Citrus Sinensis ID: 014646

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccHcHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHcccccc
Coil and Loop (DISEMBL)
MVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLvfatqapvnyVCLHSVKPSLRALSMAISTVSIhifgdvpssplvgvlQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKfnedgenqisldskanmkpllegngdnl
Flexible Loop (DISEMBL)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENqisldskanmkpllegngdnl
Low Complexity Region (SEG)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered region (IsUnstruct)
***LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKF***************************
Disordered Region (DISOPRED)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDK****************************
Disordered Region (DISEMBL)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Disordered Region (DISPRO)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ*******************EGSEASNLNDHVSEDISDQASERS******SRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.912	0.793	0.679	1e-158
F4IKF6	510	Probable sphingolipid tra	no	no	0.916	0.756	0.676	1e-154
Q6NMN6	492	Probable sphingolipid tra	no	no	0.900	0.770	0.603	1e-137
Q5XGK0	526	Protein spinster homolog	N/A	no	0.750	0.600	0.286	2e-24
A8WGF7	526	Protein spinster homolog	yes	no	0.750	0.600	0.278	3e-23
Q8IVW8	549	Protein spinster homolog	yes	no	0.831	0.637	0.237	6e-21
A2SWM2	504	Protein spinster homolog	yes	no	0.833	0.696	0.244	5e-20
Q91VM4	549	Protein spinster homolog	yes	no	0.831	0.637	0.232	1e-19
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.748	0.520	0.265	2e-19
Q9D232	514	Protein spinster homolog	no	no	0.855	0.700	0.261	7e-19

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/415 (67%), Positives = 320/415 (77%), Gaps = 31/415 (7%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFWSI ICRM VGVGEAS
Sbjct: 99  MVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFWSITICRMFVGVGEAS 158

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS L WR AFWGEAILM
Sbjct: 159 FVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGSVLPWRAAFWGEAILM 218

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPFAVL FVIKPL LKGFAP ++GK +            NLN               +  
Sbjct: 219 LPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN---------------VLP 253

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
           +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NA
Sbjct: 254 VGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENA 308

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y F
Sbjct: 309 DMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAF 368

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           LALF VGELLVFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+
Sbjct: 369 LALFAVGELLVFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDY 428

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 415
           VNNWR T+L LT + F AA IW +GIFL S+D++NED E   ++  ++   PLL+
Sbjct: 429 VNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRYNEDSEPD-AVTRESTAAPLLQ 482

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  543 bits (1400), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/405 (67%), Positives = 315/405 (77%), Gaps = 19/405 (4%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEAS
Sbjct: 112 MVGLLIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEAS 166

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM
Sbjct: 167 FISLAAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLM 226

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
            PFAVL F++KPLQLKG            +   + +    +++ +  D  + + E S  S
Sbjct: 227 APFAVLGFLMKPLQLKG------------SETLKNNNRLQVDNEIEHDQFEVSIETSKSS 274

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              + F    + F++D KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NA
Sbjct: 275 YANAVF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNA 333

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DM+FG VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF
Sbjct: 334 DMIFGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGF 393

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           +ALF +GELLVFATQAPVNYVCLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH
Sbjct: 394 IALFALGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDH 453

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVG-IFLKSIDKFNEDGENQISL 404
           +N+WRKTTL LTSI FLAA IWF+G I L S    +E    QI L
Sbjct: 454 INSWRKTTLILTSILFLAAAIWFIGKINLNSFYSNDESFLVQIKL 498

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/396 (60%), Positives = 296/396 (74%), Gaps = 17/396 (4%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEAS
Sbjct: 90  MVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEAS 149

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG +G+HL WR+AF+ EAI M
Sbjct: 150 FISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAM 209

Query: 121 LPFAVLAFVIKP-LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK 179
             F +L+F IKP  QLKGFA  +S K          ++A           + Q   ++ K
Sbjct: 210 AVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE----------ASQIKTKTPK 259

Query: 180 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 239
           S       N +  F +D K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M N
Sbjct: 260 S------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKN 313

Query: 240 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
           ADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y 
Sbjct: 314 ADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYA 373

Query: 300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 359
           F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QD
Sbjct: 374 FIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQD 433

Query: 360 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFN 395
           H+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ N
Sbjct: 434 HLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSN 469

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 162/374 (43%), Gaps = 58/374 (15%)

Query: 8   SPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLA 65
           +P+F  L   +N   ++ VG+S W+  T  +   S+  FW   I R LVGVGEAS+ ++A
Sbjct: 112 APVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVGEASYSTIA 171

Query: 66  APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 125
              I D     Q+T  LS FY   P G  LGY+    VGS +      W  A+ + P   
Sbjct: 172 PTIIADLFLADQRTRMLSFFYFATPVGCGLGYI----VGSEMTSAAGDWHWALRVTPGLG 227

Query: 126 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 185
           L  V+  +                               V+E+    A ER        R
Sbjct: 228 LLAVLLLI------------------------------FVAEEPPRGALERK-----TDR 252

Query: 186 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYH----- 236
            L   S +S D K LL+   ++++  G+    FV GA + WGP    ++   IY      
Sbjct: 253 PLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMVIYKSKPCE 311

Query: 237 --MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL--- 289
             + N D  M+FGG+T + GI+G ++G  I  +   T   A  L+ A   + +   L   
Sbjct: 312 GGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLFLS 371

Query: 290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 349
            AF  +SL        +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  
Sbjct: 372 LAFADTSLVATYVFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAG 431

Query: 350 SSPLVGVLQDHVNN 363
           S  L+GV+ D +  
Sbjct: 432 SPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 161/374 (43%), Gaps = 58/374 (15%)

Query: 8   SPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVGEASFISLA 65
           +P+F  L   +N   ++ +G+S W+  T  +   S   FW   + R LVGVGEAS+ ++A
Sbjct: 112 APVFGYLGDRYNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVGEASYSTIA 171

Query: 66  APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV 125
              I D     Q++  LS FY   P G  LGY+     GS +      W  A+ + P   
Sbjct: 172 PTIIADLFLADQRSRMLSFFYFATPVGCGLGYI----AGSKVTSTAGDWHWALRVTPGLG 227

Query: 126 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR 185
           L  V+  +                               V+++    A ER        R
Sbjct: 228 LVAVLLLI------------------------------FVAKEPPRGALERK-----SDR 252

Query: 186 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYNIYH----- 236
            L   S FS D K LL+   ++++  G+    FV GA + WGP    ++   IY      
Sbjct: 253 PLTNTSWFS-DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRRVIYKTEPCQ 311

Query: 237 --MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL--- 289
             + N D  M+FGG+T V G++G ++G  I  +   T   A  L+ A   + +   L   
Sbjct: 312 GGICNYDDSMIFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMISSAPFLYLS 371

Query: 290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP 349
            AF  +SL    A   +GE L+    A V  + L+ V P+ R+ + A+  V  H+ GD  
Sbjct: 372 LAFADTSLVATYAFIFIGETLLSLNWALVADILLYVVIPTRRSTAEALQIVVSHLLGDAG 431

Query: 350 SSPLVGVLQDHVNN 363
           S  L+GV+ D +  
Sbjct: 432 SPYLIGVISDQIQK 445

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q8IVW8|SPNS2_HUMAN Protein spinster homolog 2 OS=Homo sapiens GN=SPNS2 PE=1 SV=2

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 80/430 (18%)

Query: 5   LVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+GEAS+
Sbjct: 152 MVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY-FWLLVLSRGLVGIGEASY 210

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILM 120
            ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L 
Sbjct: 211 STIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLG 270

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           +    L  ++ P   +G A                           + + DQ   R    
Sbjct: 271 MITGTLILILVPATKRGHA---------------------------DQLGDQLKAR---- 299

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP------KAGYNI 234
                     + + +D K L++ + YV + L   A +F  GA   W P      +     
Sbjct: 300 ----------TSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKT 349

Query: 235 YHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 285
               N+        ++FG +T   G +G ++G             A  L+ A   LG+  
Sbjct: 350 AETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLKTQRADPLVCAVGMLGSAI 409

Query: 286 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            I  +     SS+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+
Sbjct: 410 FICLIFVAAKSSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHL 469

Query: 345 FGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAAGIWFVGI 386
            GD  S  L+G + D +    K +                  + L  +FFLA  ++FV  
Sbjct: 470 LGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFVSD 529

Query: 387 FLKSIDKFNE 396
             ++  + N+
Sbjct: 530 RARAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 174/437 (39%), Gaps = 86/437 (19%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGV 56
           +   +VA+PIF  L    N   ++  G+  W+  T    SSF     +W + + R LVG+
Sbjct: 101 ICSFMVAAPIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSFITKEYYWLLVLSRCLVGI 158

Query: 57  GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV---VGSHLNWRYAF 113
           GE+S+ S++   I D     ++T  LS+FY+ IP G  LGY+ G +    G H  W +A 
Sbjct: 159 GESSYSSISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGH--WYWAL 216

Query: 114 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 173
               +L L    L  +                      VSE    S          +DQ 
Sbjct: 217 RVSPMLGLTAGTLILIF---------------------VSEPKRGS----------ADQP 245

Query: 174 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK---- 229
             R          L   + +  D K L + + YV + L   A +F  GA+  W P+    
Sbjct: 246 GGR----------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFGIWIPQYLVR 295

Query: 230 -------AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA 280
                  A    Y    S   ++FG +T V G++G + G             A  L+ A 
Sbjct: 296 AQVVQKSAESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCRQKTERADPLVCAV 355

Query: 281 TFLGA---ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI 337
           + LG+   I  +      S+ G      +GE L+F   A    + ++ V P+ RA ++A 
Sbjct: 356 SMLGSAIFICLIFVVAKKSIVGAYICIFIGETLLFLNWAITADILMYVVIPTRRATAVAF 415

Query: 338 STVSIHIFGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAA 379
              + H+ GD  S  L+G++ D +     T+                  + L  +FFLA 
Sbjct: 416 QGFTSHLLGDAGSPYLIGLISDSLQESYATSEIWQFLSLGYALMLCPFVIVLGGMFFLAT 475

Query: 380 GIWFVGIFLKSIDKFNE 396
            ++F+    K+  + N+
Sbjct: 476 ALFFLDDRDKAAKQVNQ 492

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 80/430 (18%)

Query: 5   LVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+GEAS+
Sbjct: 152 MVAAPIFGYLGDRFNRKVILSCGIFFWSAVTFSSSFIPQQY-FWLLVLSRGLVGIGEASY 210

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILM 120
            ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +W +A     +L 
Sbjct: 211 STIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQAAGDWHWALRVSPVLG 270

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           +    L  ++ P   +G A    G+                                   
Sbjct: 271 MITGTLILILVPATKRGHADQLGGQ----------------------------------- 295

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP------KAGYNI 234
                 L   + + +D K L++ + YV + L   A +F  GA   W P      +     
Sbjct: 296 ------LKARTSWLRDMKALIRNRSYVFSSLATSAVSFATGALGMWIPLYLHRAQVVQKT 349

Query: 235 YHMSNA-------DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 285
               N+        ++FG +T   G +G ++G             A  L+ A   LG+  
Sbjct: 350 AETCNSPPCGAKDSLIFGAITCFTGFLGVVTGAGATRWCRLRTQRADPLVCAVGMLGSAI 409

Query: 286 -ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            I  +     +S+ G      VGE L+F+  A    + ++ V P+ RA ++A+ + + H+
Sbjct: 410 FICLIFVAAKTSIVGAYICIFVGETLLFSNWAITADILMYVVIPTRRATAVALQSFTSHL 469

Query: 345 FGDVPSSPLVGVLQDHVNNWRKTT------------------LALTSIFFLAAGIWFVGI 386
            GD  S  L+G + D +    K +                  + L  +FFLA  ++F+  
Sbjct: 470 LGDAGSPYLIGFISDLIRQSTKDSPLWEFLSLGYALMLCPFVVVLGGMFFLATALFFLSD 529

Query: 387 FLKSIDKFNE 396
             K+  + N+
Sbjct: 530 RAKAEQQVNQ 539

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Mus musculus (taxid: 10090)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 61/376 (16%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRMLVGVGEA 59
           ++  +V +PIF  L   ++   ++ VG+ +W+  T        F W IA  R LVG+GEA
Sbjct: 160 VISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAF-RALVGIGEA 218

Query: 60  SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEA 117
           S+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR+A     
Sbjct: 219 SYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWRWALRVTP 277

Query: 118 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 177
           IL +    L  +IK                 V   SEGS   NL                
Sbjct: 278 ILGIVAVFLILLIK---------------DPVRGHSEGSH--NL---------------- 304

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
                      + + + QD K L++ + ++++  G+    FV GA ++WGP   Y    M
Sbjct: 305 -----------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLGMKM 353

Query: 238 S--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 288
              N +++       FG +T++ G++G   G F+   +      A  ++ A   L +   
Sbjct: 354 QPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFGLLVSAPL 413

Query: 289 LTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF 345
           LT  CL   S+  G  AL   G+L +    A V  + L+ V P+ R+ + A   +  H  
Sbjct: 414 LTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQILISHAL 473

Query: 346 GDVPSSPLVGVLQDHV 361
           GD  S  LVG + + +
Sbjct: 474 GDAGSPYLVGAISEAI 489

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|Q9D232|SPNS3_MOUSE Protein spinster homolog 3 OS=Mus musculus GN=Spns3 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 178/440 (40%), Gaps = 80/440 (18%)

Query: 4   LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEA 59
           LLV++P+F  L   +N   ++  G+ +W+   AG  SSF      W   + R  VG G A
Sbjct: 98  LLVSAPVFGYLGDRYNRKAILSFGILLWS--GAGLSSSFISYQYSWLFFLSRGFVGTGAA 155

Query: 60  SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAI 118
           S+ ++A   + D     Q+T  L++FY+ IP G  LGYV G  V     NWR+     A+
Sbjct: 156 SYSTIAPTVLGDLFVKDQRTCALAVFYIFIPVGSGLGYVLGSTVAELTGNWRW-----AL 210

Query: 119 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSI 178
            ++P                                 + A  L   +  D+   A+E+  
Sbjct: 211 RLMP------------------------------CLDAMALALLILLVPDVPRGAAEKQ- 239

Query: 179 KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--NIYH 236
              GE       S + +D + L +   +V + LG  A  FV GA  +W PK  +   + H
Sbjct: 240 ---GEVAVRAPRSSWCEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVH 296

Query: 237 -----------MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 285
                       S   ++FG +T+  GI+G + G     +       A  L+ A++    
Sbjct: 297 GLQLPCFQEQCHSQDSLIFGALTVATGIIGVMLGAEASRRYKKVNPRAEPLICASSLFAT 356

Query: 286 ISCL-TAFCLSSL-----YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST 339
             CL  A  L+S      Y FLAL   GELL+    A V  + L  V P  R  + A+  
Sbjct: 357 APCLYLALILASRTLLASYVFLAL---GELLLSCNWAVVADILLSVVVPRCRGTAEALQI 413

Query: 340 VSIHIFGDVPSSPLVG----VLQ-DHVNNWRKTTLALTSIFF-------LAAGIWFVGIF 387
              H+ GD  S  L G    VLQ +  +++ +  L+L   F        L  G + +   
Sbjct: 414 TVAHVLGDAGSPYLTGLISSVLQAERPDSYLQHFLSLQHSFLCCAFAIVLGGGFFLLTAL 473

Query: 388 LKSIDKFNEDGENQISLDSK 407
               D+       + +LDSK
Sbjct: 474 HLEKDQARARQPGKGTLDSK 493

Sphingolipid transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
255576025	505	transporter, putative [Ricinus communis]	0.980	0.817	0.796	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.995	0.784	0.771	0.0
359480514	510	PREDICTED: protein spinster homolog 1-li	0.995	0.821	0.771	0.0
255554517	541	transporter, putative [Ricinus communis]	0.990	0.770	0.716	1e-175
357485271	497	Spinster-like protein [Medicago truncatu	0.978	0.828	0.719	1e-172
356531403	496	PREDICTED: protein spinster homolog 1-li	0.978	0.830	0.711	1e-169
356546730	532	PREDICTED: protein spinster homolog 1-li	0.985	0.780	0.693	1e-169
356519493	530	PREDICTED: protein spinster homolog 1-li	0.985	0.783	0.697	1e-168
357164805	606	PREDICTED: protein spinster homolog 1-li	0.983	0.683	0.684	1e-167
296088668	427	unnamed protein product [Vitis vinifera]	0.947	0.934	0.711	1e-167

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/417 (79%), Positives = 369/417 (88%), Gaps = 4/417 (0%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 82  MVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSSFDFWSIAICRMLVGVGEAS 141

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG VGS+ NWRYAFWGEA+LM
Sbjct: 142 FISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGGFVGSNFNWRYAFWGEALLM 201

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPFAVL F +KPLQLKGFAPAES KA + +S+   + AS   D+ +EDIS +A + S K 
Sbjct: 202 LPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASITEDNGNEDISSRAFKAS-KL 257

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
            GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIYHMSNA
Sbjct: 258 KGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYHMSNA 317

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           DMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS ATFLGAI C +AFCL +LYGF
Sbjct: 318 DMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGATFLGAIFCFSAFCLKNLYGF 377

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           + LF+VGELLVFATQAPVNYVCLH VKP LR LSMAISTVSIHIFGDVPSSPLVGVLQDH
Sbjct: 378 IILFSVGELLVFATQAPVNYVCLHCVKPGLRPLSMAISTVSIHIFGDVPSSPLVGVLQDH 437

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           +NNWR+T+L LT++ F+AAGIWFVG+FLK +D  NEDGENQIS + K +M+PLLE N
Sbjct: 438 INNWRETSLILTAVLFIAAGIWFVGVFLKGVDMSNEDGENQISANVKGSMEPLLEEN 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/424 (77%), Positives = 365/424 (86%), Gaps = 5/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEAS
Sbjct: 106 MVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEAS 165

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAILM
Sbjct: 166 FVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAILM 225

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASERS 177
           LPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS ++
Sbjct: 226 LPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNKA 284

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
            KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYHM
Sbjct: 285 SKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYHM 344

Query: 238 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL 297
           +NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  L
Sbjct: 345 NNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKGL 404

Query: 298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 357
           YGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+L
Sbjct: 405 YGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGIL 464

Query: 358 QDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           QDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG 
Sbjct: 465 QDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEGE 523

Query: 418 GDNL 421
            D +
Sbjct: 524 DDEM 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/424 (77%), Positives = 365/424 (86%), Gaps = 5/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWSIAI RMLVGVGEAS
Sbjct: 82  MVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWSIAIFRMLVGVGEAS 141

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           F+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H NWRYAFWGEAILM
Sbjct: 142 FVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEHFNWRYAFWGEAILM 201

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV---SEDISDQASERS 177
           LPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V   +E IS+ AS ++
Sbjct: 202 LPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVLIRNELISNNASNKA 260

Query: 178 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM 237
            KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAYSYWGPKAGYNIYHM
Sbjct: 261 SKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAYSYWGPKAGYNIYHM 320

Query: 238 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL 297
           +NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFLGAI C  +FCL  L
Sbjct: 321 NNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFLGAIFCFISFCLKGL 380

Query: 298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL 357
           YGF+ALF+VGELLVFATQAPVNYVCLH V+PSLR LSMA+STV+IHIFGDVPSSPLVG+L
Sbjct: 381 YGFIALFSVGELLVFATQAPVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGIL 440

Query: 358 QDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGN 417
           QDHVNNWR+TTL LTS+ FLA+GIWF+G+FL S+D+F  D ENQ S+ SKA MKPLLEG 
Sbjct: 441 QDHVNNWRETTLILTSVLFLASGIWFLGVFLDSVDRFKLDSENQ-SVQSKATMKPLLEGE 499

Query: 418 GDNL 421
            D +
Sbjct: 500 DDEM 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/424 (71%), Positives = 348/424 (82%), Gaps = 7/424 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEAS
Sbjct: 107 MVGLLVASPIFASLAKSFNPFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEAS 166

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAILM
Sbjct: 167 FISLAAPFIDDNAPVAQKTAWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILM 226

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKA--QVVASVSE-----GSEASNLNDHVSEDISDQA 173
           LPF VL F++KPLQLKGFAPAES KA   V  +VSE      S     N  V E+++D++
Sbjct: 227 LPFVVLGFLMKPLQLKGFAPAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDKS 286

Query: 174 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 233
            + S  S   +  LNQ S+F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN
Sbjct: 287 PKPSCMSRYATFSLNQFSRFIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 346

Query: 234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 293
           IY+M+NADM+FGG+TIVCGI+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AFC
Sbjct: 347 IYNMTNADMIFGGITIVCGILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAFC 406

Query: 294 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL 353
             S+Y FLALF +GELLVFATQ PVNY+CLH VKPS+R LSMA+S VSIHIFGDVPSSPL
Sbjct: 407 FKSMYVFLALFAIGELLVFATQGPVNYICLHCVKPSMRPLSMAMSIVSIHIFGDVPSSPL 466

Query: 354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPL 413
           VGVLQD +NNWR T L LT+I F AA IWF+GIFLKS+DKFNE+ E+Q+++  ++N  PL
Sbjct: 467 VGVLQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKFNEESEHQVAVTDRSNTTPL 526

Query: 414 LEGN 417
           LEG 
Sbjct: 527 LEGK 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 345/420 (82%), Gaps = 8/420 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 80  MVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIAICRMLVGVGEAS 139

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFWGEAI M
Sbjct: 140 FISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFNWRVAFWGEAIFM 199

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +  DQA  R  K 
Sbjct: 200 LPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE--DQAFIRGSKL 254

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHMSNA
Sbjct: 255 --TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMSNA 312

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           D++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI CL AF    L+GF
Sbjct: 313 DLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFCLVAFLFKGLFGF 372

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           + LF+VGELL+FATQAPVNYV L  VKPSLR LSMAISTVSIHIFGDVPS+PLVGVLQDH
Sbjct: 373 IILFSVGELLIFATQAPVNYVSLRCVKPSLRPLSMAISTVSIHIFGDVPSAPLVGVLQDH 432

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDS-KANMKPLLEGNGD 419
           +N+WRKT++ LTSIFFLAAG+WF+G FLKS D FN+D E   S  + +   KPLLEG  D
Sbjct: 433 INDWRKTSICLTSIFFLAAGVWFIGTFLKSDDLFNKDDEEDESTTTLRGVRKPLLEGIND 492

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/420 (71%), Positives = 343/420 (81%), Gaps = 8/420 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSFDFWSIAICRMLVGVGEAS
Sbjct: 80  MVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAICRMLVGVGEAS 139

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+VGS  NWR AFW EAILM
Sbjct: 140 FISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNWRVAFWVEAILM 199

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           LPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +D ++ED   QA  +  KS
Sbjct: 200 LPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-DDTLAED---QALLKGSKS 254

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
              S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGAYSYWGPKAGY+IYHM+NA
Sbjct: 255 --TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGAYSYWGPKAGYSIYHMNNA 312

Query: 241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF 300
           D++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATFLGAI CL AF   SL GF
Sbjct: 313 DLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATFLGAIFCLIAFLFKSLSGF 372

Query: 301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH 360
           +  F++GELL+F TQAPVNYV L  VKPSLR LSMAISTVSIH+FGDVPSSPLVGVLQDH
Sbjct: 373 IVFFSMGELLIFVTQAPVNYVSLRCVKPSLRPLSMAISTVSIHVFGDVPSSPLVGVLQDH 432

Query: 361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLEGNGDN 420
           +N+WRKT L LTSIFFLAA IWF+GIFLKS D +++D E Q +      + PLL+G+ D 
Sbjct: 433 INDWRKTALCLTSIFFLAAVIWFIGIFLKS-DVYDKDDEEQSATTRGGKLTPLLDGSSDT 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 343/421 (81%), Gaps = 6/421 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEAS
Sbjct: 98  MVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEAS 157

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ M
Sbjct: 158 FISLAAPFIDDNAPVTQKTAWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLFM 217

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQAS 174
           +PFA+    +KPLQL+GF PA+S K    + VAS  +  EASN  D    +  ++ D++S
Sbjct: 218 VPFAISGLFMKPLQLRGFVPADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKSS 277

Query: 175 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 234
               KS   ++   + S+F  D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI
Sbjct: 278 NDHSKSKSVTQIFEKFSRFLNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 337

Query: 235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL 294
           YHM++AD++FGG+TIVCGIVGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF  
Sbjct: 338 YHMTDADLIFGGITIVCGIVGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFLF 397

Query: 295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV 354
            S+YGFLALF++GELLVFATQ PVNYVCL  VKPSLR LSMA+STV IHIFGDVPSSPLV
Sbjct: 398 RSMYGFLALFSIGELLVFATQGPVNYVCLRCVKPSLRPLSMAMSTVVIHIFGDVPSSPLV 457

Query: 355 GVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLL 414
           GVLQD++NNWR T L LTSI FLAAGIWF+GIFL ++D+F+ED E+Q+S   ++N  PLL
Sbjct: 458 GVLQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRFDEDSEHQVSNVERSNTMPLL 517

Query: 415 E 415
           +
Sbjct: 518 Q 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/423 (69%), Positives = 344/423 (81%), Gaps = 8/423 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAKS NPFRLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEAS
Sbjct: 97  MVGLLVASPIFASLAKSVNPFRLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEAS 156

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM
Sbjct: 157 FISLAAPFIDDNAPVSQKTAWLAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILM 216

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQAS 174
            PFA+L FV+KPLQLKGFAP +S KA  + +V SE S+  ASN  D    +  +  D++S
Sbjct: 217 SPFAILGFVMKPLQLKGFAPTDSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSS 276

Query: 175 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI 234
               +S  +   L+Q S+F +D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+I
Sbjct: 277 HEPSRS--KCTILDQFSRFLKDMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSI 334

Query: 235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL 294
           Y+M+NADMMFGG+T+VCGI+GT++GGF+LD M  TISNAFKLLS ATF+G   C  AF  
Sbjct: 335 YNMTNADMMFGGITVVCGILGTVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLF 394

Query: 295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV 354
            S YGFLALF VGELLVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLV
Sbjct: 395 KSQYGFLALFAVGELLVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLV 454

Query: 355 GVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLL 414
           G++QD +NNWR T L LT+IFF AA IWF+GIFL S+D+FNED E+++S   + +  PLL
Sbjct: 455 GLMQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRFNEDSEHEVSSVERTSTAPLL 514

Query: 415 EGN 417
           E N
Sbjct: 515 EEN 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164805|ref|XP_003580172.1| PREDICTED: protein spinster homolog 1-like [Brachypodium distachyon]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/422 (68%), Positives = 343/422 (81%), Gaps = 8/422 (1%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           MVGLLVASPIFASLAK HNPFRLIGVGL VWT ATAGCG SFDFWSI ICRMLVGVGEAS
Sbjct: 177 MVGLLVASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSFDFWSITICRMLVGVGEAS 236

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
           FISLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG+VG  L+WR AFWGE+ILM
Sbjct: 237 FISLAAPFIDDNAPVAQKTAWLAMFYMCIPTGIALGYVYGGLVGKRLHWRAAFWGESILM 296

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN------DHVSEDISDQAS 174
           LPF +L FVIKPL+LKGF   +  K        E  + +N N         +E ++++  
Sbjct: 297 LPFVILGFVIKPLELKGFTHNKKTKEYGPMLNPELRDETNNNGIKQGVPAGTEGLTEKIP 356

Query: 175 ER-SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 233
           +R S  S G+ + + ++  F QD K LLQEKVYV+NVLGYIAYNFVIGAYSYWGPKAG +
Sbjct: 357 QRFSFSSFGK-KVMIEIGHFGQDMKELLQEKVYVINVLGYIAYNFVIGAYSYWGPKAGQD 415

Query: 234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC 293
           IY M++AD+MFGG+TIVCGI GT++GGFILD++ +TISNAFKLLS ATFLGAI C +AFC
Sbjct: 416 IYKMASADLMFGGITIVCGIFGTLAGGFILDKIESTISNAFKLLSGATFLGAIFCFSAFC 475

Query: 294 LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL 353
             SLYGF+  F+VGELLVFATQAPVNY+CLH VKPSLR LSMA+STVSIHIFGDVPSSPL
Sbjct: 476 FKSLYGFIPFFSVGELLVFATQAPVNYICLHCVKPSLRPLSMAMSTVSIHIFGDVPSSPL 535

Query: 354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPL 413
           VG+LQD+++NWR T L LTSI F+A   WF+GIF++S+D+FNE  E+ +    ++N++PL
Sbjct: 536 VGLLQDNIHNWRATALTLTSILFIAVIFWFIGIFVRSVDRFNEQSEHGLPAAERSNLRPL 595

Query: 414 LE 415
           L+
Sbjct: 596 LD 597

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088668|emb|CBI38036.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/406 (71%), Positives = 331/406 (81%), Gaps = 7/406 (1%)

Query: 17  SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 76
           S NPFRLIGVGLSVWT A  GCG SF+FWSI ICRM VGVGEASFISLAAPFIDDNAPV 
Sbjct: 11  SVNPFRLIGVGLSVWTVAAVGCGFSFNFWSITICRMFVGVGEASFISLAAPFIDDNAPVA 70

Query: 77  QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 136
           QKTAWL++FYMCIP+G+A+GYVYGG+VG H +WRYAFWGEAILMLPFA+L F++KPLQLK
Sbjct: 71  QKTAWLAIFYMCIPSGIAVGYVYGGLVGDHFSWRYAFWGEAILMLPFAILGFIMKPLQLK 130

Query: 137 GFAPAESGKAQV----VASVSEGSEASNLND---HVSEDISDQASERSIKSIGESRFLNQ 189
           GFAPA+S K Q     +A   + +EA N  D    +  D   Q+S     S   S  +NQ
Sbjct: 131 GFAPAKSKKTQTAVETIAQEGQDTEALNGKDGALSMKADSKYQSSNTPSGSTISSNNVNQ 190

Query: 190 LSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI 249
            S+F +D KVLL +KVYVVNVLGYI+YNFVIGAYSYWGPKAGYNIY+MS AD++FGG+TI
Sbjct: 191 FSRFFKDMKVLLCDKVYVVNVLGYISYNFVIGAYSYWGPKAGYNIYNMSKADLIFGGITI 250

Query: 250 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL 309
           VCGI+GTI+GG ILD M +TISNAFKLLS ATF GAI C +AFC  SLYGFLALF++GEL
Sbjct: 251 VCGILGTIAGGCILDLMTSTISNAFKLLSTATFFGAICCFSAFCFKSLYGFLALFSIGEL 310

Query: 310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL 369
           LVFATQ PVNYVCLH VKPSLR LSMA+STV+IHIFGDVPSSPLVGVLQD VNNWR+T L
Sbjct: 311 LVFATQGPVNYVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSSPLVGVLQDSVNNWRETAL 370

Query: 370 ALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMKPLLE 415
            LTSI FLAAGIWF+GIFL  +D+FNE+ E+  +   K+N  PLLE
Sbjct: 371 ILTSILFLAAGIWFIGIFLHGVDRFNEESEHHATRIDKSNTTPLLE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.529	0.460	0.641	2.3e-131
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.878	0.725	0.614	3.3e-118
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.938	0.802	0.543	7.6e-112
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.287	0.242	0.302	1.5e-14
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.199	0.159	0.377	1.6e-14
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.199	0.146	0.377	2.4e-14
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.199	0.159	0.377	4.2e-14
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.304	0.211	0.303	5e-14
UNIPROTKB|Q08DX7	528	SPNS1 "Protein spinster homolo	0.199	0.159	0.377	6.9e-14
UNIPROTKB|E2RBY9	561	SPNS1 "Uncharacterized protein	0.199	0.149	0.377	9e-14

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 145/226 (64%), Positives = 171/226 (75%)

Query:   191 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXX 250
             S   +D K+LL +KVYV N+LGYIAYNFV+GAYSYWGPKAGYNIY M NADM+F      
Sbjct:   259 SAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSYWGPKAGYNIYKMENADMIFGGVTVV 318

Query:   251 XXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 310
                        ILD M ATISNAFK+LS +TF+GAI C  AFC  S+Y FLALF VGELL
Sbjct:   319 CGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGAIFCFAAFCFKSMYAFLALFAVGELL 378

Query:   311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 370
             VFATQ PVN++ LH VKPSLR L+MA+STVSIHIFGDVPSSPLVGVLQD+VNNWR T+L 
Sbjct:   379 VFATQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLV 438

Query:   371 LTSIFFLAAGIWFVGIFLKSIDKFNEDGE-NQISLDSKANMKPLLE 415
             LT + F AA IW +GIFL S+D++NED E + ++ +S A   PLL+
Sbjct:   439 LTFVLFPAAAIWSIGIFLNSVDRYNEDSEPDAVTRESTA--APLLQ 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 236/384 (61%), Positives = 273/384 (71%)

Query:    22 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 81
             RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  QK AW
Sbjct:   128 RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQEQKAAW 187

Query:    82 LSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 141
             L +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLKG   +
Sbjct:   188 LGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLKG---S 244

Query:   142 ESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL 201
             E+ K               +++ +  D  + + E S  S   + F    + F++D KVL 
Sbjct:   245 ETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKDMKVLY 294

Query:   202 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXF 261
             +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F                F
Sbjct:   295 KEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGTLSGGF 354

Query:   262 ILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV 321
             ILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQAPVNYV
Sbjct:   355 ILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYV 414

Query:   322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI 381
             CLH VKPSLR LSMAISTV+IHIFGDVPSSPLVG++QDH+N+WRKTTL LTSI FLAA I
Sbjct:   415 CLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAI 474

Query:   382 WFVG-IFLKSIDKFNEDGENQISL 404
             WF+G I L S    +E    QI L
Sbjct:   475 WFIGKINLNSFYSNDESFLVQIKL 498

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 224/412 (54%), Positives = 279/412 (67%)

Query:     1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
             MVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++FW IA+ RM VGVGEAS
Sbjct:    90 MVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYNFWMIAVFRMFVGVGEAS 149

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILM 120
             FISLAAP+IDD+APV +K  WL +FYMCIP              +HL WR+AF+ EAI M
Sbjct:   150 FISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYIGNHLGWRWAFYIEAIAM 209

Query:   121 LPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIK 179
               F +L+F IKP  QLKGFA  +S K              ++      D   +AS+   K
Sbjct:   210 AVFVILSFCIKPPQQLKGFADKDSKKPST-----------SIETVAPTDA--EASQIKTK 256

Query:   180 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN 239
             +  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIGAYSYWGPKAG+ IY M N
Sbjct:   257 T-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKN 313

Query:   240 ADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
             ADM+F                ++LD++ AT+SN FKLL+A+T LGA  C TAF + ++Y 
Sbjct:   314 ADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTLLGAAFCFTAFLMKNMYA 373

Query:   300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD 359
             F+ALF VGE+L+FA QAPVN+VCLH V+P+LR LSMA STV IHI GDVPSSPL G +QD
Sbjct:   374 FIALFAVGEILIFAPQAPVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQD 433

Query:   360 HVNNWRKTTLALTSIFFLAAGIWFVGIFLKSIDKFNEDGENQISLDSKANMK 411
             H+ NWRK+TL +TSI FLAA IW +GIF+ S+D+ NE  E+    + K   K
Sbjct:   434 HLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRSNEVSEDDEVEEDKLESK 485

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
 Identities = 39/129 (30%), Positives = 59/129 (45%)

Query:     8 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 63
             +P+F  L   ++   ++ VGL +W   T G  SSF     FW +   R LVG GEAS+ +
Sbjct:   101 APVFGYLGDRYDRKLIMIVGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYST 158

Query:    64 LAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILML 121
             +A   I D     ++T  +S FY+ IP                  +WR+A     A+  L
Sbjct:   159 IAPTIIGDLFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGL 218

Query:   122 PFAVLAFVI 130
                +L F+I
Sbjct:   219 GLLLLVFLI 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   154 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVGVGEAS 211

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   212 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
 Identities = 41/135 (30%), Positives = 65/135 (48%)

Query:     1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DF-WSIAICRMLVGVGE 58
             ++  +V +PIF  L   ++   ++ VG+ +W+  T   GS    F W IA  R LVG+GE
Sbjct:   160 VISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTL-LGSFMKQFGWFIAF-RALVGIGE 217

Query:    59 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL--NWRYAFWGE 116
             AS+ ++A   I D      ++  L++FY  IP              +HL  +WR+A    
Sbjct:   218 ASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWRWALRVT 276

Query:   117 AILMLPFAVLAFVIK 131
              IL +    L  +IK
Sbjct:   277 PILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

UNIPROTKB|Q08DX7 SPNS1 "Protein spinster homolog 1" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 6.9e-14, Sum P(3) = 6.9e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   109 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEAS 166

