLFIDSQVC  336 (441)
T ss_dssp             TTSCEEEEECTTSSBEEEEEGGGH---HHHTTTSSCGGGGEEECCBCCSCEEEEEECSS--S-----EEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCcCCcEEEEEeehh---hhHhhccCCcceEEEeecccccCcccceecCC--c-----eEEEcccccceEE
Confidence            9999875 5678999999998753   11112222221222             23333  2     35666666766 6


Q ss_pred             cCCCC--------C---ccc------cccccccCeEEEEEccCCCeEEEec
Q 014644          379 ENSSS--------G---HHE------LSYNLSSKLLHLAWHPTTNLIACAN  412 (421)
Q Consensus       379 iw~~~--------~---~~~------~~~~~~~~v~~~~~spd~~~la~~~  412 (421)
                      .|+.+        +   .+.      .+.+|...+.+.+++|||++|++++
T Consensus       337 kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         337 KWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             EeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            67321        1   111      1257888888889999999999995

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=1.9e-11  Score=112.60  Aligned_cols=161  Identities=9%  Similarity=0.033  Sum_probs=102.0

Q ss_pred             EEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccc------
Q 014644           37 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW------  110 (421)
Q Consensus        37 ~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------  110 (421)
                      ..+.|  .+++.++.  ..|+.+.+||+.+++...+.....        +......+.+..++|++.+++..+.      
T Consensus        20 ~~~~W--~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r   87 (470)
T d2bgra1          20 YSLRW--ISDHEYLY--KQENNILVFNAEYGNSSVFLENST--------FDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (470)
T ss_dssp             CCCEE--CSSSEEEE--ESSSCEEEEETTTCCEEEEECTTT--------TTTSSSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             cCCEe--CCCCEEEE--EcCCcEEEEECCCCCEEEEEchhh--------hhhccCccceeEECCCCCEEEEEECCcceee
Confidence            35778  46776654  457899999999988544432111        1111234556667777777665432      


Q ss_pred             -ccccceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCC--CC---
Q 014644          111 -TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--MD---  184 (421)
Q Consensus       111 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~--~~---  184 (421)
                       ...+.+.+|+++++   +. ..+ ..|.+.+....|||||+.||...++.+.+|+.. ++...+........  ..   
T Consensus        88 ~s~~~~~~l~d~~~~---~~-~~l-~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~-~g~~~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          88 HSYTASYDIYDLNKR---QL-ITE-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             SCEEEEEEEEETTTT---EE-CCS-SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTEEESBC
T ss_pred             eccCceEEEEECCCC---cc-ccc-ccCCccccccccccCcceeeEeecccceEEECC-CCceeeeeeccCCCccccccc
Confidence             11236778888876   43 334 678889999999999999999988899999998 44444332100000  00   


Q ss_pred             ------ccCCCeeEEEEecCCCCeEEEEEcCCe-EEEEE
Q 014644          185 ------DLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVD  216 (421)
Q Consensus       185 ------~~~~~v~~~~~~p~~~~~l~s~~~d~~-v~iwd  216 (421)
                            ...+....+.|+||| +.|++...|.+ +..|+
T Consensus       162 d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEE
T ss_pred             ceeeeeeecCCccccEECCCC-CccceeEecCCcCceEE
Confidence                  122334668899999 88888876533 44443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=8.4e-12  Score=111.19  Aligned_cols=167  Identities=8%  Similarity=-0.033  Sum_probs=90.0

Q ss_pred             EEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCc
Q 014644          142 NSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  219 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~  219 (421)
                      ..++|+|||++|+.+  .++.+.+||+. ..+....+..       +...    .+.|.+...++..+.||.+.++++..
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~-~~~~~~~~~~-------~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVP-GASDDQLTKS-------ASCF----HIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEET-TTEEEEEEEC-------SSCC----CCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECC-CCcEeEEeec-------cCcc----eEccCCCceEEEEcCCCCEEEEEecC
Confidence            468999999999876  68999999998 5565555421       1111    12233335667777888888888765


Q ss_pred             ccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCccccccccc
Q 014644          220 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY  299 (421)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      .....    ....       ...+..+...+....+.+++..+.+.. +.++++++.. .....................
T Consensus       195 ~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  261 (368)
T d1mdah_         195 APAAA----GIVG-------AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPA-AGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             SCCCC----EECC-------CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCS-SCCEEECCCCSSCTHHHHTTE
T ss_pred             Cceee----eeee-------cccccccccceeecccccCcEEEEecC-CCEEEEeecC-CceEEEeecccccceeeeeee
Confidence            43210    0000       000112234556677888876665443 6677777754 332221111000000000000


Q ss_pred             CCCcceeeeEEEEcCCCCEEEEeeCC---------CeEEEEecCCC
Q 014644          300 NNDSIFDKFECSVSGDGLHFATGSYS---------NLLRIFSHGVG  336 (421)
Q Consensus       300 ~~~~~~~~~~~~~sp~~~~l~~~s~d---------g~i~iwd~~~~  336 (421)
                      ..+   +...++++|++..++....+         ..|.+||..++
T Consensus       262 ~~~---g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~  304 (368)
T d1mdah_         262 RSA---GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EEC---SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             cCC---CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence            000   01357888888876654322         25888888876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=7.7e-09  Score=91.30  Aligned_cols=285  Identities=8%  Similarity=-0.033  Sum_probs=147.6

Q ss_pred             ccccEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCce-eEEeeecCCCCCcccccccccccceeeccCC--CCcee-eee
Q 014644           32 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAH-GYH  107 (421)
Q Consensus        32 h~~~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~-~~~  107 (421)
                      ....+.-++|  ++++++|.++.. +.+..|.+.... +............+.+++.+..+.++....+  ....+ .+.
T Consensus        38 ~~~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEE--cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence            3445667888  789988877754 568888776432 3222222222333445555444433222111  11111 000


Q ss_pred             cccccccceeEEeeccc-ceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCC
Q 014644          108 LEWTENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD  184 (421)
Q Consensus       108 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~  184 (421)
                      ..  ......+...... ................+.++.|+|||++++++  ....|.+|+....+.....-..   ...
T Consensus       115 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---~~~  189 (365)
T d1jofa_         115 YK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---DAP  189 (365)
T ss_dssp             SS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---ECS
T ss_pred             cC--CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---eec
Confidence            00  0112222222211 00111111113344568899999999988886  4668888887644433221110   112


Q ss_pred             ccCCCeeEEEEecCCCCeEEE-EEcCCeEEEEECCccccccc-chhhhccc-cccCCCcccccccccceeEEEEcCCCCE
Q 014644          185 DLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDH-SARILRDA-AESHGSKSFFTEIIASISDIKFANDGQH  261 (421)
Q Consensus       185 ~~~~~v~~~~~~p~~~~~l~s-~~~d~~v~iwd~~~~~~~~~-~~~~~~~h-~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (421)
                      ......+.++|+|++ ++++. ...+++|.+|++..+..... .......- ...+........+......+.++|||++
T Consensus       190 ~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         190 DPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             STTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCCceEEEEECCCC-ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence            234567999999999 66654 44789999999876542210 00000000 0000011111222345678999999999


Q ss_pred             EEEec--C-----CeEEEEECCCCCcceeEEeeccCc-ccccccccCCCcceeeeEEEEcC-CCCEEEEe-eCCCeEEEE
Q 014644          262 LLSRD--Y-----MNLKLWDIRMDSTPVATFKIHEHL-RPKLCDLYNNDSIFDKFECSVSG-DGLHFATG-SYSNLLRIF  331 (421)
Q Consensus       262 l~~~~--~-----~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp-~~~~l~~~-s~dg~i~iw  331 (421)
                      |+++.  +     ..|..|++...+............ ....           ...++++| +|++|+++ ..++.|.+|
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~-----------p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH-----------SNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT-----------CCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC-----------ccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            98752  1     347778776534332222111100 0000           05799998 79987666 467999999


Q ss_pred             ecCCC
Q 014644          332 SHGVG  336 (421)
Q Consensus       332 d~~~~  336 (421)
                      +++..
T Consensus       338 ~~~~~  342 (365)
T d1jofa_         338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            98654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=5.1e-10  Score=99.57  Aligned_cols=123  Identities=9%  Similarity=0.001  Sum_probs=79.4

Q ss_pred             ceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCC
Q 014644          249 SISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN  326 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg  326 (421)
                      ....+.++|||+++++++ . ++|.+||+.+-.+   .+..+-...  .+-..+.+.-......+|+++|....+...|.
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~---~~~~~~~~~--~~~~~~~~~glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD---LFEDKIELR--DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH---HTTTSSCGG--GGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeehhhh---HhhccCCcc--eEEEeecccccCcccceecCCceEEEcccccc
Confidence            357899999999987653 3 9999999864111   010100000  00000111111225679999998888888999


Q ss_pred             eEEEEecCCC---------CCceeEE-----ecCCCCccceeeecCCcccccccceeeeecccCc-ccCCCC
Q 014644          327 LLRIFSHGVG---------SAGGITV-----EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS  383 (421)
Q Consensus       327 ~i~iwd~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~~~  383 (421)
                      .|..|++...         ......+     .+|...+....++|+  |+     +|+++++-.+ |.+..+
T Consensus       334 ~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd--Gk-----~l~s~~k~s~dr~~~~g  398 (441)
T d1qnia2         334 QVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD--GK-----WLVVLSKFSKDRFLPVG  398 (441)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC--CC-----EEEEEESCCGGGSCCCS
T ss_pred             eEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCC--Cc-----EEEecCccccccCcCCC
Confidence            9999997521         1222333     588888899999999  55     9999988887 777544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.18  E-value=1.6e-10  Score=106.24  Aligned_cols=160  Identities=13%  Similarity=0.074  Sum_probs=106.6

Q ss_pred             EEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc---------CCeE
Q 014644          142 NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFV  212 (421)
Q Consensus       142 ~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---------d~~v  212 (421)
                      ..+.|.++++++. -.|+.+.+||+. +++...++  ...++..|...|.++.|+||+ +.|+.++.         ++.+
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~-t~~~~~~~--~~~~~~~~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAE-YGNSSVFL--ENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETT-TCCEEEEE--CTTTTTTSSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECC-CCCEEEEE--chhhhhhccCccceeEECCCC-CEEEEEECCcceeeeccCceE
Confidence            3578999987654 467789999999 44444443  234667788899999999999 88887753         5678