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   167 YSTIAPTLIADLFVADQRSRMLSVFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2RBY9 SPNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:     5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEAS 60
             +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVGVGEAS
Sbjct:   142 MVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPRERFWLLLLTRGLVGVGEAS 199

Query:    61 FISLAAPFIDDNAPVPQKTAWLSMFYMCIP 90
             + ++A   I D     Q++  LS+FY  IP
Sbjct:   200 YSTIAPTLIADLFVADQRSRMLSVFYFAIP 229

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.6795	0.9121	0.7933	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-12
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-10
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	7e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00805	633	TIGR00805, oat, sodium-independent organic anion t	0.002
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.002
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 33/133 (24%), Positives = 59/133 (44%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
            +G  + S +   L+      R++ +GL ++   +     +   W + + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
               AA  I +  P  ++   L +F      G  LG + GG++   L WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 121 LPFAVLAFVIKPL 133
           L  A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 62/345 (17%), Positives = 113/345 (32%), Gaps = 47/345 (13%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
            +G  +A P+   L+      R++ +GL ++         +   W + + R+L G+G  +
Sbjct: 42  SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGA 101

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
               AA  I D  P  ++   L +       G ALG + GG++ S   WR AF   AIL 
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILA 161

Query: 121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 180
           L  AVLA ++ P                                 S+         +   
Sbjct: 162 LLAAVLAALLLP----------------------------RPPPESKRPKPAEEAPAPLV 193

Query: 181 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA 240
                 L                   +  +L  + + F   A   + P     +  +S  
Sbjct: 194 PAWKLLLRD---------------PVLWLLLALLLFGFAFFALLTYLPLYQ-EVLGLSAL 237

Query: 241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG 299
              +  G+  + G +G +  G + D++G        LL        +  L +   SSL+ 
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGL-ALLSLTESSLWL 296

Query: 300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI 344
            +AL  +G          +N +         R  +  +   +  +
Sbjct: 297 LVALLLLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 2   VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L G G A  
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML 121
           +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F   AIL L
Sbjct: 69  LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128

Query: 122 -PFAVLAFVIKP 132
             F +LAF++  
Sbjct: 129 AAFILLAFLLPE 140

Length = 141

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 52  MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 102
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 103 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 149
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 209
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 267
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 268 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 307
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 61/333 (18%), Positives = 118/333 (35%), Gaps = 40/333 (12%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           ++G+   +  F  LA      R++   + +++  T  C  + +   + I R L G+G   
Sbjct: 62  LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFW-GEAIL 119
            +      + + AP   +   + + +   P G A+G    G +     WR  F+ G    
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181

Query: 120 MLPFAVLAFV----IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 175
           +L   +L       I  L  K          + + +       +     + E  + Q ++
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKR-----PETVRRIVNAIAPQMQAEAQSALPEQKATQGTK 236

Query: 176 RSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVLGYIAYNFVIGAYSYWGPK--- 229
           RS+                   K L Q    ++ V+  L Y      +   + W PK   
Sbjct: 237 RSVF------------------KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV 278

Query: 230 -AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 288
             G++     +     G +    G++G+I  G++ D++G  ++    LL A   +   S 
Sbjct: 279 ELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334

Query: 289 LTAFCLSSLYGFLA-LFTVGELLVFATQAPVNY 320
           L +  L  L G +A  F  G          + Y
Sbjct: 335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY 367

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 70/394 (17%), Positives = 133/394 (33%), Gaps = 70/394 (17%)

Query: 2   VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF 61
           +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L G+    F
Sbjct: 59  LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118

Query: 62  ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML 121
            S+AA       P  ++   L++ +  +     LG   G  +G    WR  F   A+L  
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL-- 176

Query: 122 PFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI 181
             A+LA +   L  K   P+E   +                                   
Sbjct: 177 --ALLALL---LLWKLLPPSEISGS----------------------------------- 196

Query: 182 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD 241
                   L    +   VLL     +   L    +      Y+Y  P    ++   S + 
Sbjct: 197 LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-SVAGFSVSA 248

Query: 242 -----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS 296
                + FG    + G +G + GG + D+         + L AA  L A++ L A   + 
Sbjct: 249 VSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA-LLALTFTG 297

Query: 297 LYGFLALFTVGELLVFATQAPVNYVCLHS-VKPSLRALSMAISTVSIHIFGDVPSSPLVG 355
               LAL  +       + A        + + P    L+ +++  + ++ G    + L G
Sbjct: 298 ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNL-GIALGAALGG 356

Query: 356 VLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLK 389
           ++ D +      T  + +   L A +  +    K
Sbjct: 357 LVLDALGYA--ATGWVGAALLLLALLLALLSARK 388

Length = 394

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 53/273 (19%), Positives = 91/273 (33%), Gaps = 44/273 (16%)

Query: 30  VWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI 89
           +W   T     +  + S+ I R+L+G  EA F       +    P  ++   +S+F    
Sbjct: 68  IWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQ 127

Query: 90  PTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLPFAVLAFVIKPLQLKGFAPAESGKAQ 147
             G  +G    G +  H +W++AF  E +L  +     L F+  P Q   +   E     
Sbjct: 128 GLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIV 187

Query: 148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV 207
           V   ++E                      + K               Q  ++L   +V+ 
Sbjct: 188 VGGLLAEQQGKGP---------------STPKK-------------YQIKELLKDRRVWG 219

Query: 208 VNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFI 262
           +  LG    N  +G +  W P     + G +I            +  + G +G I GG +
Sbjct: 220 L-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG----FMASLPGIVGFIGMILGGRL 274

Query: 263 LDQMGATISNAFKLLSAATFLGAISCLTAFCLS 295
            D     +    K L  A     I+ L    L 
Sbjct: 275 SD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   VGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           +G ++ + +   L+ +      L+ +GL +          +     + +  +L+G G   
Sbjct: 222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF 281

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
                     + AP   +     +F      G ALG +  G++     +   F   A L 
Sbjct: 282 AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341

Query: 121 LPFAVLAFVIK 131
           L  A+L  ++ 
Sbjct: 342 LLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGA 268
            L +   +F       + P     +  +S A+  +   +  + GI+G + GG + D++G 
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG- 239

Query: 269 TISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP 328
                  LL     L A+  L      SL   L    +    +      +  +      P
Sbjct: 240 ---RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV 384
             R  +  +      + G     PL+  L      +    L L ++  LAA +  +
Sbjct: 297 EARGTASGLFNTFGSLGG--ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 293 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP 352
           C +SL  FL LF     + F T  P+  V L  V P  R+L++ +  + + +FG +P+  
Sbjct: 514 CATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEERSLAIGLQWLCMRVFGTIPAPI 573

Query: 353 LVGVLQDH 360
           L G+L D 
Sbjct: 574 LFGLLIDV 581

The Organo Anion Transporter (OAT) Family (TC 2.A.60)Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 30/132 (22%), Positives = 60/132 (45%)

Query: 1   MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 60
           M+   ++ P+   LAK     RL  +    +T  +  CG + +   + I R++ G G   
Sbjct: 47  MLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGP 106

Query: 61  FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 120
            I L+   + +  P  ++   ++++ + +    ALG   GG +  + +WR+ F     + 
Sbjct: 107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIG 166

Query: 121 LPFAVLAFVIKP 132
           +   V+AF I P
Sbjct: 167 IIVVVVAFFILP 178

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 38  CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 97
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 98  VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 133
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10504	471	putative transporter; Provisional	99.98
PRK09874	408	drug efflux system protein MdtG; Provisional	99.98
KOG2533	495	consensus Permease of the major facilitator superf	99.98
PRK03893	496	putative sialic acid transporter; Provisional	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.98
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.98
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.98
TIGR00895	398	2A0115 benzoate transport.	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK12382	392	putative transporter; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK10054	395	putative transporter; Provisional	99.97
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
PTZ00207	591	hypothetical protein; Provisional	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.9
KOG3626	735	consensus Organic anion transporter [Secondary met	99.9
PRK09669	444	putative symporter YagG; Provisional	99.89
PRK10429	473	melibiose:sodium symporter; Provisional	99.89
PF13347	428	MFS_2: MFS/sugar transport protein	99.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.86
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.85
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.85
PRK11462	460	putative transporter; Provisional	99.85
PRK09848	448	glucuronide transporter; Provisional	99.84
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.81
COG2211	467	MelB Na+/melibiose symporter and related transport	99.79
KOG2563	480	consensus Permease of the major facilitator superf	99.77
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.72
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.56
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.5
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
PRK10054	395	putative transporter; Provisional	99.48
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.47
PRK10642	490	proline/glycine betaine transporter; Provisional	99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.46
PRK05122	399	major facilitator superfamily transporter; Provisi	99.44
TIGR00900	365	2A0121 H+ Antiporter protein.	99.43
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.42
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.41
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.41
PRK10489	417	enterobactin exporter EntS; Provisional	99.4
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.4
PRK09874	408	drug efflux system protein MdtG; Provisional	99.38
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.38
PRK09528	420	lacY galactoside permease; Reviewed	99.38
PRK12382	392	putative transporter; Provisional	99.38
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.37
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.36
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.34
PRK10504	471	putative transporter; Provisional	99.34
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.33
PRK03699	394	putative transporter; Provisional	99.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.33
TIGR00895	398	2A0115 benzoate transport.	99.33
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.32
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.32
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.31
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.29
PRK10091	382	MFS transport protein AraJ; Provisional	99.29
PRK03545	390	putative arabinose transporter; Provisional	99.29
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.29
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.29
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.28
PRK12307	426	putative sialic acid transporter; Provisional	99.27
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.27
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.26
PRK15011	393	sugar efflux transporter B; Provisional	99.25
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
PRK11043	401	putative transporter; Provisional	99.25
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.24
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.23
PRK03893	496	putative sialic acid transporter; Provisional	99.22
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.21
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.2
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.19
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.19
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.19
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.18
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.18
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.18
PRK03633	381	putative MFS family transporter protein; Provision	99.18
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
KOG2615	451	consensus Permease of the major facilitator superf	99.16
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.15
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.14
PRK09705	393	cynX putative cyanate transporter; Provisional	99.12
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.12
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.11
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.11
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.11
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.11
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.1
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.09
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.06
TIGR00898	505	2A0119 cation transport protein.	99.06
KOG3810	433	consensus Micronutrient transporters (folate trans	99.05
KOG3762	618	consensus Predicted transporter [General function	99.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.04
PRK09952	438	shikimate transporter; Provisional	99.02
PRK10133	438	L-fucose transporter; Provisional	99.02
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.02
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.01
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
PTZ00207	591	hypothetical protein; Provisional	98.99
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.97
PRK11010	491	ampG muropeptide transporter; Validated	98.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.94
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.93
PRK15075	434	citrate-proton symporter; Provisional	98.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.92
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.9
TIGR00805	633	oat sodium-independent organic anion transporter.	98.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.85
TIGR00901	356	2A0125 AmpG-related permease.	98.83
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.83
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.79
KOG0637	498	consensus Sucrose transporter and related proteins	98.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.69
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.67
COG0477	338	ProP Permeases of the major facilitator superfamil	98.66
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.65
KOG2532	466	consensus Permease of the major facilitator superf	98.65
KOG3762	618	consensus Predicted transporter [General function	98.65
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.64
KOG2533	495	consensus Permease of the major facilitator superf	98.63
KOG0569	485	consensus Permease of the major facilitator superf	98.63
PRK09848	448	glucuronide transporter; Provisional	98.61
PRK09669	444	putative symporter YagG; Provisional	98.58
PRK11462	460	putative transporter; Provisional	98.58
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.57
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.56
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.52
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.5
KOG0254	513	consensus Predicted transporter (major facilitator	98.44
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.44
PF13347	428	MFS_2: MFS/sugar transport protein	98.42
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.41
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.4
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.37
COG2211	467	MelB Na+/melibiose symporter and related transport	98.35
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.34
COG3202	509	ATP/ADP translocase [Energy production and convers	98.26
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.26
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.25
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.24
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.23
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.12
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.1
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.04
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.94
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.86
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.71
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.69
KOG3880	409	consensus Predicted small molecule transporter inv	97.61
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.48
KOG2563	480	consensus Permease of the major facilitator superf	97.4
PF12832	77	MFS_1_like: MFS_1 like family	97.37
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.31
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.0
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.94
KOG0637	498	consensus Sucrose transporter and related proteins	96.91
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.75
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.73
COG0477	338	ProP Permeases of the major facilitator superfamil	96.51
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.23
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.09
PRK03612	521	spermidine synthase; Provisional	95.83
KOG3626	735	consensus Organic anion transporter [Secondary met	95.64
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.45
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.36
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.26
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.12
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.91
PRK03612	521	spermidine synthase; Provisional	94.89
PF12832	77	MFS_1_like: MFS_1 like family	94.02
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.14
KOG3097	390	consensus Predicted membrane protein [Function unk	91.1
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	90.83
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	89.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.51
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	82.72
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	81.31
KOG3880	409	consensus Predicted small molecule transporter inv	80.8
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.36

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-38  Score=268.83  Aligned_cols=352  Identities=16%  Similarity=0.161  Sum_probs=278.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +.|.++-.+.|.++||.+.|+.+..++++.++.+++++++++.+.+.++.+++|..+|..+|++...+..|++++|||+.
T Consensus        75 i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~  154 (448)
T COG2271          75 ITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTW  154 (448)
T ss_pred             HHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCce
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHH--HHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~--~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      .++++++.++|..+.|++.  +.+..+.+||..|++.++++++++++.++..+++|+....++-++...+          
T Consensus       155 ~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d----------  224 (448)
T COG2271         155 WSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD----------  224 (448)
T ss_pred             EEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC----------
Confidence            9999999999999999999  8898888999999999999999999999888776655443332222100          


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                              ..+...+++..+.-         .....-.+.+++||.+|.+.++..+.+..-+++..|.|.|+.|..+++.
T Consensus       225 --------~~e~~~~~~~~~~l---------s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~  287 (448)
T COG2271         225 --------PLEIYEEEKENEGL---------TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSL  287 (448)
T ss_pred             --------chhhhhhhccCCCc---------cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH
Confidence                    00000000000000         0001235678999999999999999999999999999999999999997


Q ss_pred             hhHHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHhcccc
Q 014646          240 ADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ..+.. .++.-+++++|++++|+++||+-+.++.  ...+++.+...++.+.....+  +.+...+++.+.|+...+...
T Consensus       288 ~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm  365 (448)
T COG2271         288 VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM  365 (448)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence            66643 4777899999999999999998533221  333344444444444444444  346667777778887777776


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .......|..|++..|++.|+...+.+.+|...+....|++.|.+| |...|++..+..+++.++++
T Consensus       366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHH
Confidence            6777788999999999999999888888798999989999999865 87888877777666665554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.2e-35  Score=276.96  Aligned_cols=335  Identities=11%  Similarity=0.040  Sum_probs=222.9

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHH--------HHHHHHHhhhhhhhhcccccccccccC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.+++++.|+++||+|||+++.+++++++++++++++++|+++        ++++|+++|++.|..++...+++.|++
T Consensus        68 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~  147 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS  147 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC
Confidence            567899999999999999999999999999999999999999875        789999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccccc
Q 014646           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      |+++|+++.++...+..+|..+++.+...+.        ..+|||++|++.+++.++ .++.....||++++....++.+
T Consensus       148 p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~  226 (490)
T PRK10642        148 PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLE  226 (490)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh
Confidence            9999999999999988888888887665443        257999999997765543 3333444566544311000000


Q ss_pred             chhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhch-hh-HHHHHHHHHHHHHHHHHH
Q 014646          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-KV-YVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~~  223 (421)
                      ..            +.     +..       .+++             ..++++++++ +. ........++....++.+
T Consensus       227 ~~------------~~-----~~~-------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (490)
T PRK10642        227 QG------------DR-----EGL-------QDGP-------------KVSFKEIATKHWRSLLTCIGLVIATNVTYYML  269 (490)
T ss_pred             hh------------cc-----ccc-------cccc-------------cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            00            00     000       0000             0122333332 22 222222234455667788


Q ss_pred             HHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHH-HH--HHHHhhchhHH
Q 014646          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI-SC--LTAFCLSSLYG  299 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~  299 (421)
                      ..|.|.|+++..+.+.... .......++.+++.++.|+++||+|||     +.+........+ ..  +.....++...
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-----PFVILGSVALFVLAIPAFILINSNVIGL  344 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            8899999988777765433 333555677888899999999999998     555444332221 11  11122223333


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      ..+...+.+++.+...+....+..+.+|++.|+++.|+.+..... ++.++|.+.+++.+..+++...+++.....+++.
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            344444445554555555667778889999999999986555555 4567899999998866544444444443333333


Q ss_pred             H
Q 014646          380 G  380 (421)
Q Consensus       380 ~  380 (421)
                      +
T Consensus       424 ~  424 (490)
T PRK10642        424 I  424 (490)
T ss_pred             H
Confidence            3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-35  Score=254.63  Aligned_cols=324  Identities=19%  Similarity=0.221  Sum_probs=260.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++|+...+.||+.||++++..+.++.++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|+++
T Consensus        59 l~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~A  138 (394)
T COG2814          59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRA  138 (394)
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..++.++|.+++.++.+.+|||..|++.+.++++..+..+..+|  ++.  .+++.+..              
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~--~~~~~~~~--------------  200 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE--ISGSLPGP--------------  200 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--CCCCCCcc--------------
Confidence            999999999999999999999999999999999999999999888888888  111  11111100              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++..+++|+|.++...+..++...+.+...+|+..++++..+.+...
T Consensus       201 --------------------------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~  248 (394)
T COG2814         201 --------------------------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA  248 (394)
T ss_pred             --------------------------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH
Confidence                                            122446789999999999889998999999999999999999988755


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHH-HHHHHhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .....+++++++|+.++|++.|| +.+     +.+.....+.... ..+.....+.+...+...+.++..........
T Consensus       249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~  322 (394)
T COG2814         249 VSLVLLAFGIAGFIGNLLGGRLADR-GPR-----RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQ  322 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHH
Confidence            5 44577889999999999999999 655     5555554444443 33444444555555555555444444433333


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhh
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      ....+ .-|+.+..+.+++....|. |..+|..++|.+.|+.| +....++.+...+++..+.+.
T Consensus       323 ~~~a~-~~p~~~~~a~sl~~aa~nl-gia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         323 TRLAR-LAPDAADLAGSLNVAAFNL-GIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHhcc-cCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHH
Confidence            34444 4468899999999888887 99999999999999955 777777777776666665553

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.4e-35  Score=269.96  Aligned_cols=350  Identities=14%  Similarity=0.132  Sum_probs=241.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|+++
T Consensus        69 ~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~  148 (434)
T PRK11663         69 ITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGW  148 (434)
T ss_pred             HHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+.++|.++++.+++.+.+.+|||+.|++.+++.++..+...+..||++++...++..++..            +
T Consensus       149 ~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~  216 (434)
T PRK11663        149 WAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH------------D  216 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc------------c
Confidence            9999999999999999999999999999999999988777666555555565443211111100000            0


Q ss_pred             Cccccccchhhhhhhhhcccccchhhhhhhhhhhhh-HhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDT-KVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                        . .+   ..++.+ ++.       .+.+   +.+ +..++++.++...+..++.......+..|+|.|+.+..+.+..
T Consensus       217 --~-~~---~~~~~~-~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~  279 (434)
T PRK11663        217 --A-LE---LAQQQE-GAG-------LSRK---EILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLV  279 (434)
T ss_pred             --c-cc---cchhcc-ccC-------CChh---hhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence              0 00   000000 000       0000   111 1356788888887777777777778888999999887788765


Q ss_pred             hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .. .......++++++.++.|++.||+.++.++................+......+...........+++.........
T Consensus       280 ~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  359 (434)
T PRK11663        280 TANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIG  359 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44 44566778899999999999999843321111111111111111111111122222222222222222221122234


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ....+..|++.|++++|+.+...+. |..++|.+.|++.|..| +...+...+++.+++.+..
T Consensus       360 ~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        360 MAAAECSHKEAAGAATGFVGLFAYL-GAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHHhcccHhhHHhHHHHHHHHHHH-HHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            4567778889999999999877776 88999999999999877 8788877777766655444

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.1e-34  Score=263.68  Aligned_cols=322  Identities=16%  Similarity=0.095  Sum_probs=242.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++..++++.+++++|++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        55 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~  134 (390)
T PRK03545         55 WVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQA  134 (390)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ++++..+.++|..++|++++.+.+++|||+.|++.+++.++..+..+...|+.++      +++..              
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~------~~~~~--------------  194 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS------EHSGS--------------  194 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC------CCcch--------------
Confidence            9999999999999999999999999999999999998877766665555454211      00000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++.++++++|.++......++..........+.+.++++..+.++..
T Consensus       195 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~  242 (390)
T PRK03545        195 --------------------------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENF  242 (390)
T ss_pred             --------------------------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccH
Confidence                                            012446678888776655555555555556677888888877777544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++++++.++.+++.||.++|     ...............+....++.+...+...+.+++.....+....
T Consensus       243 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        243 ATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4 344566778899999999999999876     4443333333333333333444455555555556655544455556


Q ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+.+.. ++.+++++|+.+...+. |..+||.+.|.+.|..| ++..+...+.+.+++.....
T Consensus       318 ~~~~~~-~~~~~~~~g~~~~~~~~-g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        318 KVLKLA-PDATDVAMALFSGIFNI-GIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHH
Confidence            666655 46889999999766665 88899999999999877 76777777766655555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.1e-34  Score=266.64  Aligned_cols=325  Identities=14%  Similarity=0.104  Sum_probs=220.3

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhH--------HHHHHHHHhhhhhhhhcccccccccccCC
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      +..++++++|+++||+|||+++..++++++++++++++++++.        .++++|+++|++.|..++...+++.|++|
T Consensus        75 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p  154 (432)
T PRK10406         75 MRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV  154 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC
Confidence            4458999999999999999999999999999999999999874        58899999999999999999999999999


Q ss_pred             CCCchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccc
Q 014646           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  146 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  146 (421)
                      +++|+++.++.+.+...|.++++.+...+.        +.+|||++|++.++++++... .....||++++    ++ + 
T Consensus       155 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~----~~-~-  227 (432)
T PRK10406        155 EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ----ET-R-  227 (432)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH----HH-h-
Confidence            999999999999998888888887765543        257999999998776654322 22222432111    00 0 


Q ss_pred             hhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHH-HHHHHHHHH
Q 014646          147 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY-NFVIGAYSY  225 (421)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  225 (421)
                      .                            . .+              ..++++++++++.+...+...+. ...++.+..
T Consensus       228 ~----------------------------~-~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (432)
T PRK10406        228 A----------------------------L-KE--------------AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTT  264 (432)
T ss_pred             h----------------------------h-cc--------------cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                            0 00              01345666777777665554443 566778889


Q ss_pred             HhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH-HH--Hh-hchhHHH
Q 014646          226 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TA--FC-LSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~  300 (421)
                      |+|.|+++..+.+..+. ....+......++.++.|+++||++||     +.+.....+..+... ..  .. .++....
T Consensus       265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-----TSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999988777775444 334555666677888889999999988     544433332222211 11  11 1222222


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      .....+..++.+...+....+..|.+|++.|+++.|+.+...+.+.+...|.+.+.+ +..|.+...+++.+...+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence            222222223333333445677889999999999999998766654344477777744 5556565555555555444444


Q ss_pred             Hhh
Q 014646          381 IWF  383 (421)
Q Consensus       381 ~~~  383 (421)
                      ..+
T Consensus       419 ~~~  421 (432)
T PRK10406        419 VSL  421 (432)
T ss_pred             HHH
Confidence            433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=3.5e-35  Score=267.70  Aligned_cols=347  Identities=16%  Similarity=0.195  Sum_probs=238.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...|....++.|++|+++|+++
T Consensus        54 ~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~  133 (412)
T TIGR02332        54 AAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARA  133 (412)
T ss_pred             HHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhc------ccchhHHHHHhHHHHHHHHHHHHhcccccccccCC-cccccchhhhcccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP-AESGKAQVVASVSE  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~  154 (421)
                      +++++.+.++|.++++.+++++.+      ..|||+.|++.++++++..++.+++.||++++... .+++++...    +
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~----~  209 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALK----E  209 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHH----H
Confidence            999999999999999999988763      46999999999998887777777777776532110 000000000    0


Q ss_pred             cccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 014646          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                      ..+....  +.++    ..... .+..         ......+++++ +|.++...+.+++.....+.+.+|+|.++++.
T Consensus       210 ~~~~~~~--~~~~----~~~~~-~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  272 (412)
T TIGR02332       210 MIDNDQL--TLEQ----PEGAF-AHAA---------MPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF  272 (412)
T ss_pred             HHHhccc--cccc----ccccc-cccc---------ccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0000000  0000    00000 0000         00011234444 47778777777888888888999999999873


Q ss_pred             -hccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHh
Q 014646          235 -YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF  312 (421)
Q Consensus       235 -~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (421)
                       .+.+.... .+.....++.+++.++.|+++||+++|+    ...............+....++.........+..++..
T Consensus       273 ~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  348 (412)
T TIGR02332       273 NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK----HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSF  348 (412)
T ss_pred             CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence             34554333 4457778889999999999999998762    22222222222222222222222222222222222222


Q ss_pred             ccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          313 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      ...+.......+.+|++.|+++.|+.+...+. |++++|.+.|.+.|..|+|...+.++++.
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~-g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       349 SAMAIFWTTPDQSISLQARAIAIAVINATGNI-GSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhHHHhhcccccchHHHHHHHHHHHHhhhh-hhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            22222233334567889999999999877776 99999999999999988888877766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=3e-35  Score=272.98  Aligned_cols=348  Identities=16%  Similarity=0.110  Sum_probs=243.3

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc-----cchhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++++++++.|+++||+|||+++..+.++++++.+..++     +++++.+++.|+++|++.+...|...+++.||+|++
T Consensus        75 ~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  154 (467)
T PRK09556         75 ITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR  154 (467)
T ss_pred             HHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence            578899999999999999999998888888777766554     689999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhccc---chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      +|+++++++..+.++|.++++++..++.+..   +||..|.+.+++.++.+++.+++.++.+++....++++      . 
T Consensus       155 ~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~------~-  227 (467)
T PRK09556        155 KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE------I-  227 (467)
T ss_pred             ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh------c-
Confidence            9999999999999999999999887766543   69999999888888777776666555332211100000      0 


Q ss_pred             ccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhh-hHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014646          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                        .++         ...++.. +.++++  .    .   ..+. .+..+++|.+|...+..++......+...|+|.|++
T Consensus       228 --~~~---------~~~~~~~-~~~~~~--~----~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~  286 (467)
T PRK09556        228 --FGE---------PISEEDK-ETESTD--M----T---KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAF  286 (467)
T ss_pred             --ccC---------ccchhhh-cccccc--C----c---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000         0000000 000000  0    0   0011 234678999999888888888888888999999999


Q ss_pred             HhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHH
Q 014646          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS--CLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      +.++.+..+. .......++.+++.++.|+++||+++|     +............  .+.....++.+...+..++.++
T Consensus       287 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  361 (467)
T PRK09556        287 QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-----RALVACIALALIIFTLGVYQHATSEYMYLASLFALGF  361 (467)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9888886554 444667788999999999999999987     3333222221111  1122222333333333344443


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh------------hhhchhhhhhHHHHHHHH
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD------------HVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~------------~~~~~~~~~~~~~~~~~~  377 (421)
                      +.............|.+|++.++++.|+.|...+..|..++|.+.|++.|            ..+ |...|.+..++.++
T Consensus       362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~  440 (467)
T PRK09556        362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIG  440 (467)
T ss_pred             HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHH
Confidence            33222222335666889999999999999888786577889999999999            334 88888877766666


Q ss_pred             HHHHhh
Q 014646          378 AAGIWF  383 (421)
Q Consensus       378 ~~~~~~  383 (421)
                      +.+..+
T Consensus       441 ~~~~~~  446 (467)
T PRK09556        441 CICLMA  446 (467)
T ss_pred             HHHHHH
Confidence            655544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=7.2e-35  Score=276.26  Aligned_cols=371  Identities=15%  Similarity=0.137  Sum_probs=255.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|++++++++|+++||+|||++++++++++++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.
T Consensus       213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~  292 (742)
T TIGR01299       213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEH  292 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcc-------------cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchh
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  148 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~-------------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  148 (421)
                      +++...+..+|.++++.++..+...             .+||+.+++.+++.++. ++.+++.||++++.....+.  ..
T Consensus       293 ~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~--~e  369 (742)
T TIGR01299       293 LSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKH--DE  369 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCH--HH
Confidence            9999999999999999887666542             36999999888776554 44455669998874322221  11


Q ss_pred             hhcccccccccCCCcc--ccc-----cchhhhhhh-----hhcccc-----cchhhhhhhhhhhhhHhhhchhh---HHH
Q 014646          149 VASVSEGSEASNLNDH--VSE-----DISDQASER-----SIKSIG-----ESRFLNQLSQFSQDTKVLLQEKV---YVV  208 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~---~~~  208 (421)
                      .....+++...+....  ..+     ..+.....+     .+....     ..+........+.+++.+++.+.   .+.
T Consensus       370 A~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~  449 (742)
T TIGR01299       370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK  449 (742)
T ss_pred             HHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH
Confidence            1111111111111000  000     000000000     000000     00000111223334555665543   344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHh----h-------------------------------------cc----------
Q 014646          209 NVLGYIAYNFVIGAYSYWGPKAGYNI----Y-------------------------------------HM----------  237 (421)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------------------------~~----------  237 (421)
                      +.+.+++..+.++++..|+|.++++.    +                                     +.          
T Consensus       450 l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (742)
T TIGR01299       450 LMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDS  529 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccc
Confidence            55557778888999999999875441    0                                     00          


Q ss_pred             ------------------------------------------------------------c----hhhHHHHhhHhHHHH
Q 014646          238 ------------------------------------------------------------S----NADMMFGGVTIVCGI  253 (421)
Q Consensus       238 ------------------------------------------------------------~----~~~~~~~~~~~~~~~  253 (421)
                                                                                  +    ........+..++.+
T Consensus       530 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i  609 (742)
T TIGR01299       530 LFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVL  609 (742)
T ss_pred             cccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHH
Confidence                                                                        0    000122345567889


Q ss_pred             HHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHH
Q 014646          254 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL  333 (421)
Q Consensus       254 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (421)
                      ++.+++++++||+|||     +++..+.++.++++++....++....+++.++.+++.+..++....++.|.+|++.|++
T Consensus       610 ~G~il~g~L~Dr~GRr-----~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgt  684 (742)
T TIGR01299       610 PGNIVSALLMDKIGRL-----RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRAT  684 (742)
T ss_pred             HHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999998     77777777777766666555555555555566677777777888899999999999999


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          334 SMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       334 ~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++|+.+...+. |.+++|++.+.+.+..  ...++++.+++.++++++.+
T Consensus       685 a~Gi~~~~~rl-Gaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       685 AFGFLNALCKA-AAVLGILIFGSFVGIT--KAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH
Confidence            99999766666 9999999999887752  34566666665555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.1e-34  Score=258.74  Aligned_cols=325  Identities=12%  Similarity=0.018  Sum_probs=230.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|+++++++.|+++||+|||+++..+......+......++|++.+++.|+++|++.+. .+.....++|++|+++|+++
T Consensus        37 ~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a  115 (368)
T TIGR00903        37 AAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLV  115 (368)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHH
Confidence            57889999999999999999987766555555443333447999999999999999986 45566667999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|.++++++++.+.+++|||+.|++.++++++..++.++..||++++.+     +..              
T Consensus       116 ~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~-----~~~--------------  176 (368)
T TIGR00903       116 ISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA-----EGF--------------  176 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-----CCc--------------
Confidence            9999999999999999999999999999999999999888887777777787543210     000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                           +   .+                   +..+++++++++|.+|...+..++....++++.+|+|.|+++ .+.+...
T Consensus       177 -----~---~~-------------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~~  228 (368)
T TIGR00903       177 -----G---FK-------------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDIA  228 (368)
T ss_pred             -----c---hH-------------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChHH
Confidence                 0   00                   001235678899999999999999999999999999999976 4566433


Q ss_pred             HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhh
Q 014646          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  321 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (421)
                      .....+..+   .+.+..++++||..|+..+. ...........+.+.......+........++.+++.....+..+.+
T Consensus       229 ~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  304 (368)
T TIGR00903       229 GDAVALAIL---AGLIGVAVIPDRVARAGLRS-IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDW  304 (368)
T ss_pred             HHHHHHHHH---HHHHHHHHhhHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            333333334   34444688999987653221 21221222223323222223333333444555555565666667788


Q ss_pred             hhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+|.+|++.|+++.|+.+...+. +++.+|.+.+.+..  + ....|.+.+...+++.+..
T Consensus       305 ~~~~~p~~~rgt~~G~~~~~g~~-~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       305 IGKFCDKELHGKAAGAIGFTSRA-ISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHhcchhhcCcccchhhHHHHH-HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877777 77788888887774  2 4456666665555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-36  Score=260.01  Aligned_cols=326  Identities=37%  Similarity=0.594  Sum_probs=251.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +.+.+++|+.|+++|||+||+++.+|..+|.++.++++++..||++.++|.+.|+|++.+.|.++++++|.+|.++|+++
T Consensus        79 v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~  158 (493)
T KOG1330|consen   79 VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRV  158 (493)
T ss_pred             HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++++.+..+|..+|.+.+..+.+..+ |||.|+..++++++.+++.+++.+|.++..  .++.+....           
T Consensus       159 ~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga--~~~~~~~~~-----------  225 (493)
T KOG1330|consen  159 LGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA--RDEVDGENK-----------  225 (493)
T ss_pred             HHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc--ccccccCCc-----------
Confidence            999999999999999999999987766 999999999999999999999887644321  111100000           


Q ss_pred             CCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh---cc
Q 014646          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY---HM  237 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  237 (421)
                                    .           .......+++.+.+.+++.+....+.+....+....+..|.|.+....+   +.
T Consensus       226 --------------~-----------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~  280 (493)
T KOG1330|consen  226 --------------M-----------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGF  280 (493)
T ss_pred             --------------C-----------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCC
Confidence                          0           0112233566777888888888888888888888888888888665443   22


Q ss_pred             c-hhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHH-----HHHHH-HHHHHHHHHHh--hchhHHHHHHHHHHH
Q 014646          238 S-NADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL-----SAATF-LGAISCLTAFC--LSSLYGFLALFTVGE  308 (421)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~  308 (421)
                      + .....+..+...++.+|.+++|.++||+.++.++.....     ..... .++..+.+...  ..+.+..++++.+.-
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~  360 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE  360 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            2 244567788889999999999999999766544321111     11111 11111111111  123344444444444


Q ss_pred             HHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchh
Q 014646          309 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  365 (421)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~  365 (421)
                      ......+.+...+..+.+|++.|.++.++...+...+|.+.+|.+.|.+.|+.-+++
T Consensus       361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            555567777888899999999999999999999999999999999999999876665

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=4.5e-34  Score=262.50  Aligned_cols=333  Identities=12%  Similarity=0.072  Sum_probs=228.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhH--------HHHHHHHHhhhhhhhhcccccccccccC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++..+++++.|+++||+|||+++..+.+++++++++++++++++        .++++|+++|++.|..++....++.|++
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            34568889999999999999999999999999999999999987        5888999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccccc
Q 014646           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      |+++|++..+..+.+..+|.+++..+...+.        +.+|||++|++.+++.++. +......||++++.+.+++.+
T Consensus       155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~  233 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA  233 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc
Confidence            9999999999999999999999887776654        2579999999887764332 222222244322100000000


Q ss_pred             chhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHH-HHHHHHHHHHHHH
Q 014646          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYS  224 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  224 (421)
                      .                             . +++             ....+.++++|+.+.... ..++.....+...
T Consensus       234 ~-----------------------------~-~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  270 (438)
T PRK09952        234 A-----------------------------A-KKR-------------IPVIEALLRHPGAFLKIIALRLCELLTMYIVT  270 (438)
T ss_pred             c-----------------------------c-ccc-------------CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Confidence            0                             0 000             001122445555555443 3445556677778


Q ss_pred             HHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH---hhc-hhHH
Q 014646          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---CLS-SLYG  299 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~  299 (421)
                      .|.|.|.++..+.+.... ....+..+..+++.++.|+++||++||     +.+....++..+......   ... +.+.
T Consensus       271 ~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T PRK09952        271 AFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-----RVYITGALIGTLSAFPFFMALEAQSIFWI  345 (438)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence            899999988887775433 233445566778888999999999998     555444433333222111   112 2223


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh-hchhhhhhHHHHHHHHH
Q 014646          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLA  378 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  378 (421)
                      .....++.+++.+...+..+.+..|.+|++.|+++.++.+...+.+++.++|.+.+++.|.. ++|...+.+...+.+++
T Consensus       346 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~  425 (438)
T PRK09952        346 VFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS  425 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            33334444555555666678888999999999999999766656558888999999998865 34666666666665555


Q ss_pred             HHHhh
Q 014646          379 AGIWF  383 (421)
Q Consensus       379 ~~~~~  383 (421)
                      .+..+
T Consensus       426 ~v~~~  430 (438)
T PRK09952        426 AMTAL  430 (438)
T ss_pred             HHHHH
Confidence            55444

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=5.9e-34  Score=260.43  Aligned_cols=352  Identities=18%  Similarity=0.207  Sum_probs=252.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        40 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~  119 (399)
T TIGR00893        40 WGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA  119 (399)
T ss_pred             HHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|.++++.+++.+.+..+||+.|++.+++.++..++.++..||.+++....++++ +  ....++      
T Consensus       120 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~------  190 (399)
T TIGR00893       120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE-K--YIVVGG------  190 (399)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHH-H--hhcchh------
Confidence            9999999999999999999999998999999999998887777766666565432211000000 0  000000      


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                             ...+.+.+ +++          +......++.+++|.++...+..++.......+..+.|.|+++..+.++..
T Consensus       191 -------~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (399)
T TIGR00893       191 -------LLAEQQGK-GPS----------TPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE  252 (399)
T ss_pred             -------hccccccc-ccc----------CCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH
Confidence                   00000000 000          001124566778899998888888888888889999999999888877544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHhccccc
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      . .......++.+++.++.+++.||++||+..................+....   .++.+.......+..++. ...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  331 (399)
T TIGR00893       253 AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL-GAGAI  331 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch-hhhhH
Confidence            4 445667788899999999999999988421101111111111111111111   122333332333333333 35677


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ...+..+.+|+++|+++.|+.+...+. |..++|.+.|.+.|..|++...+.+.+.+.+++.+..
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       332 GWALISDNAPGNIAGLTGGLINSLGNL-GGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHhhcChhHHHHHHHHHHHHHHH-hhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            788899999999999999999777665 8899999999999987767777777766655554443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=5.5e-34  Score=266.74  Aligned_cols=370  Identities=15%  Similarity=0.129  Sum_probs=229.5

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +|++++++++|+++||+|||+++.++.+++.+++++++++++      ++.++++|+++|++.|...+....++.|++|+
T Consensus        67 ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~  146 (502)
T TIGR00887        67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK  146 (502)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh
Confidence            578899999999999999999999999999999999888876      78999999999999999999999999999999


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhc-----------------------ccchhHHHHHhHHHHHHHHHHHHhccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      ++|++++++.+....+|.++++.++..+..                       .++||++|.+.++++++..+. .++.|
T Consensus       147 ~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lp  225 (502)
T TIGR00887       147 KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIP  225 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence            999999999999999999999988765531                       247999998888777654443 45569


Q ss_pred             ccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhc----hhh---
Q 014646          133 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ----EKV---  205 (421)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~---  205 (421)
                      |++++...+++.++... +...+.++.+.+++ .++.++.+++   ++..           ..+++++++    ++.   
T Consensus       226 ESpr~l~~~~~~~~~a~-~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-----------~~~~~~l~~~~~~~~~~~~  289 (502)
T TIGR00887       226 ETPRYTADVAKDVEQAA-SDMSAVLQVKIEAE-PDEVEKASTA---VEVP-----------KASWSDFFTHFFKWRHGKH  289 (502)
T ss_pred             CCHHHHHHhCcchHHHH-HHHHHHhccccccC-cccccchhcc---ccch-----------hhhHHHHHHHHhhhHHHHH
Confidence            99887432222111000 00011100000000 0000000000   0000           011233332    111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh-------------HHHHhhHhHHHHHHHhHHHHHHHhhcccccc
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-------------MMFGGVTIVCGIVGTISGGFILDQMGATISN  272 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  272 (421)
                      .......++.....+++...|.|.++++. |.+...             .....+..++.+++.+++++++||+|||   
T Consensus       290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR---  365 (502)
T TIGR00887       290 LLGTAGSWFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK---  365 (502)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHHHH-cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch---
Confidence            12222233444455666777888888654 443211             0122334456677888999999999998   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHh-hc--hhHHHHHHHHHHHHH-HhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccC
Q 014646          273 AFKLLSAATFLGAISCLTAFC-LS--SLYGFLALFTVGELL-VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV  348 (421)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~  348 (421)
                        +.+.....+..+++..... ..  +.........+..++ .....+..+.+..|.+|++.|+++.|+.+...+. +++
T Consensus       366 --~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~-~~~  442 (502)
T TIGR00887       366 --PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA-GAI  442 (502)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh-HHH
Confidence              6655554444433322221 11  111112222222222 2233445566778999999999999999877776 889


Q ss_pred             CchhHHHHhhhhhh---------chhhhhhHHHHHHHHHHHHhhhheeeec-cccccccc
Q 014646          349 PSSPLVGVLQDHVN---------NWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDG  398 (421)
Q Consensus       349 ~~~~~~g~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  398 (421)
                      ++|.+.+.+.|..+         ++...+.+++++.+++.+..+   ++|| ++++.||.
T Consensus       443 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~---~lpEt~~~~leei  499 (502)
T TIGR00887       443 IGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL---LIPETKGKSLEEL  499 (502)
T ss_pred             HHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHhe---EeccCCCCCHHhh
Confidence            99999999988431         123455666555554443332   4455 55554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.8e-33  Score=259.92  Aligned_cols=353  Identities=13%  Similarity=0.077  Sum_probs=234.5

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc----hhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++++++++.|+++||+|||++++++.++.+++.+++++++    +++.+++.|++.|++.+...+.....+.|++|+++
T Consensus        74 i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~  153 (452)
T PRK11273         74 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  153 (452)
T ss_pred             HHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH
Confidence            56788999999999999999999999999999999888763    78888999999999999888888888999999999


Q ss_pred             chhHHHHHHhHHHHHhH-HHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++++.+.++|.. .+|+++..+....+||+.|++.+++.++..++.+++.||+++....+++++..         
T Consensus       154 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------  224 (452)
T PRK11273        154 RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK---------  224 (452)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh---------
Confidence            99999999999999874 45655444434458999999999888777777666667654321111100000         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                       ++..         ++.+.+..++       .+.++.  -.+.+++++.+|...+..++.+...+....|+|.|+++..+
T Consensus       225 -~~~~---------~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g  285 (452)
T PRK11273        225 -NDYP---------DDYNEKHEQE-------LTAKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  285 (452)
T ss_pred             -hccc---------cccccccCCC-------ccHHHH--HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             0000         0000000000       000010  02346788999988888878777778888999999998877


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHhc
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  313 (421)
                      .+.... ....+..++.+++.++.|+++||++++++.  ........+..+.......  ..+.+...+.....+.....
T Consensus       286 ~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  363 (452)
T PRK11273        286 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG  363 (452)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence            775444 334566678888999999999999543211  1111111211121111111  12222222223333333222


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      ..........+.+|++.|++++|+.+...+..+...+|.+.|++.|+.| |...|..++...+++++....+
T Consensus       364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHH
Confidence            2222344567889999999999999777666334557999999999987 7788887777666665555433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.4e-33  Score=256.64  Aligned_cols=329  Identities=17%  Similarity=0.168  Sum_probs=237.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  140 (406)
T PRK11551         61 LGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTA  140 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..+++.+++.+.+..+||+.|++.+++.++..++.....||++++..++++.+..              
T Consensus       141 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------  206 (406)
T PRK11551        141 VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--------------  206 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--------------
Confidence            999999999999999999999888899999999988776666665665567643321100000000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                           +                    ..    .+...+..+.+..+......++.....+....|.|.++++ .+.++..
T Consensus       207 -----~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~  256 (406)
T PRK11551        207 -----A--------------------PV----LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQ  256 (406)
T ss_pred             -----h--------------------hh----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhh
Confidence                 0                    00    0000000011222233333344444556677789999887 4555433


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.|++.||+++|     +.+...........+.....++.+...+...+.+++.....+....
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  331 (406)
T PRK11551        257 AGLVQIAFNIGGALGSLLIGALMDRLRPR-----RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYA  331 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3 444666788899999999999999987     5555444444444343344445444444555566666566677788


Q ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      +..+.+|+++|+++.|+.+...+. |..++|.+.|.+.++.+++...+.....+.+.+..
T Consensus       332 ~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        332 LAPLFYPTQVRGTGVGAAVAVGRL-GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL  390 (406)
T ss_pred             HHHHHcchhhhhhhhhHHHHhhhH-HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence            889999999999999999777666 88999999999999866665555544444444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=5.4e-33  Score=252.07  Aligned_cols=321  Identities=12%  Similarity=-0.022  Sum_probs=234.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+..+++++.+.+++++|++.+++.|+++|++.+...+....++.|++| ++|+++
T Consensus        55 ~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~  133 (393)
T PRK09705         55 VTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLV  133 (393)
T ss_pred             HHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhH
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999997 779999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      ++.+..+...|..+++.+++.+.++. +||+.+.+.++..++..+..+...++.+     +++++..             
T Consensus       134 ~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------------  195 (393)
T PRK09705        134 MGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV-----ASSHKTT-------------  195 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-----ccccCCC-------------
Confidence            99999999999999999999988875 8999988776654433322222111100     0000000             


Q ss_pred             CCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh
Q 014646          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                                        ...++.++++..+...+..++....+.....|.|.++++ .+.+..
T Consensus       196 ----------------------------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~  240 (393)
T PRK09705        196 ----------------------------------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQ  240 (393)
T ss_pred             ----------------------------------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChh
Confidence                                              001123356666666666666777778888999999987 577654


Q ss_pred             hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .. ....+..++.+++.++.+++.||.++|     +.......+...........++.... ....+.+++.+...+...
T Consensus       241 ~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~  314 (393)
T PRK09705        241 YSGSLLALMTLGQAAGALLMPAMARHQDRR-----KLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFPLCL  314 (393)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHHHHH
Confidence            44 445677888999999999999999987     55555544444433332222221111 122334555555555555


Q ss_pred             hhhhcccC-cchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          320 YVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       320 ~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ....+..+ ++++++..|+.+...+. +..++|.+.|++.|..|++...+.+...+.+...+...
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFI-IAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            55666665 47899999999777666 77889999999999998887888877766655544433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=4e-33  Score=259.25  Aligned_cols=348  Identities=15%  Similarity=0.150  Sum_probs=244.5

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc--chhHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +++.+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus        87 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~  166 (465)
T TIGR00894        87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS  166 (465)
T ss_pred             HHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence            5788999999999999999999999999999998887554  56888999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHhHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           80 AWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +++++...+..+|.++++++++.+.+. .|||+.|++.++++++..++.+.+.||+++..+.  ..+.. .         
T Consensus       167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~-~---------  234 (465)
T TIGR00894       167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFE-K---------  234 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHH-H---------
Confidence            999999999999999999999999988 4999999999998887777776665554322110  00000 0         


Q ss_pred             cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Q 014646          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                              +..++..+++.++.           +...+++++++++.++...+..++.....+.+.+|+|.|+++..+.+
T Consensus       235 --------~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s  295 (465)
T TIGR00894       235 --------KYINSSLQGQKGST-----------RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVS  295 (465)
T ss_pred             --------HHHHhhcccccCCC-----------CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence                    00000000000000           00124677889999999999889998899999999999999988888


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhh----HHHHHHHHH-HHHHHHHHh-hchhHHHHHHHHHHHHHH
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK----LLSAATFLG-AISCLTAFC-LSSLYGFLALFTVGELLV  311 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~  311 (421)
                      .... ....++.++..++.++.|+++||+++|+...+.    ......... ....+.... ..+....++.+.+.+++.
T Consensus       296 ~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  375 (465)
T TIGR00894       296 GKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS  375 (465)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            6554 445677888999999999999998765322111    111111111 111111111 223333333444444444


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh--hchhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +...+.......+.. ++.+|.+.|+.+..... +..++|.+.|.+.|..  +.|...|.+.++..+++.++.
T Consensus       376 ~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~l-~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       376 SGPLAGVLINSLDLA-PRFLGFIKGITGLPGFI-GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             hhhhhhhhhchhhcC-hhHHHHHHHHHHHHHHH-HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            444443333444444 56899999999877666 8888999999888753  446677777766665555443

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=4.8e-33  Score=261.70  Aligned_cols=353  Identities=14%  Similarity=0.099  Sum_probs=235.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|+++++++.|+++||+|||++++++.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++
T Consensus       138 ~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~  217 (505)
T TIGR00898       138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIV  217 (505)
T ss_pred             HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      .++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.||++++...+++.++  ..+..++..+.+.
T Consensus       218 ~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~--a~~~l~~~~~~~~  291 (505)
T TIGR00898       218 GTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEE--ALKILQRIAKING  291 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHH--HHHHHHHHHHHcC
Confidence            999999999999999999877654   9999999998877766655 556887765322211111  1010011111110


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      .....+......+++..+++           ...++++++++|.++...+......+......+..+.+..+ .+.+  .
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~  357 (505)
T TIGR00898       292 KKLPAEVLSLSLEKDLSSSK-----------KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-LGGN--I  357 (505)
T ss_pred             CCCCHHHHhhhhhhhhhhcc-----------CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC--h
Confidence            00000000000000000000           01246678888887776655444333322222222222222 2222  1


Q ss_pred             HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHHhccccchh
Q 014646          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL--YGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .....+..+..+++.++.+++.||+|||     +.+....++.++.++.....++.  +......++.+++....++..+
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVY  432 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223445677788999999999999998     66666666655555544443332  3344445555566666667778


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+..|.+|++.|++++|+.+...+. |++++|.+.+ +.+ .+ ...++.+.+...+++.++.+
T Consensus       433 ~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       433 LYTAELYPTVVRNLGVGVCSTMARV-GSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTL  492 (505)
T ss_pred             HHhcccccHHHHhhhHhHHHHHHHH-HHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999766665 8899998888 443 23 33555555555555544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.5e-33  Score=260.00  Aligned_cols=351  Identities=14%  Similarity=0.087  Sum_probs=242.9

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHH-HHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +..++.++.|+++||+|||++++.+.++..+++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++
T Consensus        66 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a  144 (455)
T TIGR00892        66 VLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA  144 (455)
T ss_pred             HHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence            45677899999999999999999999999999999999999998875 5799999999777777788899996 679999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..++..|+.......+++.+.        ..+....
T Consensus       145 ~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  216 (455)
T TIGR00892       145 NGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE--------GLPPDGS  216 (455)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc--------cCCCCCc
Confidence            99999999999999999999999999999999999988776655555544331110000000000        0000000


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                          .++    .+.... .       ++..+ ..++ +++++|.++......++..........++|.|.++ .+.++..
T Consensus       217 ----~~~----~~~~~~-~-------~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~  277 (455)
T TIGR00892       217 ----TKK----LSKKST-A-------EKINR-FLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYE  277 (455)
T ss_pred             ----ccc----ccccch-h-------hhhhh-hcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHH
Confidence                000    000000 0       00000 0112 46688888888877777777777778889999876 5666544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . ...++..++.+++.++.+++.||...+.++ ...+..+........++....++.+.+.+...+.+++.+...+....
T Consensus       278 ~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~  356 (455)
T TIGR00892       278 AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHV-QYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFE  356 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHH
Confidence            4 444667788888899999999974322111 12222222222222233333445555555666677777677777788


Q ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+.+.+|+++++++.|+++...+. |.+++|.+.|.+.|..++|...++..+++.+++.+...
T Consensus       357 ~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~  418 (455)
T TIGR00892       357 VLMDLVGAQRFSSAVGLVTIVECC-AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA  418 (455)
T ss_pred             HHHHHhhHHHHhhHHhHHHHHHHH-HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence            889999999999999999777666 99999999999999887788888887776665554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=8.4e-33  Score=249.83  Aligned_cols=313  Identities=17%  Similarity=0.142  Sum_probs=240.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc-----hhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      ++++++++++|+++||+|||++++.+.++..++.++..+++     +++.+++.|+++|++.+...+...+++.|++|++
T Consensus        45 ~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  124 (365)
T TIGR00900        45 LPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE  124 (365)
T ss_pred             HHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            46678899999999999999999999999999988888887     9999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      +|++++++.+.+..+|.+++|.+++.+.+..|||+.|++.++..++..+..+...++..+.   +++++ .         
T Consensus       125 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---------  191 (365)
T TIGR00900       125 QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA---SEIQA-L---------  191 (365)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC---ccccc-c---------
Confidence            9999999999999999999999999999999999999998876655554444332211100   00000 0         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHH-HHhhhHHHHhh
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS-YWGPKAGYNIY  235 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  235 (421)
                               ++                    +..++..+.++.++++|.++...+..+.......... .+.|.+.++..
T Consensus       192 ---------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T TIGR00900       192 ---------SN--------------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL  242 (365)
T ss_pred             ---------ch--------------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence                     00                    0001112345667788888887777666666666665 78899888877


Q ss_pred             ccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHhc
Q 014646          236 HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-LYGFLALFTVGELLVFA  313 (421)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  313 (421)
                      +.++... .......++.+++.++.+++.||.+++     +.+..+..+...........++ .+...+..++.+++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            7775444 344666788889999999999999887     6555554444444444443443 55556666777777777


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ..+....+..+.+|+++|+++.|+.+...+. +..++|.+.|.+.|..|
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHA-AWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            7778888999999999999999999877776 88899999999998653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=9.6e-33  Score=250.57  Aligned_cols=322  Identities=12%  Similarity=0.025  Sum_probs=237.3

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+.....+.|++| ++|+++
T Consensus        49 ~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  127 (377)
T TIGR00890        49 IGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLA  127 (377)
T ss_pred             HHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHH
Confidence            5778999999999999999999999999999999999999999999999999999999888888888999987 469999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+.++|..+++++.+.+.+..+||+.|++.+++.++..+..+++.|+.+++.    +++..              
T Consensus       128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------  189 (377)
T TIGR00890       128 SGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL----IKTNI--------------  189 (377)
T ss_pred             HHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc----cccCc--------------
Confidence            999999999999887777777777789999999999988887777666654322110    00000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                            +.+        ++             ..+.++.++++.++...+..++..........+.+.|.++ .+.++..
T Consensus       190 ------~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  241 (377)
T TIGR00890       190 ------EVS--------VK-------------DYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGF  241 (377)
T ss_pred             ------ccc--------hh-------------hhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHH
Confidence                  000        00             0123456677877776666665555555555666666655 4555433


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch--hHHHHHHHHHHHHHHhccccch
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      . .......+..+++.++.+++.||++||     +.+..+.....+..+.....++  .........+.+++.+...+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       242 LVLAVSISSIFNGGGRPFLGALSDKIGRQ-----KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            3 445677788899999999999999988     6665555555554444433332  2222233444555555566666


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHH
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  377 (421)
                      ..+..|.+|+++|+++.|+.+...+. |..++|.+.|.+.|..| |...+...+.+.++
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~  373 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAV-AGIFGGLIASHALTEIG-FEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHH
Confidence            77888999999999999999766665 88999999999999876 77777766655444

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=5.5e-32  Score=248.91  Aligned_cols=306  Identities=14%  Similarity=0.136  Sum_probs=207.1

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHH--------HHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      .+++++.|+++||+|||++++.+.+++.+++++++++++++.        ++++|+++|++.+...+....++.|++|++
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  149 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG  149 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence            467889999999999999999999999999999999999874        688999999999999998899999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchh
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV  148 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  148 (421)
                      +|++++++...+.++|..+++.+++.+.        +.+|||++|++..+..    +..++. ++.++     |+++...
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~----~~~~~~-~~~~~-----e~~~~~~  219 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV----PFIFLI-RRSLE-----ETEEFLA  219 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH----HHHHHH-HHhcC-----CCHHHHH
Confidence            9999999999998888888888777653        4679999999754332    111111 11110     1000000


Q ss_pred             hhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHH-HHHHHHHHHHHHHHHHHh
Q 014646          149 VASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  227 (421)
                      . .                          ++.        +.+   +.++...+++..+.. .+..++.....+....|.
T Consensus       220 ~-~--------------------------~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (434)
T PRK15075        220 R-K--------------------------HRP--------SMR---EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYT  261 (434)
T ss_pred             h-h--------------------------hcc--------ccc---cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0                          000        000   112223344443332 222334455667788899


Q ss_pred             hhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH-H--HH-hhchhHHHHH
Q 014646          228 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-T--AF-CLSSLYGFLA  302 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~  302 (421)
                      |.|+++..+.+..+. .......++++++.++.|+++||++||     +.............. .  .. ..++......
T Consensus       262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-----PVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            999998878876544 344566788889999999999999998     554443322222111 1  11 1122222222


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  363 (421)
                      ...+.+++.+...+....+..|.+|++.|+++.++.+...+.+++.++|.+.|++.|..|.
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            2333444455555555677889999999999999976666655567799999999998773

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.4e-32  Score=257.14  Aligned_cols=370  Identities=15%  Similarity=0.110  Sum_probs=220.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc------------chhHHHHHHHHHhhhhhhhhcccccccc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFI   69 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i   69 (421)
                      +|++++++++|+++||+|||++++++.+++.++.+.++++            +.++.++++|+++|++.|...+...+++
T Consensus        66 ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i  145 (479)
T PRK10077         66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYI  145 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHH
Confidence            6788999999999999999999999999999998887763            2356788999999999999999999999


Q ss_pred             cccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCc
Q 014646           70 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  141 (421)
Q Consensus        70 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  141 (421)
                      +|++|+++|++++++.+.+..+|.++++.++..+.        +.+|||+.|++.+++.++..+. .++.||++++...+
T Consensus       146 ~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~  224 (479)
T PRK10077        146 AEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSR  224 (479)
T ss_pred             HhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHc
Confidence            99999999999999999999999999988776553        4569999999988887776544 45568866442111


Q ss_pred             ccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHH---HHHHHHHHHH
Q 014646          142 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV---NVLGYIAYNF  218 (421)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~  218 (421)
                      ++.++  .+...++....+   +..+..++..+...++.              +..+..+.......   .....+....
T Consensus       225 ~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (479)
T PRK10077        225 GKQEQ--AEGILRKIMGNT---LATQALQEIKHSLDHGR--------------KTGGKLLMFGVGVIVIGVMLSVFQQFV  285 (479)
T ss_pred             CCHHH--HHHHHHHHcCCh---hHHHHHHHHHHHHHHhh--------------hhhhhhcchhHHHHHHHHHHHHHHHHh
Confidence            11110  000000000000   00000000000000000              00000111000000   0111111122


Q ss_pred             HHHHHHHHhhhHHHHhhccchhh-HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--hc
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LS  295 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  295 (421)
                      ..+...++.|.+.++ .+.+... ........+..+++.+++++++||++||     +.+..+..+..+..+....  ..
T Consensus       286 ~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHhHHHHHHHHHHHHHHHhc
Confidence            233445667777655 4554332 3334556677889999999999999998     6666555554444333221  11


Q ss_pred             h-h-HHHHHHHHHHHHHHhccc-cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh------hhhhchhh
Q 014646          296 S-L-YGFLALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ------DHVNNWRK  366 (421)
Q Consensus       296 ~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~------~~~~~~~~  366 (421)
                      + . .......++.+++.+... +..+.++.|.+|+++|++++|+.+...+. +.++++.+.+.+.      |..+ +..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~p~~~~~~~~~~~~~-~~~  437 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI-ANYFVSWTFPMMDKNSWLVAHFH-NGF  437 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhhcc-Ccc
Confidence            1 1 122222333333333323 45678888999999999999999766665 7777766665444      4444 345


Q ss_pred             hhhHHHHHHHHHHHHhhhheeeec-ccccccccccc
Q 014646          367 TTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQ  401 (421)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  401 (421)
                      .+++.++..+++.++.+  ...+| |+++.+|.++.
T Consensus       438 ~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        438 SYWIYGCMGVLAALFMW--KFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHHHHHHHHHH--hccccCCCCCHHHHHHH
Confidence            56665554444433332  23344 44444444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.4e-32  Score=254.83  Aligned_cols=338  Identities=12%  Similarity=0.020  Sum_probs=225.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.+... ....++.|++|+++|+++
T Consensus        82 ~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a  160 (476)
T PLN00028         82 SGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTA  160 (476)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHH
Confidence            5678899999999999999999999999999999999999999999999999999988654 456678999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhh----c-----ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  152 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~----~-----~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  152 (421)
                      +++.....++|..+++.+.+.+.    +     ..|||+.|++.+++.++..++.+++.++.++.     +.++. . + 
T Consensus       161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~-~-~-  232 (476)
T PLN00028        161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYREL-K-K-  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhH-H-h-
Confidence            99998877777777766554432    2     25899999999998887776666553321110     00000 0 0 


Q ss_pred             cccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014646          153 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                                         +  .+ .++          .+..+.+++.++++++|...+.+++.......+..+.|.|+.
T Consensus       233 -------------------~--~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  280 (476)
T PLN00028        233 -------------------S--GT-MPK----------DSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFY  280 (476)
T ss_pred             -------------------c--Cc-ccc----------ccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                               0  00 000          000123556678888887777666555556667788999998


Q ss_pred             HhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccch-hh-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 014646          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNA-FK-LLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      +..+.+.... .+..+..++++++.++.|+++||++||...+ ++ .......+..+.++.....++.+...+.+++.++
T Consensus       281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~  360 (476)
T PLN00028        281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI  360 (476)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            8888886544 4456778899999999999999998763221 12 2222222232222333333333333334444444


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh--hhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--VNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      +.+...+....+..+ +.+++++++.|+.+.     ++.+++.+.+++.+.  .++|...|++.+++.+++.++.+..+
T Consensus       361 ~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~-----~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        361 FVQAACGATFGIVPF-VSRRSLGVISGLTGA-----GGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHhhhhhcccCcc-cChhhchhhhhhhhc-----cccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            444444444444444 456788988888743     334455556666553  24588888888877777766665443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=7.3e-32  Score=244.40  Aligned_cols=313  Identities=14%  Similarity=0.101  Sum_probs=227.9

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        66 ~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a  145 (394)
T PRK10213         66 FVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKA  145 (394)
T ss_pred             HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+.++|.+++|++++.+.+.+|||+.|++.+++.++..+......||.++      +++..              
T Consensus       146 ~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~------~~~~~--------------  205 (394)
T PRK10213        146 LSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG------EPSHQ--------------  205 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc------ccccc--------------
Confidence            9999999999999999999999999999999999887666554444333344210      00000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHh-hhHHHHhhccchh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG-PKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  240 (421)
                                                      .++.++.+++|.++...+..++..........+. |.+. +..+.++.
T Consensus       206 --------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~  252 (394)
T PRK10213        206 --------------------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVD  252 (394)
T ss_pred             --------------------------------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChh
Confidence                                            0123356678888876665555555555556665 5554 45677754


Q ss_pred             hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      .. .......++++++.++.+++.||.+++     .............+++....++.+.......+.+++.+...+...
T Consensus       253 ~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-----~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  327 (394)
T PRK10213        253 GLTLVLLSFGIASFVGTSLSSFILKRSVKL-----ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWS  327 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            44 334556678888888999999985433     333333332333333333344555555566667777777777777


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHH
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  375 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  375 (421)
                      +.+.+..| ++++++.+......+ +|..+||.+.|++.|..| +...+...+.+.
T Consensus       328 ~~~~~~~~-~~~~~~~~~~~~~~~-lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~  380 (394)
T PRK10213        328 TWITRSLA-DQAEKAGSIQVAVIQ-LANTCGAAIGGYALDNIG-LTSPLMLSGTLM  380 (394)
T ss_pred             HHHHHHCc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-hhhHHHHHHHHH
Confidence            77888776 456677776644444 488999999999999876 545555554443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-32  Score=247.18  Aligned_cols=349  Identities=15%  Similarity=0.152  Sum_probs=261.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .|+++++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.|..+|+...+.++|.|++||+
T Consensus        84 ~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers  163 (466)
T KOG2532|consen   84 WGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS  163 (466)
T ss_pred             HHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH
Confidence            68999999999999999999999999999999999998875  4567899999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHhHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           80 AWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +..++..++..+|.+++-+++|++.+. +||+++|++.++++++..++++++..|+|.+++.-.+++             
T Consensus       164 ~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E-------------  230 (466)
T KOG2532|consen  164 TFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE-------------  230 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH-------------
Confidence            999999999999999999999999988 999999999999999998888877655433311111000             


Q ss_pred             cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Q 014646          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                             .+.+++.+.++..+++           ...+++++++++.+|...+..++.+...+.+..|+|.|+++..+++
T Consensus       231 -------l~~I~~~k~~~~~~~~-----------~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~  292 (466)
T KOG2532|consen  231 -------LKYIEKGKSEAHVKKK-----------PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFD  292 (466)
T ss_pred             -------HHHHHhcccccccCCC-----------CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence                   0111111111100000           1257999999999999999999999999999999999999999999


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhccccc---chhhHH-HHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHH
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATIS---NAFKLL-SAATFLGAISCLTAFCLS--SLYGFLALFTVGELLV  311 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  311 (421)
                      ..+. .+++++.+...+..+++|.++||+.+|..   ..++.. .++....++.++.+.+.+  +.+..++++.+.....
T Consensus       293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS  372 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence            6555 66689999999999999999999877411   123444 333333444444444443  2323333333333333


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh-h-hhchhhhhhHHHHHHHHHHHHhh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-H-VNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +...+ ..........|++.+..+|+.|..... .++++|.+.|.+.. . ...|+..|++.+++.+++.+++.
T Consensus       373 g~~~~-Gf~~~~~~~apq~a~~l~g~~~~~~~~-~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  373 GFNIS-GFYKNHQDIAPQHAGFVMGIINFVGAL-AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             ccchh-hhHhhhhhccchHHHHHHHHHHHHHHH-HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence            33333 333333333678999999999877777 77889999999983 2 34688888888888777775544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=9.9e-32  Score=243.30  Aligned_cols=322  Identities=15%  Similarity=0.154  Sum_probs=229.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        49 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (382)
T PRK10091         49 LGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAA  128 (382)
T ss_pred             HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHH
Confidence            57789999999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|++++.+.+..+||+.|++.+++.++..+..++..||.+++    ++.+ .              
T Consensus       129 ~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~~~-~--------------  189 (382)
T PRK10091        129 VAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AKGG-L--------------  189 (382)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cccC-H--------------
Confidence            99999999999999999999999989999999999988777666555555653210    0000 0              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .+.+ +.++++..+......++..........+.+.++.+..+.++..
T Consensus       190 --------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  236 (382)
T PRK10091        190 --------------------------------REQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETS  236 (382)
T ss_pred             --------------------------------HHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                                            0011 2345555555544444444444455566777787777777654


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA-FCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .+.....++.+++.++.+++.||++++     +.+.....+..+..+.. ...++.+.......+.+.+.....++..
T Consensus       237 ~~~~~~~~~~~~~ig~~~~g~l~~r~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        237 MTFIMMLVGLGMVLGNLLSGRLSGRYSPL-----RIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHheeccccCch-----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4 445677788999999999999999987     55555544444443332 2233333333333344444433334333


Q ss_pred             h-hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          320 Y-VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       320 ~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      . ...+..+++.++.+.  .+...+. |..+||.+.|++.|..++|...+...+....+......
T Consensus       312 ~~~~~~~~~~~~~~~~~--~~~~~~~-g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        312 ILLLQNAKGGELLGAAG--GQIAFNL-GSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHhCCcchHHHHHH--HHHHHHH-HHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            3 333434445555543  3344444 88999999999999877788888877666555554444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.5e-32  Score=249.40  Aligned_cols=333  Identities=15%  Similarity=0.171  Sum_probs=236.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        41 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~  120 (379)
T TIGR00881        41 IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTW  120 (379)
T ss_pred             HHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheee
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHH-HHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~-~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++.+.+..+|..+++ .++..+.+..+||+.|++.+++.++..++.++..||.++....++.++..             
T Consensus       121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  187 (379)
T TIGR00881       121 VSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP-------------  187 (379)
T ss_pred             EeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc-------------
Confidence            9999999999999999 57777777889999999998887777776666666543321111000000             


Q ss_pred             CCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh
Q 014646          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                      . ++.++.    .+ +.+++         ........+.++++|.++...+..++.......+..+.|.|+++..+.++.
T Consensus       188 ~-~~~~~~----~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  252 (379)
T TIGR00881       188 N-EEPDGD----AE-KKEEE---------LTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE  252 (379)
T ss_pred             c-cccccc----cc-ccccc---------ccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            0 000000    00 00000         000012345677889888888888888888888889999999988888765


Q ss_pred             hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHhccccc
Q 014646          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      .. .......++.+++.++.+++.||..++++.  ...................  ..+.........+.+.+.....+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (379)
T TIGR00881       253 KASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG--PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQML  330 (379)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHH
Confidence            44 444667788899999999999986543211  1111111111122222221  122233333334444444444444


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhh
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  366 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  366 (421)
                      ......+.+|++.|+++.|+.+...+. |..++|.+.|.+.|..| |+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       331 IGVIASELAPKKAAGTAAGFVGFFAYL-GGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHhhhh-hhhhhhhhHHHHHHhhc-ccc
Confidence            566788889999999999999766666 88899999999999866 543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=6.3e-32  Score=247.77  Aligned_cols=322  Identities=10%  Similarity=0.013  Sum_probs=230.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhc-----ccchhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+..+     ..++++.+++.|+++|++.+...+...+++.|++|++
T Consensus        63 l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  142 (417)
T PRK10489         63 GAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE  142 (417)
T ss_pred             HHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH
Confidence            56788999999999999999999988887777665543     2578899999999999999988888899999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      +|+++.++.....++|..+||.+++.+.+..+|++.|++.++..++..++.+ ..|+.+++.   ++++ .         
T Consensus       143 ~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---~~~~-~---------  208 (417)
T PRK10489        143 NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPALPPPP---QPRE-H---------  208 (417)
T ss_pred             HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCCCCCC---cccc-c---------
Confidence            9999999999999999999999999999888999999988877665544433 335432110   0000 0         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                                      ..++..+.++.++++|.++...+..++... ......+.|.|.++..+
T Consensus       209 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g  255 (417)
T PRK10489        209 --------------------------------PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQ  255 (417)
T ss_pred             --------------------------------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccC
Confidence                                            000112235556777777665554443332 35567788999998777


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccc
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      .++... .+.....++.+++.++.+++.||.+++     +.+.....+..+..+.....++.+...+..++.+++.+...
T Consensus       256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        256 MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            775444 334566778888999999999886554     44444444444444444444555555555555666665555


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHH
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  377 (421)
                      +...+++.+..|++.|++++|+.+...+. |..++|.+.|++.|..|. ...+...+.+..+
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~g~~l~G~l~~~~g~-~~~~~~~~~~~~~  390 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVT-GDAIGAALLGGLGAMMTP-VASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHhch-hhHHHHHHHHHHH
Confidence            55677888889999999999999765555 999999999999998773 3455544444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.5e-31  Score=246.41  Aligned_cols=316  Identities=14%  Similarity=0.107  Sum_probs=216.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++
T Consensus        64 ~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~  143 (426)
T PRK12307         64 IGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKA  143 (426)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHh
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|.++++.+.+.+.+..+||+.|++..+..++ .+......||++++.    +++..          +.+.
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~----~~~~~----------~~~~  208 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWE----EAKLS----------GKGK  208 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHH----Hhhhh----------cccc
Confidence            99999999999999999999998989999999986443222 111111113221110    00000          0000


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHH---HHHHHHHHHHHHhhhHHHHhhccc
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI---AYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                 .    .+        ...++...+++++++++.++.......   ........+..++|.|+++. +.+
T Consensus       209 -----------~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  264 (426)
T PRK12307        209 -----------H----SQ--------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFD  264 (426)
T ss_pred             -----------c----cc--------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence                       0    00        000001124556777777665443222   22223334567889888874 555


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH--hccc
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV--FATQ  315 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  315 (421)
                      +... .......++.+++.++.+++.||++||     +....+.++..+..+...............++.+.+.  ....
T Consensus       265 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (426)
T PRK12307        265 TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK-----KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG  339 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence            4333 344666788899999999999999988     6555555444443333322221111111222222211  1223


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +.....+.+.+|++.|++++|+.+...+. ++.++|.+.|++.+..|
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAAT-SGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhH-HHHHHHHHHHHHHHccc
Confidence            34556778999999999999999767666 88899999999999876

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2.7e-31  Score=241.52  Aligned_cols=322  Identities=12%  Similarity=0.090  Sum_probs=233.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|++.||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        53 ~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~  132 (394)
T PRK03699         53 AGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSR  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhh-cccchhHHHHHhHHHHHHHHHHHHhcc-cccccccCCcccccchhhhccccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ++..+....+|..++|.+.+.+. +..+||+.|.+.+++.++..++.++.. |+       +++++..   +        
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~---~--------  194 (394)
T PRK03699        133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPA-------LGKHAPK---A--------  194 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCCcc-------ccccCcc---c--------
Confidence            99999999999999999888775 457999999998887766555443321 11       0000000   0        