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcc
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLR  292 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~  292 (421)
                      .+||+.+++..     .+..             +...+..+.|||||++||...++.+++|+... ++..+.........
T Consensus        95 ~l~d~~~~~~~-----~l~~-------------~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~-g~~~~~t~~~~~~~  155 (470)
T d2bgra1          95 DIYDLNKRQLI-----TEER-------------IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRITWTGKEDI  155 (470)
T ss_dssp             EEEETTTTEEC-----CSSC-------------CCTTEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECCSCCBTTT
T ss_pred             EEEECCCCccc-----cccc-------------CCccccccccccCcceeeEeecccceEEECCC-CceeeeeeccCCCc
Confidence            89999987532     2222             36678999999999999998888999999875 55444332211100


Q ss_pred             c--cccc-ccCCCcceeeeEEEEcCCCCEEEEeeCC
Q 014644          293 P--KLCD-LYNNDSIFDKFECSVSGDGLHFATGSYS  325 (421)
Q Consensus       293 ~--~~~~-~~~~~~~~~~~~~~~sp~~~~l~~~s~d  325 (421)
                      .  ..+. .++....-....+.|||||++|+....|
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            0  0000 0000000011467899999999987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=1.4e-08  Score=89.68  Aligned_cols=253  Identities=9%  Similarity=-0.022  Sum_probs=136.2

Q ss_pred             CCcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEE--EEE-cCCeEE
Q 014644          137 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA--YSS-SRGFVR  213 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~--s~~-~d~~v~  213 (421)
                      ....+.-|+++|++++|.++..+.+..|.+...........      .........+.+++++ +.++  ++. ..+.|.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~  110 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS------HPIGGHPRANDADTNT-RAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE------EECCSSGGGGCTTSCC-EEEEEEECSSTTCCEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEee------ecCCCCcEEEEECCCC-CEEEEEEecCCCCEEE
Confidence            44456779999999999988556788888874444433221      1112335667788888 5332  222 245565


Q ss_pred             EEECCcccccccchhhhccc----cccCCCcccccccccceeEEEEcCCCCEEEEecC--CeEEEEECCCCCcceeE--E
Q 014644          214 LVDMRQSALCDHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVAT--F  285 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~~~~~~~--~  285 (421)
                      .+.+.......   ..+...    ...+.. .........+.++.|+|||+++++.+.  ..|.+|+....+.....  .
T Consensus       111 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~  186 (365)
T d1jofa_         111 ANPFYKFAGYG---NVFSVSETGKLEKNVQ-NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             EEEESSSCCEE---EEEEECTTCCEEEEEE-EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             EeEccCCCCcc---eeEeeeecceecCccc-CcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence            55443211000   000000    000000 000011234789999999999988754  78899887653433211  1


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEEee-CCCeEEEEecCCCCCcee-EEec-----------------C
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGI-TVEA-----------------G  346 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s-~dg~i~iwd~~~~~~~~~-~~~~-----------------~  346 (421)
                      ......          .   ..+.++|+|+++++++.. .++.|.+|++........ ....                 +
T Consensus       187 ~~~~~g----------~---gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (365)
T d1jofa_         187 DAPDPG----------D---HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             ECSSTT----------C---CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             eecCCC----------C---ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccc
Confidence            111100          0   116899999999986665 478999999976533211 1110                 0


Q ss_pred             CCCccceeeecCCcccccccceeeeecc--cCc---ccC--C--CCCcccc------ccccccCeEEEEEcc-CCCeEEE
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLY--RQA---HEN--S--SSGHHEL------SYNLSSKLLHLAWHP-TTNLIAC  410 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~--d~~---~iw--~--~~~~~~~------~~~~~~~v~~~~~sp-d~~~la~  410 (421)
                      ......+.++|+  |+     +|+++..  +..   .++  .  ....+..      ..........++++| +|++|++
T Consensus       254 ~~~~~~i~~spd--G~-----~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~v  326 (365)
T d1jofa_         254 LYRADVCALTFS--GK-----YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             SEEEEEEEECTT--SS-----EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred             cCCccceEECCC--CC-----EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEE
Confidence            111235667777  44     5555432  211   122  1  1111111      111234567799998 8998888


Q ss_pred             ec--CCceEEEe
Q 014644          411 AN--GNSLFFHY  420 (421)
Q Consensus       411 ~~--~~~~~i~~  420 (421)
                      +.  ++.|.+|+
T Consensus       327 a~~~s~~v~v~~  338 (365)
T d1jofa_         327 TDDQEGWLEIYR  338 (365)
T ss_dssp             ECSSSCEEEEEE
T ss_pred             EeCCCCeEEEEE
Confidence            86  57799885

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=5.4e-08  Score=83.38  Aligned_cols=204  Identities=14%  Similarity=0.118  Sum_probs=126.2

Q ss_pred             cEEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeeccccccc
Q 014644           35 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  114 (421)
Q Consensus        35 ~V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  114 (421)
                      .+..+++  .++|+++++...+++|..|+..... ..+                                          
T Consensus        29 ~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~g~~-~~~------------------------------------------   63 (302)
T d2p4oa1          29 FLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIH------------------------------------------   63 (302)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEE------------------------------------------
T ss_pred             CcCCEEE--CCCCCEEEEeCCCCEEEEEeCCCCE-EEE------------------------------------------
Confidence            4667888  7999999999989988888754321 111                                          


Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  193 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  193 (421)
                                          ......+.+++|.++|+++++. .++.+..|+..........+.    . .........+
T Consensus        64 --------------------~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~n~i  118 (302)
T d2p4oa1          64 --------------------ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL----T-LPDAIFLNGI  118 (302)
T ss_dssp             --------------------EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE----E-CTTCSCEEEE
T ss_pred             --------------------EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc----c-cCCcccccee
Confidence                                1233468899999999999988 888888887653332222210    0 1234557889


Q ss_pred             EEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE-ecC-CeEE
Q 014644          194 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLK  271 (421)
Q Consensus       194 ~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~-~~i~  271 (421)
                      ++.+++ +++++.+.++.+..+|...+...     .+..  ..................+.++  +..+.. .+. +.|+
T Consensus       119 ~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         119 TPLSDT-QYLTADSYRGAIWLIDVVQPSGS-----IWLE--HPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLL  188 (302)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTTTEEE-----EEEE--CGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEccCC-CEEeeccccccceeeeccCCcce-----eEec--CCccceeeccCccccccccccc--CCceeeecCCCCeEE
Confidence            999998 88888888888988888765422     1100  0000000011112345566665  344443 344 8888


Q ss_pred             EEECCCCCcce--eEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecC
Q 014644          272 LWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG  334 (421)
Q Consensus       272 i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~  334 (421)
                      .++....+...  ..+.....+                .+++++++|++.++...++.|..++..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~p----------------dgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNI----------------DDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCC----------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             eccccccccccccccccCCCCC----------------cceEECCCCCEEEEEcCCCcEEEECCC
Confidence            88876432221  111112211                479999999988888888888888654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.08  E-value=3.2e-09  Score=94.06  Aligned_cols=134  Identities=10%  Similarity=-0.014  Sum_probs=78.0

Q ss_pred             cCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcc-cccccccceeEEEEcCCCCEEEE
Q 014644          186 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-FFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       186 ~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      +...+..+.+.+++ ..+.  ..++.+.++++..+.....  .....    ..... ...........++++|++..++.
T Consensus       210 ~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         210 QNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMK--AAIDG----NESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             SCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEE--CCCCS----SCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEE--eeccc----ccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence            44445566777776 4444  3455666777665432210  00000    00000 00001223456889999887765


Q ss_pred             ec---------C-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE--EEEeeCCCeEEEEe
Q 014644          265 RD---------Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH--FATGSYSNLLRIFS  332 (421)
Q Consensus       265 ~~---------~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~--l~~~s~dg~i~iwd  332 (421)
                      ..         . ..|.+||..+ ++.+..+......                .+++|+|||+.  ++++..++.|++||
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~~----------------~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EecCCCceeecCCceEEEEECCC-CcEeEEecCCCce----------------eEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            31         1 3689999987 7777666544322                58999999973  45667799999999


Q ss_pred             cCCCCCceeEEecC
Q 014644          333 HGVGSAGGITVEAG  346 (421)
Q Consensus       333 ~~~~~~~~~~~~~~  346 (421)
                      ..++ +....+...
T Consensus       344 ~~tg-k~~~~i~~g  356 (368)
T d1mdah_         344 AASD-QDQSSVELD  356 (368)
T ss_dssp             SSSC-EEEEECCCC
T ss_pred             CCCC-CEEEEEECC
Confidence            9988 445555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.6e-08  Score=82.12  Aligned_cols=180  Identities=16%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             CCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe--
Q 014644          136 AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF--  211 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~--  211 (421)
                      .+........|+|+|+.++..  .++...++...........       ............+++++...+++...++.  
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------CCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeeccccccccee-------eeeccccccccccccccccceecccccCCce
Confidence            456677888999999999874  4444433333212221111       12334445566788887344444445554  


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeecc
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHE  289 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~  289 (421)
                      |.+.++..+...    ...              ..........|+|+++.++..+ . +...+|............. ..
T Consensus       153 i~~~~~~~~~~~----~~~--------------~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~  213 (269)
T d2hqsa1         153 VYKVNINGGAPQ----RIT--------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST  213 (269)
T ss_dssp             EEEEETTSSCCE----ECC--------------CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS
T ss_pred             Eeeeecccccce----eee--------------cccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cC
Confidence            444555543211    111              1145667889999999988753 3 5555554443233333332 22


Q ss_pred             CcccccccccCCCcceeeeEEEEcCCCCEEEEeeC---CCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          290 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      ...               ....|+|||++|+..+.   ...|+++++..+  ....+......+...+|+|-
T Consensus       214 ~~~---------------~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~--~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         214 FLD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SSC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCC
T ss_pred             ccc---------------cceEECCCCCEEEEEEcCCCCcEEEEEECCCC--CEEEEeCCCCcEEeEEeCCC
Confidence            222               57899999999886554   346889998755  34455555666667778774

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3.8e-08  Score=82.65  Aligned_cols=218  Identities=13%  Similarity=0.097  Sum_probs=122.3

Q ss_pred             CCCcceEEEeecCCCCEEEEE--cCC--cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCC
Q 014644          136 AHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG  210 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~  210 (421)
                      .+...+.+.+|||||+.||..  ..+  .+.+.+.. ..... .+       ..+........|+|+| ..++... .++
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~-~~~~~-~~-------~~~~~~~~~~~~spdg-~~i~~~~~~~~  105 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVR-QV-------ASFPRHNGAPAFSPDG-SKLAFALSKTG  105 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEE-EE-------ECCSSCEEEEEECTTS-SEEEEEECTTS
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc-cCcee-EE-------eeeecccccceecCCC-CeeeEeeecCC
Confidence            445668899999999999974  333  35555665 22222 22       3456778889999999 6666555 333


Q ss_pred             eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-C--eEEEEECCCCCcceeEEe
Q 014644          211 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M--NLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       211 ~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~--~i~i~d~~~~~~~~~~~~  286 (421)
                      ...++........  .......              ........++++++.++... . +  .|.+.++..  .......
T Consensus       106 ~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~~  167 (269)
T d2hqsa1         106 SLNLYVMDLASGQ--IRQVTDG--------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRIT  167 (269)
T ss_dssp             SCEEEEEETTTCC--EEECCCC--------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECC
T ss_pred             ccceeeccccccc--ceeeeec--------------cccccccccccccccceecccccCCceEeeeeccc--ccceeee
Confidence            3333322211100  0011111              23445566777777665432 2 3  556666653  2222222


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC-CeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccc
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS  365 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (421)
                      .....               .....|+|+++.++..+.+ +...+|........ ..+..+........|+|+  |+   
T Consensus       168 ~~~~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPD--G~---  226 (269)
T d2hqsa1         168 WEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPN--GT---  226 (269)
T ss_dssp             CSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTT--SS---
T ss_pred             ccccc---------------ccccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCccccceEECCC--CC---
Confidence            22221               1567999999998876654 44444444433222 344445566677889999  55   


Q ss_pred             cceeeeecccC-c-ccC---CCCCccccccccccCeEEEEEccC
Q 014644          366 LSNLTRGLYRQ-A-HEN---SSSGHHELSYNLSSKLLHLAWHPT  404 (421)
Q Consensus       366 ~~~l~~g~~d~-~-~iw---~~~~~~~~~~~~~~~v~~~~~spd  404 (421)
                        .|+..+..+ . .||   ..+.....+......+...+|||-
T Consensus       227 --~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         227 --MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             --EEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             --EEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence              554444333 3 555   333444455555677888999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=7.5e-07  Score=75.05  Aligned_cols=247  Identities=10%  Similarity=0.083  Sum_probs=147.9

Q ss_pred             EEEEEEEEcCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccc
Q 014644           36 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  115 (421)
Q Consensus        36 V~~v~~~~~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  115 (421)
                      -..|++  +++++++++-...+.|++||.+..-+..+........   ....+ .. + +... .....+..... ....
T Consensus        25 P~gvav--d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~---~~~~p-~~-~-~~~~-~~~~~~~~~~~-~~~~   94 (279)
T d1q7fa_          25 PSGVAV--NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS---QLLYP-NR-V-AVVR-NSGDIIVTERS-PTHQ   94 (279)
T ss_dssp             EEEEEE--CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTT---CBSSE-EE-E-EEET-TTTEEEEEECG-GGCE
T ss_pred             ccEEEE--cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcc---ccccc-cc-c-cccc-cccccceeccC-Cccc
Confidence            478888  7889988888888999999976433333321111100   00000 00 0 0001 11111111000 0112


Q ss_pred             eeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEE
Q 014644          116 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  194 (421)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  194 (421)
                      +..++..    +.....+..........+++.+++.++++. ..+.+.+++.+  +..+..+..     ..+......++
T Consensus        95 i~~~~~~----g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~-----~~~~~~~~~i~  163 (279)
T d1q7fa_          95 IQIYNQY----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC-----SKHLEFPNGVV  163 (279)
T ss_dssp             EEEECTT----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC-----TTTCSSEEEEE
T ss_pred             ccccccc----ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC--Cceeecccc-----cccccccceee
Confidence            2222221    133444423455667889999999988887 77788888876  455554421     34556778899


Q ss_pred             EecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEE
Q 014644          195 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL  272 (421)
Q Consensus       195 ~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i  272 (421)
                      +.+++ +++++....+.|++||..... .    ..+..           .+.......|++.++|+.+++-. . +.|.+
T Consensus       164 ~d~~g-~i~v~d~~~~~V~~~d~~G~~-~----~~~g~-----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         164 VNDKQ-EIFISDNRAHCVKVFNYEGQY-L----RQIGG-----------EGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             ECSSS-EEEEEEGGGTEEEEEETTCCE-E----EEESC-----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             eccce-eEEeeeccccceeeeecCCce-e----eeecc-----------cccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            99998 888888888999999975422 1    22211           11134568899999999777753 3 57999


Q ss_pred             EECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCC
Q 014644          273 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       273 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~  336 (421)
                      |+..  ++.+..+.......             ....+++.|+|+++ +.+.++.|++|...+.
T Consensus       227 f~~~--G~~~~~~~~~~~~~-------------~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         227 FTQD--GQLISALESKVKHA-------------QCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ECTT--SCEEEEEEESSCCS-------------CEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             ECCC--CCEEEEEeCCCCCC-------------CEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence            9853  77777765433211             11689999999755 4567899999998765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1.9e-07  Score=77.96  Aligned_cols=229  Identities=6%  Similarity=-0.038  Sum_probs=132.1

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .....+++.++|..+++.  ..+.+..++.........       ...+ ......+++++++ +++++....+.+++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeee
Confidence            446899999999977765  567777777663222221       1122 2345788999998 7777666666666655


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEe--eccCccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK--IHEHLRP  293 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~--~~~~~~~  293 (421)
                      -......    .....              .....++++.++|+++++-.. ..+..++...  .......  +...+  
T Consensus        85 ~~~~~~~----~~~~~--------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~p--  142 (260)
T d1rwia_          85 GSNNQTV----LPFDG--------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDP--  142 (260)
T ss_dssp             TCSCCEE----CCCCS--------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCCSCCSC--
T ss_pred             eccceee----eeeee--------------eeecccccccccceeEeecccccccccccccc--ceeeeeeecccCCc--
Confidence            4433211    11111              245689999999988776544 6677777653  2222221  11111  


Q ss_pred             ccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeecCCcccccccceeeeec
Q 014644          294 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL  373 (421)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  373 (421)
                                    .+++++|+++.+++...++.|..++.... ...............+++.++  +.     ++++..
T Consensus       143 --------------~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~--g~-----l~vsd~  200 (260)
T d1rwia_         143 --------------DGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEA--GT-----VYVTEH  200 (260)
T ss_dssp             --------------CEEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTT--CC-----EEEEET
T ss_pred             --------------ceeeecCCCCEeeeccccccccccccccc-eeeeeeccccCCCccceeeee--ee-----eeeeec
Confidence                          58999999998888888899999997754 222221223333445666554  33     444444


Q ss_pred             ccCc--ccCCCCCccccc-cccccCeEEEEEccCCCeEEEec-CCceEEEe
Q 014644          374 YRQA--HENSSSGHHELS-YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY  420 (421)
Q Consensus       374 ~d~~--~iw~~~~~~~~~-~~~~~~v~~~~~spd~~~la~~~-~~~~~i~~  420 (421)
                      ..+.  ++...+...... ...-.....++++++|+++++-. .++|+.++
T Consensus       201 ~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         201 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            4443  333222221111 11224567999999998877655 56676554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.2e-07  Score=80.52  Aligned_cols=254  Identities=9%  Similarity=0.014  Sum_probs=122.8

Q ss_pred             CcceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeee-cCCC-CCCccC---------CCeeEEEEecCCCCeEEEE
Q 014644          138 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-MKPS-NMDDLT---------EVITSAEFHPIYCNLLAYS  206 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~-~~~~-~~~~~~---------~~v~~~~~~p~~~~~l~s~  206 (421)
                      ...+....|||||+.||-..++.|.+.+.. .+...++.. .... .+.+..         ..-.++-||||| +.||..
T Consensus       113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~  190 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYA  190 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEE
T ss_pred             ccccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEE
Confidence            344666889999999998878889988887 444444331 1100 001111         112467799999 888877


Q ss_pred             E-cCCeEEEEECCcc--cc--cccc--------------hhhhccccccCCC-----cccccccccceeEEEEcCCCCEE
Q 014644          207 S-SRGFVRLVDMRQS--AL--CDHS--------------ARILRDAAESHGS-----KSFFTEIIASISDIKFANDGQHL  262 (421)
Q Consensus       207 ~-~d~~v~iwd~~~~--~~--~~~~--------------~~~~~~h~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l  262 (421)
                      . .+..|..+.+...  ..  ....              +.++.. ......     ..........+..+.|+|+++++
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~-~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~  269 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA  269 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-CCCcEEEEEeccCcCccccceeeeeEEcCCCeEE
Confidence            6 3444555544321  00  0000              000000 000000     00011223357789999999877


Q ss_pred             EEec----C-CeEEEEECCCCCcceeEEeecc-CcccccccccCCCcceeeeEEEEcCCCCEEEE--ee-CCC--eEEEE
Q 014644          263 LSRD----Y-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GS-YSN--LLRIF  331 (421)
Q Consensus       263 ~~~~----~-~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~--~s-~dg--~i~iw  331 (421)
                      +...    . ..+.++|..+ ++....+.... ..+...           .....|+|+|+.++.  .+ .+|  .++..
T Consensus       270 ~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~~~-----------~~~p~~~~dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         270 VTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQ-----------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             EEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCC-----------CCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred             EEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEecc-----------CCceeEccCCCeeEEEEeeeecccCceEEE
Confidence            7531    2 4688899886 66554443322 111000           024689999885432  22 232  34444


Q ss_pred             ecC-----CCCCceeEEecCCCCccce-eeecCCcccccccceeeeecccC--c-ccC--C-CCCc----cccccccccC
Q 014644          332 SHG-----VGSAGGITVEAGKNENRKP-ILQAAPRARRSSLSNLTRGLYRQ--A-HEN--S-SSGH----HELSYNLSSK  395 (421)
Q Consensus       332 d~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d~--~-~iw--~-~~~~----~~~~~~~~~~  395 (421)
                      .+.     ..+.....+....-.|..+ .+...  +.    ....++..+.  . .+|  . .+..    +.........
T Consensus       338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~--~~----~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~  411 (465)
T d1xfda1         338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK--GN----KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT  411 (465)
T ss_dssp             EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT--TT----EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC
T ss_pred             EeccccccCCCceeEEeccCCceEEEEEEEcCC--CC----EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCC
Confidence            332     1112223333333334343 34433  21    1222332222  2 465  1 1111    1111223345


Q ss_pred             eEEEEEccCCCeEEEec
Q 014644          396 LLHLAWHPTTNLIACAN  412 (421)
Q Consensus       396 v~~~~~spd~~~la~~~  412 (421)
                      ..++.|||++++++..+
T Consensus       412 ~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         412 YFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             CCEEEECTTSSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            67899999999988655

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=2e-06  Score=72.33  Aligned_cols=237  Identities=10%  Similarity=0.084  Sum_probs=143.8

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEEEEEC
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDM  217 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~iwd~  217 (421)
                      ....++++++++++++- ..+.|++||.+  +..+..+... ..-.+.......+++.++....+++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEeccc-CCCcccccccccccccccccccceeccCCccccccccc
Confidence            46899999999988887 88899999976  4444444211 00111222345566666642444433 35567777775