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                       .              + +.                 .+. ..++.++...+..++.....+.+..|.|.|+++.++.++
T Consensus       195 -~--------------~-~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~  240 (394)
T PRK03699        195 -D--------------K-PV-----------------AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSL  240 (394)
T ss_pred             -c--------------C-cc-----------------ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence             0              0 00                 000 013445555565666666677888999999998888886


Q ss_pred             hhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .+. .+.....++..++.++.+++.||+++|     +.+.....+...........++.+...+..++.+++.+..++..
T Consensus       241 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  315 (394)
T PRK03699        241 EDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ-----RILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTI  315 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhchh-----hHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            544 444666788899999999999999998     55554444444444444344444444445555666665565655


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .....+..| +.+++..+..+...+ +|..++|.+.|++.|..| +...++...++.+++....+
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~-~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        316 ITLGSQQTK-VASPKLVNFILTCGT-IGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHcc-CCCHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHH
Confidence            656666554 445677787765555 488999999999999877 66777766666555544444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=8.9e-32  Score=246.67  Aligned_cols=337  Identities=11%  Similarity=0.063  Sum_probs=228.5

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        58 ~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~  137 (405)
T TIGR00891        58 ISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKA  137 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      +++.+.+..+|.++++.+++.+.+..+  ||+.|++.+++.++.. +.....||++++.+++++.+..            
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------  204 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALV------------  204 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhh------------
Confidence            999999999999999999999887766  9999988765544433 3333345533211000000000            


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhh-c-hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLL-Q-EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                            .+..++....++..+       ...++.....+... + .+.+..........+........+.|.|+.+..+.
T Consensus       205 ------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  271 (405)
T TIGR00891       205 ------RTMVDILYGGEHRIA-------NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGL  271 (405)
T ss_pred             ------hhHHHHHhccchhhh-------hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCC
Confidence                  000000000000000       00000001111111 1 11222223333333444556667889999888887


Q ss_pred             chhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH-HHHhhchhHHHHHHHHHHHHHHhccc
Q 014646          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAFCLSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      +..+. .+.....++.+++.++.+++.||++||     +.+............ .....++.+...+...+.+++.....
T Consensus       272 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (405)
T TIGR00891       272 SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW  346 (405)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence            76544 444667788899999999999999998     555544443322222 22223343444444345555555666


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhH
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  370 (421)
                      +.....+.+.+|++.|++++|+.+...+. |..++|.+.|.+.|+.|.|...+..
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       347 GILPKHLGEYFPTDQRAAGLGFTYQLGNL-GGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             hhHHHHHhhhCCcchhHHHhhHHHHHHHH-HHHHHHHHHHHHHHhccccchhHHh
Confidence            67778889999999999999999777666 8899999999999998866554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.8e-31  Score=245.83  Aligned_cols=350  Identities=12%  Similarity=0.074  Sum_probs=233.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc----chhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+..++.....+.|++|+++
T Consensus        72 ~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~  151 (438)
T TIGR00712        72 IAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE  151 (438)
T ss_pred             HHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence            4677899999999999999999999999999998887764    467788899999999999888888899999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhh-cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++++.+.++|..+++.+.+... ...+||+.|++.++++++..++.+++.||.+++...++.++.+         
T Consensus       152 rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------  222 (438)
T TIGR00712       152 RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR---------  222 (438)
T ss_pred             chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc---------
Confidence            999999999999999999988776544 4568999999999988887777666667644321110000000         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                       ++..    .+ ..++     .+.+      .+.++.  ..+.+++++.++...+..++.....+++..|.|.|+++..+
T Consensus       223 -~~~~----~~-~~~~-----~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  283 (438)
T TIGR00712       223 -NDYP----DD-YNEK-----AEQE------LTAKEI--FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKH  283 (438)
T ss_pred             -cccc----cc-cccc-----cccc------cchHHH--HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccC
Confidence             0000    00 0000     0000      000010  11246788889888777777777777888999999998878


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHH-HHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHh
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA-ATFLGAISCLTAFC--LSSLYGFLALFTVGELLVF  312 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  312 (421)
                      .++... ....+..+.++++.++++++.||++++++   ..... .........+....  ..+.+.........+++..
T Consensus       284 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  360 (438)
T TIGR00712       284 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR---GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY  360 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence            776544 34456677889999999999999965421   11111 11111111111111  1222222222222232221


Q ss_pred             ccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          313 ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ...........+.+|++.|++++|+.+...+..|.+++|.+.|.+.|..| |...+.+..+..+++.+..+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHH
Confidence            11111223566888889999999999766666345689999999999876 77777776665555554444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=2.1e-31  Score=243.32  Aligned_cols=318  Identities=14%  Similarity=0.088  Sum_probs=227.2

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhH--------HHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      ..+++++.|+++||+|||+++..+.++..++.++++++++++        .+++.|+++|++.+...+....++.|++|+
T Consensus        48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (394)
T TIGR00883        48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP  127 (394)
T ss_pred             hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence            456889999999999999999999999999999999999875        478899999999999999999999999999


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhh--------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccch
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  147 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  147 (421)
                      ++|++..++.+.+..+|.++++.++..+.        +.++||+.|++.+++.++...+ ....||+++...++++++  
T Consensus       128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  204 (394)
T TIGR00883       128 GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEKAQEKHK--  204 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHHhccc--
Confidence            99999999999999999999998876653        3568999999877655443322 222243221100000000  


Q ss_pred             hhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhh--HHHHHHHHHHHHHHHHHHHH
Q 014646          148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV--YVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~  225 (421)
                                                     +.             ..+.++.++++.  ++......++..........
T Consensus       205 -------------------------------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (394)
T TIGR00883       205 -------------------------------KK-------------RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT  240 (394)
T ss_pred             -------------------------------cc-------------cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                           00             012333444443  55555555666666777788


Q ss_pred             HhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHH-H-HHHHHh--hchhHHH
Q 014646          226 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI-S-CLTAFC--LSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~  300 (421)
                      +.|.|.++..+.++... .......+...++.++.+++.||++||     +.+.....+... . ......  .++.+..
T Consensus       241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR-----PVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            99999988777775444 344566778889999999999999988     544433222222 2 111111  2344444


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  373 (421)
                      .....+.+++.+...++......|.+|++.|+++.++.+...+.+|..++|.+.|++.|+.|.+...++....
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            5555666666767778888999999999999999998645555558889999999999988755454444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-31  Score=238.58  Aligned_cols=380  Identities=14%  Similarity=0.120  Sum_probs=251.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +|.++|+...+.++||+|||..+.++.++..++.++..++   +++++++++|++.|+..|......+.++.|..|++.|
T Consensus        71 iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~R  150 (485)
T KOG0569|consen   71 IGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLR  150 (485)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhc
Confidence            6889999999999999999999999999888888877654   6899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHH--HhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGG--VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |..-.+.+.+..+|.+++..++.  .+.+...|++.+....+++++..+... +.||+|++.-.. +++..+++...+..
T Consensus       151 G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll~~-k~~~~~A~~sl~~y  228 (485)
T KOG0569|consen  151 GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLP-FLPESPKYLLIK-KGDEEEARKALKFY  228 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHh-cCCCCcchHHHH-cCCHHHHHHHHHHH
Confidence            99999999999999999977763  344556799999999988776655544 459999875432 22222222222333


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHH-----HHHHHHHHHHHHHHHHHhhhHH
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-----VLGYIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  231 (421)
                      +..+++++..+...++.++++.+++.           ..+++++++++..+.-     .+.......+.+....|...++
T Consensus       229 ~G~~~~~~~~e~~~~e~~~~~~~~~~-----------~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~  297 (485)
T KOG0569|consen  229 RGKEDVEAEIEEMLREIEEEELEKKK-----------QISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF  297 (485)
T ss_pred             hCCCcchhHHHHHHHHHHHhcccccc-----------CCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence            33332222222211111111111100           1235566665544432     2222223334556666777777


Q ss_pred             HHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh----ch--hHH---HH
Q 014646          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SS--LYG---FL  301 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~---~~  301 (421)
                      ++. |.++..+ ......+....+.++++.++.||.|||     ++++.+..++.+..+++...    ..  .|.   .+
T Consensus       298 ~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-----pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i  371 (485)
T KOG0569|consen  298 KTA-GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-----PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI  371 (485)
T ss_pred             HHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            664 4554443 555667788899999999999999999     77776666655554433221    11  111   23


Q ss_pred             HHHHHHHHHHhccccc-hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          302 ALFTVGELLVFATQAP-VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      +..++..+..+...++ .+.+.+|.+|++.|+.++++.....+. ..++-...+..+.+..|.+  .|+.+.+.  +...
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~-~~fiv~~~fp~l~~~~g~~--~filF~i~--~~~~  446 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWL-SNFIVGFAFPPLQNVIGPY--VFILFVIP--LAIF  446 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcch--hhHHHHHH--HHHH
Confidence            3344444444444444 466677888889999999999777776 6666677888899988852  34444333  3333


Q ss_pred             Hhhhheeeec-ccccccccccccccC
Q 014646          381 IWFVGIFLKS-IDKFNEDGENQISLD  405 (421)
Q Consensus       381 ~~~~~~~~~~-~~~~~~~~~~~~~~~  405 (421)
                      ..+.++++|| |+|+.+|..++.+++
T Consensus       447 ~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  447 LIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            3444557787 888877766655433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.4e-31  Score=249.65  Aligned_cols=342  Identities=13%  Similarity=0.077  Sum_probs=243.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccC-CCCCchh
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTA   80 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~   80 (421)
                      ++++++++++|+++||+|||++++.+.+++.++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|++
T Consensus        52 l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~  131 (495)
T PRK14995         52 LVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNM  131 (495)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            466788999999999999999999999999999999999999999999999999999998888888787765 6789999


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcc-------c
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------S  153 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~  153 (421)
                      +++++.....+|..+||.+++.+.++.||||.|++...+.++..++.++..|+.+++.  .++.+.......       .
T Consensus       132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~  209 (495)
T PRK14995        132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLV  209 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887777776666667643211  011100000000       0


Q ss_pred             ccccccCCCcccccc-chh-------hhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014646          154 EGSEASNLNDHVSED-ISD-------QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      ............... ...       -......+.+        .++...+ .+++++|.+....+..++......+...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~--------~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~  280 (495)
T PRK14995        210 YSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA--------ASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFEL  280 (495)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHH
Confidence            000000000000000 000       0000000000        0011112 3577888888877777777777788888


Q ss_pred             HhhhHHHHhhccchhhHHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh---hchhHHHH
Q 014646          226 WGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LSSLYGFL  301 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  301 (421)
                      +.|.|+++..+.++.+... .....++..++.++.|++.||+++|     +.+..+..+..+.......   ..+.+...
T Consensus       281 ~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  355 (495)
T PRK14995        281 LMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----LVATGGMALSALSFYGLAMTDFSTQQWQAW  355 (495)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            9999999999998766643 4556678889999999999999987     5555554444443332221   12344445


Q ss_pred             HHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ...++.+++.+...++......+.+|+++++.+.++.+...+. |..+|+.+.|.+.++
T Consensus       356 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-G~~~G~ai~g~i~~~  413 (495)
T PRK14995        356 GLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYEL-GAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            5667778888888888888888999999999999999766666 888899899888774

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.2e-31  Score=251.57  Aligned_cols=367  Identities=14%  Similarity=0.141  Sum_probs=228.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++++++++++|+++||+|||++++++.+++.++.+++.++   .+++.+++.|+++|++.+...+....++.|++|+++|
T Consensus        82 ~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  161 (481)
T TIGR00879        82 VGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALR  161 (481)
T ss_pred             HHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhh
Confidence            5678999999999999999999999999999999998554   4566899999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHH---HHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++++++.+..+|..+++.++   ....+..+||+.|++.++..++.. +..++.||+++....+++.+..  .+...+
T Consensus       162 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~--~~~~~~  238 (481)
T TIGR00879       162 GALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEA--RKSLAR  238 (481)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHH--HHHHHH
Confidence            9999999999999999999999   676677899999999766554443 4444557754321111111110  000000


Q ss_pred             ccccCCCc-cccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 014646          156 SEASNLND-HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                      ....+..+ +..+...........+.+..+   ...++.+...+. .+++.++...+..+...........+.|.+.++ 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  313 (481)
T TIGR00879       239 LRGTSGEDKELLDELELIDIKRSIEKRSVQ---PSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-  313 (481)
T ss_pred             HhCCCCCcHHHHHHHHHHHHHHHHHHhhcc---ccHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-
Confidence            00000000 000000000000000000000   001111111111 123344444444444444445556677777665 


Q ss_pred             hccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH---h-hch------hHHHHHH
Q 014646          235 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---C-LSS------LYGFLAL  303 (421)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~~  303 (421)
                      .+.+.... .......++.+++.++.+++.||++||     +.+.....+..+..+...   . ..+      .......
T Consensus       314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (481)
T TIGR00879       314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR-----PLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVF  388 (481)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHH
Confidence            45554333 445667788889999999999999998     555544444443333322   1 111      2222233


Q ss_pred             HHHHHHHHhc-cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          304 FTVGELLVFA-TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       304 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ..+...+.+. ..+....++.|.+|++.|++++++.+...+. |.+++|.+.+.+.++.+ +...|++.+++.+++.+..
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l-g~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       389 ILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL-ANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             HHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHH
Confidence            3333333333 3344455668888889999999999766666 88899999999998766 6677777766655555444


Q ss_pred             h
Q 014646          383 F  383 (421)
Q Consensus       383 ~  383 (421)
                      +
T Consensus       467 ~  467 (481)
T TIGR00879       467 Y  467 (481)
T ss_pred             h
Confidence            3

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=8.9e-31  Score=239.41  Aligned_cols=310  Identities=13%  Similarity=0.037  Sum_probs=229.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...+...+++.|++|+++|.++
T Consensus        59 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~  138 (406)
T PRK15402         59 AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKI  138 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||++++.    +++ .              
T Consensus       139 ~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~--------------  199 (406)
T PRK15402        139 TALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV----GEK-L--------------  199 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccc-c--------------
Confidence            999998889999999999999999899999999998887776665555556532110    000 0              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                 +.++..++++.++++|.++...+..++..........+.|.++.+..+.++..
T Consensus       200 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~  252 (406)
T PRK15402        200 ---------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYE  252 (406)
T ss_pred             ---------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH
Confidence                                       00011234567788998888777666666666666677888888877877654


Q ss_pred             HHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHHHHhccc
Q 014646          242 MMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----LSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      ... .....++.+++.++.+++.||+++|     +.+................     ..+.+.......+.+++.+...
T Consensus       253 ~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        253 YGLLQVPVFGALIAGNLTLARLTSRRPLR-----SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            432 2344567788899999999999987     5554444433333222221     1233334445555666666555


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  364 (421)
                      +........ .++++++++.+.++..... +..+|+.+.+.+.+..+.+
T Consensus       328 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~  374 (406)
T PRK15402        328 AGLYRLTLF-SSDVSKGTVSAAMGMLSML-IFTVGIELSKHAYLGGGNG  374 (406)
T ss_pred             hhHHHHHhh-hccccccHHHHHHHHHHHH-HHHHHHHHHHhcccCCchH
Confidence            555544433 3458999999999766665 7788999999998876644

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=8e-31  Score=238.09  Aligned_cols=303  Identities=14%  Similarity=0.112  Sum_probs=217.3

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...|...+++.|++|+++|+++++
T Consensus        59 ~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~  138 (400)
T PRK11646         59 QQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFS  138 (400)
T ss_pred             HHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCc
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND  163 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (421)
                      +.....++|..+||.+++.+. .+|||+.|++.++..++..++..+..||...      +++..                
T Consensus       139 ~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~------~~~~~----------------  195 (400)
T PRK11646        139 LLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL------STVRT----------------  195 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc------cccch----------------
Confidence            999999999999999999998 6799999999988776665555544454110      00000                


Q ss_pred             cccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHH
Q 014646          164 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMM  243 (421)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (421)
                                                  +..+++++++++|.++...+..+...........+.|.|.++.++.+.....
T Consensus       196 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  247 (400)
T PRK11646        196 ----------------------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKW  247 (400)
T ss_pred             ----------------------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHH
Confidence                                        0012355667788777655544444444444556789998887664432223


Q ss_pred             HHhhHhHHHHHHHhHHHHHHHh-hcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhh
Q 014646          244 FGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ......+....+....+++.|| .+.+     +.+..+..+..+........++.+.......+.+.+.+...+......
T Consensus       248 l~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~  322 (400)
T PRK11646        248 MYAIEACLSLTLLYPIARWSEKRFRLE-----HRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLS  322 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3334444444444444555544 4433     333333333333333333444444444444555566666667778889


Q ss_pred             hcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc
Q 014646          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  363 (421)
                      .+..|+++|++++|+.+...+. |..+||.+.|++.|+.++
T Consensus       323 ~~~~p~~~~g~~~g~~~~~~~~-g~~ig~~l~G~l~~~~~~  362 (400)
T PRK11646        323 ASLADARARGSYMGFSRLGLAL-GGAIGYIGGGWLFDLGKA  362 (400)
T ss_pred             HhcCCcccchhhhhHHHHHHHH-HHHhcccchHHHHHHHhh
Confidence            9999999999999999766666 889999999999998653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=9.7e-31  Score=238.80  Aligned_cols=317  Identities=13%  Similarity=0.071  Sum_probs=222.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc--------chhHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++++++++.|+++||+|||++++.+.++++++.+.+.++        .+++.+++.|+++|++.+...+....++.|++
T Consensus        62 ~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  141 (399)
T PRK05122         62 LATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV  141 (399)
T ss_pred             HHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc
Confidence            5678899999999999999999999999888877765543        25778999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccc
Q 014646           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      |+++|++++++.+.+..+|.++|+.+++.+.+.+|||+.+++..+..++..+.. ...|+.+     +++++ .      
T Consensus       142 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~-~------  208 (399)
T PRK05122        142 GALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVP-----PVKGE-R------  208 (399)
T ss_pred             ChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCC-----CCCcc-c------
Confidence            999999999999999999999999999999999999999888766543322211 1112110     00000 0      


Q ss_pred             ccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014646          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                                               .+.++.++  ..+.......+..........+.|.|..+
T Consensus       209 -----------------------------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (399)
T PRK05122        209 -----------------------------------------LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA  245 (399)
T ss_pred             -----------------------------------------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     00111111  11111122223344455566777877765


Q ss_pred             hhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhc
Q 014646          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      . +.+.. ........++.+++.++.+++.||+++|     +.+.....+...........++.+...+...+.+++.+.
T Consensus       246 ~-~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~  318 (399)
T PRK05122        246 R-GWDGA-ALALTLFGVAFVGARLLFGNLINRLGGL-----RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSL  318 (399)
T ss_pred             c-ccccc-hHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHH
Confidence            4 33322 2233456677788999999999999987     666555555555444444455555555556667777766


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+.......+..|+++|+++.|+++...+. |..++|.+.|.+.|..| ++..+...+.+.+++.+...
T Consensus       319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        319 VFPALGVEAVKRVPPQNRGAALGAYSVFLDL-SLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHH
Confidence            6666666777888999999999999766666 77778889999999876 77777777666655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.6e-30  Score=235.71  Aligned_cols=322  Identities=11%  Similarity=0.054  Sum_probs=226.8

Q ss_pred             cccchhhHHHhhhhhcCchHHHH-HHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +..+.+++.|+++||+||||.++ .+.++..++.++++++++++.+++.|+++|.+.+...|...+++.|+.|+++|++.
T Consensus        45 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~  124 (375)
T TIGR00899        45 VGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAV  124 (375)
T ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhH
Confidence            45677899999999999988755 45666677788889999999999999999988888888888889999887777654


Q ss_pred             --HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           82 --LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 --~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                        .+....+.++|.+++|.+++.+.+.++||+.|++.+++.++..++.++..||.+++..  ++.+ .            
T Consensus       125 ~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~------------  189 (375)
T TIGR00899       125 MFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP--GALT-R------------  189 (375)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc--cccC-c------------
Confidence              6788888999999999999999998999999999998877777776666676432110  0000 0            


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                         .+.++.++++.++......++..........+.|.++++..+.++
T Consensus       190 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  234 (375)
T TIGR00899       190 -----------------------------------LEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPD  234 (375)
T ss_pred             -----------------------------------chhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCH
Confidence                                               011223455555554444444444445556678888888777776


Q ss_pred             hhHH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          240 ADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .... .........+++.++.+++.||+++|     +.+.................++.+.......+.+++.+...+..
T Consensus       235 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       235 KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR-----RLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5442 23344455677788999999999988     55554444444333333334455545545555566666555666


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ..+..+..| +++++++++.+...+. |..++|.+.|.+.|..| ++..+...+++.+++.+..
T Consensus       310 ~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       310 MLYFQDLMP-GRAGAATTLYTNTGRV-GWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHhCc-chhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence            666777665 4567999999777665 88999999999999876 7777777766655555544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=1.5e-30  Score=237.18  Aligned_cols=319  Identities=10%  Similarity=0.030  Sum_probs=220.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|++++++++|+++||+|||++++.+.++++++++++++++|++.++++|+++|++.+...+....++.|++|+++|+++
T Consensus        62 ~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~  141 (413)
T PRK15403         62 AGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKL  141 (413)
T ss_pred             HHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999987777777889999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..+||.+++.+.++.|||+.|++.+++.++..+..++..||+++.   ++++. .              
T Consensus       142 ~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-~--------------  203 (413)
T PRK15403        142 MAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-S--------------  203 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC-C--------------
Confidence            99999999999999999999999888999999999988777766555555764321   00000 0              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                  .++..++++.+++||.++...+...+.......+..+.|.++++.++.++..
T Consensus       204 ----------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~  255 (413)
T PRK15403        204 ----------------------------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ  255 (413)
T ss_pred             ----------------------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH
Confidence                                        0011245677889999998888777777777788888999999988888665


Q ss_pred             HHHH-hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHH--HHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHhcccc
Q 014646          242 MMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSA--ATFLGAISCLTA--FCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       242 ~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ..+. .....+.+++..+.+++.++..+++    .....  ....+.......  ...++.+..+...++.+++.+...+
T Consensus       256 ~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p  331 (413)
T PRK15403        256 FAWTQVPVFGAVIVANAIVARFVKDPTEPR----FIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP  331 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence            5433 3344555666666666554333321    11111  111111111111  1122222234455555666666655


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      ........ -.+..+|++.++.+..... +...++...+++.++.  -..++.....+
T Consensus       332 ~~~~~al~-~~~~~~G~a~a~~~~~~~~-~~~~~~~~~g~~~~~~--~~~~~~~~~~~  385 (413)
T PRK15403        332 TLFRFTLF-SNNLPKGTVSASLNMVILM-VMAVSVEIGRWLWFNG--GRLPFHLLAVV  385 (413)
T ss_pred             HHHHHHhc-cCCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHcC--CchHHHHHHHH
Confidence            55533321 1223478899988766655 5566777888877762  22444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=2.1e-31  Score=239.54  Aligned_cols=305  Identities=19%  Similarity=0.288  Sum_probs=225.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        43 ~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~  122 (352)
T PF07690_consen   43 LGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRA  122 (352)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhc
Confidence            46778999999999999999999999999999977777768888999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+.++|.+++|.+++.+.+..+||+.|++.+++.++..++..++.++.++..+.+++.+..              
T Consensus       123 ~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--------------  188 (352)
T PF07690_consen  123 FGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--------------  188 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------
T ss_pred             cccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc--------------
Confidence            999999999999999999999999999999999999988888775555555433221111111000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc-hh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-NA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (421)
                                   .            +..++..+.++.++++|.+|......++..........+.|.|+.+..+.+ ..
T Consensus       189 -------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  243 (352)
T PF07690_consen  189 -------------S------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPS  243 (352)
T ss_dssp             ---------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHH
T ss_pred             -------------c------------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHH
Confidence                         0            000000012556667777765555556666677778899999988888888 44


Q ss_pred             hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH---HhhchhHHHHHHHHHHHHHHhcccc
Q 014646          241 DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---FCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 ~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .. .+..+..+.++++.++.+++.||++++     +................   ...++....+....+.+++.+...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  318 (352)
T PF07690_consen  244 QAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFP  318 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44 445667788888899999999999886     33333333322222222   2223444555566667778888888


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCch
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      .......+.+|+++++++.|+.+...+. |..++|
T Consensus       319 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~igP  352 (352)
T PF07690_consen  319 ILFSLIQELVPPEYRGTAFGLFNSIGSL-GGIIGP  352 (352)
T ss_dssp             HHHHHHHCCCHTCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHCC
Confidence            8999999999999999999999766665 766655

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.3e-30  Score=235.65  Aligned_cols=304  Identities=16%  Similarity=0.172  Sum_probs=227.5

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+++..+.++..++.+.++++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        51 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (385)
T TIGR00710        51 LGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRI  130 (385)
T ss_pred             HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..+++.+++.+.++.+||+.|++.++..++..+..++..||.++..    +++..              
T Consensus       131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------  192 (385)
T TIGR00710       131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----ARIQI--------------  192 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----ccCCH--------------
Confidence            999999999999999999999999899999999998887777666666555532110    00000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                   ++..+.+++++++|.++...+..............+.|.++++..+.++..
T Consensus       193 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  243 (385)
T TIGR00710       193 -----------------------------STYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSV  243 (385)
T ss_pred             -----------------------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHH
Confidence                                         000123556778888887777666666667777788899988888877655


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHHHhccc
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      . .......++.+++.++.+++.||+++|     +.+........+..+.....     .+.........+.+++.+...
T Consensus       244 ~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       244 FGLLFALNIIAMIFGGFLNGRFIKKWGAK-----SLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            4 344566788899999999999999987     44443333333322222111     122233334445556666666


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +.......+..| +.++++.++.+......|.+.+| +.+.+.+
T Consensus       319 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~  360 (385)
T TIGR00710       319 SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG  360 (385)
T ss_pred             HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence            666677777665 67899999998777776666655 4554444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10504 putative transporter; Provisional

Probab=99.98  E-value=2.6e-30  Score=241.06  Aligned_cols=343  Identities=13%  Similarity=0.092  Sum_probs=236.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.+++|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        56 ~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (471)
T PRK10504         56 LTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAA  135 (471)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhc-c-----cc-
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS-V-----SE-  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~-----~~-  154 (421)
                      +++.....++|..++|.+++.+.++.|||+.|++......+..++.....|+....   +.+.+...... .     .. 
T Consensus       136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~  212 (471)
T PRK10504        136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTL  212 (471)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877766666655554543211   00101000000 0     00 


Q ss_pred             cccccCCCccccccchhh--------hhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 014646          155 GSEASNLNDHVSEDISDQ--------ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  226 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (421)
                      ..+..+............        .....++...+        +...+. ++++||.+.......++..........+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~  283 (471)
T PRK10504        213 ALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN--------RALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFM  283 (471)
T ss_pred             HHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC--------CCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            000000000000000000        00000000000        001122 4678999988887777777777777788


Q ss_pred             hhhHHHHhhccchhhHH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh---chhHHHHH
Q 014646          227 GPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---SSLYGFLA  302 (421)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  302 (421)
                      .|.|++...+.++.... ......++.+++.++.+++.||+++|     +.+..+..+..+........   ++.+....
T Consensus       284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
T PRK10504        284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----RVLVATTLGLALVSLLFMLVALLGWYYLLPF  358 (471)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            89999887777765443 33445566677778899999999988     66665555444443333322   22222233


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ...+.+.+.+...+.......+.+|++.++.++++.+..... |..+|+.+.|.+.+..+
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQL-SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence            344455666666777788888899999999999999766666 88999999999988765

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.98  E-value=2e-30  Score=237.79  Aligned_cols=326  Identities=14%  Similarity=0.132  Sum_probs=235.9

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+ ..+....++.|++|+++|+++
T Consensus        65 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  143 (408)
T PRK09874         65 LFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWA  143 (408)
T ss_pred             HHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHH
Confidence            3567889999999999999999999999999999999999999999999999999865 567777889999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|.+++.+.+..+||+.|++.+++.++..+..++..||..+..   ++++..              
T Consensus       144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------  206 (408)
T PRK09874        144 LGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEML--------------  206 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhhh--------------
Confidence            999999999999999999999998889999999999887776666666555432110   000000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHH-HHHHHHHHHHHHHHHHHhhhHHHHhhccchh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                                 +    .++..+.++++.++.. ................+.|.|..+..+....
T Consensus       207 ---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (408)
T PRK09874        207 ---------------------------H----MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSN  255 (408)
T ss_pred             ---------------------------H----HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence                                       0    0011223455554432 2223333444445566777787775443321


Q ss_pred             h----HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhcccc
Q 014646          241 D----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 ~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .    ..+..+..++.+++.+..+++.||+++|     +.+........+..+.....++.+...+...+.+++.+...+
T Consensus       256 ~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (408)
T PRK09874        256 IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLP  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHH
Confidence            1    1223445567778888899999999988     665555555544444444445555555555666777777777


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .......+..|++.+++..++.+...+. |..++|.+.|.+.+..| |...|...+++.+++.+...
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        331 AVQTLLVYNSSNQIAGRIFSYNQSFRDI-GNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHhCCcccceeeehHHHHHHHH-HHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence            7777788888889999999999766665 88999999999999876 77888877776666555443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.4e-31  Score=242.02  Aligned_cols=319  Identities=17%  Similarity=0.169  Sum_probs=227.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +||+++.+++|.+.||++..+.+....+++++..++....+|++.+++.|+++|+.++..+|....+++.|+.++||++.
T Consensus        92 v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r  171 (495)
T KOG2533|consen   92 VGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLR  171 (495)
T ss_pred             HHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhh
Confidence            68999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHh------hcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVV------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l------~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++.+..++|.++|++++..+      ....||||.|++.++++++.++++++++|+.+....-.++.+.         
T Consensus       172 ~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek---------  242 (495)
T KOG2533|consen  172 MGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK---------  242 (495)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH---------
Confidence            9999999999999999999886      3456999999999999999999999999886542210000000         


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                 +...++.++++.+...++       ..+..+++.+++|.+|...+..++.....+++.+|+|.++.+..
T Consensus       243 -----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~  304 (495)
T KOG2533|consen  243 -----------ELVVERLRESPSGGIENK-------FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG  304 (495)
T ss_pred             -----------HHHHHHHHhccCCCcccc-------cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC
Confidence                       000000000000000000       11356788899999999999999999999999999999999955


Q ss_pred             ccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhc----ccccchhhHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 014646          236 HMSNADM-MFGGVTIVCGIVGTISGGFILDQMG----ATISNAFKLLS-AATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      +++..+. .+.....++++++.+++|+++||+.    +|     .... ...+........+..................
T Consensus       305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~-----~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~  379 (495)
T KOG2533|consen  305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR-----LLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPY  379 (495)
T ss_pred             CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcch
Confidence            5765444 6667888999999999999999954    33     3322 2223333333333333333333333333334


Q ss_pred             HHhccccchhhhhhcccCcchh-HHHHHHHHHHHHHhccCCchhH
Q 014646          310 LVFATQAPVNYVCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      +.....+.......+...++.| -+..+......+. ++.++|.+
T Consensus       380 ~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s-~~~~~~~~  423 (495)
T KOG2533|consen  380 GLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGS-AGAISGQL  423 (495)
T ss_pred             hhHHHHHHHHhhccccccchHHhHHHHhhhhcchhH-HHHhhhhh
Confidence            4444455556666666655433 3334444333444 33433433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.98  E-value=1.7e-30  Score=244.05  Aligned_cols=350  Identities=11%  Similarity=0.094  Sum_probs=218.3

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++
T Consensus        66 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  145 (496)
T PRK03893         66 ISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKA  145 (496)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..+++.+++.+.+.++||+.|++..+.. +..++.....||.++...++++.+ .              
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~-~--------------  209 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI-IFALWLRKNLPEAEDWKEKHAGKA-P--------------  209 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHHHHHHHhCCCchhhhhhccccc-c--------------
Confidence            999999999999999999999999999999998754432 222222222344322110000000 0              


Q ss_pred             Cccccccchhhhhhhhhcccc-------cchhhhhhhhhh-------------hhh-H--hhhchhhHHHHHHHHHHHHH
Q 014646          162 NDHVSEDISDQASERSIKSIG-------ESRFLNQLSQFS-------------QDT-K--VLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------------~~~-~--~l~~~~~~~~~~~~~~~~~~  218 (421)
                      .++..+.....+.........       ...........+             ..+ .  ...+.+.........+....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (496)
T PRK03893        210 VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFL  289 (496)
T ss_pred             chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence            000000000000000000000       000000000000             000 0  00011111111111111111


Q ss_pred             HHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh--c
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--S  295 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  295 (421)
                      .......++|.|+++..+.+..+. .+.....++.+++.++.+++.||+++|     +.+..+..+..+..+.....  .
T Consensus       290 ~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~  364 (496)
T PRK03893        290 YSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR-----KAYVCSLLISQLLIIPVFAIGGA  364 (496)
T ss_pred             ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHhhcccc
Confidence            122355788999987777776544 445667788899999999999999988     55555444444333322222  2


Q ss_pred             hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      +.+.......+.++......+....++.+.+|++.|++++|+.+...+. |..++|.+.|.+.|..| +...+...+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~lgp~l~g~l~~~~g-~~~~~~~~~~~  441 (496)
T PRK03893        365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGAL-GGALAPILGALIAQRLD-LGTALASLSFS  441 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhH-HHHHHHHHHHHHhccCC-hHHHHHHHHHH
Confidence            2222222222223333334455677788989999999999999766665 88899999999999876 55555444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.98  E-value=2e-30  Score=234.88  Aligned_cols=331  Identities=14%  Similarity=0.080  Sum_probs=227.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+.++++|+++||+|||++++++.++.+++++.++++.+.   ++.|+++|++.+...|...+++.|++|+++|+++
T Consensus        49 l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a  125 (393)
T PRK11195         49 LAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKA  125 (393)
T ss_pred             HHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            5678899999999999999999999999999999888777664   7799999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|.++||.+++.+.+. .|+..+.+.+...++. .+..+..||.+++.++++ .+..              
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~--------------  188 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS-WNPI--------------  188 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC-CCHH--------------
Confidence            9999999999999999999999885 4888887776554333 333444565322110000 0000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                ...++..+..+.++++|.+........+............|.+.++..+.++..
T Consensus       189 --------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~  242 (393)
T PRK11195        189 --------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQ  242 (393)
T ss_pred             --------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence                                      000111223456677777665554444444445555666777888888887655


Q ss_pred             HH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 MM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      .. ......++.+++.+..+++.||.+++     +.+..+.... .........++.+.......+.+++.+...++..+
T Consensus       243 ~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-----~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~  316 (393)
T PRK11195        243 PAYLQAVVAIGIAVGAGAAARLVTLETVL-----RVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNA  316 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccc-----chHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            53 34566677888888888888877665     4444433332 22222233344444455555667777776777788


Q ss_pred             hhhcccCcch-hHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhee
Q 014646          321 VCLHSVKPSL-RALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIF  387 (421)
Q Consensus       321 ~~~~~~~~~~-~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (421)
                      ..++..|++. +|++.++.|...+. +..++..+.+.+ +..| .+..+++.....+....+.+.+++
T Consensus       317 ~~q~~~~~~~~~g~~~a~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK11195        317 LLQHRGHVLVGAGHSIAVQNFNENL-AMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLWRW  381 (393)
T ss_pred             HHHhhCcccccchhHHHHHhHHHHH-HHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877655444 79999999877666 878888777755 4444 556666666665565555555543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.98  E-value=8.6e-30  Score=228.49  Aligned_cols=321  Identities=13%  Similarity=0.031  Sum_probs=236.9

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-----chhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +++.++.++.|++.||+|.|+++.++.+++++.++..+++     ++++.+++.|++.|++ +..++.....+++|+|++
T Consensus        81 l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~  159 (462)
T PRK15034         81 VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA  159 (462)
T ss_pred             HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh
Confidence            4567888999999999999999999999999999999987     8999999999999998 668889999999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhh-----c-------------ccchhHHHHHhHHHHHHHHHHHHhccccccccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVG-----S-------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  138 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~-------------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  138 (421)
                      +||+++|+.....++|..+++++...+.     +             ..+||.+.++..++.++..++.++..++.+.  
T Consensus       160 ~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--  237 (462)
T PRK15034        160 KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--  237 (462)
T ss_pred             HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--
Confidence            9999999998777777776665554322     1             3358888888888877777777766433110  