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccc
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC  296 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      .. ...    ..+..            ........+++.++|.++++... +.+.+++..  ++.+..+.......    
T Consensus       101 ~g-~~~----~~~~~------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~----  157 (279)
T d1q7fa_         101 YG-QFV----RKFGA------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLE----  157 (279)
T ss_dssp             TS-CEE----EEECT------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCS----
T ss_pred             cc-cce----eecCC------------CcccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccccccccc----
Confidence            43 221    11111            01345678999999998887765 778888864  66666664333221    


Q ss_pred             cccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEe--cCCCCccceeeecCCcccccccceeeeec-
Q 014644          297 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGL-  373 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-  373 (421)
                               ....+++.+++..+++....+.|++||...  .....+.  +.......+++.++  ++     .+++-. 
T Consensus       158 ---------~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~--G~-----i~Vad~~  219 (279)
T d1q7fa_         158 ---------FPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSN--GE-----ILIADNH  219 (279)
T ss_dssp             ---------SEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTT--CC-----EEEEECS
T ss_pred             ---------ccceeeeccceeEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccC--Ce-----EEEEECC
Confidence                     115788999999888888899999999653  3333332  23333455666665  33     444433 


Q ss_pred             ccCc-ccCCCCCc-ccccc--ccccCeEEEEEccCCCeEEEecCCceEEEe
Q 014644          374 YRQA-HENSSSGH-HELSY--NLSSKLLHLAWHPTTNLIACANGNSLFFHY  420 (421)
Q Consensus       374 ~d~~-~iw~~~~~-~~~~~--~~~~~v~~~~~spd~~~la~~~~~~~~i~~  420 (421)
                      .+.. .+++.++. +....  ........+++.|||.++++..++++++|.
T Consensus       220 ~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         220 NNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYR  270 (279)
T ss_dssp             SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence            3333 56644333 22221  112357899999999877766677788884

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.78  E-value=2.3e-05  Score=67.05  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             cceEEEeecCCCCEEEEE-cC--CcEEEEeCCCCc-eeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc------
Q 014644          139 FNINSISNNSDCETFVSA-DD--LRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------  208 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d--~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------  208 (421)
                      .....+++.+||+++++. .+  ....++.+.... .......    . ..-......+++.|+| ++.++...      
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~----~-~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~  155 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE----D-LSTAYCIDDMVFDSKG-GFYFTDFRGYSTNP  155 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC----S-SSSCCCEEEEEECTTS-CEEEEECCCBTTBC
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc----C-CCcccCCcceeEEecc-ceeecccccccccC
Confidence            356789999999988875 32  333344333222 2222221    0 1112346788999999 76555322      


Q ss_pred             CCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEe
Q 014644          209 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFK  286 (421)
Q Consensus       209 d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~  286 (421)
                      .+.+..++...+...    .....              -...+.++|+||++.|..+ +. +.|+.|++...+.......
T Consensus       156 ~g~v~~~~~dg~~~~----~~~~~--------------~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~  217 (319)
T d2dg1a1         156 LGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG  217 (319)
T ss_dssp             CEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred             cceeEEEecccceeE----EEeec--------------cceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc
Confidence            123444443322111    11111              2346789999999877655 44 8999999875444333221


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                      ......        .......-.+++.++|++.++....+.|.++|-
T Consensus       218 ~~~~~~--------~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         218 ATIPYY--------FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEEE--------CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceeeec--------cCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            110000        000000147899999998888888999999994

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.75  E-value=2e-06  Score=73.25  Aligned_cols=187  Identities=12%  Similarity=0.054  Sum_probs=110.2

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECC
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  218 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~  218 (421)
                      .+..++++|||+++++. .+++|..|+..  +.....        ......+.+++|+|+| +++++...++.+..++..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~~~--------~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQIH--------ATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE--------EECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEEEE--------EcCCCCcceEEEcCCC-CeEEEecCCceEEEEEec
Confidence            57899999999999998 89999888876  332222        2344678999999999 888888888888888765


Q ss_pred             cccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccccc
Q 014644          219 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      .......  .....            ......+.+++.++|+++++... +.+..+|... +.. ..+.........   
T Consensus        98 ~~~~~~~--~~~~~------------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~~---  158 (302)
T d2p4oa1          98 KSDGTVE--TLLTL------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSG-SIWLEHPMLARS---  158 (302)
T ss_dssp             CTTSCEE--EEEEC------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEE-EEEEECGGGSCS---
T ss_pred             cccccee--ecccc------------CCccccceeEEccCCCEEeeccccccceeeeccC-Ccc-eeEecCCcccee---
Confidence            4321110  11000            01345789999999988887665 8888888764 332 222111110000   


Q ss_pred             ccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc-eeEEecCCCCccceeeecC
Q 014644          298 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENRKPILQAA  358 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~  358 (421)
                       ...........+.++. +.++++.+..+.|+.+++...... .............+++.++
T Consensus       159 -~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d  218 (302)
T d2p4oa1         159 -NSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE  218 (302)
T ss_dssp             -STTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred             -eccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCC
Confidence             0001111123555543 334556667889998888764322 1111112223345666655

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=5.1e-06  Score=71.02  Aligned_cols=160  Identities=9%  Similarity=0.060  Sum_probs=97.7

Q ss_pred             eEEEeecCCCCEEEEE-c---------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC----
Q 014644          141 INSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----  200 (421)
Q Consensus       141 v~~l~~~~~~~~l~s~-~---------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----  200 (421)
                      .+.+++.++|.+.++- .               .+.|..++.+  ++.....        ........++|+|++.    
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~~~--------~~~~~pNGi~~~~d~d~~~~  188 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQVD--------TAFQFPNGIAVRHMNDGRPY  188 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEEEE--------EEESSEEEEEEEECTTSCEE
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--CceeEee--------CCcceeeeeEECCCCCccee
Confidence            5789999999988873 2               1234444433  3333222        1223346889999862    


Q ss_pred             CeEEEEEcCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCC
Q 014644          201 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS  279 (421)
Q Consensus       201 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~  279 (421)
                      .++++-+..+.|..||+......... +.+..   .+      .........+++..+|++.++... +.|.+||.+. +
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~~-~~~~~---~~------~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~-g  257 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIENK-KVWGH---IP------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-G  257 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEE-EEEEE---CC------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-B
T ss_pred             EEEEEeecccceEEeeccCcccccee-eEEEE---cc------ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC-C
Confidence            14444457788988887643221100 11111   00      001234568999999998777654 8999999875 6


Q ss_pred             cceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE-EEeeCCCeEEEEecCCC
Q 014644          280 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVG  336 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l-~~~s~dg~i~iwd~~~~  336 (421)
                      +....+..+....               .+++|.|+++.| ++.+.+|.|+..++...
T Consensus       258 ~~~~~i~~p~~~~---------------t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         258 QPKMRIRCPFEKP---------------SNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCSEEEECSSSCE---------------EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEEEECCCCCE---------------EEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            6666665543322               689999998755 55667888988887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=8.8e-06  Score=69.48  Aligned_cols=240  Identities=10%  Similarity=0.007  Sum_probs=129.2

Q ss_pred             ceEEEeecCCCCEEEEE-c-------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCe
Q 014644          140 NINSISNNSDCETFVSA-D-------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  211 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~-------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~  211 (421)
                      ....++|.++|+++++. .       +++|..||..+ +...... ..  ...........+.|.+++ +.++++.....
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~-~~~~~~~-~~--~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~   93 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVIC-KP--EVNGYGGIPAGCQCDRDA-NQLFVADMRLG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEE-CC--EETTEECCEEEEEECSSS-SEEEEEETTTE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC-CcEEEEE-CC--ccccCCCcceeEEEeCCC-CEEEEEECCCe
Confidence            45678999999988874 2       46788888873 3222111 00  011122345789999999 88888887778


Q ss_pred             EEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCC--------------eEEEEECCC
Q 014644          212 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM--------------NLKLWDIRM  277 (421)
Q Consensus       212 v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--------------~i~i~d~~~  277 (421)
                      |..+|...+...     ........  .      .-...+.+++.++|.+.++-..+              .-++|-+..
T Consensus        94 i~~~~~~g~~~~-----~~~~~~~g--~------~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          94 LLVVQTDGTFEE-----IAKKDSEG--R------RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             EEEEETTSCEEE-----CCSBCTTS--C------BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             EEEEeCCCcEEE-----EEeccccc--c------ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee
Confidence            888887654321     11110000  0      01235789999999888763211              113343333


Q ss_pred             CCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-----EEEEeeCCCeEEEEecCCCCCcee--EE---ecC-
Q 014644          278 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-----HFATGSYSNLLRIFSHGVGSAGGI--TV---EAG-  346 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~l~~~s~dg~i~iwd~~~~~~~~~--~~---~~~-  346 (421)
                      .++.......-..+                ..++|+|++.     +.++-+..+.|+.|++........  .+   .+. 
T Consensus       161 dg~~~~~~~~~~~p----------------NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         161 DGQMIQVDTAFQFP----------------NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TSCEEEEEEEESSE----------------EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cCceeEeeCCccee----------------eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence            34433333222221                5789998764     444556788999998765422211  11   111 


Q ss_pred             CCCccceeeecCCcccccccceeeeecccCc-ccCC-CCCccc-cccccccCeEEEEEccCCCeEEEec--CCceEEEe
Q 014644          347 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHE-LSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY  420 (421)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~d~~-~iw~-~~~~~~-~~~~~~~~v~~~~~spd~~~la~~~--~~~~~i~~  420 (421)
                      ......+++..+  |+     +.++....+. ..++ .++... ........+++++|.||++.|.+..  .+.|+-++
T Consensus       225 ~~~pdGiavD~~--Gn-----lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         225 EGGADGMDFDED--NN-----LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             SCEEEEEEEBTT--CC-----EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cccceeeEEecC--Cc-----EEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            111123444433  33     3343333333 5553 323332 2333346788999999998655443  45566554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=1.2e-05  Score=66.72  Aligned_cols=154  Identities=7%  Similarity=-0.005  Sum_probs=99.2

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  216 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd  216 (421)
                      .....++++.++++++++- ....+..++... . .....     . ........+++++|++ +++++...++.|..+|
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~-~-~~~~~-----~-~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d  167 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-K-TQTVL-----P-FTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLE  167 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC-S-SCEEC-----C-CCSCCSCCEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred             eeecccccccccceeEeecccccccccccccc-c-eeeee-----e-ecccCCcceeeecCCC-CEeeeccccccccccc
Confidence            3557899999999988876 677777777762 2 22211     0 1122345789999998 8888878888999999


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCccccc
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      .......     .+..            ..-.....+++.++|.++++... +.|..++...  .....+....-.    
T Consensus       168 ~~~~~~~-----~~~~------------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~~~~----  224 (260)
T d1rwia_         168 AESNNQV-----VLPF------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTGLN----  224 (260)
T ss_dssp             TTTCCEE-----ECCC------------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCCSCC----
T ss_pred             cccceee-----eeec------------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccCCCC----
Confidence            7754321     1110            01235688999999988877765 7888887653  322222111100    


Q ss_pred             ccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEec
Q 014644          296 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH  333 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~  333 (421)
                                ....++++++|.++++-..++.|+..+.
T Consensus       225 ----------~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         225 ----------TPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ----------CEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ----------CeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                      1158999999987777666777765543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=2.3e-06  Score=71.69  Aligned_cols=100  Identities=18%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             eecCC--CCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc-CC-----eEEEEE
Q 014644          145 SNNSD--CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-----FVRLVD  216 (421)
Q Consensus       145 ~~~~~--~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d~-----~v~iwd  216 (421)
                      ..+||  |+.++-..++.|.+.|+. +++..++        ..+.+.+...+||||| +.||.... ++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~-~g~~~~L--------t~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLK-SGSTRKI--------VSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETT-TCCEEEE--------ECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECC-CCCEEEE--------ecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEE
Confidence            45788  999887766678888998 5554433        3455678899999999 77776542 22     466777


Q ss_pred             CCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe
Q 014644          217 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  265 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (421)
                      ...+...    ++... ..      .............|+|||+.|+..
T Consensus        75 ~~~g~~~----~lt~~-~~------~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          75 GENGEIK----RITYF-SG------KSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             TTTTEEE----ECCCC-CE------EEETTEECSEEEEECTTCCEEEEE
T ss_pred             ecCCceE----Eeeec-CC------CccCccccccccccCCCCCEEEEE
Confidence            7666432    11110 00      000112345678999999998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=1.8e-05  Score=67.65  Aligned_cols=158  Identities=12%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             CcceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----CeE
Q 014644          138 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFV  212 (421)
Q Consensus       138 ~~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----~~v  212 (421)
                      ...+..++|.++|+++++- ..+.|..|+.+ ++.....+       .........++++++| +++++...+    +.+
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~-g~~~~~~~-------~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-TKEIKRPF-------VSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEE-------ECSSSSEEEEEECTTS-CEEEEECTTSSSCCEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECC-CCeEEEEE-------eCCCCCeeEEEECCCC-CEEEEecCCCccceeE
Confidence            3446789999999988887 89999999987 34333322       2233457899999999 777765432    334


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-------CeEEEEECCCCCcceeEE
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-------MNLKLWDIRMDSTPVATF  285 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~~i~i~d~~~~~~~~~~~  285 (421)
                      ...+.......    .....           .......+.+++.++|++.++...       +.+..++..  +..+..+
T Consensus       110 ~~~~~~~~~~~----~~~~~-----------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~  172 (319)
T d2dg1a1         110 FAATENGDNLQ----DIIED-----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPI  172 (319)
T ss_dssp             EEECTTSCSCE----EEECS-----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEE
T ss_pred             EEEcCCCceee----eeccC-----------CCcccCCcceeEEeccceeecccccccccCcceeEEEecc--cceeEEE
Confidence            44444443221    11110           000235678999999997776421       335555543  4444333


Q ss_pred             eeccCcccccccccCCCcceeeeEEEEcCCCCEEEE-eeCCCeEEEEecCCC
Q 014644          286 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVG  336 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-~s~dg~i~iwd~~~~  336 (421)
                      ...-...               ..++|+|+++.|+. -+..+.|+.|++...
T Consensus       173 ~~~~~~p---------------nGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         173 IQNISVA---------------NGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             EEEESSE---------------EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eecccee---------------eeeeeccccceEEEecccCCceEEEEEcCC
Confidence            2211111               58999999987654 456789999998754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.1e-06  Score=76.61  Aligned_cols=169  Identities=16%  Similarity=0.130  Sum_probs=99.6

Q ss_pred             EeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE---------cCCeEEE
Q 014644          144 ISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---------SRGFVRL  214 (421)
Q Consensus       144 l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---------~d~~v~i  214 (421)
                      ..|.+++.++....+|.|.+||+.++. ...++..  .++  ....+....|+||+ +.++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~-~~~l~~~--~~~--~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNT-STVLIEG--KKI--ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCC-CEEEECT--TTT--TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCC-EEEEEcC--ccc--cccccceeEECCCC-CeEEEEEcccceeEeeccccEEE
Confidence            468888877655578899999998433 3323321  122  22356778899999 7776653         3567889


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEe-eccCccc
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHEHLRP  293 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~~~  293 (421)
                      +|+.++...    .+...           ......+....|||||+.||-..++.|.+.+... +...+... +....+.
T Consensus        96 ~d~~~~~~~----~l~~~-----------~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~  159 (465)
T d1xfda1          96 SKIPHGDPQ----SLDPP-----------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIY  159 (465)
T ss_dssp             EESSSCCCE----ECCCT-----------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEE
T ss_pred             EEccCCcee----eccCc-----------cCCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceee
Confidence            999887532    11111           1113456678999999999988778899998865 44443332 1111110


Q ss_pred             -cccc-ccCCCcceeeeEEEEcCCCCEEEEeeC-CCeEEEEecC
Q 014644          294 -KLCD-LYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG  334 (421)
Q Consensus       294 -~~~~-~~~~~~~~~~~~~~~sp~~~~l~~~s~-dg~i~iwd~~  334 (421)
                       .... .++.+..-.-..+-|||||++||.... +..+..+.+.
T Consensus       160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             ccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence             0000 011110000146789999999998764 4445555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.32  E-value=2.8e-05  Score=64.74  Aligned_cols=69  Identities=16%  Similarity=0.083  Sum_probs=39.9

Q ss_pred             CCCcceEEEeecCCCCEEEEE--cCC-----cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE
Q 014644          136 AHDFNINSISNNSDCETFVSA--DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  207 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~--~d~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  207 (421)
                      .+.+.+...+|||||+.||..  .++     .|.+++.. +++..++.... ..............|+|++ +.|+...
T Consensus        38 ~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~-~g~~~~lt~~~-~~~~~~~~~~~~~~~spdg-~~l~~~~  113 (281)
T d1k32a2          38 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEIKRITYFS-GKSTGRRMFTDVAGFDPDG-NLIISTD  113 (281)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEEEECCCCC-EEEETTEECSEEEEECTTC-CEEEEEC
T ss_pred             cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec-CCceEEeeecC-CCccCccccccccccCCCC-CEEEEEE
Confidence            344567788999999999863  222     36666666 44433321100 0001112345678899999 7777643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.24  E-value=0.00049  Score=57.69  Aligned_cols=148  Identities=9%  Similarity=0.025  Sum_probs=92.3

Q ss_pred             cceEEEeecCCCCEEEEE-c----CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEE
Q 014644          139 FNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  213 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~  213 (421)
                      ..++.+.+.|+|++.++. .    .+.-.+|.+. .++.....        ..-.....++|++++..++++-+..+.|.
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~--------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF--------ADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE--------EEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEe--------eccCCcceeeecCCCceEEEeecccceee
Confidence            457888899999988875 3    2345566665 34333322        12234578999999833455556778899


Q ss_pred             EEECCcccccc-cchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCc
Q 014644          214 LVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       214 iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      .|++....... .....+..          +.+.......+++..+|.+.++.-. +.|..||..  ++.+..+..+...
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~----------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~  241 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFID----------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ  241 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEE----------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB
T ss_pred             EeeecccccccccceEEEec----------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCc
Confidence            88875422110 00011100          1122456788999999987777644 889999964  8888888766543


Q ss_pred             ccccccccCCCcceeeeEEEEc-CCCCEEEEe
Q 014644          292 RPKLCDLYNNDSIFDKFECSVS-GDGLHFATG  322 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~s-p~~~~l~~~  322 (421)
                      +               ++++|- ||.+.|+..
T Consensus       242 ~---------------T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         242 T---------------TCPAFIGPDASRLLVT  258 (295)
T ss_dssp             E---------------EEEEEESTTSCEEEEE
T ss_pred             e---------------EEEEEeCCCCCEEEEE
Confidence            3               789996 676666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.0012  Score=55.20  Aligned_cols=181  Identities=13%  Similarity=0.131  Sum_probs=107.7

Q ss_pred             cceEEEeecCCCCEEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC----CeEEE
Q 014644          139 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRL  214 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----~~v~i  214 (421)
                      ..+.++++.++|.+++++.+ .+.++|.. +++........   -......+..+.+.|+| ++.++....    +.-.+
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~-tg~~~~l~~~~---~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecc-cceeeEEeeee---cCCCcccceeeEECCCC-CEEEEeccccccccceeE
Confidence            35678888889888877654 48889988 34333322111   01122357888999999 766554322    23455


Q ss_pred             EECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcc----eeEEeec
Q 014644          215 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTP----VATFKIH  288 (421)
Q Consensus       215 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~----~~~~~~~  288 (421)
                      |.+..++..    .....              -...+.++|+++++.+... +. +.|..|++......    ...+...
T Consensus       133 ~~~~~g~~~----~~~~~--------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         133 YHVAKGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             EEEETTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             eeecCCcEE----EEeec--------------cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence            655554322    22222              2356789999999877655 44 88999987532211    1111111


Q ss_pred             cCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644          289 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  357 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (421)
                      ....         .   ....+++..+|.+.++.-..+.|..||-. + +....+.-....+++++|-.
T Consensus       195 ~~~~---------g---~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-~~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         195 TGIK---------G---GMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             TTSS---------S---EEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSBEEEEEEES
T ss_pred             Cccc---------c---cccceEEcCCCCEEeeeeCCCceEEecCC-C-cEeeEecCCCCceEEEEEeC
Confidence            1100         0   11578999999988777778899999954 4 55566655445566777753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.64  E-value=0.0058  Score=52.47  Aligned_cols=152  Identities=13%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             EEeecC---CCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCC-CeEEEEEcCC------
Q 014644          143 SISNNS---DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRG------  210 (421)
Q Consensus       143 ~l~~~~---~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~d~------  210 (421)
                      .+++..   ||++|+..  .+.+|-+-|++ ..+..+++.++      ....+..++..++.. .+++..+.+.      
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~-~fkt~kIi~iP------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECc-ceeeeEEEecC------CCCCCceeecccCCCeEEEEccCccccccCCC
Confidence            455543   89999986  78899999998 56666655332      223345555544331 4565555432      