Q ss_pred             CCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHH
Q 014646          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  218 (421)
                          ++. .                                              .++.+..+|+|..|.+.+.+++.+.
T Consensus       238 ----~~~-~----------------------------------------------~~~~~~vlk~~~~Wllslly~~tFG  266 (462)
T PRK15034        238 ----SRA-S----------------------------------------------IADQLPVLQRLHLWLLSLLYLATFG  266 (462)
T ss_pred             ----ccc-C----------------------------------------------HHHHHHHhCCCchhHHHHHHHHHHH
Confidence                000 0                                              1235568899999999999999988


Q ss_pred             HHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH-HHhh---
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AFCL---  294 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---  294 (421)
                      .+.++..++|.|.++.+.... ......+..+...+.++++|+++||+|++     +.+........+.... ....   
T Consensus       267 ~fvg~s~~lp~~~~~~~~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~-----~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        267 SFIGFSAGFAMLAKTQFPDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGV-----RVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHcChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCch-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999988663221 11223344577788899999999999998     6655554433333221 1111   


Q ss_pred             --chhHHHHHHHHHHHHHHhccccchhhhhhcccCc---------------------chhHHHHHHHHHHHHHhccCCch
Q 014646          295 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP---------------------SLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                        .+.+...+.+....++.+......+-.+.+.+|+                     ++.|.+.|+.. ....+|+++-|
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~-a~G~~Ggf~~p  419 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS-AIGAVGGFFIP  419 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH-HHHHcccchhh
Confidence              2344445555455566667777777777777763                     15678888885 44445888889


Q ss_pred             hHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          352 PLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       352 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+.|...+..|++...++.+....+++.++..
T Consensus       420 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        420 QAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888777666655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.98  E-value=1e-30  Score=245.18  Aligned_cols=343  Identities=14%  Similarity=0.151  Sum_probs=246.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.++.|+++||+|||++++.+.++..++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~  127 (485)
T TIGR00711        48 LANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRA  127 (485)
T ss_pred             HHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhh-------cccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA-------SVSE  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~  154 (421)
                      ++++..+..+|..++|.+++++.++++||+.|++.+.+.++..++.++..|++++..  .++.+.....       ....
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~  205 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLY  205 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887777766666666532211  1111100000       0000


Q ss_pred             cccccCCCccccc-cchhh-h-------hhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014646          155 GSEASNLNDHVSE-DISDQ-A-------SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       155 ~~~~~~~~~~~~~-~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      ...+.+..+...+ ..... .       .....+.+.+        +... ..+++++|.++...+..++.....+....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (485)
T TIGR00711       206 GLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDD--------NPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFY  276 (485)
T ss_pred             HHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCC--------CCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence            0000000000000 00000 0       0000000000        0011 12467888888888877888888888889


Q ss_pred             HhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-h-h--chhHHH
Q 014646          226 WGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-C-L--SSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~  300 (421)
                      +.|.|+++..+.++... .......++.+++.++.+++.||+++|     +.+..+..+..+...... . .  .+.+..
T Consensus       277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (485)
T TIGR00711       277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFYWRAFTFTPDTPFLAI  351 (485)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence            99999999888886555 344566788899999999999999988     666555555554444433 1 1  233344


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .....+.+++.+...++......+.+|+++++++.|+.+...+. |+.+|+.+.+.+.++.
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL-GGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            44556677777777777777788889999999999999777665 8889999999888753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.98  E-value=6.3e-30  Score=232.78  Aligned_cols=301  Identities=15%  Similarity=0.078  Sum_probs=209.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||++++.+.++..++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        49 ~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~  128 (392)
T PRK10473         49 AGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKV  128 (392)
T ss_pred             HHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++.++..||+++..   ++++..              
T Consensus       129 ~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~--------------  191 (392)
T PRK10473        129 LSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---APAASS--------------  191 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cCCccc--------------
Confidence            999999999999999999999888889999999999888777777666666532110   000000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                     ..+..++.++++.++...+...+.......+..+.|.+.++..+.++..
T Consensus       192 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  240 (392)
T PRK10473        192 -------------------------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGE  240 (392)
T ss_pred             -------------------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHH
Confidence                                           0012334456676665444444444444455667788888777877654


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.+++.||+++|     +.+.....+.....+......+.+.......+...+.+...+..  
T Consensus       241 ~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--  313 (392)
T PRK10473        241 YAIIMALTAGVSMTVSFSTPFALGIFKPR-----TLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--  313 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--
Confidence            4 344566788889999999999999988     66555554444444433333333333333333333333333222  


Q ss_pred             hhhcccCcchh-HHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          321 VCLHSVKPSLR-ALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       321 ~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ...+..|.++| +.+.++.    +. +..+++.+.+++.+..|
T Consensus       314 ~~~~~~~~~~~~g~~~~~~----~~-~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        314 MSQALGPFSLRAGVASSTL----GI-AQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHhccCcccccHHHHHH----HH-HHHHHHHHHHHHHHHhc
Confidence            22333344333 3333333    22 55566778888888776

>TIGR00897 2A0118 polyol permease family

Probab=99.98  E-value=1.4e-29  Score=230.72  Aligned_cols=327  Identities=13%  Similarity=0.170  Sum_probs=226.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhh---cc-cchhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS-SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++.+++++.|+++||+|||+++..+.++++++++++   ++ .++++.+++.|+++|++.+...+.....+.+++|+++
T Consensus        59 ~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~  138 (402)
T TIGR00897        59 IAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN  138 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence            4678899999999999999999999999999887654   23 3578889999999999998888888888999999999


Q ss_pred             chhHHHHHHhHHHHHh-HHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           78 KTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++|+.+.+.++|. +++|.+++.+.+..||+..++......++..++.+++.++.++    +++.+..         
T Consensus       139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------  205 (402)
T TIGR00897       139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT----PQHMQTR---------  205 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC----cccccCC---------
Confidence            9999999999999997 6899999999888897766555544333333333443333111    0000000         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                +                     +..+..+.++.++++|.++...+..++.....++..++.|.|.++ .+
T Consensus       206 ----------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g  253 (402)
T TIGR00897       206 ----------E---------------------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LG  253 (402)
T ss_pred             ----------c---------------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence                      0                     000011235567889999888777777777788888999999866 67


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHH-HHHHHHHHH-HHHHH----hhchhHHHHHHHHHHHH
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAIS-CLTAF----CLSSLYGFLALFTVGEL  309 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~  309 (421)
                      .+..+. .......+++.++.+..|+++||++||     +... .......+. ..+..    ..++.+...+...+.++
T Consensus       254 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~  328 (402)
T TIGR00897       254 FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-----NTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGI  328 (402)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            775444 334566788899999999999999987     3322 111111111 11111    11233444444555555


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +.+.. .+......+ .++++|+++.|+.|...+. |..++|.+.|.+.|..| +...+++.+++.+++.++.
T Consensus       329 ~~~~~-~~~~~~~~~-~~~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       329 FLAGY-VPLAAVFPT-LAPKHKGAAMSVLNLSAGL-SAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHH-HHHHHHHHh-hCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHH
Confidence            55443 334444444 5677999999999877776 88899999999999877 5566676666655554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=1.3e-30  Score=238.39  Aligned_cols=334  Identities=16%  Similarity=0.197  Sum_probs=229.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++
T Consensus        63 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~  142 (398)
T TIGR00895        63 IGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTA  142 (398)
T ss_pred             HHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchh
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..+++.+++.+.+..+||+.|++.+++.++..++.+...||+++...++++++..   +..++......
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  219 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVR---RIVNAIAPQMQ  219 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHH---HHHHHHHHhcc
Confidence            999999999999999999999999999999999997776666666666667654321111000000   00000000000


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      .++ ++...    ++..+.       +..++..+..++..+.+..+...+..++..........+.|.+. +..+.++..
T Consensus       220 ~~~-~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  286 (398)
T TIGR00895       220 AEA-QSALP----EQKATQ-------GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSL  286 (398)
T ss_pred             ccc-ccccc----cccccc-------chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence            000 00000    000000       00011111111111223334444444555566667778888544 445666443


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .......++.+++.++.+++.||+++|     ..............++.....+.+......++.+++.+...+....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  361 (398)
T TIGR00895       287 AATGGALFNFGGVIGSIIFGWLADRLGPR-----VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYA  361 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 445667788899999999999999986     4443333333333333332445555566666777777778888899


Q ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      +..+.+|+++|+++.|+.+...+. |..++|.+.|++
T Consensus       362 ~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~G~l  397 (398)
T TIGR00895       362 LMALFYPTAIRATGVGWAIGIGRL-GAIIGPILAGYL  397 (398)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHhHHhc
Confidence            999999999999999999766665 888999888865

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.4e-29  Score=216.25  Aligned_cols=322  Identities=15%  Similarity=0.110  Sum_probs=255.2

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhH---HHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW---SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.-++.|.+.||+|.|++..+++++..+-++..+++.+.+   ++++.+++.|++.+ .+.....++++|+||+++|.+
T Consensus        63 allRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~A  141 (417)
T COG2223          63 ALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLA  141 (417)
T ss_pred             HHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHH
Confidence            45668899999999999999999999999999999886555   99999999999877 677889999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccc---hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~g---wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +|+.. ..|+|..+...++..+....+   ||....+..+..++..++.++...+.+..+...++.+             
T Consensus       142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-------------  207 (417)
T COG2223         142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-------------  207 (417)
T ss_pred             HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc-------------
Confidence            99999 889999999999999988888   9999999988888888888877644332211111000             


Q ss_pred             cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Q 014646          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                                         ...++.++++++.|.+.+.++.....+.++..++|.|++++++.+
T Consensus       208 -----------------------------------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~  252 (417)
T COG2223         208 -----------------------------------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLS  252 (417)
T ss_pred             -----------------------------------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                                               023667889999999999999999999999999999999999999


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHH
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALFTVGELL  310 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  310 (421)
                      .... .+.....+.+.+.++++|+++||+|.+     +........+.++.......       .+.......+.....+
T Consensus       253 ~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~  327 (417)
T COG2223         253 PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVF  327 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHH
Confidence            7665 555667778888999999999999988     55555554444444333322       3445555556666777


Q ss_pred             HhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+......+-.+...+ +++.|.+.|+.. ..+.+|+..-|...|...+.+|++...|+++..+.+++.+...
T Consensus       328 ~G~GnGsvfk~Ip~if-~~~~G~v~G~vg-a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         328 AGLGNGSVFKMIPVIF-PKETGAVTGIVG-AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             hccCcchheeechHHH-HhhhhHHHHHHH-HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777766 457888999985 4444588888999999999999888888888877766665543

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=1.3e-29  Score=230.74  Aligned_cols=317  Identities=15%  Similarity=0.088  Sum_probs=218.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhh---cc-----cchhHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.++++++|+++||+||||+++.+.+...++.+..   +.     .++++.+++.|+++|++.+...+...+++.|++
T Consensus        62 ~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  141 (392)
T PRK12382         62 LATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV  141 (392)
T ss_pred             HHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4677889999999999999999999988877665432   22     357899999999999999998888889999999


Q ss_pred             CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccc
Q 014646           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      |+++|++++++.+.+...|..++|++++.+.+.+|||+.+.+..+..++..    ...++.++.  ++++++ .      
T Consensus       142 ~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~-~------  208 (392)
T PRK12382        142 GPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW----AFNGTVRKV--PAHAGE-R------  208 (392)
T ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH----HHHHhccCC--CCCccc-C------
Confidence            999999999999999999999999999999998999988776654332221    111211100  000000 0      


Q ss_pred             ccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014646          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                                                        .+.   .+..+.+.+ +.     +...+..........+.|.|+++
T Consensus       209 ----------------------------------~~~---~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~  245 (392)
T PRK12382        209 ----------------------------------PSL---WSVVGLIWK-PG-----LGLALQGVGFAVIGTFVSLYFAS  245 (392)
T ss_pred             ----------------------------------chH---HHHHHHHHH-hH-----HHHHHHHHHHhHHHHHHHHHHHh
Confidence                                              000   001111111 11     11222334444556677777766


Q ss_pred             hhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhc
Q 014646          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      . +.++.. .......++.+++.+..+++.||+++|     +.+.....+..+........++.+...+...+.+++.+.
T Consensus       246 ~-~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  318 (392)
T PRK12382        246 K-GWAMAG-FTLTAFGGAFVLMRVLFGWMPDRFGGV-----KVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSL  318 (392)
T ss_pred             c-CCchhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----eehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3 344322 223445566788899999999999987     555544444444444444445555555555666666666


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+.......+..|+++|+++.|+.+...+. |..++|.+.|++.|+.| |+..+.+.+.+.+++....+
T Consensus       319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        319 IFPALGVEVVKRVPSQVRGTALGGYAAFQDI-AYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            6666777788889999999999999776666 88999999999999876 87888887776666555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=2.9e-29  Score=227.53  Aligned_cols=302  Identities=16%  Similarity=0.180  Sum_probs=218.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        37 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (377)
T PRK11102         37 LGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRM  116 (377)
T ss_pred             HHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++..+..||.++..   ++++ .              
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~--------------  178 (377)
T PRK11102        117 MSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKE---RRQP-F--------------  178 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---ccCC-C--------------
Confidence            999999999999999999999999889999999998887777666666656532110   0000 0              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                 +.++..+++++.+++|.++...+..++.......+..+.|.++.+..+.++..
T Consensus       179 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        179 ---------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             ---------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence                                       00001134556778888777666666666666677777888888877877655


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHH---HHHHHh-hchhHHHHHHHHHHHHHHhcccc
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS---CLTAFC-LSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      . .......++.+++.++.+++.||+++|     +.+.....+....   ...... ..+.+...+...+.....+....
T Consensus       232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T PRK11102        232 FGYYFALNIVFLFVMTIINSRFVRRVGAL-----NMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISS  306 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            4 344666788889999999999999988     5554444332221   111111 11223333333333333333344


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHH
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      .......+.. ++.++++.++.+.....+|..+++.+.
T Consensus       307 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        307 NAMAVILDEF-PHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556655 488999999987666555666666443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=4.4e-29  Score=226.06  Aligned_cols=313  Identities=17%  Similarity=0.185  Sum_probs=215.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+.....+.+..++++|+++
T Consensus        52 l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (381)
T PRK03633         52 TGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRL  131 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999998888888888889999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ++.+..+.++|..+|+.+++.+.+...|...+. .+........+.+...++.  .   +++++                
T Consensus       132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~---~~~~~----------------  189 (381)
T PRK03633        132 LAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAILPLLFTRILNQ--Q---AENHD----------------  189 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHHHHHHHhcccCC--C---CCCCC----------------
Confidence            999999999999999999999877543333332 2222111111111111110  0   00000                


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      .++.++.+++|.++......+...........++|.|.++. +.++..
T Consensus       190 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~  236 (381)
T PRK03633        190 --------------------------------STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDAS  236 (381)
T ss_pred             --------------------------------CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHH
Confidence                                            01133455666666544434444445556667889988774 555433


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      . .+.....++.+++.+..+++.||+++|     +.+........+..+...  ... .......+.+.+.....+....
T Consensus       237 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-----~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~l~g~~~~~~~p~~~~  308 (381)
T PRK03633        237 IGFWMALLVSAGILGQWPIGRLADRFGRL-----LVLRVQVFVVILGSIAML--SQA-AMAPALFILGAAGFTLYPVAMA  308 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHcCcH-----HHHHHHHHHHHHHHHHHh--hhH-HHHHHHHHHHHHHHhHHHHHHH
Confidence            3 344566678889999999999999988     655544444444333322  111 1222333344444455677777


Q ss_pred             hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          321 VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      ...+..|+++++.+.+..+...+. |..++|.+.|++.|+.+ +...|.+.+.+.++..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~l-G~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        309 WACEKVEHHELVAMNQALLLSYTV-GSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence            788888888878788887655555 89999999999999876 6566776665554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=7.4e-29  Score=227.11  Aligned_cols=318  Identities=15%  Similarity=0.163  Sum_probs=227.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +|+.+++++.|++.||+|||+++..+.++++++++++   .++++++.++++|+++|+|.+...+....++.|+.|+++|
T Consensus        72 ~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~  151 (438)
T PRK10133         72 FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG  151 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhH
Confidence            5788999999999999999999999999999999875   5789999999999999999999999999999998777777


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhc-c-------------------------cchhHHHHHhHHHHHHHHHHH-Hhcc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGS-H-------------------------LNWRYAFWGEAILMLPFAVLA-FVIK  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~-~-------------------------~gwr~~f~~~~~~~~~~~~~~-~~~~  131 (421)
                      .+.+++.+....+|..+++.+++.+.. .                         .+||++|+....+..+..++. ....
T Consensus       152 ~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~  231 (438)
T PRK10133        152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            778999999999999999999876430 0                         256666764443322222222 2222


Q ss_pred             cccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHH
Q 014646          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  211 (421)
                      ||.++     ++++..                                         +..+..++.++++++|.++...+
T Consensus       232 p~~~~-----~~~~~~-----------------------------------------~~~~~~~~~~~ll~~~~~~~~~l  265 (438)
T PRK10133        232 PALQS-----DNHSDA-----------------------------------------KQGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_pred             CCCCc-----cccccc-----------------------------------------cccchhhhHHHHHhCchHHHHHH
Confidence            33110     000000                                         00001123557788888887777


Q ss_pred             HHHHHHHHHHHHHHHhhhHH-HHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          212 GYIAYNFVIGAYSYWGPKAG-YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..++......+...|.+.|+ ++..+.++... .......++.++++++++++.||+++|     +.+.....+....++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~  340 (438)
T PRK10133        266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence            66777777777777888885 56678887655 344667788899999999999999998     666555555544444


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhh
Q 014646          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  369 (421)
                      .....++. ..+..+.+.+++.+..+|..+....+..|+ +.+++.++.. ... .|+.++|.+.|.+.|..|+.+..++
T Consensus       341 ~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~-~g~~~~~~i~G~l~~~~g~~~~~~~  416 (438)
T PRK10133        341 ISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_pred             HHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHh-ccchHHHHHHHHHHHhccchHHHHH
Confidence            43333333 234556678888899999999999888754 5678888874 333 4778889999999997664445555


Q ss_pred             HHHHH
Q 014646          370 ALTSI  374 (421)
Q Consensus       370 ~~~~~  374 (421)
                      +...+
T Consensus       417 v~~~~  421 (438)
T PRK10133        417 IPALC  421 (438)
T ss_pred             HHHHH
Confidence            44333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=1.1e-28  Score=228.99  Aligned_cols=325  Identities=14%  Similarity=0.113  Sum_probs=229.3

Q ss_pred             chhhHHHhhhhhc-----CchHH-HHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            6 VASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 ~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      ++.+++|+++||+     ||||. ++.+.+..+++..++++.   ++++.+.+.+++.|++.+...+...+++.|++|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5788999999999     99985 667777777777777665   47888999999999999999999999999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhc-ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +|+++.++...+..+|.++++.++..+.+ ..|||..|++.+++.++..+..++ .||+++..   ++++..        
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~---~~~~~~--------  207 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTI---PVPKTL--------  207 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCcccc---ccccch--------
Confidence            99999999999999999999999999988 579999999999877666554443 45532110   000000        


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                    +                    +...++++++++++..+...+..++..........+.+.|+.+..
T Consensus       208 --------------~--------------------~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~  253 (491)
T PRK11010        208 --------------E--------------------QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGV  253 (491)
T ss_pred             --------------h--------------------hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                          0                    000123556666777666665555665666666677888887777


Q ss_pred             ccchhhHHHH--hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHH---HHHHhh-chhHHHHHHHHHHHH
Q 014646          236 HMSNADMMFG--GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC---LTAFCL-SSLYGFLALFTVGEL  309 (421)
Q Consensus       236 ~~~~~~~~~~--~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~  309 (421)
                      |.+..+....  ....++.+++.+++|+++||+++|     +.+.....+..+..   ...... ++.+......++..+
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~  328 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----RALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENL  328 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            8876555433  344578899999999999999987     44443333222221   111222 233333333344333


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +.+...+.......+..+++.+++..++.+...+. |..+++.+.|++.|..| |...|.+...+.+.+.+...
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~l-g~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAV-GRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            44444455677788888888999999999777665 77777889999999876 77777777777666655554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=7.5e-29  Score=222.84  Aligned_cols=302  Identities=21%  Similarity=0.309  Sum_probs=253.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|+++||+|||+.+..+.++..++.+...++++++.+++.|++.|++.+...+...+++.|++|+|+|++.
T Consensus        45 ~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (352)
T cd06174          45 LGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA  124 (352)
T ss_pred             HHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+....+|..++|.+++.+.+..+||+.+++.+++.++..+...+. |                             
T Consensus       125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------  174 (352)
T cd06174         125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L-----------------------------  174 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H-----------------------------
Confidence            9999999999999999999999998899999999988776665554433 1                             


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                                |.++...+..++..........+.|.+.++..+.+...
T Consensus       175 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (352)
T cd06174         175 ------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE  212 (352)
T ss_pred             ------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH
Confidence                                                      33455566667777778888889999998876666544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhh-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchh
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFK-LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      . .......++..++.++.+++.||+++|     + .+..+..+..+........++.+...+...+.+++.+...+...
T Consensus       213 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         213 AGLLLSLFGLGGILGALLGGLLSDRLGRR-----RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHH
Confidence            4 445677788999999999999999998     6 66666666666666666666666677777788888888889999


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+..+..|+++|++.+|+.+...+. +..++|.+.+.+.|..+ +...+.+.+...+++.+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSL-GGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999766666 88999999999998655 7677777777666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=2e-28  Score=222.52  Aligned_cols=321  Identities=9%  Similarity=0.067  Sum_probs=209.2

Q ss_pred             cccchhhHHHhhhhhcCchHHH-HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc--h
Q 014646            3 GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--T   79 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~   79 (421)
                      ++.++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...|....++.|+.++++|  +
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV  142 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence            34455555555 9999999875 566677778888888999999887766555555556788888888888876655  3


Q ss_pred             hHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ...++.+.+.++|.++||++++.+.+++|||..|++.++..++..+..++..||.++.++  ++++..            
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------  208 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELP--LATGTL------------  208 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCc--cccccc------------
Confidence            455888999999999999999999998999999999998887777776666676432110  000000            


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                         +..++  +++..+...............+..+.|.|+++..+.++
T Consensus       209 -----------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~  251 (393)
T PRK15011        209 -----------------------------------EAPRR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPE  251 (393)
T ss_pred             -----------------------------------ccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence                                               00000  01111222222233334445566789999988888876


Q ss_pred             hhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... .+.....+..+++.++.|+++||+++|     +.+.................++.+..+....+.+++.+...+..
T Consensus       252 ~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        252 KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-----FLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 333444566778899999999999998     54444333333333332333444444444444444444444444


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+..+..| +.+++++++++...+. |..++|.+.|.+.|..| +...+.......+++....+
T Consensus       327 ~~~~~~~~p-~~~g~~~~~~~~~~~l-g~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        327 MLYFQDLMP-GQAGSATTLYTNTSRV-GWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHhCC-CCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Confidence            555667665 5699999998777665 88999999999999876 76677666655555444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.7e-29  Score=229.82  Aligned_cols=377  Identities=14%  Similarity=0.099  Sum_probs=274.0

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHH-HHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+..|+.+.+.||+|.|.+.+.|.++.+++.++.++++++|++++ .-++.|+|.|..+.....++..||++| |+.+.
T Consensus        94 ~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~  172 (509)
T KOG2504|consen   94 YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALAT  172 (509)
T ss_pred             HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHH
Confidence            3456889999999999999999999999999999999999998877 678899999999999999999888766 99999


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchh-hhcccccccccCC
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV-VASVSEGSEASNL  161 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  161 (421)
                      |+...+.++|.++-|.+...+.+.+|||+.+++.+.+.+-..+......|...+..++ ++++... ..+......+...
T Consensus       173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  251 (509)
T KOG2504|consen  173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVEL  251 (509)
T ss_pred             hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhcccccccccccccccc
Confidence            9999999999999999999999999999999999999877777777777754433222 1000000 0000000000000


Q ss_pred             Cccc-c-ccch--hhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 014646          162 NDHV-S-EDIS--DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       162 ~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                      .... . ....  ........+.+.+............--.++++++.++...+...+...++.....++|.|..+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~  331 (509)
T KOG2504|consen  252 RISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLS  331 (509)
T ss_pred             ccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            0000 0 0000  0000000000000000000000001124778999999999999999999999999999999964444


Q ss_pred             chhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccc
Q 014646          238 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      +.......++.++..++++++.|++.|+...+..   .....+.+..++..+......+.+.++....+.+++.+.....
T Consensus       332 ~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l  408 (509)
T KOG2504|consen  332 SNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL  408 (509)
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566688889999999999999999874321   4445566666666666666677777777778888888877776


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      ...++.+.++.++-+.+.|+...+... +..+||++.|++.|..++|...|++++...+++...++...
T Consensus       409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi-~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  409 TPVILVDLVGLEKLSNAYGLLLLFQGI-GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHcChhhcchHHHHHHHHhHH-HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            677899999999999999999655555 88999999999999999999999999999888887776554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=3.1e-28  Score=221.03  Aligned_cols=314  Identities=15%  Similarity=0.150  Sum_probs=232.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++.+++++.|++.||+|||+++.++.++++++.+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|
T Consensus        49 ~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~  128 (410)
T TIGR00885        49 GGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTA  128 (410)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHH
Confidence            578899999999999999999999999999999988644   46899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcc--------------------------cchhHHHHHhHHHHHHHHHHHHhc-c
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSH--------------------------LNWRYAFWGEAILMLPFAVLAFVI-K  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------------------------~gwr~~f~~~~~~~~~~~~~~~~~-~  131 (421)
                      ++.+++.+...++|..++|.+++.+...                          .+||++|++.+++.++..++..+. .
T Consensus       129 ~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~  208 (410)
T TIGR00885       129 TRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKM  208 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998877422                          369999999988776655444322 1


Q ss_pred             cccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHH
Q 014646          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  211 (421)
                      |+.++    +++++ .                                            +..++.++++++|.++...+
T Consensus       209 p~~~~----~~~~~-~--------------------------------------------~~~~~~~~~~~~~~~~~~~l  239 (410)
T TIGR00885       209 PALNH----SDAKQ-I--------------------------------------------SFSASLSRLARIRHYREGVI  239 (410)
T ss_pred             CCCCc----ccccc-c--------------------------------------------cchhhHHHHHhChhHHHHHH
Confidence            22100    00000 0                                            00012446678888888777


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhh-ccchh-hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          212 GYIAYNFVIGAYSYWGPKAGYNIY-HMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..+++.........+++.|.++.. +.+.. ...+......+..+|+++++++.||+++|     +.+......+.+.++
T Consensus       240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~l  314 (410)
T TIGR00885       240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCL  314 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHH
Confidence            777777777777888999987643 22221 12334445577789999999999999888     777666666666666


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh-----hch
Q 014646          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-----NNW  364 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-----~~~  364 (421)
                      +....++... ...+.+.+++.+..+|..++...+..+++.+..+.++. +.  .+|+.+.|++.|++.|..     |++
T Consensus       315 l~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~-~~--~~Gga~~p~l~G~~~d~~~~~~~~~~  390 (410)
T TIGR00885       315 GSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLV-MA--IIGGGIVPPLQGFIIDMKEIAAAPAV  390 (410)
T ss_pred             HHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HH--HhccchHHHHHHHHHHHhcccccCcc
Confidence            6655554333 45566677778888899999999998776554455554 32  259999999999999964     345


Q ss_pred             hhhhhHHHH
Q 014646          365 RKTTLALTS  373 (421)
Q Consensus       365 ~~~~~~~~~  373 (421)
                      +..|++...
T Consensus       391 ~~~~~~~~~  399 (410)
T TIGR00885       391 NTSFILPLL  399 (410)
T ss_pred             chHHHHHHH
Confidence            556665433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=2.8e-28  Score=222.66  Aligned_cols=300  Identities=19%  Similarity=0.142  Sum_probs=216.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+...+++.|++|++++++.
T Consensus        52 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (401)
T PRK11043         52 AGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRV  131 (401)
T ss_pred             HHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999888888888899999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      .+.......+|..++|.+++.+.+++|||+.|++.+++.++..++.++. ++++++    ++.+..              
T Consensus       132 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~--------------  192 (401)
T PRK11043        132 FATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL-KPSKKA----RKQSQD--------------  192 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CCCCCc----cccchH--------------
Confidence            9999999999999999999999999999999999988877766655544 322110    000000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                      ..++++++++|.++...+...+.......+..+.|.+.++ .+.++..
T Consensus       193 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~  239 (401)
T PRK11043        193 --------------------------------ALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPAD  239 (401)
T ss_pred             --------------------------------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHH
Confidence                                            1235566777777765555555555566677788888766 5666544


Q ss_pred             HHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHH---HHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHhccc
Q 014646          242 MMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA---TFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQ  315 (421)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  315 (421)
                      ... .....++.+++.++.+++.||++++     +.....   ..++.........  .++.+.......+.+++.+...
T Consensus       240 ~g~~~~~~~~~~~~g~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (401)
T PRK11043        240 IGLSYVPQTIAFLVGGYGCRAALQKWGGE-----QLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIY  314 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            433 2444567788888899999999876     332221   1222221111111  2233334444555666666666


Q ss_pred             cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          316 APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      +.......+.. +++++++.|+.+..... ++..++.+.|.+.|.
T Consensus       315 ~~~~~~~~~~~-~~~~g~~~g~~~~~~~~-~~~~~~~~~g~l~~~  357 (401)
T PRK11043        315 PIVVAQALRPF-PQATGKAAALQNTLQLG-LCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHhhhC-cccChHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            66666666655 46799999999876555 666778888888774

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=8e-29  Score=254.26  Aligned_cols=323  Identities=13%  Similarity=-0.028  Sum_probs=230.3

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHH---HHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++++.++++|+++||+|||+++..   ..+...+..+.....++++.++++|+++|++.+...|+..+++.|++|+++|
T Consensus        63 l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~  142 (1140)
T PRK06814         63 LPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDEL  142 (1140)
T ss_pred             HHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcccc
Confidence            4677889999999999999997533   2233333333334458999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      ++++++.+++.++|.++||++++++.+..+|++.|...++..++. ++..+..|+.++... ..+.+.            
T Consensus       143 ~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~------------  208 (1140)
T PRK06814        143 LGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAP-DLKIDR------------  208 (1140)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCC-CCeecc------------
Confidence            999999999999999999999999999999999995544444433 333344444321100 000000            


Q ss_pred             cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Q 014646          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                                   ...++....++.+.+++.++...+..++..+....+..++|.|+++.++.+
T Consensus       209 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~  259 (1140)
T PRK06814        209 -----------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD  259 (1140)
T ss_pred             -----------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence                                         000111235677889999999888888887777888889999999988877


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--------------------hchh
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--------------------LSSL  297 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~  297 (421)
                      +... .+.+...++.+++.++.+++.|+..++     +.+....++..+..+.+..                    ..+.
T Consensus       260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1140)
T PRK06814        260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITL-----LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG  334 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence            6544 444677788899999999999876655     2222222222121111111                    1445


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHH
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  373 (421)
                      +..++..++.+++.+...++..+++++..|++.+|+++|+.+..... +..+++.+.+.+.+...++...+++.+.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~-~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAA-FMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            55556666677777777888899999999999999999999876655 8888998989888654444444444333

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=4.7e-28  Score=217.46  Aligned_cols=305  Identities=14%  Similarity=0.048  Sum_probs=216.3

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+...+....++.|++| ++|+++
T Consensus        46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~  123 (355)
T TIGR00896        46 LCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLM  123 (355)
T ss_pred             HHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHH
Confidence            5678899999999999999999999999988888887 78899999999999999999888888888999986 579999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      +++.+.+.++|..+++.+++.+.+..  +||+.|...+++.++...   ...|+.+++   +++++..            
T Consensus       124 ~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~------------  185 (355)
T TIGR00896       124 TGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL---AWIPQVRRR---VAANQTT------------  185 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHhhhhccc---cCCCCCC------------
Confidence            99999999999999999998887664  399999887765433221   223432211   0000000            


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                         +              ....++++++|.++...+..++....+.....|+|.|+++ .+.+.
T Consensus       186 -------------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~  231 (355)
T TIGR00896       186 -------------------T--------------RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASA  231 (355)
T ss_pred             -------------------C--------------CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH
Confidence                               0              0113345677888776666666667777888899999987 46665


Q ss_pred             hhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... .......++.++++++.+++.||+++|+    ..+.....+..+..+......+..... ...+.+++.+...+..
T Consensus       232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~  306 (355)
T TIGR00896       232 ATAGSLLALMQLAQAASALLIPALARRVKDQR----GIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA  306 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence            443 4456778889999999999999995441    444444444433333333333222222 3445566666666655


Q ss_pred             hhhhhcccC-cchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhh
Q 014646          319 NYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  366 (421)
Q Consensus       319 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  366 (421)
                      .....+..+ ++.++...++.+...+. +..++|.+.|++.|+.|+|..
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       307 LTLIGLRSRQAAQAAALSAMAQSIGYL-LAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCC
Confidence            555555444 46778888988655555 778899999999999887643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=6e-28  Score=222.06  Aligned_cols=329  Identities=17%  Similarity=0.151  Sum_probs=250.6

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-----chhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ...+.++++|.++||++|||+++.+.++.++..+..++.     .+.+.+++.-++.|++.+...|...+++.|..|+++
T Consensus        57 P~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   57 PILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            456788999999999999999999998877665554432     478889999999999999999999999999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      ...++++.+...++..++||.++|.+...+|-.+.|.+.++..++.........|+..+.    +..++           
T Consensus       137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~----~~~~e-----------  201 (524)
T PF05977_consen  137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS----SLPRE-----------  201 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc----ccchh-----------
Confidence            999999999999999999999999999988999999999876665544444332221100    00000           


Q ss_pred             ccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 014646          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                                    ...++..+.++.+.++|.+....+..++.+.....+...+|.+.++..+.
T Consensus       202 ------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~  251 (524)
T PF05977_consen  202 ------------------------------RFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGG  251 (524)
T ss_pred             ------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCC
Confidence                                          11123345667777788777666656666666666667789999988887


Q ss_pred             chhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhcccc
Q 014646          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ++... .+.+..++++++|.++.+++.+|++++     +++..+.+..+...+.+...++.+...+.+++.|++......
T Consensus       252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  252 GASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            76555 344677788888888888888877766     666666666666666666677777777778888888888888


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ...+..++..|++.||++++++++.... +..+|..+.|.+.|..| ....+.+.++..+++.++..
T Consensus       327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g-~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  327 SLNTLVQLSVPDWVRGRVFSIYQMVFFG-GMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHhCCHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999766666 77889999999999887 44566655555444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=5.2e-28  Score=220.40  Aligned_cols=303  Identities=13%  Similarity=0.065  Sum_probs=218.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+..+..++.+.+.++++++.+++.|++.|++.+...+....+..|.+++++++++
T Consensus        54 ~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (394)
T PRK11652         54 LTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHA  133 (394)
T ss_pred             HHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999988888888889999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++...+..+|..++|.+++.+.+..|||+.|++.++..++..++..+..||+++..    +++ .              
T Consensus       134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~--------------  194 (394)
T PRK11652        134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD----ARR-T--------------  194 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc----cch-h--------------
Confidence            999999999999999999999999889999999998877766655555556532110    000 0              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                    +..+++++.+++|.++...+..+........+..+.+.++++..+.++..
T Consensus       195 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  244 (394)
T PRK11652        195 ------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMT  244 (394)
T ss_pred             ------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHH
Confidence                                          00134566778888776665555555555555667788888877777544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHH-HHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHhccccc
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS-AATFLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      . .......++.+++..+.+++.||.+++     .... ...............  ..+.+.......+.+++.+...+.
T Consensus       245 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  319 (394)
T PRK11652        245 VSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPL  319 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3 233444566666777777777777632     2221 222222222222111  123344455556666777777777


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ......+..| ++++++.++.+..... |..+++.+.+.+.+.
T Consensus       320 ~~~~~~~~~~-~~~g~~~~~~~~~~~l-g~~~~~~~~~~~~~~  360 (394)
T PRK11652        320 ATSGAMEPFP-YLAGTAGALLGGLQNI-GSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHhhcc-ccchHHHHHHHHHHHH-HHHHHHHHHHHccCC
Confidence            7887888775 6789999999766665 888888888877654

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=1.9e-28  Score=222.25  Aligned_cols=314  Identities=16%  Similarity=0.088  Sum_probs=222.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++++++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|.+.+...+...++..|.+|+++|+++
T Consensus        54 ~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (395)
T PRK10054         54 TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKI  133 (395)
T ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHH
Confidence            35677899999999999999999999999999999999999999999999999988888888889999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.....++|.+++|.+++.+.+ .+|+..|++.++..++..++..+..|++++.    ++++..              
T Consensus       134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~~~--------------  194 (395)
T PRK10054        134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATETG--------------  194 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccchh--------------
Confidence            999999999999999999999875 6999999998887766655555544543211    000000              