Q ss_pred             ------------eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC---C-------
Q 014644          211 ------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---M-------  268 (421)
Q Consensus       211 ------------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~-------  268 (421)
                                  .+.++|..+.+...+    ...              ......+.++|+|+++++.+.   .       
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~Q----V~V--------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~  223 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQ----VLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM  223 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEE----EEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEE----eee--------------CCChhccccCCCCCEEEEEeccccCCcchhhc
Confidence                        355677766543311    111              234668899999999887531   1       


Q ss_pred             ------eEEEEEC-----------------------CCC--CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC
Q 014644          269 ------NLKLWDI-----------------------RMD--STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL  317 (421)
Q Consensus       269 ------~i~i~d~-----------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~  317 (421)
                            .+.++++                       +..  ...+..+.....+                ..+.++|||+
T Consensus       224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsP----------------HGV~vSPDGK  287 (459)
T d1fwxa2         224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKK  287 (459)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSC----------------CCEEECTTSS
T ss_pred             ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCC----------------CceEECCCCC
Confidence                  2333333                       110  0111112222221                5789999999


Q ss_pred             EEEEee-CCCeEEEEecCC
Q 014644          318 HFATGS-YSNLLRIFSHGV  335 (421)
Q Consensus       318 ~l~~~s-~dg~i~iwd~~~  335 (421)
                      ++++++ -+.++.++|++.
T Consensus       288 yi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         288 HLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeCCcCCcEEEEEehh
Confidence            987655 589999999874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.11  Score=42.13  Aligned_cols=150  Identities=10%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcccccccchhhhccccccCC
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  238 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~  238 (421)
                      .+|.+-|+....+..+           ..-...+.-.+|.. +.|+.-+ ..++.++|+++.+..    +.+..      
T Consensus        45 ~~VvIidl~n~~~~~R-----------rpi~AdsAIMhP~~-~IiALra-g~~LQiFnletK~kl----ks~~~------  101 (327)
T d1utca2          45 AQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM------  101 (327)
T ss_dssp             EEEEEEETTSTTSCEE-----------EECCCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC------
T ss_pred             ceEEEEECCCCCccee-----------cccchhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhh----ceEEc------
Confidence            4677777763333222           11123455678987 7777665 678999999986543    33333      


Q ss_pred             CcccccccccceeEEEEcCCCCEEEEecCCeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCE
Q 014644          239 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH  318 (421)
Q Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~  318 (421)
                              ...|.-=.|-.+ +.|+.-++..|+-|+++....+.+.+..|....        +.-|   ..-..+++.+|
T Consensus       102 --------~e~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~--------~~QI---InY~~d~~~kW  161 (327)
T d1utca2         102 --------TDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA--------GCQI---INYRTDAKQKW  161 (327)
T ss_dssp             --------SSCCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEEECCGGGT--------TCEE---EEEEECTTSCE
T ss_pred             --------CCCcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhhhhccccc--------CceE---EEEEECCCCCE
Confidence                    346666677654 456555557899999976667888888877642        2222   46778889998


Q ss_pred             EEEee---C----CCeEEEEecCCCCCceeEEecCCCCccce
Q 014644          319 FATGS---Y----SNLLRIFSHGVGSAGGITVEAGKNENRKP  353 (421)
Q Consensus       319 l~~~s---~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  353 (421)
                      ++..+   .    .|.+.+|..+  ....+.++||...-..+
T Consensus       162 ~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~ieGhaa~F~~~  201 (327)
T d1utca2         162 LLLTGISAQQNRVVGAMQLYSVD--RKVSQPIEGHAASFAQF  201 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETT--TTEEEEECCSEEEEEEE
T ss_pred             EEEEeEecCCCceeEEEEEEEec--cCcCccccceeeeeEEE
Confidence            76433   2    4678999988  45778888886544333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.11  Score=41.95  Aligned_cols=174  Identities=9%  Similarity=-0.032  Sum_probs=97.0

Q ss_pred             cceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcC-CeEEEE
Q 014644          139 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLV  215 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-~~v~iw  215 (421)
                      ..+..+++..-+..|..+  ..+.|.+.+++ +.....++       ......+..++++|.. .+++..... +..+|+
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l~-------~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEEe-------cccccCCcEEEEeccc-CcEEEeecCCCCcEEE
Confidence            357788887656666544  67899999988 33322222       2223567899999987 566544322 233344


Q ss_pred             --ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCc
Q 014644          216 --DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       216 --d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                        ++......    .....             .-....++++.+.++.|...+ . +.|...++.. ......+.+...+
T Consensus       150 r~~~dG~~~~----~i~~~-------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~~~~P  211 (263)
T d1npea_         150 TSHMDGTNRR----ILAQD-------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP  211 (263)
T ss_dssp             EEETTSCCCE----EEECT-------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred             EecCCCCCce----eeeee-------------cccccceEEEeecCcEEEEEeCCCCEEEEEECCC-CCeEEEECCCCCc
Confidence              44432211    11111             124567999998877776553 3 8899999863 3322233332222


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEecCCCCccceeeec
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA  357 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  357 (421)
                                      .++++.  +.+|+.. ...+.|...|..+++.....+.........+++.+
T Consensus       212 ----------------~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         212 ----------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             ----------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ----------------EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence                            467764  4455544 45688888888877333333333333334444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.39  E-value=0.21  Score=41.78  Aligned_cols=154  Identities=8%  Similarity=0.051  Sum_probs=78.6

Q ss_pred             cEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE--ecCCCC-eEEEEEcCCeEEEEECCc---ccccccchhhhccc
Q 014644          160 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRDA  233 (421)
Q Consensus       160 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~h  233 (421)
                      +|.+|.+......+..+.............++.+|+  +|.... +++....+|.+..|.+..   +......++.+.. 
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence            577787763333333221110000111234777777  665423 455566789998887643   2222233344443 


Q ss_pred             cccCCCcccccccccceeEEEEcCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEE
Q 014644          234 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV  312 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (421)
                                   ...+..+.+.+....|..+.+ ..|..++..........+.......         ...-++-.++.
T Consensus       179 -------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~---------~l~~D~EGlai  236 (353)
T d1h6la_         179 -------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------HLTPDIEGLTI  236 (353)
T ss_dssp             -------------SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSS---------SCCSCEEEEEE
T ss_pred             -------------CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCc---------cccCCccccEE
Confidence                         457889999998888888765 5566666643221111111110000         00112345554


Q ss_pred             c--CCCC-EEEEee-CCCeEEEEecCCC
Q 014644          313 S--GDGL-HFATGS-YSNLLRIFSHGVG  336 (421)
Q Consensus       313 s--p~~~-~l~~~s-~dg~i~iwd~~~~  336 (421)
                      -  +++. ||++.+ .+++..|||..+.
T Consensus       237 y~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         237 YYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            3  3323 555444 5789999998764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.23  Score=39.88  Aligned_cols=160  Identities=9%  Similarity=-0.050  Sum_probs=95.7

Q ss_pred             CCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEE-EcCCeEE
Q 014644          137 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVR  213 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d~~v~  213 (421)
                      +...+..++|.+..+.|.-+  .++.|+..+++ +.....++       ......+.++++..-+ ..|+.+ ...+.|.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~-g~~~~~v~-------~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~  104 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTII-------RQDLGSPEGIALDHLG-RTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEE-------CTTCCCEEEEEEETTT-TEEEEEETTTTEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcc-cCCcEEEE-------EeccccccEEEEeccC-CeEEEeccCCCEEE
Confidence            34457789998877777765  67889888887 33333322       2223457899998766 555544 4567899


Q ss_pred             EEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEec-C-CeEEEEECCCCCcceeEEeeccCc
Q 014644          214 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHL  291 (421)
Q Consensus       214 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~~  291 (421)
                      +.++......    .+...             ....+..++++|...++.... . +..+|+.....+.....+....-.
T Consensus       105 ~~~~dg~~~~----~l~~~-------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_         105 VAKMDGTQRR----VLFDT-------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             EEETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             EEecCCceEE----EEecc-------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            9998754311    11111             124578999999777776442 2 333444332224333333221111


Q ss_pred             ccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCC
Q 014644          292 RPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVG  336 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~  336 (421)
                                    ...++++.+.++.|+.. ...+.|...+++..
T Consensus       168 --------------~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         168 --------------LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             --------------CEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             --------------ccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence                          11589999887777655 45788988888754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.16  E-value=0.29  Score=40.97  Aligned_cols=168  Identities=10%  Similarity=0.054  Sum_probs=88.0

Q ss_pred             ceEEEeecCCCCEEEEE-c------------CCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEE--ecCCCCeEE
Q 014644          140 NINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLA  204 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~  204 (421)
                      ...+++..|+|..++++ .            .|.|.++|++........+...........-....+.+  .+++..+|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            34567788888877765 2            38899999874433333222111111111111233333  345523454


Q ss_pred             EEE---cCCeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEecC--------------
Q 014644          205 YSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--------------  267 (421)
Q Consensus       205 s~~---~d~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------------  267 (421)
                      ...   ...+|.+|++............+..            ......+.+++..+|.++++-..              
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~------------~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~  183 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  183 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECC------------TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHT
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCC------------ccccCccceEEecCCCEEEecCccCcChhhhhhhHhh
Confidence            443   3457777776543211111111111            01235788888889988887311              


Q ss_pred             --CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCC
Q 014644          268 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVG  336 (421)
Q Consensus       268 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~  336 (421)
                        +...+|.... ++......+-..+                ..++++||+++|+.+ +..+.|+.|++...
T Consensus       184 ~~~~g~v~~~~~-~~~~~~~~~l~~p----------------NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         184 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             TCCCEEEEEECS-SCEEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCceeEEEEcC-CceEEEcCCCCcc----------------ceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence              1234444432 2222222222222                689999999887655 45789999998754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.57  E-value=0.65  Score=40.43  Aligned_cols=59  Identities=17%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             cceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCC-CCCccCCCeeEEEEecC
Q 014644          139 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPI  198 (421)
Q Consensus       139 ~~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~  198 (421)
                      ...++|+|.||+++|++- ..|.|++++.. ++....+..+... ...........++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            457799999999999998 68999999877 4443333322211 11223456889999996

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.47  Score=37.99  Aligned_cols=179  Identities=6%  Similarity=-0.034  Sum_probs=100.2

Q ss_pred             CCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE--cCCeE
Q 014644          137 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFV  212 (421)
Q Consensus       137 h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~d~~v  212 (421)
                      ....+..+++.+.+..|..+  ..++|.+.+++ +......+       .........++++|.. .+|+...  ..+.|
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~~-------~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI  145 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEEE-------cCCCCCcceEEEEccc-CeEEEeccCCCcce
Confidence            33456778887766666654  67889999998 33333222       2234567899999976 5555443  33456


Q ss_pred             EEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccC
Q 014644          213 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      .-.++......    .+...             .-....++++.+.++.|..+ .. +.|...++.. ............
T Consensus       146 ~r~~~dGs~~~----~l~~~-------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~  207 (266)
T d1ijqa1         146 KKGGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKR  207 (266)
T ss_dssp             EEEETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTT
T ss_pred             eEeccCCCcee----ccccc-------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCc
Confidence            55665543211    11111             12456889999988777665 33 8899999863 333222322222


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEe-eCCCeEEEEecCCCCCceeEEecCCC-CccceeeecC
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAA  358 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~  358 (421)
                      ..             ...++++.  +.+|+.. ..++.|+..+..++.. ...+..... +..-..+.|.
T Consensus       208 ~~-------------~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~-~~~~~~~~~~p~~i~v~~~~  261 (266)
T d1ijqa1         208 LA-------------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVLFHNL  261 (266)
T ss_dssp             TS-------------SEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC-CEEEECSCSCCCCEEEESGG
T ss_pred             cc-------------ccEEEEEE--CCEEEEEECCCCeEEEEECCCCcc-eEEEEcCCCCceEEEEECCc
Confidence            11             00356665  3455544 4678888888877743 344444333 3333344444

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.23  E-value=1.4  Score=37.51  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             ceeEEEEcCCCCEEEEecC--CeEEEEECCCC-------CcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEE
Q 014644          249 SISDIKFANDGQHLLSRDY--MNLKLWDIRMD-------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF  319 (421)
Q Consensus       249 ~v~~~~~s~~~~~l~~~~~--~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l  319 (421)
                      ....+.++|||+++++++.  .++.++|+++-       ..+...+.+...            .-.+-...+|+..|...
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e------------lglgPLht~fd~~g~ay  343 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE------------LGLGPLHTAFDGRGNAY  343 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB------------CCSCEEEEEECTTSEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc------------cCcCccccccCCCceEE
Confidence            4678999999999998754  89999999631       111111111110            00012567898887544


Q ss_pred             EEeeCCCeEEEEecC
Q 014644          320 ATGSYSNLLRIFSHG  334 (421)
Q Consensus       320 ~~~s~dg~i~iwd~~  334 (421)
                      .+---|..|.-|++.
T Consensus       344 tslfids~v~kw~~~  358 (459)
T d1fwxa2         344 TSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEETTTTEEEEEEHH
T ss_pred             EEeeccceEEEEecc
Confidence            444579999999985

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.62  E-value=1.4  Score=35.46  Aligned_cols=208  Identities=9%  Similarity=0.111  Sum_probs=113.7

Q ss_pred             cCCCCeEEEEeCCCcEEEeecCCceeEEeeecCCCCCcccccccccccceeeccCCCCceeeeecccccccceeEEeecc
Q 014644           44 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  123 (421)
Q Consensus        44 ~~~~~~l~t~s~d~~v~lwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  123 (421)
                      +|..+.||.=+ ..++.++|+++.+  ++.....+++|.-..|..++.-           -+     .+...+.-|+++.
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~--klks~~~~e~VvfWkWis~~~L-----------~l-----VT~taVYHW~~~g  131 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMTDDVTFWKWISLNTV-----------AL-----VTDNAVYHWSMEG  131 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTE--EEEEEECSSCCCEEEESSSSEE-----------EE-----ECSSEEEEEESSS
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhh--hhceEEcCCCcEEEEecCCCEE-----------EE-----EcCCceEEEcccC
Confidence            57778887777 5689999999876  3333345555443333321111           11     1123467788854


Q ss_pred             cceeeeeeeecCCCC----cceEEEeecCCCCEEEE-E---c----CCcEEEEeCCCCceeeeeeecCCCCCCccCCCee
Q 014644          124 SVHARCQKVYPHAHD----FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  191 (421)
Q Consensus       124 ~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s-~---~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (421)
                      .  ..+.+.+ ..|.    ..|..-..+++.++++. |   .    .|.+.||..+.  +.-+.+       ++|.+.-.
T Consensus       132 ~--s~P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~i-------eGhaa~F~  199 (327)
T d1utca2         132 E--SQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPI-------EGHAASFA  199 (327)
T ss_dssp             S--CCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEE-------CCSEEEEE
T ss_pred             C--CCchhhh-hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCccc-------cceeeeeE
Confidence            3  2577777 5554    35677778899998775 3   2    46789999882  222322       56654333


Q ss_pred             EEEEe--cCCCCeEEEEE---cCCeEEEEECCcccccccc--hhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          192 SAEFH--PIYCNLLAYSS---SRGFVRLVDMRQSALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       192 ~~~~~--p~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~--~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      .+.+.  +....+++.+.   ..+.+++.++.........  .+..+. ..++.      ...+-.-++..++.-..+..
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppe------a~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------CTTCCEEEEEEETTTTEEEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCcc------ccCCcEEEEEeeccCCEEEE
Confidence            33222  11112333333   2257888887663211100  011111 00111      11233456777776556665


Q ss_pred             ecC-CeEEEEECCCCCcceeEEeeccC
Q 014644          265 RDY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       265 ~~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      -+. |.+++||+.+ +.++..-+....
T Consensus       273 iTK~G~i~lyDleT-gt~i~~nRIs~~  298 (327)
T d1utca2         273 ITKYGYIHLYDLET-GTCIYMNRISGE  298 (327)
T ss_dssp             EETTSEEEEEETTT-CCEEEEEECCSS
T ss_pred             EecCcEEEEEEccc-ccEEEEeecCCC
Confidence            555 9999999998 887766555444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.58  E-value=0.43  Score=40.39  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=68.0

Q ss_pred             EEEEecCCCCeEEEEEcC-----C------eEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCC
Q 014644          192 SAEFHPIYCNLLAYSSSR-----G------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  260 (421)
Q Consensus       192 ~~~~~p~~~~~l~s~~~d-----~------~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~  260 (421)
                      ......++ ++++.|+.+     +      .+.+||..+++....  .....            .+.......++.++|+
T Consensus        24 ~a~~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--~~~~~------------~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          24 AAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--TVTVT------------KHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             EEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--EEEEC------------SCCCSSCEEEECTTSC
T ss_pred             EEEEeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec--CCCCC------------CcccceeEEEEecCCc
Confidence            33344566 788877742     1      367899988653210  00000            0122334667889999


Q ss_pred             EEEEecC--CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCC------CeEEEEe
Q 014644          261 HLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFS  332 (421)
Q Consensus       261 ~l~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~d------g~i~iwd  332 (421)
                      +++.|..  ..+.+||..+ ..... ........  .           ...++..+||++++.|+.+      ..+.+||
T Consensus        89 i~v~Gg~~~~~~~~yd~~~-~~w~~-~~~~~~~r--~-----------~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSS-DSWIP-GPDMQVAR--G-----------YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGG-TEEEE-CCCCSSCC--S-----------SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             EEEeecCCCcceeEecCcc-Ccccc-cccccccc--c-----------ccceeeecCCceeeeccccccccccceeeeec
Confidence            9998853  7899999875 43322 11111110  0           0367778899998888753      3688999


Q ss_pred             cCCC
Q 014644          333 HGVG  336 (421)
Q Consensus       333 ~~~~  336 (421)
                      ..+.
T Consensus       154 ~~~~  157 (387)
T d1k3ia3         154 PSSK  157 (387)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.95  E-value=5.1  Score=34.13  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCeEEEEeC-CC----cEEEeecCCcee
Q 014644           39 VRWCAAPNGSMFILSTN-DK----TIKLWKVRDQKV   69 (421)
Q Consensus        39 v~~~~~~~~~~l~t~s~-d~----~v~lwd~~~~~~   69 (421)
                      ..|+.+|+++++|.+-+ .|    +|++.|+.+++.
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~  163 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE  163 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence            34556899998885532 33    799999999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=4.9  Score=31.63  Aligned_cols=167  Identities=6%  Similarity=-0.057  Sum_probs=86.8

Q ss_pred             EEEEEcCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEE-cCCeEEEEECCcccccccchhhh
Q 014644          152 TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARIL  230 (421)
Q Consensus       152 ~l~s~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~  230 (421)
                      +|+.+....|+..+++ +.+...++        .....+.+++|++.. +.|+-+. ..+.|.-.++.............
T Consensus         3 fLl~s~~~~I~~~~l~-~~~~~~~~--------~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~   72 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLD-RSEYTSLI--------PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI   72 (266)
T ss_dssp             EEEEECBSSEEEEETT-SCCCEEEE--------CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred             EEEEECCCeEEEEECC-CCcceeee--------CCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCcceEEEE
Confidence            4555544468888987 33322222        233457789999987 6666654 55667666654321110000001


Q ss_pred             ccccccCCCcccccccccceeEEEEcCCCCEEEEe-cC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeee
Q 014644          231 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF  308 (421)
Q Consensus       231 ~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (421)
                                   ......+.++++.+.+..|... .. +.|.+.++.. ......+.......               .
T Consensus        73 -------------~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~~~~~~~~P---------------~  123 (266)
T d1ijqa1          73 -------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKP---------------R  123 (266)
T ss_dssp             -------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCE---------------E
T ss_pred             -------------eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC-ceEEEEEcCCCCCc---------------c
Confidence                         1112356788888766666655 34 8899999863 33222222211111               5


Q ss_pred             EEEEcCCCCEEEEee--CCCeEEEEecCCCCCceeEEecCCCCccceeeecC
Q 014644          309 ECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA  358 (421)
Q Consensus       309 ~~~~sp~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (421)
                      .++++|...+|....  ..+.|.-.++... .........-.....+++.+.
T Consensus       124 ~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~  174 (266)
T d1ijqa1         124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL  174 (266)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT
T ss_pred             eEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeecc
Confidence            889998766665443  3455666666533 222222222233455555544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.14  E-value=6.1  Score=32.66  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=58.2

Q ss_pred             ceeEEeecccceeeeeeeecCCCCcceEEEeecCCCCEEEEE--cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeE
Q 014644          115 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  192 (421)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  192 (421)
                      .+.+||..+..-... ......|.......++.+++++++.|  ...++.+||..+ .. ....    ..+... ..-.+
T Consensus        53 ~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~-~~-w~~~----~~~~~~-r~~~~  124 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS-DS-WIPG----PDMQVA-RGYQS  124 (387)
T ss_dssp             EEEEECTTTCCBCCC-EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG-TE-EEEC----CCCSSC-CSSCE
T ss_pred             EEEEEECCCCcEeec-CCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc-Cc-cccc----cccccc-ccccc
Confidence            456788876522111 11112333334566788999999997  457899999983 32 2222    112211 12235