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc--h
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS--N  239 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  239 (421)
                                                +     ..+.++.+++|.++...+..++.......+..+.+.|..+..+.+  .
T Consensus       195 --------------------------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (395)
T PRK10054        195 --------------------------S-----VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAE  243 (395)
T ss_pred             --------------------------h-----hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHH
Confidence                                      0     001245668888877776666666665555566677665433322  2


Q ss_pred             hhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHhccccc
Q 014646          240 ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ... .+.....+.........+++.||.++|     +.+.....+..+....... .++.+.+.+...+.+++.....+.
T Consensus       244 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        244 KVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             HHHHHHHHhhhhheeeehhHHHHHHccCCch-----hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            222 222333344445556778888988877     5555554444444433332 234444455556666666666666


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHH
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  373 (421)
                      ....+.+..|++.++++.+..+ ..+. |..+||.+.|.+.|+.| +...+...+.
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~-G~~~Gp~~~G~l~~~~g-~~~~~~~~~~  371 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWL-GAAINPLVSGVILTTLP-PWSLFVILAL  371 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHH-HHHHHHHHHHHHHHHcC-hhhHHHHHHH
Confidence            6778888889999999988764 4444 88999999999999886 4344444333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=229.36  Aligned_cols=384  Identities=14%  Similarity=0.159  Sum_probs=247.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +|.+++++++|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||..
T Consensus       100 lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l  179 (513)
T KOG0254|consen  100 LGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTL  179 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      .+..+....+|..++..++....+. .+||..+.+..+++++..+. .++.||++++..+.  .+....+.....+....
T Consensus       180 ~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~--g~~~~a~~~l~~l~g~~  256 (513)
T KOG0254|consen  180 VSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEK--GRLEEAKRSLKRLRGLS  256 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHc--CChHHHHHHHHHHhCCC
Confidence            9999999999999997666665443 58999999999999888888 77779988875432  11111111112222211


Q ss_pred             CCccccccchhhh-hhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          161 LNDHVSEDISDQA-SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                       +++...+..+.. .........+.+  ..+.+...   ...+++.+....+..+.+..+.+...+|.+.+++..+..+.
T Consensus       257 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~  330 (513)
T KOG0254|consen  257 -PEDVEVELELLKIKLLVEAEVAEGK--ASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD  330 (513)
T ss_pred             -CcchHHHHHHHHHHHHHhhhccccc--ccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc
Confidence             111111111111 000000000000  00001111   11223334444444455555567777888888777665544


Q ss_pred             hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh------------chhHHHHHHHHHH
Q 014646          240 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------------SSLYGFLALFTVG  307 (421)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~  307 (421)
                      . .....+..+..+++.+++.++.||+|||     +.++.+.....++.++....            ...+..++..++.
T Consensus       331 ~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (513)
T KOG0254|consen  331 T-FLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLF  404 (513)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Confidence            3 3444566777888888889999999998     77666555555444333211            1123334444444


Q ss_pred             HHHHhccccchhh-hhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          308 ELLVFATQAPVNY-VCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      .......+.+..+ +..|.+|.+.|+++.++.....+.....+ ......+.+..+ ....+........+.... ++..
T Consensus       405 v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~-~~~~f~~f~~~~~~~~~~-fv~~  481 (513)
T KOG0254|consen  405 IFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALG-IGGTFGYFGGICLLSLII-FVFF  481 (513)
T ss_pred             HHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcc-ccchHHHHHHHHHHHHHH-HheE
Confidence            4555556666655 56777888999999999977777755555 444445544433 123444444443333331 2233


Q ss_pred             eeec-ccccccccccccc
Q 014646          387 FLKS-IDKFNEDGENQIS  403 (421)
Q Consensus       387 ~~~~-~~~~~~~~~~~~~  403 (421)
                      ..|| |+++.++.++...
T Consensus       482 ~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  482 FVPETKGLTLEEINELFE  499 (513)
T ss_pred             EcccCCCCcHHHHHHHHH
Confidence            5565 7888777666544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=7.3e-28  Score=217.95  Aligned_cols=317  Identities=12%  Similarity=-0.005  Sum_probs=233.2

Q ss_pred             cccchhhHHHhhhhhcCchHHH----HHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            3 GLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +..++++++|+++||+|||...    ..+..+..+  ..+..+++++.+++.|+++|.+.+...|...++..++  +++|
T Consensus        51 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~  126 (382)
T TIGR00902        51 ARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQF  126 (382)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHc
Confidence            4567889999999999985433    333322222  2445788999999999999999988888888887665  4678


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +++++......++|.+++|++++.+.+++|||..|++.++..+ ..++.+...|+.++..  +++++..           
T Consensus       127 ~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~-----------  192 (382)
T TIGR00902       127 GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFLIKPTIPPKD--AIPEDES-----------  192 (382)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHcCCCCCCCc--ccccccc-----------
Confidence            9999999999999999999999999999999999988765532 2222333222211100  0000000           


Q ss_pred             cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Q 014646          159 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS  238 (421)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (421)
                                                       +..++.++++|+|+++...+..++.......+..+.|.|+++ .+.+
T Consensus       193 ---------------------------------~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s  238 (382)
T TIGR00902       193 ---------------------------------QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGIS  238 (382)
T ss_pred             ---------------------------------ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence                                             001235677899999998888888888888888899999987 6666


Q ss_pred             hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccc
Q 014646          239 NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      +... ....+..+..+++..+.+++.||+++|     +.+..+.+...+........++.+..+....+.++..+...+.
T Consensus       239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       239 ASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5444 333556677788888889999999988     7777777777777666666777777777888888888888888


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      ...++.+. |+++++++.++++.....+|..++|.+.|++.|+.| + ..+...+.+.+.+.
T Consensus       314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            88888887 888999999998765555688999999999999986 4 45666555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=5.1e-28  Score=249.39  Aligned_cols=312  Identities=13%  Similarity=0.018  Sum_probs=224.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++++++++++|+++||+|||++++++.++..++.++..   .+++++.+++.|+++|++.+...++..+++.|++|+++|
T Consensus        58 l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  137 (1146)
T PRK08633         58 LPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENL  137 (1146)
T ss_pred             HHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccc
Confidence            56788999999999999999999998877666555443   457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcc---------cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhh
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  149 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  149 (421)
                      ++++++.+.+.++|.++|+.+++++.+.         .+|++.+.+..+...+..++..+..|+.++.....++.+..  
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  215 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKY--  215 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccccc--
Confidence            9999999999999999999999998865         23555555544443334444444445543221100000000  


Q ss_pred             hcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014646          150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                                                            ...++....++.+++++.++...+..++..........++|.
T Consensus       216 --------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (1146)
T PRK08633        216 --------------------------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPA  257 (1146)
T ss_pred             --------------------------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                                                  000112234667788888888777777766667777788999


Q ss_pred             HHHHhhccchh-hH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 014646          230 AGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG  307 (421)
Q Consensus       230 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (421)
                      |+.+..+.+.. .. .+.....++.+++.++.+++.||++++     +.+..+.++.++..+......+.+..++..++.
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----GLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99988888755 33 444666778888999999999998876     444444444444444444445555566666677


Q ss_pred             HHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          308 ELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +++.+...++...++.+..|++.|++++|+.+...+. |.++++.+.+.+..
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~l-g~~~~~~~~~~l~~  383 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNV-GMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            7777777777888889999999999999999766665 76666655554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=3.1e-28  Score=230.90  Aligned_cols=336  Identities=21%  Similarity=0.314  Sum_probs=240.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc---------------------------------------
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---------------------------------------   42 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------------------------------------   42 (421)
                      +|++++.++.|+++||+|||+++.++.++++++++++++.+                                       
T Consensus        79 i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  158 (633)
T TIGR00805        79 IGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC  158 (633)
T ss_pred             HHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence            57889999999999999999999999999999999988763                                       


Q ss_pred             ------------hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhccc---
Q 014646           43 ------------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---  107 (421)
Q Consensus        43 ------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---  107 (421)
                                  .+..++++|+++|+|.+..++...+++.|++|+++|++++++++.+..+|.++|+++++++.+.+   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~  238 (633)
T TIGR00805       159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDT  238 (633)
T ss_pred             ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence                        25567889999999999999999999999999999999999999999999999999999887543   


Q ss_pred             -------------------chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCcccccc
Q 014646          108 -------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  168 (421)
Q Consensus       108 -------------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (421)
                                         +|+..|++.+++.++.++..+ ..|+..+.....++.+.... +   ..+   .       
T Consensus       239 ~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~~~~~~~~~~~-~---~~~---~-------  303 (633)
T TIGR00805       239 GSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEGKRVNVDVHET-E---KLE---K-------  303 (633)
T ss_pred             ccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcccccchhhhhh-h---ccc---c-------
Confidence                               278889999888877766544 44554322110000000000 0   000   0       


Q ss_pred             chhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHH-hh
Q 014646          169 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GV  247 (421)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  247 (421)
                        .+.+..       .......++..+.++.+++||.++...+..++.....+++.+|+|.|+++.++.++....+. ..
T Consensus       304 --~~~~~~-------~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~  374 (633)
T TIGR00805       304 --SEDKSR-------KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGV  374 (633)
T ss_pred             --cccccc-------hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhh
Confidence              000000       00001123344567889999999999999999999999999999999999999987655333 33


Q ss_pred             HhH-HHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH---------------------------Hh------
Q 014646          248 TIV-CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA---------------------------FC------  293 (421)
Q Consensus       248 ~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~------  293 (421)
                      ..+ +.+++.+++|+++||++.+.+...+......++..+.....                           ..      
T Consensus       375 ~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~  454 (633)
T TIGR00805       375 VNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCS  454 (633)
T ss_pred             hhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCC
Confidence            333 56789999999999998654322222222222221111100                           00      


Q ss_pred             --h--------------------------------------------------c-------h-hHHHHHHHHHHHHHHhc
Q 014646          294 --L--------------------------------------------------S-------S-LYGFLALFTVGELLVFA  313 (421)
Q Consensus       294 --~--------------------------------------------------~-------~-~~~~~~~~~~~~~~~~~  313 (421)
                        .                                                  .       + ...+++++++..+..+.
T Consensus       455 C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~  534 (633)
T TIGR00805       455 CDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFI  534 (633)
T ss_pred             CCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHh
Confidence              0                                                  0       0 12234444455556667


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      ...+...++.+.+|+++|+.+.|+.....+.+|.+-+|+++|++.|..
T Consensus       535 ~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s  582 (633)
T TIGR00805       535 TAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS  582 (633)
T ss_pred             ccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence            777888899999999999999999999999999999999999999864

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=9.2e-28  Score=216.89  Aligned_cols=300  Identities=16%  Similarity=0.129  Sum_probs=206.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchh
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      +++++++++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++
T Consensus        48 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~  126 (366)
T TIGR00886        48 LAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGT  126 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhH
Confidence            56789999999999999999999999999999999999999 999999999999998664 4567889999999999999


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhc----------ccchhHHH-HHhHHHHHHHHHHHHhcccccccccCCcccccchhh
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV  149 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~----------~~gwr~~f-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  149 (421)
                      ++++.....++|..+++.+++.+..          +.+||+.| +..+++..+..++.+...||.++..+  ++++..  
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  202 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKP--ATGKLS--  202 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccc--cchhcc--
Confidence            9999998888888888777766553          34899999 44465555555555555455432210  000000  


Q ss_pred             hcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014646          150 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                       .       ...    ...  .       ++           +..+..++.+++|.++...+..++..........+.|.
T Consensus       203 -~-------~~~----~~~--~-------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (366)
T TIGR00886       203 -F-------KGA----RWS--V-------GT-----------GALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAM  250 (366)
T ss_pred             -c-------ccc----ccc--c-------cc-----------hhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             0       000    000  0       00           00112445667888887777766666667778889999


Q ss_pred             HHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HHHH-hhc--hhHHHHHHH
Q 014646          230 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC-LTAF-CLS--SLYGFLALF  304 (421)
Q Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~~  304 (421)
                      |+++.++.++... .+..+..+.++++.++.+++.||+++|     +............. ++.. ...  +.+......
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF  325 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence            9999888776554 345666778889999999999999987     33333322222222 2222 222  344444444


Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHH
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                      .+...+.+...+.......+..| +++++++|+.+...+.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       326 VALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccC
Confidence            55555666666666777777664 7999999998655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.96  E-value=1.3e-33  Score=261.91  Aligned_cols=372  Identities=19%  Similarity=0.221  Sum_probs=238.2

Q ss_pred             CccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         1 ~lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++|..+|++++|+++||+|||+.+.++.++..+++++.++++   +++.+.++|+++|++.|...+....++.|..|+++
T Consensus        56 ~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~  135 (451)
T PF00083_consen   56 FIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH  135 (451)
T ss_pred             Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            468899999999999999999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhccc---chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      |++..++.+.+..+|.+++..++..+....   +||..+.+..+++++..+.. ++.||+|++...+++.+  +.++..+
T Consensus       136 R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~--~A~~~l~  212 (451)
T PF00083_consen  136 RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDE--EAEKVLR  212 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceeccccccc--ccccccc
Confidence            999999999999999999988876554433   49999999998887655544 55699998865443332  2222222


Q ss_pred             cccccCCCcc-ccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhh-----HHHHHHHHHHHHHHHHHHHHHhh
Q 014646          155 GSEASNLNDH-VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV-----YVVNVLGYIAYNFVIGAYSYWGP  228 (421)
Q Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  228 (421)
                      +.+..+..++ .++..++.++.++.+               ..++++++++.     +....+..+....+.+....+.|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  277 (451)
T PF00083_consen  213 KLRGKEIEDEEIEEIKAEKKESQESK---------------ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP  277 (451)
T ss_pred             cccccccccccccccccccccccccc---------------eeeeecccccccccccccccccccccccccccccccccc
Confidence            2222211111 111111111110000               12333444322     22222212222223344455666


Q ss_pred             hHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-----hhch----hHH
Q 014646          229 KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLSS----LYG  299 (421)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~  299 (421)
                      .+.++. +.+.. ........+...++.+++.++.||+|||     +.+..+.....++.+.+.     ..++    ...
T Consensus       278 ~i~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  278 SIFENA-GISNS-FLATLILGLVNFLGTLLAIFLIDRFGRR-----KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccc-ccccc-cccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccc
Confidence            665553 33332 2233444566677788888999999998     666555554444433331     1112    122


Q ss_pred             HHHHHHHHHHHHhccc-cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHH
Q 014646          300 FLALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  378 (421)
                      .+....+...+.+... +....+..|.+|++.|+++.++.+...+. ++++++.+.+.+.+..+.+ ..+.+.+.+.++.
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i-~~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~i~  428 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI-GGFIIPFLFPYLFNNLGGW-GVFLIFAGVCLIA  428 (451)
T ss_pred             cceeeeeccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-ccchhhHHHHHHH
Confidence            2223333333333333 34456779999999999999999766665 7788888888888876523 3444444443333


Q ss_pred             HHHhhhheeeec-ccccccccccc
Q 014646          379 AGIWFVGIFLKS-IDKFNEDGENQ  401 (421)
Q Consensus       379 ~~~~~~~~~~~~-~~~~~~~~~~~  401 (421)
                      .+  +...+.|| |+++.+|.++.
T Consensus       429 ~i--~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  429 II--FVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             Hh--heeEEEeeCCCCCHHHHHhh
Confidence            32  22335676 77787776653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=5.4e-27  Score=221.03  Aligned_cols=336  Identities=15%  Similarity=0.162  Sum_probs=221.4

Q ss_pred             CccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchh
Q 014646            1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         1 ~lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      ++|.++|++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.++.......++.|++++++|+.
T Consensus       128 ~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~  207 (521)
T KOG0255|consen  128 FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGL  207 (521)
T ss_pred             HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +.++ ......+..++++.++++..  +||+.+++..+++++..++ +++.||++++...+.+.+..  .+..++..+.+
T Consensus       208 ~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a--~~~l~~~a~~n  281 (521)
T KOG0255|consen  208 ALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEA--IKILKKIAKLN  281 (521)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHH--HHHHHHHHhhc
Confidence            9999 77777888888888888877  7999999999988777666 55557988875443333211  11111111111


Q ss_pred             -CCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          161 -LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                       ...+..+..+..........        ...+....+.++++.|++....+...+..+. ....++.-.+..+..+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~y~gl~~~~~~lg~~~  352 (521)
T KOG0255|consen  282 GRKLSVKELLRLELLLRPLKL--------LFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSLVYYGLSLNVSGLGGNI  352 (521)
T ss_pred             CCCCCcHHHHHHHHHhhHhhh--------hccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhHHHHhhhhhhhhcCchH
Confidence             00000111111100000000        0000012355666666444333322222211 1222222222222233331


Q ss_pred             hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch-h--HHHHHHHHHHHHHHhcccc
Q 014646          240 ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS-L--YGFLALFTVGELLVFATQA  316 (421)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~  316 (421)
                        .....+.......+....+...|+.|||     ........+..++++....... .  +...+...+..++.+..+.
T Consensus       353 --~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
T KOG0255|consen  353 --YLNFTLSGLVELPAYFRNGLLLPEFGRR-----PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFN  425 (521)
T ss_pred             --HHHHHHHHHHHhhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence              1222333345666677778999999988     6666666666666555544432 2  2455566666677777777


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      ..+.+..|.+|+..|..+.+..+..... +.+++|.+.-....
T Consensus       426 ~~~~~~~el~pt~~r~~~~~~~~~~~~~-~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  426 LIFLYSAELIPTVVRNTAVGAISAAARL-GSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence            7899999999999999999999655555 88888866543333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=7e-27  Score=194.58  Aligned_cols=363  Identities=14%  Similarity=0.112  Sum_probs=239.7

Q ss_pred             CccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchh
Q 014646            1 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         1 ~lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      +.|+.+++..+|.++|++|||+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|..
T Consensus       123 ~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~  201 (528)
T KOG0253|consen  123 FLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWL  201 (528)
T ss_pred             HhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCc
Confidence            368899999999999999999999999999999999999999999999999999999998 8889999999999998988


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccc-ccchhhhccccccccc
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES-GKAQVVASVSEGSEAS  159 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~  159 (421)
                      .+-.. ..+.+|.++...++-.+..++||||.....+.+..+.+.. .+..||+++..-.+.+ .+....-++..+.+..
T Consensus       202 ~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~  279 (528)
T KOG0253|consen  202 LTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDDYKALETLHKIARMNGK  279 (528)
T ss_pred             chhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCChHHHHHHHHHHHHhcCC
Confidence            77777 9999999999999999999999999999988665555544 4445888876432221 1111111111111111


Q ss_pred             CCCc-cccccch-----hhhhhhhhcccccchhhhhhhhhhhhhHhhhc----hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014646          160 NLND-HVSEDIS-----DQASERSIKSIGESRFLNQLSQFSQDTKVLLQ----EKVYVVNVLGYIAYNFVIGAYSYWGPK  229 (421)
Q Consensus       160 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (421)
                      +-.- .......     ++.+-++.+.+..+       +...+..+++.    +..+.. ...++...+.+++.......
T Consensus       280 qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k-------e~rg~~~nLlsp~lrkttlll-w~iwfgnafsyyg~VLltte  351 (528)
T KOG0253|consen  280 QLPLGVLESSAIDRQEQEESDLDDSKSSAAK-------EVRGGTTNLLSPKLRKTTLLL-WRIWFGNAFSYYGSVLLTTE  351 (528)
T ss_pred             CCCcceeeeehhhhhhhhhhchhhhhhcccc-------ccccchHhhcChHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence            1110 0000000     00000111111111       11112223322    222211 11233333444444433333


Q ss_pred             HHHHhh-----------------c---cchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          230 AGYNIY-----------------H---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       230 ~~~~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..+...                 +   .+.....-..+..+..+.|.++.++++||+|||     +.+....++++++.+
T Consensus       352 lfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK-----kTMal~l~~f~iflf  426 (528)
T KOG0253|consen  352 LFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK-----KTMALSLILFGIFLF  426 (528)
T ss_pred             HHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch-----hHHHHHHHHHHHHHH
Confidence            222211                 0   111112223456678899999999999999999     888888888888887


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhh
Q 014646          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  369 (421)
                      +..............+..-++..+.+...+.+..|.+|+..|+++.|....+.++ |+++.|++. ...+..- + .+..
T Consensus       427 ll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRI-ggI~~p~iA-~~~e~s~-s-l~i~  502 (528)
T KOG0253|consen  427 LLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARI-GGIFSPVIA-MRAELST-S-LPIF  502 (528)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhh-hhhhhhHHH-HHhccce-e-ehHH
Confidence            7776666656666777778888888999999999999999999999999655555 999999776 4444322 3 4444


Q ss_pred             HHHHHHHHHHHHhh
Q 014646          370 ALTSIFFLAAGIWF  383 (421)
Q Consensus       370 ~~~~~~~~~~~~~~  383 (421)
                      +.+.+++++.+...
T Consensus       503 vy~~~~ilagIavc  516 (528)
T KOG0253|consen  503 VYGALFILAGIAVC  516 (528)
T ss_pred             HHHHHHHHHHHHhe
Confidence            55555555554444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.96  E-value=1.7e-26  Score=209.15  Aligned_cols=314  Identities=13%  Similarity=0.040  Sum_probs=218.2

Q ss_pred             ccccchhhHHHhhhhhcCch----HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++..++++++|+++||+|||    +.+.++..+.  .......+++++.+++.|++.|++.+...|...+++.++  +++
T Consensus        50 l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~  125 (382)
T PRK11128         50 VARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ  125 (382)
T ss_pred             HHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh
Confidence            35677899999999999994    3333332222  223344568899999999999999998888888887776  345


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      |+++++......++|.++||++++++.+++|||..|++.++..++..+ ..+..||..+.    ++++..          
T Consensus       126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~----------  190 (382)
T PRK11128        126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTIMPQ----GESRQQ----------  190 (382)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCCCCc----cccccc----------
Confidence            888889999999999999999999999999999999988765444333 33333432110    000000          


Q ss_pred             ccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 014646          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                          .            ++..+++++++|+|.++...+..++..........+.|.|.++ .+.
T Consensus       191 --------------------~------------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~  237 (382)
T PRK11128        191 --------------------E------------SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGY  237 (382)
T ss_pred             --------------------c------------ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCC
Confidence                                0            0001246678899999988777777777777777888888866 566


Q ss_pred             chhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhcccc
Q 014646          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                      ++... .+..+..+..++..++.+++.||++++     +.+..+.....+..+.....++.+..++..++.+++.+...+
T Consensus       238 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        238 SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            64433 333455667778888899999999887     666666665555555555556666666667777777776666


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHH
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  375 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  375 (421)
                      ....+..+. +++++++..+..+...+..|..++|.+.|.+.|..|.  ..++..+.+.
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~--~~~~~~~~~~  368 (382)
T PRK11128        313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA--GVFWVMALVA  368 (382)
T ss_pred             HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence            666666665 6667788899886555555778899999999998873  3444444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=4.6e-26  Score=207.75  Aligned_cols=318  Identities=15%  Similarity=0.107  Sum_probs=207.6

Q ss_pred             chhhHHHhhhhhc-----CchH-HHHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            6 VASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 ~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +..+++|+++||+     |||| ++.++.++.+++....++.   ++++.+++..++.++..+...+...+++.|++|++
T Consensus        47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~  126 (402)
T PRK11902         47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE  126 (402)
T ss_pred             HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5789999999999     8876 7888888888777777776   45788888888889889989999999999999999


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +|+++.++...+..+|.++++.++..+.+. .|||..|++.+++.++..+.. +..||+++..   ++++..        
T Consensus       127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~---~~~~~~--------  194 (402)
T PRK11902        127 ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPA---RPPRSL--------  194 (402)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccc---cccchh--------
Confidence            999999999999999999999999998885 599999999988776554433 3345422110   000000        


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                                        .++..+++++++++|.++...+..++..........+.+.++.+..
T Consensus       195 ----------------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~  240 (402)
T PRK11902        195 ----------------------------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGA  240 (402)
T ss_pred             ----------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence                                              0001234667889998887776666655544333344555666667


Q ss_pred             ccchhhHHHH-hh-HhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH---HHHhh-chhHHHHHHHHH---
Q 014646          236 HMSNADMMFG-GV-TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCL-SSLYGFLALFTV---  306 (421)
Q Consensus       236 ~~~~~~~~~~-~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~---  306 (421)
                      +.++....+. .. ...+.+++.++++++.||+++|     +.+.....+..+..+   ..... ++.+.......+   
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-----~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-----RSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENL  315 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            7776554333 22 2345788999999999999987     544433333332221   11222 333433333322   


Q ss_pred             -HHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          307 -GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       307 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                       .++..+........++.+..|.+++    +..+...+. +...++.+.|.+.|..| +...|...+.+.+.+..
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~  384 (402)
T PRK11902        316 CGGMGTAAFVALLMALCNRSFSATQY----ALLSALASV-GRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLA  384 (402)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence             2333334444455556665555444    444333323 55445568999999987 66666666555544433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-27  Score=201.60  Aligned_cols=325  Identities=15%  Similarity=0.075  Sum_probs=237.5

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCC-CchhHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP-QKTAWL   82 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~   82 (421)
                      +.+.+++.|.+.||+|+|..+++|++....+++++++.++++.++++|.+||+|.++..+...++++|.+|++ +|++++
T Consensus       119 qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vm  198 (464)
T KOG3764|consen  119 QLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVM  198 (464)
T ss_pred             HHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHH
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999975 589999


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCC
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN  162 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (421)
                      |+.-.+.++|..+||++||.+.+..|.+.+|++.+++.++-..+.+++.+.+...   +++.++                
T Consensus       199 GialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~---~~~~~~----------------  259 (464)
T KOG3764|consen  199 GIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD---PDSTEQ----------------  259 (464)
T ss_pred             HHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC---cccccc----------------
Confidence            9999999999999999999999999999999999999999888888877432111   100000                


Q ss_pred             ccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH
Q 014646          163 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM  242 (421)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (421)
                                                     -.++++++++|.++.........+.......--++.+..+....+....
T Consensus       260 -------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~  308 (464)
T KOG3764|consen  260 -------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV  308 (464)
T ss_pred             -------------------------------CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcce
Confidence                                           0246788899998887766555555555555566677777776443333


Q ss_pred             HHH-hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHhccccch
Q 014646          243 MFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA---LFTVGELLVFATQAPV  318 (421)
Q Consensus       243 ~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  318 (421)
                      .+. ....+...++..+.|.+.||+++.+   |.....+.+..+..+......++....++   ..++.+........+.
T Consensus       309 G~~fLp~~~~y~ig~~lfg~la~k~~~~~---wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  309 GLAFLPASLSYAIGTNLFGKLADKYPHLR---WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             eeeecccccchhccCchHHHHHHhcCchh---HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            333 3345777899999999999999541   13333444444444434444444433333   3333333333444455


Q ss_pred             hhhhhcccCcc---hhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          319 NYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       319 ~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+..|....+   ..|...++....... |.++||.+.|.+.+..| +.+.....+...+.-.-++.
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sl-a~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSL-AYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHH-hhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHH
Confidence            55555554444   667888888655555 99999999999999988 66666666655555444443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=5.1e-26  Score=204.45  Aligned_cols=284  Identities=13%  Similarity=0.090  Sum_probs=206.6

Q ss_pred             hhHHHhhhhhc-----CchHH-HHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            8 SPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         8 ~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      .+++|+++||+     ||||. ++.+.++.++.....++.   .+++.+....++.+++.+...+...+++.|++|+|+|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            88999999998     89997 567777887777777777   4666677788888988888899999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcccc--------hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhh
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA  150 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g--------wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  150 (421)
                      +++.++...+.++|.++++.+++.+.+..+        ||..|++.++..++..+..++..||..+.  ++++ + .   
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~--~~~~-~-~---  190 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED--ASVP-K-P---  190 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc--cccc-h-h---
Confidence            999999999999999999999999988888        99999999987777655555444542111  0000 0 0   


Q ss_pred             cccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhh---HHHHHHHHHHHHHHHHHHHHHh
Q 014646          151 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV---YVVNVLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~  227 (421)
                                           +                 .++..+.+++++++|.   ++...+..++.....+....+.
T Consensus       191 ---------------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
T TIGR00901       191 ---------------------L-----------------TQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT  232 (356)
T ss_pred             ---------------------H-----------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 0                 0001124556666664   6666666666777777888899


Q ss_pred             hhHHHHhhccchhhHH-HHhh-HhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-----------
Q 014646          228 PKAGYNIYHMSNADMM-FGGV-TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----------  294 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  294 (421)
                      |.|+++ .+.+..+.. .... ..+..+++.++++++.||+++|     +.+....++..+........           
T Consensus       233 ~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T TIGR00901       233 TLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----YALLLFGIVQALTNAGFVWLASNGHHDGITF  306 (356)
T ss_pred             HHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            999988 777755543 2232 3356788999999999999987     55554444444433322221           


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHH
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSI  342 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (421)
                      ++.+......++.+++.+...+....+..+..|+++|++..|+.+...
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            223444445556677777888889999999999999999999986544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.95  E-value=1.9e-26  Score=211.62  Aligned_cols=332  Identities=16%  Similarity=0.064  Sum_probs=204.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhc---ccchhH-HHHHHHHHhhhhhhhhcccccccccccCC--C
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFW-SIAICRMLVGVGEASFISLAAPFIDDNAP--V   75 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~   75 (421)
                      +++.++++++|+++||+|||++++++..+.+++.....   .++... ......++.++..+.........+.++.+  .
T Consensus        57 l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (420)
T PRK09528         57 LFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS  136 (420)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH
Confidence            46778999999999999999999887666655433211   111111 01112222233333233232233333332  2


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +++++.++......++|..++|.+++.+.+. +|++.|++.+++.++..++.++..|+.++..   +..++.   +    
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~----  205 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDAPSTA---KVANAL---G----  205 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccccchh---hhccch---h----
Confidence            4567788999999999999999999998764 8999999988877766666555544321110   000000   0    


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                          ++++           +...++.+..+|+|.++...+........+.....+.|.|+.+..
T Consensus       206 --------------------~~~~-----------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~  254 (420)
T PRK09528        206 --------------------ANAS-----------AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF  254 (420)
T ss_pred             --------------------cccc-----------cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                0000           000123445677887766555544444445555556777766554


Q ss_pred             c---cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          236 H---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +   .+.... ....+..+...++.++.+++.||+++|     +.+.....+..+...+....++.+.......+.+...
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~  329 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----NALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEV  329 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2   222222 333555667788999999999999998     6665555555555444444556665555555555555


Q ss_pred             hccccchhhhhhcccCcchhHHHHHH-HHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .........+..+..|++.+++..+. .+...+ +|.+++|.+.|++.|..| |+..+...+.+.++...+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ-LGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHHHcCccceeeeeeehHHHHHH-HHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHH
Confidence            55555566777888899988887765 444444 488999999999999876 7788887776655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=4e-26  Score=211.13  Aligned_cols=309  Identities=14%  Similarity=0.121  Sum_probs=217.8

Q ss_pred             cccchhhHHHhhhhh----cCchH-HHHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhcccccccccc
Q 014646            3 GLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         3 g~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ..++..|+.|+++||    +|||| .++.+....+++.+++.+.++      ...+++.+++.+++.+...+...++..|
T Consensus        47 ~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  126 (437)
T TIGR00792        47 LDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPA  126 (437)
T ss_pred             HHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCccc
Confidence            467889999999998    67744 677888888888887776654      4566778889999998888888889999


Q ss_pred             cC-CCCCchhHHHHHHhHHHHHhHHHHHHHHHhh-------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccc
Q 014646           72 NA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  143 (421)
Q Consensus        72 ~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  143 (421)
                      .. ++++|++..++.+.+..+|..+++.+.+.+.       +..+||+.+.+.+++.++..++.++..||.++..  +++
T Consensus       127 ~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~--~~~  204 (437)
T TIGR00792       127 ITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI--PKN  204 (437)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC--Ccc
Confidence            87 4688999999999999998887776655544       2468999999999888777776666656532110  000


Q ss_pred             ccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHH
Q 014646          144 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                      ++.                                           ..+..+.++.++++|.++...+..++........
T Consensus       205 ~~~-------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       205 IEK-------------------------------------------KLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             ccc-------------------------------------------CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            000                                           0011234677889999988877777776666666


Q ss_pred             HHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-chhHHHHH
Q 014646          224 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-SSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  302 (421)
                      ..+.+.|.+...+.+.....+..+..++.+++.++.+++.||+|+|     +.+..+..+..+..+..... ++.+...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T TIGR00792       242 NGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGGILLMVLGYLIFFFAGSNLPLILV  316 (437)
T ss_pred             cchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            6666666655555333333444556788899999999999999988     66655555544444433332 34444455


Q ss_pred             HHHHHHHHHhccccchhhhhhcccC-------cchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ..++.+++.+...+...++..|..+       ++.+|.+.|+.+..... |..+++.+.|.+.+..|
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL-GQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            5566666666666667777777654       45689999999776666 88899999999988765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=9.3e-26  Score=205.76  Aligned_cols=325  Identities=11%  Similarity=0.023  Sum_probs=214.4

Q ss_pred             ccccchhhHHHhhhhhcCc-hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhccccccccc--------cc
Q 014646            2 VGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFID--------DN   72 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~--------~~   72 (421)
                      ++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+...++..        |.
T Consensus        49 ~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~  128 (418)
T TIGR00889        49 IAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDV  128 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCc
Confidence            4678899999999999965 77889999999899988899999999999999999987766665544421        22


Q ss_pred             CCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcc
Q 014646           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV  152 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  152 (421)
                      .....|.|.+|      .+|.+++|.+++.+.....|+ +|++.++..++..++ .+..||.++..   ++++..     
T Consensus       129 ~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~---~~~~~~-----  192 (418)
T TIGR00889       129 VTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAK---STAKMS-----  192 (418)
T ss_pred             hhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCc---cccccC-----
Confidence            23233445555      468888898888774333354 466666665555443 33446542110   000000     


Q ss_pred             cccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014646          153 SEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                                      ..                    +....+.+.++|+|.++...+..++..........+.|.+.+
T Consensus       193 ----------------~~--------------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (418)
T TIGR00889       193 ----------------IK--------------------VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLH  236 (418)
T ss_pred             ----------------HH--------------------HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHH
Confidence                            00                    000012345678888877777766666655566677788877


Q ss_pred             Hhhccc-------hhh-HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc-h---hHHH
Q 014646          233 NIYHMS-------NAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-S---LYGF  300 (421)
Q Consensus       233 ~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~  300 (421)
                      +.+..+       ... .....+..+..+++.+..+++.||+|+|     +.+..+.++..+......... +   .+..
T Consensus       237 ~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l  311 (418)
T TIGR00889       237 EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSLVAWALRFGFFAYGDPEYFGYALL  311 (418)
T ss_pred             HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence            643221       111 2334556677788899999999999998     777666666655544333322 1   2333


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc-----hhhhhhHHHHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-----WRKTTLALTSIF  375 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-----~~~~~~~~~~~~  375 (421)
                      ++..++.+.+.+...+....++.+.+|++.|++++|+.+...+.+|.++||.+.|++.|+.|+     |+..|.+.+++.
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~  391 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYI  391 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            444555666666666667788899999999999999996555555889999999999998753     667777766665


Q ss_pred             HHHHHHhh
Q 014646          376 FLAAGIWF  383 (421)
Q Consensus       376 ~~~~~~~~  383 (421)
                      +++.++..
T Consensus       392 ~i~~~l~~  399 (418)
T TIGR00889       392 AILAVLFM  399 (418)
T ss_pred             HHHHHHHH
Confidence            55544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.4e-25  Score=190.56  Aligned_cols=306  Identities=17%  Similarity=0.139  Sum_probs=246.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      .||.+.+++.|++.+|+|+|+.++.|+.++++++.+..   ...++..++++-++.|.|.+...++...++....++++.
T Consensus        59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a  138 (422)
T COG0738          59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA  138 (422)
T ss_pred             HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH
Confidence            57899999999999999999999999999999999984   667899999999999999999999999999999999889


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcc-------------------cchhHHHHHhHHHHHHHHHHHHhcc-ccccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGF  138 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------------------~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~  138 (421)
                      .+.+++.+..+++|.+++|++++.+..+                   -.||++|...+...++..+...... |+..+..
T Consensus       139 ~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~  218 (422)
T COG0738         139 AFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA  218 (422)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc
Confidence            9999999999999999999999888752                   2488889888877666655555443 3321110


Q ss_pred             CCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHH
Q 014646          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  218 (421)
                        +++.+..                                              .....+++++|.++...+..+++..
T Consensus       219 --~~~~~~~----------------------------------------------~~~~~~l~~~~~~~~gvl~~FlYVG  250 (422)
T COG0738         219 --PSLGASG----------------------------------------------SAGLSSLFQNKHLRLGVLAIFLYVG  250 (422)
T ss_pred             --ccccccc----------------------------------------------cchHHHHHhChHHHHHHHHHHHHHh
Confidence              0000000                                              0135678899999999999999999


Q ss_pred             HHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchh
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      .......|++.|+.+..+.++.+. .+.+..+.+.++|++++.++.+|+...     +.+....++..+.++.....++.
T Consensus       251 ~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-----k~Laf~a~~~ill~~~~~l~~g~  325 (422)
T COG0738         251 AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-----KYLAFYALIAILLLLAVALIGGV  325 (422)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHhcCh
Confidence            999999999999999877776555 556788899999999999999999887     77777777777777666666664


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  364 (421)
                      .. +....+.+++.+..+|...+...+..| ++...+.++.  .+..+|+++-|++.|++.|..|..
T Consensus       326 v~-~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l--~maivGGAiiP~l~G~i~d~~g~~  388 (422)
T COG0738         326 VA-LYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLL--VMAIVGGAIIPPLQGVIADMFGIQ  388 (422)
T ss_pred             HH-HHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceee--eeheecchHHHHHHHHHHHhhhhH
Confidence            43 445566788888999999999999998 6555566654  445568888999999999998743

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.9e-28  Score=206.31  Aligned_cols=376  Identities=16%  Similarity=0.153  Sum_probs=240.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccch-------hHHHHHHHHHhhhhhhhhcccccccccccCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-------FWSIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      +|.++||++.|+++||+|||+++...+++..+++++++++..       ..++...|+++|+|.|+-+|.+.+..+|...
T Consensus        95 vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an  174 (538)
T KOG0252|consen   95 VGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN  174 (538)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh
Confidence            688999999999999999999999999999999998887632       5678899999999999999999999999999


Q ss_pred             CCCchhHHHHHHhHHHHHhHHHHHHHHHhhcc---------------cchhHHHHHhHHHHHHHHHHHHhcccccccccC
Q 014646           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  139 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  139 (421)
                      ++.||...+...+..+.|...|.+++-.+..-               .=||..|.+.+++++..... -+..||+.+...
T Consensus       175 ~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl~M~Et~~Y~a  253 (538)
T KOG0252|consen  175 KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RLKMPETARYTA  253 (538)
T ss_pred             hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hhcCCcchhHHH
Confidence            99999999999888888888888777655410               13999999888766443322 223377665431


Q ss_pred             CcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHH
Q 014646          140 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  219 (421)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  219 (421)
                      ..++.......+         ..+....+++++...+. ..   .+..+....+.+.+... .-+.+...+..++.....
T Consensus       254 l~~~~~~~a~~d---------~~k~~~~~~~~~~~~~~-~~---~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia  319 (538)
T KOG0252|consen  254 LVSKKLKQAAGD---------MKKVLSVDIEAESTAES-DV---PPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA  319 (538)
T ss_pred             HhhcCHhhhhhc---------cccccccccchhhcccc-CC---CCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh
Confidence            111110000000         00000001111111000 00   00001111111111111 224556667778888888


Q ss_pred             HHHHHHHhhhHHHHhhccchhh--------H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 014646          220 IGAYSYWGPKAGYNIYHMSNAD--------M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  290 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (421)
                      ++....+....+++..-.+...        + .-..+.....++|..+...++|++||+     +..+..+++..+..+.
T Consensus       320 fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~  394 (538)
T KOG0252|consen  320 FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFV  394 (538)
T ss_pred             hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHH
Confidence            8888888877776533222111        1 111223344455777788899999998     6666666666666555


Q ss_pred             HHhhch----hHHHHHHHHHHHHHHh-ccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh-----h
Q 014646          291 AFCLSS----LYGFLALFTVGELLVF-ATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----H  360 (421)
Q Consensus       291 ~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~  360 (421)
                      +....+    .....++..+..++.. +-......+.+|.+|.+.|++..|+. ...+-+|++++...+.++.+     .
T Consensus       395 ~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIs-AA~GK~GAivg~~~F~~~t~~~yp~~  473 (538)
T KOG0252|consen  395 IAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGIS-AASGKAGAIVGAFGFLYLTDHNYPPN  473 (538)
T ss_pred             HcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHH-HHhccchHHHHHHHhhHhhhccCCcc
Confidence            544333    2334444455444443 44555566777888889999999999 55555699999999999888     4


Q ss_pred             hhchhhhhhHHHHHHHHHHHHhhhheeeec-cccccccccccc
Q 014646          361 VNNWRKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQI  402 (421)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  402 (421)
                      .+ .+..+++.+.+...+.+..+   .+|| +++..++.+++.
T Consensus       474 ~g-~~~v~~i~~~~~~~gi~~T~---l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  474 IG-VRNVFIILAGCMLLGILFTL---LIPETKGKSLEEISNEE  512 (538)
T ss_pred             cc-chHHHHHHHHHHHHhHheeE---EeecccccCHHHhcChh
Confidence            33 66778887777777766655   3344 777777665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=1.6e-25  Score=203.95  Aligned_cols=329  Identities=13%  Similarity=0.065  Sum_probs=213.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhh---cccc-----hhHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSF-----DFWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      +++.+++++.|+++||+|||+.++.+....+++....   .+.+     .+..+++.|++.|++.+...+....+..|..
T Consensus        49 l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  128 (396)
T TIGR00882        49 LFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS  128 (396)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh
Confidence            4577899999999999999999988777665544322   1222     2334566788889888888887777776643


Q ss_pred             CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccc
Q 014646           74 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  153 (421)
Q Consensus        74 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  153 (421)
                      +  ++++.++......++|.+++|.+++.+.+ .+||.+|++.+++.++..++.+...|+.+++    ++.+..   .  
T Consensus       129 ~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~--  196 (396)
T TIGR00882       129 R--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVANA---L--  196 (396)
T ss_pred             h--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhcc---c--
Confidence            2  34567788888889999999999998865 5999999999888877766655544432111    000000   0  


Q ss_pred             ccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 014646          154 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (421)
                       +                 .+   ++           +...++.++++|+|.++...+..++....+.....+.|.|+++
T Consensus       197 -~-----------------~~---~~-----------~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~  244 (396)
T TIGR00882       197 -G-----------------AN---AS-----------AFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTS  244 (396)
T ss_pred             -c-----------------cc---cC-----------CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0                 00   00           0001235677888888776666555555566666677888776


Q ss_pred             hhc---cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 014646          234 IYH---MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGEL  309 (421)
Q Consensus       234 ~~~---~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (421)
                      ..+   .+.... ....+..+...++.+..+++.||+++|     +.+.....+.++........++.+.......+.+.
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~  319 (396)
T TIGR00882       245 FFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAF  319 (396)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            552   222222 233455667777888999999999998     66655555555444444445555555555555555


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHH-HHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHH
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAI-STVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  381 (421)
                      +..........+..+..+++.++++.+. .+.... +|+.++|.+.|++.|..| +...|.+.+++.++....
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~-lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       320 EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ-LAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH-HHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            5444333444456666777777777666 444444 488999999999999876 777888777665554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=2e-26  Score=193.08  Aligned_cols=342  Identities=13%  Similarity=0.034  Sum_probs=207.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.+.++.+|.++||+|||+++++++...++...+.+++.|+..+++.|++.|+..| ...+..++++|.+++|+|++.
T Consensus        79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~  157 (451)
T KOG2615|consen   79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLG  157 (451)
T ss_pred             HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccce
Confidence            4678899999999999999999999999999999999999999777778999999998 556788999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhc---ccchhHHHHHhHHHHHHH----HHHHHhcccccccccCCcccccchhhhcccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAILMLPF----AVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~---~~gwr~~f~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      ++......++|.++||.+|+++..   ..| +.+|.....+..+.    .....++.||+.+.++..+++...       
T Consensus       158 ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~-------  229 (451)
T KOG2615|consen  158 MSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTL-------  229 (451)
T ss_pred             eeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccch-------
Confidence            999999999999999999999987   222 22233322222222    222333458876543222111100       


Q ss_pred             cccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 014646          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                                 ++...++.+..+.+.       .......++.+..........+.+..+.+...+....++.+.+..+.
T Consensus       230 -----------~~~~~~~~~~~~~~~-------~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~r  291 (451)
T KOG2615|consen  230 -----------QEAADDRLALLKFAR-------IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGR  291 (451)
T ss_pred             -----------hhhhhhhhhhcchhh-------hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCc
Confidence                       000000000000000       00000000111100111222333444555555555556566565666


Q ss_pred             hccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhcc
Q 014646          235 YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFAT  314 (421)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (421)
                      +++++.+...  +....++.+.++.+.+..+..+........+.....++.-..++...............+..+.....
T Consensus       292 fg~ss~~~G~--vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  292 FGYSSMQQGK--VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             cCCChhhhee--eeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            7777544321  22233444445555555555443211112233333333333444444445555566666666777777


Q ss_pred             ccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHH
Q 014646          315 QAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTS  373 (421)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  373 (421)
                      .+....+.....|+++||+.+|+....... +-++||.+.|.+..+...-+.++...+.
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~al-aRaiGPlv~g~i~~Ws~~~~~a~~~~~~  427 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGAL-ARAIGPLVSGVIFSWSQGAQPAYIAWGA  427 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHH-HHHhhhhhhheeEEEecCCCceeeehHH
Confidence            777888888889999999999999655554 9999999988887765433344443333

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=1.6e-25  Score=196.98  Aligned_cols=327  Identities=10%  Similarity=0.017  Sum_probs=223.4

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|... +...++..|+|+++|+++
T Consensus        73 ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra  151 (511)
T TIGR00806        73 YSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA  151 (511)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhH--HHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA--ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      .++..++..+|.++++++++. ...+|||+.+.+.-  +.+...++++-+++|...+..--.++++..  .....+.+..
T Consensus       152 tsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~--~~~~~~~~~~  228 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR--GALPCELDQM  228 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc--cccccccccC
Confidence            999999999999999999999 45679997665542  233344444455556322211000000000  0000000000


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                      ...+.         . +.. ...+.......+..+.+++...+||.+....+-+.+...+++.+.+|....-++....++
T Consensus       229 ~~~~~---------~-~~~-~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~  297 (511)
T TIGR00806       229 VPGPG---------G-KLE-DYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLN  297 (511)
T ss_pred             CCCCc---------c-ccc-hhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCcc
Confidence            00000         0 000 000011113345667778888899999888888888888888888877776655533221


Q ss_pred             -hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          240 -ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                       .....-++..+.+.+.++..|++-.++.+.   ....+.+..++.+..++++...++.|...+...+.........+..
T Consensus       298 ~yNG~veA~~tllga~~a~~ag~~~~~w~~~---~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia  374 (511)
T TIGR00806       298 KYNGAVDAASTLLGAITSFIAGFVNIRWARW---SKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIA  374 (511)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhhcCCchhh---HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence             111222444556667777888874444221   0133445555556666677777899988888888888888887777


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhc
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFG  346 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g  346 (421)
                      ..-++.....+.-|...|++++..-.+-
T Consensus       375 ~~~iA~~L~~~~~aLvFGiNtfvAl~LQ  402 (511)
T TIGR00806       375 TFQIASSLSKELCALVFGINTFVATALK  402 (511)
T ss_pred             HHHHHHHhcccceEEEEecHHHHHHHHH
Confidence            8888888877888999999865544433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=1.7e-24  Score=200.07  Aligned_cols=343  Identities=13%  Similarity=0.054  Sum_probs=203.9

Q ss_pred             chhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHhhhhhhhhcccccccccccCCCC--CchhH
Q 014646            6 VASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVGEASFISLAAPFIDDNAPVP--QKTAW   81 (421)
Q Consensus         6 ~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~   81 (421)
                      +..+++|+++|| +||||+++++.++++++++.++++++... ++++|+++|+|.|...|...+++.|.+|++  +|+++
T Consensus        65 ~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~  144 (489)
T PRK10207         65 GLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGA  144 (489)
T ss_pred             HHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcc
Confidence            456789999999 99999999999999999999999887554 557999999999999999999999999877  45779


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccC-CcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++++.+.++|..+||.+++++.+++|||+.|++.++ +++..++.+...++..++.+ ++++.+.+...........  
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~--  221 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS--  221 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH--
Confidence            9999999999999999999999999999999999755 44444444444443322211 1101000000000000000  


Q ss_pred             CCccccccchhhhhhhhhcccccchhh-------hhhhhhhhhhHhhhchhhHHHHHHH--HHHHHHHHHHHHHHhhhHH
Q 014646          161 LNDHVSEDISDQASERSIKSIGESRFL-------NQLSQFSQDTKVLLQEKVYVVNVLG--YIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  231 (421)
                          ..-...-....+...........       .-..+. ....+.+|+|.+....+.  .......+....+.++.+.
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~  296 (489)
T PRK10207        222 ----VVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFA  296 (489)
T ss_pred             ----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence                00000000000000000000000       000000 001134455554433322  2333333444445666666


Q ss_pred             HHhhcc-----chhhHHHHhhHhHHHHHHHhHHHHHHHhhccccc--chhhHHHHHHHHHHHHHHHH-----Hhh-----
Q 014646          232 YNIYHM-----SNADMMFGGVTIVCGIVGTISGGFILDQMGATIS--NAFKLLSAATFLGAISCLTA-----FCL-----  294 (421)
Q Consensus       232 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~-----  294 (421)
                      ++..+.     ......+..+..+..++..++.+++.||+++|..  +....+..+.++..+..+.+     ...     
T Consensus       297 ~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~  376 (489)
T PRK10207        297 INNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGL  376 (489)
T ss_pred             HHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Confidence            643222     2122233334445566777778899999988732  11112333333333222211     111     


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+.+..+....+.+.+.....++....+.+..|++.++.++|+.+...+. |+.++..+....
T Consensus       377 ~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i-g~~lg~~l~~~~  438 (489)
T PRK10207        377 TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA-AFLLGGYVATFT  438 (489)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence            23455666777788888889999999999999999999999999766555 777766555433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.93  E-value=6.1e-24  Score=196.44  Aligned_cols=374  Identities=11%  Similarity=0.025  Sum_probs=219.7

Q ss_pred             ccccchhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCC---
Q 014646            2 VGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ---   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---   77 (421)
                      +++.++++++|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|++.|...+...++++|++|+++   
T Consensus        59 ~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~  138 (475)
T TIGR00924        59 ALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR  138 (475)
T ss_pred             HHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc
Confidence            3567889999999999 899999999999999999999999999999999999999999999999999999998764   


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      |++++++++.+.++|.++||.+++++.+++|||+.|++.++..++.. +.++..++..++.++++++...  ++......
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  215 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDPLSG--QGKTYGKL  215 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCCcch--hhhhhHHH
Confidence            88899999999999999999999999998999999999886554443 3333333322111100000000  00000000


Q ss_pred             ccCCCccccccchhhhhhhhhcccccch-------hh---hhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014646          158 ASNLNDHVSEDISDQASERSIKSIGESR-------FL---NQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (421)
                      ...................+........       ..   ....+...+..+-.|...+..+.+...++...+....+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l  295 (475)
T TIGR00924       216 LLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSL  295 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            0000000000000000000000000000       00   0000000000011122233444444445555555556667


Q ss_pred             hhHHHHhhccch-----hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhH--HHHHHHHHHHHHHHHHh-------
Q 014646          228 PKAGYNIYHMSN-----ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKL--LSAATFLGAISCLTAFC-------  293 (421)
Q Consensus       228 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------  293 (421)
                      +.+.++..+.+.     ....+.++..+.-++..++..++..|..||.......  +..+.++.++++.....       
T Consensus       296 ~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~  375 (475)
T TIGR00924       296 NFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA  375 (475)
T ss_pred             HHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            776665433321     1223444555555555555444444555431111111  23444444444333321       


Q ss_pred             --hchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHH
Q 014646          294 --LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  371 (421)
                        ..+.+..+....+.+.+.....+....+..+..|++.|++.+|+....... |..+++.+.....+..+ +...+...
T Consensus       376 ~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~-g~~l~~~~~~~~~~~~~-~~~~~~~~  453 (475)
T TIGR00924       376 GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM-GSLLGGYLATFGAVPQG-VTGVFGKI  453 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-hhhHHHHH
Confidence              246667777888888999899999999999999999999999999655544 88888777776655433 44444444


Q ss_pred             HHHHHHHHH
Q 014646          372 TSIFFLAAG  380 (421)
Q Consensus       372 ~~~~~~~~~  380 (421)
                      +..+++..+
T Consensus       454 ~~~~~~~~~  462 (475)
T TIGR00924       454 GLVTLLVGV  462 (475)
T ss_pred             HHHHHHHHH
Confidence            444443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=1e-23  Score=193.35  Aligned_cols=344  Identities=12%  Similarity=0.071  Sum_probs=216.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.++..++.|+++|.||||.+++.+.++..+|+++++.++|...++.+..+.|+|.|... .....++|..|.|.|+..
T Consensus        89 l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~  167 (599)
T PF06609_consen   89 LASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLG  167 (599)
T ss_pred             HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhH
Confidence            4567888999999999999999999999999999999999999999999999999987665 455668999999999888


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc-ccccccccCCcccccchhhhccc-------
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVS-------  153 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~-------  153 (421)
                      .++.....-+....++.++..+..+.+|||.|++..+...+..++.+++ .|.+.+..+.++..++...++.+       
T Consensus       168 ~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~  247 (599)
T PF06609_consen  168 LAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLF  247 (599)
T ss_pred             hHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHH
Confidence            8877776666666788888877777799999999998876665554433 34322111111110100000000       


Q ss_pred             --------cccc------ccCCCccccccchhhhhhhhhcccccchhhhh---hhhhhhhhHhhhch-hhHHHHHHHHHH
Q 014646          154 --------EGSE------ASNLNDHVSEDISDQASERSIKSIGESRFLNQ---LSQFSQDTKVLLQE-KVYVVNVLGYIA  215 (421)
Q Consensus       154 --------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~~~~~~~~~  215 (421)
                              -.+.      ....+......+.-.--.-.     ---.++.   .++... ..+++++ |.+...++..++
T Consensus       248 ~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv-----~F~~wE~~~~~~~Pl~-P~~Lf~~~r~~~~~lvi~fi  321 (599)
T PF06609_consen  248 IAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLV-----AFVVWEWFGAPKDPLF-PHRLFKDRRGFAALLVISFI  321 (599)
T ss_pred             HHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHH-----HHHHhhhhccCCCCcC-CHHHhccchHHHHHHHHHHH
Confidence                    0000      00000000000000000000     0000000   011112 2356776 556666666677


Q ss_pred             HHHHHHHHHHHhhhHHHHhhccchh----hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Q 014646          216 YNFVIGAYSYWGPKAGYNIYHMSNA----DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  291 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (421)
                      ....++....+.|......++.++.    ..........+..++.++.+.+..+++|-+    ..++.+..+..+.+..+
T Consensus       322 ~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K----w~li~~~~~~ta~~Gam  397 (599)
T PF06609_consen  322 SGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK----WQLIFGSVLMTAFCGAM  397 (599)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh----HHHHHHHHHHHHHHHHH
Confidence            7777788888888887777766542    223445566777788888899988886542    33333343333332222


Q ss_pred             --HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          292 --FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                        .-.++....+.+..+.+++.+....+.....+-..|+++.+++.|+. ...+.+|+.+|..+..-+
T Consensus       398 a~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~-~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  398 AAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLT-GSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence              22334445566677778888777777777777788999999999999 555555777776665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.4e-23  Score=175.65  Aligned_cols=322  Identities=13%  Similarity=0.053  Sum_probs=243.2

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+......+.+|.+.+|+| -+..
T Consensus        58 l~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~m  135 (395)
T COG2807          58 LAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLM  135 (395)
T ss_pred             HHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhH
Confidence            3456788999999999999999999999999999998887 7888889999999999999999999999999976 8999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      +++|....++|..+++.+...+.++. |||......+.++++..+.++   |...+.+....+.+               
T Consensus       136 tglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~r~~~~~~~~~---------------  197 (395)
T COG2807         136 TGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQALREQAASIATK---------------  197 (395)
T ss_pred             HhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcccccccccccc---------------
Confidence            99999999999999999999998877 799999999988877665554   44222110011100               


Q ss_pred             CCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh
Q 014646          161 LNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (421)
                                                       ..+...++|+|.-|.+.+.+.+++..++....|+|.++.|.+-.++.
T Consensus       198 ---------------------------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~  244 (395)
T COG2807         198 ---------------------------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE  244 (395)
T ss_pred             ---------------------------------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                                             01233578999999999999999999999999999999986544444


Q ss_pred             hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhh
Q 014646          241 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNY  320 (421)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (421)
                      +..+.++..+.+++.++....+.+|...++    ........+..+..+.+.+.+....+.. ..+.|++.+..++....
T Consensus       245 aG~llsl~~l~~~~~~ll~P~la~R~~n~r----~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~  319 (395)
T COG2807         245 AGSLLSLMQLAQLPTALLIPLLARRSKNQR----PLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALT  319 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHH
Confidence            446667788899999999999999854432    4444444444333333323332222222 46677777777777777


Q ss_pred             hhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          321 VCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       321 ~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+.+...+ +..+.-+|+.+...+.++ ..||.++|++.|..|+|...+.......+.....-
T Consensus       320 li~~rs~~a~~Aa~LSgmaQg~GYllA-a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         320 LILLRSSDAAIAAALSGMAQGVGYLLA-AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             HHHhhcCChHHHHHHHHHhhhhhHHHH-hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            77766554 677777788877777755 56999999999999999888777766655444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=9.9e-23  Score=185.29  Aligned_cols=316  Identities=11%  Similarity=-0.029  Sum_probs=206.7

Q ss_pred             chhhHH-HhhhhhcCchHHHHHHHHHH-HHHHhh---hcccch-hHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            6 VASPIF-ASLAKSHNPFRLIGVGLSVW-TFATAG---CGSSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         6 ~~~~~~-g~l~dr~Grr~~l~~~~~~~-~~~~~~---~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +.+|++ ++..||+||||..++.+.+. ......   .....+ ...++..-++.++..+...+...++..|..++++++
T Consensus        53 l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~  132 (390)
T TIGR02718        53 LWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA  132 (390)
T ss_pred             HHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh
Confidence            445556 44678889999865555332 211211   112322 334444556666777777888888888999888889


Q ss_pred             hHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccccc
Q 014646           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEAS  159 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (421)
                      ...+....+..+|.++|+...+++.+++|||..|++.+++.++..+..++..|+.+++   +++++ .            
T Consensus       133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~-~------------  196 (390)
T TIGR02718       133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS---PEAPL-A------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc---cccch-h------------
Confidence            8899999999999999999999999999999999999988877666655554331110   00000 0            


Q ss_pred             CCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch
Q 014646          160 NLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (421)
                                                       ...++++++|+|.++......++..........+.+.|++| .+.++
T Consensus       197 ---------------------------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~  242 (390)
T TIGR02718       197 ---------------------------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPL  242 (390)
T ss_pred             ---------------------------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCH
Confidence                                             01235667788888777776777777677777788888887 57776


Q ss_pred             hhHHHH-hhHh-HHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh------hchhHHHHHHHHHHHHHH
Q 014646          240 ADMMFG-GVTI-VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC------LSSLYGFLALFTVGELLV  311 (421)
Q Consensus       240 ~~~~~~-~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  311 (421)
                      ...... .... ...+++.++.|++.||++++     +.+.....+.....+....      ..+.........+.++..
T Consensus       243 ~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (390)
T TIGR02718       243 EWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-----RTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT  317 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence            554332 3333 45667788999999999988     5555444333222221111      112222222233334445


Q ss_pred             hccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHH
Q 014646          312 FATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  378 (421)
                      +...+.......+..++ +.+++.+++.+...+. |..++|.+.|.+.|..| +...+...+.+.+.+
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l-g~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL-GELIASSIAGYLTDRFG-YAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHH
Confidence            55556666676677766 8999999999777766 99999999999999876 666776665554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=4.8e-22  Score=181.30  Aligned_cols=337  Identities=15%  Similarity=0.157  Sum_probs=251.8

Q ss_pred             ccchhhHHHhhhhhcCchHHHH-HHHHHHHHHHhhhccc-c-hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc--
Q 014646            4 LLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--   78 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--   78 (421)
                      .++..|+.|.++|+-|+||.++ +..++..+++.+..+. + +++...+.-++.-++.+.......+++.|..+++++  
T Consensus        83 ~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~  162 (477)
T PF11700_consen   83 QALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVR  162 (477)
T ss_pred             HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhh
Confidence            4567889999999998777654 4455555566666653 3 444444455555567777788888999999999888  


Q ss_pred             ------------------------hhHHHHHHhHHHHHhHHHHHHHHHhhc--------ccchhHHHHHhHHHHHHHHHH
Q 014646           79 ------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVL  126 (421)
Q Consensus        79 ------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~  126 (421)
                                              ++..+.-.....+|.++.-.+.-.+..        ..+-|..+.+.++.-++..+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP  242 (477)
T PF11700_consen  163 AAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIP  242 (477)
T ss_pred             hhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHH
Confidence                                    899888888888888887776655431        223588888888888888888


Q ss_pred             HHhcccccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhH
Q 014646          127 AFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY  206 (421)
Q Consensus       127 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  206 (421)
                      .++..|+.++....++..+.                                       ....+++.++.+|++.+.|..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~g~~~l~~t~k~~~~~~~~  283 (477)
T PF11700_consen  243 LFLWLPDRPGPRPLPSGSSY---------------------------------------LRFGFKRLWRTFKEIRKLRQL  283 (477)
T ss_pred             HHHhCCCCCCCCCCCcchhH---------------------------------------HHHHHHHHHHHHHHHHhChHH
Confidence            88777765432111111110                                       113455666778888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHH
Q 014646          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ...+++++++.-+.+.+......|..+..+++..+. .+..+..+.+++|+++.+++.||+|.|..   +.+........
T Consensus       284 ~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~---~~l~~~l~~~~  360 (477)
T PF11700_consen  284 FLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK---RTLLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---HHHHHHHHHHH
Confidence            999999999999999999999999999999997666 44567789999999999999999998743   23333333222


Q ss_pred             HHHHHHHh--------hchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          286 ISCLTAFC--------LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       286 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      +..+....        .++.+.+.++..+.|.+.+..++..-++..+..|+++.+...|+++..... .+.+||.+.|.+
T Consensus       361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~-ss~lGPll~g~i  439 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA-SSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            22222222        456677777888899999999999999999999999999999999766666 889999999999


Q ss_pred             hhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          358 QDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+.+|+.+.++....++.+++.+++.
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            99999888888888888777776664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=99.91  E-value=6.6e-23  Score=189.35  Aligned_cols=375  Identities=11%  Similarity=-0.022  Sum_probs=235.3

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc------chhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      .+.+++.|+++||+|+|+++.++.++++++.++++++      ++++.+++.|++.|+|.+...+.....+.+|+| ++|
T Consensus        75 g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~R  153 (591)
T PTZ00207         75 GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNR  153 (591)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhh
Confidence            3466789999999999999999999999999999987      689999999999999999999999999999997 569


Q ss_pred             hhHHHHHHhHHHHHhHH-HHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhccccc--ccccCCc---ccccchhhh--
Q 014646           79 TAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ--LKGFAPA---ESGKAQVVA--  150 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~--~~~~~~~---~~~~~~~~~--  150 (421)
                      |++.++...+.++|.++ +++..+++.  .+|+..|++.+++.++..++.+.+.++.  +++..++   ++++...++  
T Consensus       154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~  231 (591)
T PTZ00207        154 GAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMR  231 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhh
Confidence            99999999999999976 555555554  3699999999999888888777766322  2211000   000000000  


Q ss_pred             -c----------cc---------------------------------------------c-------cccccCCCccccc
Q 014646          151 -S----------VS---------------------------------------------E-------GSEASNLNDHVSE  167 (421)
Q Consensus       151 -~----------~~---------------------------------------------~-------~~~~~~~~~~~~~  167 (421)
                       .          ..                                             .       ..+...++++.+.
T Consensus       232 ~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~  311 (591)
T PTZ00207        232 KGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDG  311 (591)
T ss_pred             hhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccc
Confidence             0          00                                             0       0000000000000


Q ss_pred             cchh--hhhhhhhcccc---cchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccc-hh-
Q 014646          168 DISD--QASERSIKSIG---ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMS-NA-  240 (421)
Q Consensus       168 ~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  240 (421)
                      +..+  +.+.+..+.+.   .........+..+++.+.+++..+|.+...+++.......+..++.+..+...+.+ .. 
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~  391 (591)
T PTZ00207        312 KAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA  391 (591)
T ss_pred             cccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc
Confidence            0000  00000000000   00000011111236777788999999999888887777777777888877764542 22 


Q ss_pred             -hHHHHhhHhHHHHHHHhHHHHHHHhhccccc---chhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhcccc
Q 014646          241 -DMMFGGVTIVCGIVGTISGGFILDQMGATIS---NAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       241 -~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (421)
                       ...+.++.++.+.+|++..|++.....+|..   ..+........+..+..+++...-+...+.+..++.+++.|..++
T Consensus       392 ~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~  471 (591)
T PTZ00207        392 LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAA  471 (591)
T ss_pred             ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHH
Confidence             2236688889999999999998733333321   111222222222333333333332324667788888999999999


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCc-hhHHHHhhhhhh------------chhhhhhHHHHHHHHHHHHhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPS-SPLVGVLQDHVN------------NWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~-~~~~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .....+.|.+. ++-|+-.-+.. ....+|+.+- -.+.|.++|+-.            -+..+|++++++++.+.+...
T Consensus       472 ~~~~i~selFg-k~~g~~yN~~~-~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        472 TIALVTRTIFA-KDPAKHYNFCF-LGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHhc-cchHHHhhHHh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            99999999888 87777766663 3333354432 456677777532            145678888777777766544


Q ss_pred             h
Q 014646          384 V  384 (421)
Q Consensus       384 ~  384 (421)
                      .
T Consensus       550 ~  550 (591)
T PTZ00207        550 Y  550 (591)
T ss_pred             h
Confidence            3

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=1.9e-21  Score=181.01  Aligned_cols=333  Identities=12%  Similarity=0.012  Sum_probs=186.6

Q ss_pred             hhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHhhhhhhhhcccccccccccCCCCC--chhHH
Q 014646            7 ASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--KTAWL   82 (421)
Q Consensus         7 ~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~   82 (421)
                      ..+++|+++|| +|||+++.++.++.+++..++++++ +.+.+++.|+++|++.|...+...+++.|++|+++  |..++
T Consensus        73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~  152 (500)
T PRK09584         73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF  152 (500)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence            34689999999 5999999999999999999998875 56677789999999999999999999999998654  45688


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccC-Ccccccchhhhcccc-------
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA-PAESGKAQVVASVSE-------  154 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~-------  154 (421)
                      ++++.+.++|..+||.+++++.+++|||+.|++.++..++..+..++. +...++.. ++++++.+.......       
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFC-QRWVKQYGSKPDFEPINYRKLLLTIVGVVAL  231 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-HHHhccCCCCCCccccchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999876544433332222 11111110 011000000000000       


Q ss_pred             --cccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014646          155 --GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY  232 (421)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (421)
                        .......+.+   ....... .....    ......++. ...++.-++|.+....  .+.....++......|.++.
T Consensus       232 ~~~~~~~~~~~~---~~~~~~~-~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~f~~~~~q~~~~l~  300 (500)
T PRK09584        232 IAIATWLLHNQE---IARMALG-VVALG----IVVIFGKEA-FAMKGAARRKMIVAFI--LMLEAIIFFVLYSQMPTSLN  300 (500)
T ss_pred             HHHHHHHHhcch---HHHHHHH-HHHHH----HHHHHHHHH-hhcCHHHHHHHHHHHH--HHHHHHHHHHHHHHhccHHH
Confidence              0000000000   0000000 00000    000000000 0001111222222211  12222333333344444432


Q ss_pred             H----h-----hccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc--------
Q 014646          233 N----I-----YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--------  295 (421)
Q Consensus       233 ~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  295 (421)
                      .    .     .+.......+..+..+..++..++.+++-+|.++|.... ..+..+.++.++..+.+....        
T Consensus       301 ~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~-~~~~~G~~l~~l~f~~l~~~~~~~~~~~~  379 (500)
T PRK09584        301 FFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMP-HKFAIGMVLCSGAFLVLPLGAKFANDAGI  379 (500)
T ss_pred             HHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            2    1     122211223344555555666666666667776664322 334444444444443332222        


Q ss_pred             -hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhH
Q 014646          296 -SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                       +.+.......+.+++.....+....++.+..|++.||+.+|+..... .+|..++..+
T Consensus       380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~-a~g~~~~g~~  437 (500)
T PRK09584        380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTT-AGAALIAGYV  437 (500)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence             13456667777888888888999999999999999999999874333 3244444333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.90  E-value=2.3e-21  Score=169.06  Aligned_cols=275  Identities=12%  Similarity=0.092  Sum_probs=197.3

Q ss_pred             cccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcc------------
Q 014646           39 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  106 (421)
Q Consensus        39 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------------  106 (421)
                      +...+|+.+++.-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999999999999999999999999999999999999999999987731            


Q ss_pred             ----cchhHHHHHhHHHHHHHHHHHHhcc-cccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhccc
Q 014646          107 ----LNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  181 (421)
Q Consensus       107 ----~gwr~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (421)
                          .+|+++|++.+.+.++..+...+.. ||..+     ++.+...                      +   +   +. 
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~~----------------------~---~---~~-  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARVS----------------------S---G---DT-  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccccc----------------------c---c---cc-
Confidence                4799999977776555555444332 33110     0000000                      0   0   00 


Q ss_pred             ccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh--hccchhhH-HHHhhHhHHHHHHHhH
Q 014646          182 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  258 (421)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  258 (421)
                                   ...+.++++|.++...+..+++.....+...|.+.|+.+.  ++.++... ...+....+.++|+++
T Consensus       131 -------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       131 -------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             -------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                         0012345677888777777887778889999999999864  46665444 4457778888999999


Q ss_pred             HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHH
Q 014646          259 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAIS  338 (421)
Q Consensus       259 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  338 (421)
                      ++++.||++++     +.+.....++.+..++....++... .....+.+++.+..+|...+...+..|+ +.+++.++.
T Consensus       198 ~~~l~~r~g~~-----~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~  270 (310)
T TIGR01272       198 GSAVMPMISQG-----RYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL  270 (310)
T ss_pred             HHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH
Confidence            99999999987     5555555544444443333333322 3345567788888888888888888765 456677775


Q ss_pred             HHHHHHhccCCchhHHHHhhhhhhchhhhhhH
Q 014646          339 TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       339 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  370 (421)
                       .... +|+.+.|.+.|.+.|..| .+.++++
T Consensus       271 -~~~~-~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       271 -CLAI-VGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             -HHHH-hcchHHHHHHHHHHHhcc-chHHHHH
Confidence             4444 588999999999999876 5555553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2.9e-21  Score=178.24  Aligned_cols=336  Identities=20%  Similarity=0.355  Sum_probs=252.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc--------------------c-------------------
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------------------F-------------------   42 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~-------------------   42 (421)
                      +|..+...+..+..-|.-|-|++-+|+++++++++++++-                    +                   
T Consensus       143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  222 (735)
T KOG3626|consen  143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS  222 (735)
T ss_pred             cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence            4667788899999999999999999999999999998762                    0                   


Q ss_pred             ----------h--hH-HHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhccc--
Q 014646           43 ----------D--FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--  107 (421)
Q Consensus        43 ----------~--~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~--  107 (421)
                                +  ++ .++++.++.|+|....++.+.+|+-|...+++-+..+|+......+|.++|.++++++...+  
T Consensus       223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD  302 (735)
T KOG3626|consen  223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD  302 (735)
T ss_pred             CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence                      0  22 56779999999999999999999999999999999999999999999999999999886321  


Q ss_pred             -----------------chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCccccccch
Q 014646          108 -----------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  170 (421)
Q Consensus       108 -----------------gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (421)
                                       -|..-|++.+.+.++.++..+++ |+..+....+.+.+..                   +..+
T Consensus       303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp~~~~~~~~~~~-------------------~~~k  362 (735)
T KOG3626|consen  303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELPKSQKRKRARDL-------------------HVLK  362 (735)
T ss_pred             cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCccccccchhhhh-------------------cccc
Confidence                             27777888888887777776666 5433321111000000                   0000