Q ss_pred             EEEecCCCCeEEEEEcC------CeEEEEECCccc
Q 014644          193 AEFHPIYCNLLAYSSSR------GFVRLVDMRQSA  221 (421)
Q Consensus       193 ~~~~p~~~~~l~s~~~d------~~v~iwd~~~~~  221 (421)
                      .+..+|+ ++++.++.+      ..+.+||..+.+
T Consensus       125 ~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         125 SATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeeecCC-ceeeeccccccccccceeeeecCCCCc
Confidence            6677888 888877643      368899988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.70  E-value=8.8  Score=33.99  Aligned_cols=51  Identities=8%  Similarity=0.066  Sum_probs=34.6

Q ss_pred             CCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEee
Q 014644          258 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS  323 (421)
Q Consensus       258 ~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~s  323 (421)
                      .|.+++.|+. +.++.+|.++ ++.+-.++.......              .-+.+..+|+ ||++.+
T Consensus       468 agglVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~--------------~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVA--------------APMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCC-CcEeEEEECCCCccc--------------cCEEEEECCEEEEEEEe
Confidence            4567777765 9999999998 999988876554321              2356666775 555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.34  E-value=6.6  Score=32.20  Aligned_cols=99  Identities=7%  Similarity=-0.026  Sum_probs=57.8

Q ss_pred             ccceeEEeecccc-eeeeeeeecCCCCcceEEEeecCCCCEEEEE----cC------------CcEEEEeCCCCceeeee
Q 014644          113 NMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA----DD------------LRINLWNLEISDQCFNI  175 (421)
Q Consensus       113 ~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~----~d------------~~i~lwd~~~~~~~~~~  175 (421)
                      ...+.+++..... +...++.+........+++++..++.+++|-    .+            .+-.+|..+. +.. +.
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~-~~  200 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDV-RV  200 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCE-EE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-Cce-EE
Confidence            3456666654332 2344444423334557899998899888882    11            2344555442 221 22


Q ss_pred             eecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCcc
Q 014644          176 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  220 (421)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~  220 (421)
                      .       ...-.....++++|++..++++-+..+.|+.|++...
T Consensus       201 ~-------~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         201 V-------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             E-------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             E-------cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            1       1223457899999998334455557789999998754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.58  E-value=10  Score=33.62  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=39.5

Q ss_pred             CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCCCCCc
Q 014644          268 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG  339 (421)
Q Consensus       268 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~~~~~  339 (421)
                      |.+.-||+.+ ++.+-+.+.....                .+-..+-.+.++++|+.||.++.+|.++++.+
T Consensus       457 G~l~AiD~~t-Gk~~W~~~~~~p~----------------~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVA-QKAAWSVEHVSPW----------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTT-TEEEEEEEESSSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCC-CceEeeecCCCCC----------------CCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            6889999987 8877766544322                11223336778888999999999999999443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.40  E-value=6  Score=29.84  Aligned_cols=152  Identities=13%  Similarity=0.031  Sum_probs=81.1

Q ss_pred             ceEEEeecCCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCC--ccCCCeeEEEEecCCCCeEEEEEc-CCeEEEE
Q 014644          140 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV  215 (421)
Q Consensus       140 ~v~~l~~~~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~-d~~v~iw  215 (421)
                      +|.+++.. +....++| ......+|-++ ++.+.+..++.+..+.  -..+.|..+.+-..++.-+.++.. .|.++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            45555553 34455566 66678888888 6776666544432221  012334444443322244555554 5666666


Q ss_pred             ECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEEe----cC-CeEEEEECCCCCcceeEEeeccC
Q 014644          216 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKLWDIRMDSTPVATFKIHEH  290 (421)
Q Consensus       216 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~-~~i~i~d~~~~~~~~~~~~~~~~  290 (421)
                      +...                            +.++.....++.+. +++    .. .-| -+|++. ++ ...+.-+..
T Consensus       183 tpke----------------------------GS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s-~~-yerve~P~k  230 (313)
T d2hu7a1         183 DSGE----------------------------GSFSSASISPGMKV-TAGLETAREARLV-TVDPRD-GS-VEDLELPSK  230 (313)
T ss_dssp             CCSS----------------------------EEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTT-CC-EEECCCSSC
T ss_pred             cCCC----------------------------CcccceeEccCcee-eeccCCCCceEEE-EEeccc-Cc-eeeeecCcc
Confidence            5443                            45667777776655 443    12 223 447763 32 333332222


Q ss_pred             cccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEe
Q 014644          291 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS  332 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd  332 (421)
                      .....    ...   .++-+-+.|++++++.+-.||.-+++.
T Consensus       231 d~~sy----~p~---~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         231 DFSSY----RPT---AITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             HHHHH----CCS---EEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceee----cce---EEEeeeeCCCCcEEEEEecCCchheee
Confidence            11000    000   112345899999989999999999886

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.27  E-value=9  Score=34.05  Aligned_cols=55  Identities=7%  Similarity=0.080  Sum_probs=34.1

Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      |.|.-||+.+++...+.-         ...+..+-..+-.+ .++++++.|+.++.+|.++++.+
T Consensus       457 G~l~AiD~~tGk~~W~~~---------~~~p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVE---------HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEE---------ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeec---------CCCCCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEe
Confidence            467778887444444322         11111111233345 68888999999999999999854

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.30  E-value=8.1  Score=34.36  Aligned_cols=55  Identities=11%  Similarity=0.121  Sum_probs=33.2

Q ss_pred             CcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEecCCCCeEEEEEcCCeEEEEECCccccc
Q 014644          159 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  223 (421)
Q Consensus       159 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d~~v~iwd~~~~~~~  223 (421)
                      |.|.-+|+++++...+.-         ...+..+-...-.+ .+++.++.|+.++.+|.++++.+
T Consensus       444 G~l~AiD~~TG~~~W~~~---------~~~~~~~g~l~Tag-glVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKW---------EKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEE---------ESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcC---------CCCCCCcceeEecC-CEEEEECCCCeEEEEECCCCcEE
Confidence            567777877444443322         11111111122234 57888999999999999998754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.69  E-value=10  Score=31.14  Aligned_cols=152  Identities=9%  Similarity=0.131  Sum_probs=80.4

Q ss_pred             CCCCEEEEE-cCCcEEEEeCCCCceeeeeeecCCCCCCccCCCeeEEEEec----CC-CCeEEEEE-cC---CeEEEEEC
Q 014644          148 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP----IY-CNLLAYSS-SR---GFVRLVDM  217 (421)
Q Consensus       148 ~~~~~l~s~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~-~~~l~s~~-~d---~~v~iwd~  217 (421)
                      |+..+++.. .++-|.+||++  ++.++.+.         .+.+..+..-.    ++ ..-++.++ .+   .+|.+|.+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~--G~~l~~~~---------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE--GKMLHSYH---------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT--CCEEEECC---------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC--CcEEEecc---------cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            345566665 66669999997  55554431         23444443321    22 12355555 22   36778877


Q ss_pred             CcccccccchhhhccccccCCCcccccccccceeEEEE--cCC-CCEE-EEecC-CeEEEEECCCC--C----cceeEEe
Q 014644          218 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--AND-GQHL-LSRDY-MNLKLWDIRMD--S----TPVATFK  286 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~--s~~-~~~l-~~~~~-~~i~i~d~~~~--~----~~~~~~~  286 (421)
                      ......   ...+..    +..  ........+..+++  ++. |.+. +.... |.+..|.+...  +    +.++.+.
T Consensus       107 d~~~~~---l~~~~~----~~~--p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~  177 (353)
T d1h6la_         107 DGKNGT---LQSITD----PNR--PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK  177 (353)
T ss_dssp             ETTTTE---EEECSC----SSS--CEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred             cCcccc---cccccc----ccc--ccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC
Confidence            532211   011111    000  00001234677777  654 5543 34444 88888877422  2    2233443


Q ss_pred             eccCcccccccccCCCcceeeeEEEEcCCCCEEEEeeCCCeEEEEecCC
Q 014644          287 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV  335 (421)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~s~dg~i~iwd~~~  335 (421)
                      .....                -+|.+.+..+.|+.+-++.-|+.++...
T Consensus       178 ~~~q~----------------EGCVvDde~~~LyisEE~~Giw~~~a~~  210 (353)
T d1h6la_         178 MNSQT----------------EGMAADDEYGSLYIAEEDEAIWKFSAEP  210 (353)
T ss_dssp             CSSCE----------------EEEEEETTTTEEEEEETTTEEEEEESST
T ss_pred             CCCcc----------------ceEEEeCCCCcEEEecCccceEEEEecc
Confidence            33322                5899999889999999888777776653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.39  E-value=12  Score=31.65  Aligned_cols=105  Identities=9%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             CCCcceEEEeecCCCCEEEEE-c-----CCcEEEEeCCCCceeee-eeecCCCCCCccCCCeeEEEEecCCCCeEEEEEc
Q 014644          136 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFN-IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  208 (421)
Q Consensus       136 ~h~~~v~~l~~~~~~~~l~s~-~-----d~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  208 (421)
                      ++.-.+...+++|++++++.+ +     -..|++.|+. +++.+. .+       .  ......++|.+++ ..|+....
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~-tg~~~~~~i-------~--~~~~~~~~W~~D~-~~~~Y~~~  190 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDVL-------E--RVKFSCMAWTHDG-KGMFYNAY  190 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEEE-------E--EECSCCEEECTTS-SEEEEEEC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccC-cceeccccc-------c--cccccceEEcCCC-CEEEEEEe
Confidence            344445567789999999975 2     3469999999 454432 22       1  1122568899998 66665443


Q ss_pred             C----------------CeEEEEECCcccccccchhhhccccccCCCcccccccccceeEEEEcCCCCEEEE
Q 014644          209 R----------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  264 (421)
Q Consensus       209 d----------------~~v~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (421)
                      +                ..|..+.+.+....+.  .++..           ......+..+..++++++++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~--~v~~e-----------~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEE
T ss_pred             ccccCcccccccccCCcceEEEEECCCCccccc--ccccc-----------ccCCceEEeeeccCCcceeeE
Confidence            2                2466666665432211  12221           011234667788999998864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.23  E-value=5  Score=35.90  Aligned_cols=52  Identities=13%  Similarity=0.139  Sum_probs=36.3

Q ss_pred             cCCCCEEEEecC-CeEEEEECCCCCcceeEEeeccCcccccccccCCCcceeeeEEEEcCCCC-EEEEe
Q 014644          256 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG  322 (421)
Q Consensus       256 s~~~~~l~~~~~-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~  322 (421)
                      +..|.++++|+. +.++.+|.++ ++.+-.++.......              .-+.+..+|+ ||+..
T Consensus       494 stagglVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~--------------~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVS--------------PPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCS--------------CCEEEEETTEEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCC-CcEeEEEECCCCccc--------------cCEEEEECCEEEEEEE
Confidence            345667777765 9999999998 999988876554321              2367777885 55543