Q ss_pred             hhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH--HHHhhH
Q 014646          171 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFGGVT  248 (421)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  248 (421)
                      ++..    ..+......+..+++.+..+++++||.+...+++..+....+.++.+|+|.|++.+++.++..+  +.+.+.
T Consensus       363 ~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~  438 (735)
T KOG3626|consen  363 TESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIG  438 (735)
T ss_pred             cccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhh
Confidence            0000    1111122224567788889999999999999999999999999999999999999999996544  333455


Q ss_pred             hHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh-----------------------------------
Q 014646          249 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC-----------------------------------  293 (421)
Q Consensus       249 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  293 (421)
                      ..+..+|.+++|++++|+.-+.+...+..++..++..++....++                                   
T Consensus       439 vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C  518 (735)
T KOG3626|consen  439 VPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDC  518 (735)
T ss_pred             hhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCC
Confidence            566678999999999999766544334444444444444333322                                   


Q ss_pred             --------------------------------------------hc--------------------hhHHHHHHHHHHHH
Q 014646          294 --------------------------------------------LS--------------------SLYGFLALFTVGEL  309 (421)
Q Consensus       294 --------------------------------------------~~--------------------~~~~~~~~~~~~~~  309 (421)
                                                                  .+                    ....+++.+++..+
T Consensus       519 ~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf  598 (735)
T KOG3626|consen  519 SCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSF  598 (735)
T ss_pred             CCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHH
Confidence                                                        00                    12345556666667


Q ss_pred             HHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          310 LVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      ..+....+.+.++.+.+++|+|+.++|+..+..+++|.+-+|+++|++.|..
T Consensus       599 ~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  599 IGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             HHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            7778888899999999999999999999999999999999999999999965

>PRK09669 putative symporter YagG; Provisional

Probab=99.89  E-value=2.8e-21  Score=178.56  Aligned_cols=305  Identities=12%  Similarity=0.059  Sum_probs=196.2

Q ss_pred             ccchhhHHHhhhhh----cCch-HHHHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhccccccccccc
Q 014646            4 LLVASPIFASLAKS----HNPF-RLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         4 ~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      .++..|+.|+++||    +||| +.++.+.+..+++..+....++      +..+++.-++.+.+.........++.+|+
T Consensus        58 dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~  137 (444)
T PRK09669         58 DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAI  137 (444)
T ss_pred             HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHh
Confidence            45778999999998    7774 5566777777777665544443      45556666677777777777778899999


Q ss_pred             C-CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccc
Q 014646           73 A-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  144 (421)
Q Consensus        73 ~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  144 (421)
                      . ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.+++.++..++.++..+|..+.   ++++
T Consensus       138 t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~---~~~~  214 (444)
T PRK09669        138 TNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP---EVDN  214 (444)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC---CCcC
Confidence            8 45789999898888888888877765544332       34788888888887776666555554442111   0000


Q ss_pred             cchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHH
Q 014646          145 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS  224 (421)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (421)
                      +                                             .+..++++.+++||.++...+..++.........
T Consensus       215 ~---------------------------------------------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~  249 (444)
T PRK09669        215 S---------------------------------------------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRG  249 (444)
T ss_pred             C---------------------------------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh
Confidence            0                                             0112457778899998887776665555554444


Q ss_pred             HHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH-HHH-hhchhHHHHH
Q 014646          225 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAF-CLSSLYGFLA  302 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~  302 (421)
                      ...+.|.+...+.+.....+.....+..+++.++.+++.||+|+|     +..........+..+ ... ..++.+...+
T Consensus       250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (444)
T PRK09669        250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-----RAFKWTIVAFVILSALIFFIPPSNVWLIFA  324 (444)
T ss_pred             hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence            444444443333332222333444566778888999999999987     555444433332222 222 2345555565


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCc-------chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ..++.+++.+...+...++..|.++.       +..|...|..+..... |..+++.+.|.+.+..|
T Consensus       325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl-g~alg~~i~g~ll~~~G  390 (444)
T PRK09669        325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL-GLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            66667777777777778888777652       2345667777555555 88999999999988765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.89  E-value=4.2e-21  Score=178.42  Aligned_cols=309  Identities=7%  Similarity=-0.024  Sum_probs=195.1

Q ss_pred             cchhhHHHhhhh----hcCc-hHHHHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            5 LVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++..|+.|+++|    |+|| |+.++++.+..+++..++-..++      +..+++.-++.+++.....+...+++.|..
T Consensus        56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt  135 (473)
T PRK10429         56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLT  135 (473)
T ss_pred             HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhC
Confidence            466788999999    6698 55677788887777655543332      334555666778888888888899999998


Q ss_pred             -CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccccc
Q 014646           74 -PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 -~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                       +++||.+..++-..+.++|..+.+.+...+.+       ..+|+....+.+++.++..+..++..||......  ++.+
T Consensus       136 ~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~--~~~~  213 (473)
T PRK10429        136 LDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDN--QVSA  213 (473)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccc--cccc
Confidence             58899999998777777776666555443321       2357777777777666655555554455221100  0000


Q ss_pred             chhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014646          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      ..                                         +..+..+.++.+++||.++..+...++..........
T Consensus       214 ~~-----------------------------------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~  252 (473)
T PRK10429        214 EG-----------------------------------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIING  252 (473)
T ss_pred             cc-----------------------------------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            00                                         0001123456677898888887777777766666666


Q ss_pred             HhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-----hhchhHHH
Q 014646          226 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CLSSLYGF  300 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  300 (421)
                      +.+.|.+...+.+.....+.....+..+++.++.+++.||+|+|     +.+..+..+..+..+...     ...+.+..
T Consensus       253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (473)
T PRK10429        253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-----ILWAGASIFPVLSCGVLLLMGLAAPHNALLI  327 (473)
T ss_pred             heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Confidence            66666555444332222333445577788889999999999998     665544444333222221     12334444


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccC-------cchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVK-------PSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ++...+.+++.+...+...++..|.++       .+..|...|..+..... |..+++.+.|++.+..|
T Consensus       328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~-~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        328 VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG-GSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            445555666666666667777787755       23455577887555555 88889999999988665

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.87  E-value=1.7e-20  Score=172.46  Aligned_cols=306  Identities=16%  Similarity=0.152  Sum_probs=229.3

Q ss_pred             cchhhHHHhhhh----hcCchHH-HHHHHHHHHHHHhhhccc-c-------hhHHHHHHHHHhhhhhhhhcccccccccc
Q 014646            5 LVASPIFASLAK----SHNPFRL-IGVGLSVWTFATAGCGSS-F-------DFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         5 ~~~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ++..|+.|.++|    |+||||. ++++....+++.+++... +       ....+.+.-++..++.........++..|
T Consensus        51 ai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~  130 (428)
T PF13347_consen   51 AITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE  130 (428)
T ss_pred             hhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc
Confidence            466789999999    8997775 667888888888777766 4       22335667777788999999999999999


Q ss_pred             cCC-CCCchhHHHHHHhHHHHHhHHHHHHHHHhhcc-------cchhHHHHHhHHHHHHHHHHHHhcccccccccCCccc
Q 014646           72 NAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  143 (421)
Q Consensus        72 ~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  143 (421)
                      ..+ +++|.+..+.-..+..+|..+...+...+.+.       .+|++...+.+++.++..++..+..+|..+..  +++
T Consensus       131 lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~--~~~  208 (428)
T PF13347_consen  131 LTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEV--TEQ  208 (428)
T ss_pred             ccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccc--ccc
Confidence            998 57899999999999999887666666655432       16999999999988888777777766611110  000


Q ss_pred             ccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHH
Q 014646          144 GKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY  223 (421)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (421)
                      ++                                            ..+..+.++.+++||.++......++........
T Consensus       209 ~~--------------------------------------------~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  209 EK--------------------------------------------KISLRDSLRSLFRNRPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             cc--------------------------------------------ccccccchhhhcccchHHHHHHHHHHHHhhhhhh
Confidence            00                                            0112345778889999998888888888887777


Q ss_pred             HHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh--chhHHHH
Q 014646          224 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--SSLYGFL  301 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  301 (421)
                      ....+.|.+...+.+.....+.....+..+++.++.++++||+|+|     +.+..+..+.+...+.....  ++.+...
T Consensus       245 ~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (428)
T PF13347_consen  245 NTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----KVYIIGLLLAALGFLLLFFLGPGSPWLVL  319 (428)
T ss_pred             hhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----eehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence            7788888888877775445555667788899999999999999999     66666666666655554444  4778888


Q ss_pred             HHHHHHHHHHhccccchhhhhhcccCc-------chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          302 ALFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +...+.+.+.+..+....++..|..+.       +..|...|+.+..... +..+++.+.+.+.+..|
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~-~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI-GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH-HHHHHHHHHHHHHHHhC
Confidence            888888888888888888888887763       3457888888666555 88888888888877654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=3.9e-20  Score=158.77  Aligned_cols=333  Identities=14%  Similarity=0.103  Sum_probs=251.1

Q ss_pred             ccchhhHHHhhhhhcCchHH-HHHHHHHHHHHHhhhcccch---hHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            4 LLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFD---FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .++-+|+.|.++|+.|+||. +-....+..++.++..++++   ++..++.-.+..++.......-.+++.+..++++-+
T Consensus        71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~  150 (438)
T COG2270          71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG  150 (438)
T ss_pred             HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence            34667889999999996665 55556666666666666655   444555777788888888888999999999999888


Q ss_pred             hHHHHHHhHHHHHhHHHHHHH--HHh-h---------------cccchhHHHHHhHHHHHHHHHHHHhcccccccccCCc
Q 014646           80 AWLSMFYMCIPTGVALGYVYG--GVV-G---------------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  141 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~--~~l-~---------------~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  141 (421)
                      +..+.-.....+|.++.-++.  ..+ .               +...-|..+.+.++--++..+-.++..|+.++.. .+
T Consensus       151 riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~-~~  229 (438)
T COG2270         151 RISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS-SP  229 (438)
T ss_pred             cccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc-cc
Confidence            888777777777766655443  111 1               2234677777777766666666665554432210 00


Q ss_pred             ccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHH
Q 014646          142 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  221 (421)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  221 (421)
                      +                                        ++...+..++.+.+++++.+++.+...+++.+++.-+.+
T Consensus       230 ~----------------------------------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~  269 (438)
T COG2270         230 P----------------------------------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN  269 (438)
T ss_pred             c----------------------------------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH
Confidence            0                                        011124566677889999999999999999999999999


Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHH
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  300 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      ....+...|....+|.+..+. .+.....+.+++|+++.|++.||++.|     +++....++....++...+......+
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~~~~~~~~~~~~~~f  344 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSIAALYLIFLEGELDF  344 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHHHHHHHHHccccHHH
Confidence            999999999998999997666 455777899999999999999999998     66666666666666666656666666


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      +++..+.+.+.+..+...-++..+.+|+++-++..|+++...+. ++..||.+.+.+.+.+|+.+..+.....+..++..
T Consensus       345 ~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra-~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~  423 (438)
T COG2270         345 WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA-ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL  423 (438)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh
Confidence            66777788888889999999999999999999999999776666 88999999999999999887777777777666665


Q ss_pred             Hhh
Q 014646          381 IWF  383 (421)
Q Consensus       381 ~~~  383 (421)
                      .+.
T Consensus       424 ~L~  426 (438)
T COG2270         424 LLL  426 (438)
T ss_pred             hEE
Confidence            554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.87  E-value=9.6e-20  Score=165.14  Aligned_cols=342  Identities=13%  Similarity=0.034  Sum_probs=217.7

Q ss_pred             cccchhhHHHhhhh----hcCchHHHHHH-HHHHHHHHhhhcccchhHH-----------------HHHHHHHhhhhhhh
Q 014646            3 GLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFWS-----------------IAICRMLVGVGEAS   60 (421)
Q Consensus         3 g~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~~-----------------l~~~r~l~G~~~~~   60 (421)
                      ..++.+|+.|+++|    |+||||.++++ .....++..+.+++++.+.                 ++++-.+..++...
T Consensus        51 ~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~  130 (477)
T TIGR01301        51 SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM  130 (477)
T ss_pred             HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            34678899999999    59999998774 6666677777777766432                 22233344457777


Q ss_pred             hcccccccccccCCCCCc--hhHHHHHHhHHHHHhHHHHHHHHHh--hccc-------------chhHHHHHhHHHHHHH
Q 014646           61 FISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSHL-------------NWRYAFWGEAILMLPF  123 (421)
Q Consensus        61 ~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~~-------------gwr~~f~~~~~~~~~~  123 (421)
                      ..+...++++|.+|+++|  +.+.++.+...++|.++|+.+++..  .+.+             +.|..|++.+++.++.
T Consensus       131 ~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~  210 (477)
T TIGR01301       131 LQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAIL  210 (477)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHH
Confidence            888889999999998865  5799999999999999999999875  2211             5789999998887777


Q ss_pred             HHHHHhcccccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhch
Q 014646          124 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  203 (421)
Q Consensus       124 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  203 (421)
                      .++..+..||.+...  +++.+..       +.+             +.     ++..    .....++.++.++++  .
T Consensus       211 ~l~t~~~v~E~~~~~--~~~~~~~-------~~~-------------~~-----~~~~----~~~~~~~i~~~~~~m--P  257 (477)
T TIGR01301       211 TYIALSAVKENPLIG--SDDFINS-------EAA-------------PP-----SKHG----EEAFFGELFGAFKYL--P  257 (477)
T ss_pred             HHHHeeeeeccCCCc--cccchhh-------hcc-------------cc-----cccc----hhhhHHHHHHHHHHC--C
Confidence            777777777754221  1100000       000             00     0000    001122333334332  4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHH-Hhhccch-------hh---H-HHHhhHhHHHHHHHhHHHHHHHhhccccc
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSN-------AD---M-MFGGVTIVCGIVGTISGGFILDQMGATIS  271 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  271 (421)
                      +.++.+++..++...+.+.+..|.+.|.. +.++.++       ..   . .-..+..+...+.+++..++.+|+|+|+ 
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-  336 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence            67788888888888888888888887765 4454321       11   1 1123344444556666777888887531 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhch---------------------hHHHHHHHHHHHHHHhccccchhhhhhcccCc--
Q 014646          272 NAFKLLSAATFLGAISCLTAFCLSS---------------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP--  328 (421)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  328 (421)
                         .....+.++.+.++....+.++                     .+..++.+.+.|+........-++++.+..++  
T Consensus       337 ---~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~  413 (477)
T TIGR01301       337 ---RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLG  413 (477)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC
Confidence               3434444444444333322221                     35566777778888888888889999999985  


Q ss_pred             chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch-hhhhhHHHHHHHHHHHHh
Q 014646          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW-RKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~  382 (421)
                      +..|..+|+.|.+... ..++.....|.+.+..|+- ...+.+.++..+++.+..
T Consensus       414 ~~~G~~mgilN~~I~l-pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       414 AGQGLSMGVLNLAIVI-PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             CCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            4669999999988877 8887777777766666643 334444444444444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.87  E-value=1.2e-19  Score=162.71  Aligned_cols=307  Identities=19%  Similarity=0.141  Sum_probs=214.0

Q ss_pred             cccchhhHHHhhhhhcC-chHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            3 GLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ...++++++|.++||++ +||++.+..++.++........++++.+++.-++..+......|...++..++..+  ++.-
T Consensus        49 ~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~  126 (400)
T PF03825_consen   49 ARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKD  126 (400)
T ss_pred             HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCC
Confidence            34678899999999985 67788888888888777778888999888888888888887888888877777652  3444


Q ss_pred             HHHHHhHHHHHhHHHHHH-HHHhhccc---chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccc
Q 014646           82 LSMFYMCIPTGVALGYVY-GGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~-~~~l~~~~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      .|-.....++|.+++... +..+....   +..+.+++.+..+++.....+ ..|+.++++..+++.+..          
T Consensus       127 YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~----------  195 (400)
T PF03825_consen  127 YGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKL----------  195 (400)
T ss_pred             CCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccc----------
Confidence            555666666776666443 22333222   233456666655444443333 346544221111111000          


Q ss_pred             ccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Q 014646          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM  237 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (421)
                                                         ...+..+++|+|++....+..++.......+..+.+.|+++.++.
T Consensus       196 -----------------------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~  240 (400)
T PF03825_consen  196 -----------------------------------LGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGY  240 (400)
T ss_pred             -----------------------------------cchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence                                               012344688999999888888888888888999999999998865


Q ss_pred             chhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-chhHHHHHHHH----HHHHHH
Q 014646          238 SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-SSLYGFLALFT----VGELLV  311 (421)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~  311 (421)
                      +.... ...++..++.++.-...+++.+|+|.+     +++..+.+..++=..+.... ++.+...+...    +-+...
T Consensus       241 ~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf  315 (400)
T PF03825_consen  241 SGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF  315 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence            43332 333555677788888889999999887     77777777777665555554 44444333333    467777


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+.....++.+..|++.|+++.++++.....+|..+|..+.|++.|+.|
T Consensus       316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            777788889999999999999999999887777799999999999999876

>TIGR00788 fbt folate/biopterin transporter

Probab=99.86  E-value=1.7e-20  Score=173.09  Aligned_cols=317  Identities=14%  Similarity=0.017  Sum_probs=197.3

Q ss_pred             hhHHHhhhhhcC-----chHHHHHHHHHH-HHHHhhhcccchhHHHH-HHHHHhhhhhhhhcccccccccccCCCCCchh
Q 014646            8 SPIFASLAKSHN-----PFRLIGVGLSVW-TFATAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         8 ~~~~g~l~dr~G-----rr~~l~~~~~~~-~~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      .+++|+++||++     ||+.++++.++. .++....+..++..... +..++.+++.+...++.-++..|..+ +++..
T Consensus        77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~  155 (468)
T TIGR00788        77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA  155 (468)
T ss_pred             HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence            456999999998     777788887776 34444455555544444 48899999999999999999999998 44444


Q ss_pred             H---HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccccc
Q 014646           81 W---LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  157 (421)
Q Consensus        81 ~---~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  157 (421)
                      .   .+......++|.++|+.+++.+.+.++||..|++.+++.++..+. .++.||.+....++.+++..          
T Consensus       156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~~~~~~~~----------  224 (468)
T TIGR00788       156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERRAFVRPRIGTYLE----------  224 (468)
T ss_pred             CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhcccccccccccccccch----------
Confidence            3   334444456899999999999999999999999998887766333 34445532100000000000          


Q ss_pred             ccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHH-HHHHHHHHHHHhhhHHHHhhc
Q 014646          158 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  236 (421)
                               . .........         ....++...+.+..+++|.++...+..++ +...... ....-.+..+..+
T Consensus       225 ---------~-~~~~~~~~~---------~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~-~~~~f~~~~~~lG  284 (468)
T TIGR00788       225 ---------M-NMALLTLGV---------LANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA-SGSVFCATTQCLP  284 (468)
T ss_pred             ---------h-hhhhhhhhH---------HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC-CceeEEEEcccCC
Confidence                     0 000000000         00011112234455677877765554444 2211111 1100012234466


Q ss_pred             cchhhHH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-h---------hchhHHHHHHHH
Q 014646          237 MSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-C---------LSSLYGFLALFT  305 (421)
Q Consensus       237 ~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~  305 (421)
                      .++.... ......++.+++..+.+++.+|++.|     +.+....++.....+... .         .++.+.......
T Consensus       285 ~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r-----~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       285 GGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR-----LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            6655543 33555677778888888887777776     666666655555443321 0         122333444455


Q ss_pred             HHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          306 VGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +.+++.+....+...++.+..|++.+++..++.+...+. |..+++.+++.+.+..|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l-g~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL-GSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            667777778888899999999999999999999777665 89999999999998876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=6.7e-19  Score=160.38  Aligned_cols=126  Identities=14%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             ccchhhHHHhhhhhc-CchHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHhhhhhhhhcccccccccccCCCC--Cch
Q 014646            4 LLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP--QKT   79 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~   79 (421)
                      ..++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.+...+.++|.|...+...++++|.+|++  +|.
T Consensus        58 ~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~  137 (493)
T PRK15462         58 VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD  137 (493)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc
Confidence            456788999999999 999999999999999988776543 2233444445555667777787889999999875  688


Q ss_pred             hHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           80 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        80 ~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      .++++.+.+.++|..++|.+.+++.+.+|||+.|.+.++.. +.+++.++.
T Consensus       138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~~  187 (493)
T PRK15462        138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM-IAGLVIFLC  187 (493)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHHH
Confidence            99999999999999999999999999999999999976643 444444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.85  E-value=5.9e-23  Score=189.88  Aligned_cols=342  Identities=21%  Similarity=0.384  Sum_probs=3.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc---------------------------------------
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---------------------------------------   42 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---------------------------------------   42 (421)
                      ++.++..++..++.+|..|-|.+-+|.++.+++++++++-+                                       
T Consensus        49 i~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~  128 (539)
T PF03137_consen   49 IGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQD  128 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCcccc
Confidence            45677888899999998899999999999999999977520                                       


Q ss_pred             -----------hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcc-----
Q 014646           43 -----------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-----  106 (421)
Q Consensus        43 -----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-----  106 (421)
                                 -+..+++++++.|+|....++.+.+|+-|..++++-+..+|+..+...+|.++|.++++.+...     
T Consensus       129 ~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~  208 (539)
T PF03137_consen  129 CCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFP  208 (539)
T ss_dssp             -----------------------SSS------------------------------------------------------
T ss_pred             ccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCc
Confidence                       1356788999999999999999999999999999999999999999999999999999877632     


Q ss_pred             ----------------cc-hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCccccccc
Q 014646          107 ----------------LN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  169 (421)
Q Consensus       107 ----------------~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (421)
                                      .| |-.-|++.+.+.++.++..+++ |+..+...+.++.+...+                 ...
T Consensus       209 ~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~~~~-----------------~~~  270 (539)
T PF03137_consen  209 KVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKESSE-----------------RKE  270 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhhhhh-----------------cch
Confidence                            12 6666777777766666655555 554433211110000000                 000


Q ss_pred             hhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH--HHHhh
Q 014646          170 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM--MFGGV  247 (421)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  247 (421)
                      ++...++..+.+..+......+++++..+++++||.+....++.........++.+|+|.|++.+++.++..+  ..+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v  350 (539)
T PF03137_consen  271 EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIV  350 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhh
Confidence            0000000011111112235567778889999999999999999999999999999999999999999986444  23344


Q ss_pred             HhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--------------h-------------------
Q 014646          248 TIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--------------L-------------------  294 (421)
Q Consensus       248 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-------------------  294 (421)
                      ...++++|.+++|++++|++-+.+...+......++..+.....++              .                   
T Consensus       351 ~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~  430 (539)
T PF03137_consen  351 SIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSC  430 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCc
Confidence            4557789999999999999766444334433333333332111111              0                   


Q ss_pred             ------------------chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHH
Q 014646          295 ------------------SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       295 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                                        .....+++..++..+..+....+...+..+.+++++|+.|.|+.....+.+|.+-+|+++|.
T Consensus       431 ~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  431 CSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhH
Confidence                              01223444555555666677788888899999999999999999999999999999999999


Q ss_pred             hhhhh
Q 014646          357 LQDHV  361 (421)
Q Consensus       357 l~~~~  361 (421)
                      +.|..
T Consensus       511 iiD~t  515 (539)
T PF03137_consen  511 IIDST  515 (539)
T ss_dssp             -----
T ss_pred             HHhhh
Confidence            99953

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=6.7e-20  Score=147.87  Aligned_cols=317  Identities=11%  Similarity=0.001  Sum_probs=201.0

Q ss_pred             cchhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchh
Q 014646            5 LVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA   80 (421)
Q Consensus         5 ~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~   80 (421)
                      .+-+.++|++.|| +|-|..-++-+....++.++++   .++.+|++.++|++.|+|.-....+-..+..-|+..||.+.
T Consensus        93 vVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~  172 (459)
T KOG4686|consen   93 VVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNF  172 (459)
T ss_pred             EEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccc
Confidence            3456788999997 6887766666666666776655   46899999999999999988888888999999999999999


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhcccchh------H---HHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhc
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWR------Y---AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS  151 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr------~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  151 (421)
                      ++|+.....-+|..+--.+.+++.+..+=-      .   ..+..+.......+.+....    ..  .+++++.....+
T Consensus       173 vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~--~D~rAerilh~e  246 (459)
T KOG4686|consen  173 VFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GL--SDDRAERILHLE  246 (459)
T ss_pred             hhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hh--hhhHHHHHHhhh
Confidence            999999999999888777766666543210      0   01111111111111111111    00  001111000000


Q ss_pred             ccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 014646          152 VSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAG  231 (421)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (421)
                                            +....+.       .+    ..+.+.  -.|.+|.+.+...++......+....|.++
T Consensus       247 ----------------------~g~~Ge~-------pk----Ltdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF  291 (459)
T KOG4686|consen  247 ----------------------EGFLGEE-------PK----LTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFF  291 (459)
T ss_pred             ----------------------cCcccCC-------cc----cccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence                                  0000000       00    001111  247788888888888888888999999999


Q ss_pred             HHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH-HHHHHHHHHHHh-hchhHHHHHHHHHHH
Q 014646          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC-LSSLYGFLALFTVGE  308 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  308 (421)
                      ++.+|.++.++ ...+.....+.+.+++.|.++||+|++     ...+.+. +.....-..+.+ .-+++.-+   ++.|
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m---~~lG  363 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVASACILTLLGHSGLFFTFLSPYTSM---TFLG  363 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHHHHHHHHHHhhhHHhhhccHHHHH---HHHh
Confidence            99999997655 334555666777888999999999997     3332222 222222222222 22343333   3333


Q ss_pred             HHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHH
Q 014646          309 LLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  371 (421)
                      ..........+..+...+|+++.|++.|..+...+. |-.+.|++.|.+.|.-|+|.+.-.++
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNL-gla~i~Iiag~i~d~~g~y~~le~ff  425 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNL-GLAFIPIIAGFIADGDGSYDNLEAFF  425 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhh-hhhHHhhhhheeecCCCchhhHHHHH
Confidence            333333333555667778889999999999888887 98999999999999877665443333

>PRK11462 putative transporter; Provisional

Probab=99.85  E-value=7e-19  Score=162.38  Aligned_cols=303  Identities=13%  Similarity=0.034  Sum_probs=180.8

Q ss_pred             cchhhHHHhhhhh----cCchHH-HHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            5 LVASPIFASLAKS----HNPFRL-IGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~~~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++.-|+.|+++||    +||||. ++++.+..+++..++-..++      +..+.+.-++..++.......-.++..|..
T Consensus        59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt  138 (460)
T PRK11462         59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVIT  138 (460)
T ss_pred             HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence            4567899999996    687665 66677777777766554442      334555666678888888888889999998


Q ss_pred             C-CCCchhHHHHHHhHHHHHhHHHHHHHHHhhcc-------cchhHHHHHhHHHHHHHHHHHHhcccccccccCCccccc
Q 014646           74 P-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      + ++||++..++...+..+|..+++.+...+.+.       .+|+....+.+++.++...+++...+|..+.    ++++
T Consensus       139 ~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~----~~~~  214 (460)
T PRK11462        139 NDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA----PPTT  214 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC----CccC
Confidence            7 68899999999999999988887776554432       3588877777777666655555444442111    0000


Q ss_pred             chhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014646          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                      .                                             ...+.++..++|+.++......++..........
T Consensus       215 ~---------------------------------------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~  249 (460)
T PRK11462        215 T---------------------------------------------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGG  249 (460)
T ss_pred             C---------------------------------------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence            0                                             0123466778888887776555555444333333


Q ss_pred             HhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHH-HHHHHHhhc-hhHHHHHH
Q 014646          226 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI-SCLTAFCLS-SLYGFLAL  303 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~  303 (421)
                      ....|.+...+.+.....+.....++.+++.++++++.||+++|     +........... ..+...... +.....+.
T Consensus       250 ~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (460)
T PRK11462        250 AMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-----TIFWWTNALLAVISLAMFFVPMQASITMFVF  324 (460)
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            33333333344333222344556677888999999999999987     444322222222 222222112 22223333


Q ss_pred             HHHHHHHHhccccchhhhhhcccC-----cchh--HHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          304 FTVGELLVFATQAPVNYVCLHSVK-----PSLR--ALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      .++.+++.+...+....+..|..+     +..|  |...+..+..... |..+++.+.|.+.+..|
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl-g~alg~~i~g~iL~~~G  389 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL-GLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            344455444444444555555443     1133  4444555344444 88888888888887644

>PRK09848 glucuronide transporter; Provisional

Probab=99.84  E-value=5.2e-19  Score=163.76  Aligned_cols=305  Identities=10%  Similarity=0.002  Sum_probs=185.9

Q ss_pred             cccchhhHHHhhhhhc----CchHH-HHHHHHHHHHHHhhh-c----ccch--hHHHHHHHHHhhhhhhhhccccccccc
Q 014646            3 GLLVASPIFASLAKSH----NPFRL-IGVGLSVWTFATAGC-G----SSFD--FWSIAICRMLVGVGEASFISLAAPFID   70 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~----Grr~~-l~~~~~~~~~~~~~~-~----~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~   70 (421)
                      ..++..++.|+++||.    ||||. +.++.+...+..++. .    ++++  ...+++.-++.+++.+...+...++..
T Consensus        56 ~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  135 (448)
T PRK09848         56 FDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLAT  135 (448)
T ss_pred             HHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhh
Confidence            3467889999999996    77774 455555444444332 1    2222  223444556778888888887778877


Q ss_pred             ccCCC-CCchhHHHHHHhHH-----HHHhHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHHHHhcccccccccCCcc
Q 014646           71 DNAPV-PQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  142 (421)
Q Consensus        71 ~~~~~-~~r~~~~~~~~~~~-----~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  142 (421)
                      +..++ ++|.+..++-..+.     .++..++|.++....+..  +|.....+.++++++..++.+...||..+.    +
T Consensus       136 ~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~----~  211 (448)
T PRK09848        136 AMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR----I  211 (448)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC----C
Confidence            77654 67888776665443     345556666665432211  122222233333333333333333432110    0


Q ss_pred             cccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHH
Q 014646          143 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  222 (421)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (421)
                      +++                                             ....+.++.+++||.++...+..++.......
T Consensus       212 ~~~---------------------------------------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~  246 (448)
T PRK09848        212 VAQ---------------------------------------------PSLKISLQTLKRNRPLFMLCIGALCVLISTFA  246 (448)
T ss_pred             ccC---------------------------------------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            000                                             01123467888999999888887877777777


Q ss_pred             HHHHhhhHHHHhhccchhhHHHHhhH-hHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc--hhHH
Q 014646          223 YSYWGPKAGYNIYHMSNADMMFGGVT-IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYG  299 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  299 (421)
                      ...+.|.|.++..+.++....+.... .++.+++.++.+++.||+++|     +.+..+..+..+..+.....+  +.+.
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~~g~~~~~i~~~~~~~~~~~~~~~  321 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFLIGALLGTCGYLLFFWVSVWSLPV  321 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHcCchhHHH
Confidence            77778888888777665433333222 456677888999999999988     666655555444444333322  3444


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhcccCcc-------hhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          300 FLALFTVGELLVFATQAPVNYVCLHSVKPS-------LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ......+.+++.+...+...+...+..+.+       ..|...|+.+..... |..+++.+.+.+.+..|
T Consensus       322 ~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl-g~aig~~i~g~~l~~~G  390 (448)
T PRK09848        322 ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC-GQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            444455666777777777777777776543       458889998655555 88889989888877654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.81  E-value=6.7e-18  Score=148.45  Aligned_cols=329  Identities=15%  Similarity=0.112  Sum_probs=208.5

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHH---HHHhhhcccc----hhH-HHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGCGSSF----DFW-SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~~----~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      ..+.+|+.|.++||+|.||-++....+..   ...+...+.+    |.+ ..+++-+..|+......|+.-+++.++.. 
T Consensus        56 ~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr-  134 (412)
T PF01306_consen   56 ALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSR-  134 (412)
T ss_dssp             HHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH-
Confidence            45678999999999997776544432221   2222222222    221 22223333344444444445455544432 


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                       +.+.-.|-.-...++|.+++..++|.+.+. +-+..|++....+++..++.++..|+.++.....+..+.+        
T Consensus       135 -~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------  204 (412)
T PF01306_consen  135 -RNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------  204 (412)
T ss_dssp             -HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------
T ss_pred             -HhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------
Confidence             234556777788899999999999998863 5677888877766666666555555432221111100000        


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                                                       +.+...++..+++|+|++|...+........+..+....|.|..+.+
T Consensus       205 ---------------------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f  251 (412)
T PF01306_consen  205 ---------------------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF  251 (412)
T ss_dssp             --------------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ---------------------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                             00000234668889999999888766666667777666777777655


Q ss_pred             ccchhhH----HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          236 HMSNADM----MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      .......    .+.++..+..++...+..++.+|+|.|     +.++....+..+=.......++.+.....-.+-+.-.
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~  326 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEF  326 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            4432221    233555567788888999999999998     8888888777777777777888888888888887777


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ........-++.+.+|++..++...+.......+|.++.+.+.|.+.|+.| ++..+++.+.+.+...++.
T Consensus       327 ~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~  396 (412)
T PF01306_consen  327 PLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLIS  396 (412)
T ss_dssp             HHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHh
Confidence            777778888999999999988888886444444587888889999999987 6667777766654444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.79  E-value=7.7e-17  Score=143.17  Aligned_cols=308  Identities=10%  Similarity=0.036  Sum_probs=219.5

Q ss_pred             cchhhHHHhhhhh----cCchH-HHHHHHHHHHHHHhhhcccch------hHHHHHHHHHhhhhhhhhcccccccccccC
Q 014646            5 LVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNA   73 (421)
Q Consensus         5 ~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~   73 (421)
                      ++.-|+.|.+.||    +||+| .++++.+..++.+.++-.+++      ....++.-.+.+++.......-.++..|+.
T Consensus        62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT  141 (467)
T COG2211          62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT  141 (467)
T ss_pred             HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence            3456888999996    67655 578888888888888877763      344566778889999999988999999998


Q ss_pred             C-CCCchhHHHHHHhHHHHHhHHHHHHHHHhhc-------ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCccccc
Q 014646           74 P-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK  145 (421)
Q Consensus        74 ~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  145 (421)
                      + ++||.+..++-+.+.++|..+...+...+..       ..||+..-.+.++++.+..+.+++-..|...+..+.++. 
T Consensus       142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~-  220 (467)
T COG2211         142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG-  220 (467)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc-
Confidence            6 6789999999999999997776666555442       458999999998888888888877765533211111100 


Q ss_pred             chhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014646          146 AQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY  225 (421)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  225 (421)
                                                                 ...+..+.+..+++|+.+...++..++.....+....
T Consensus       221 -------------------------------------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s  257 (467)
T COG2211         221 -------------------------------------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGS  257 (467)
T ss_pred             -------------------------------------------ccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhh
Confidence                                                       0011123456778999999988888887777777777


Q ss_pred             HhhhHHHHhhccchhhHHHH-hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc--hhHHHHH
Q 014646          226 WGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLA  302 (421)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  302 (421)
                      ....|.+...+.++...... .....+.+++.++..++.+|+|+|     +....+.++..+..+...+.+  +....++
T Consensus       258 ~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~  332 (467)
T COG2211         258 IMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIGLLLLAVGYLLLYFTPAGSVVLIVV  332 (467)
T ss_pred             hhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence            77777777666665444333 344455566688999999999999     777777777777666655554  4555555


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCc-------chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKP-------SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ..++.+.+.+...+..+++++|.+.-       +.-|...|.++.+.- +|..++..+.|++.+..|
T Consensus       333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K-~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK-LGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHcC
Confidence            55677777777777777777775432       245666777744444 488888888899888765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=142.04  Aligned_cols=312  Identities=14%  Similarity=0.110  Sum_probs=209.7

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc------hhH--HHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF------DFW--SIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +....+++-|+.||+|-|...+++.++..+|+.+-..+.      .++  ....+..+.+.++-.....-..+-.-|+++
T Consensus        92 ~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~  171 (480)
T KOG2563|consen   92 SVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP  171 (480)
T ss_pred             HHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence            445667788999999999999999999999999876653      345  667888999988887777667788889999


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcc------cchhH--HHHHhHHHHHHHHHHHHhcccccccccCCcccccch
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------LNWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  147 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------~gwr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  147 (421)
                      +||..+..+-..+..+|.++|.++...+..+      ..|..  .|+..+.+..+..++..+..++.++.  ++......
T Consensus       172 ~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~  249 (480)
T KOG2563|consen  172 DQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA  249 (480)
T ss_pred             chhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh
Confidence            9999999999999999999999998888753      24654  35544444444444444444432222  11111110


Q ss_pred             hhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014646          148 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  227 (421)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (421)
                                                              .+..++.++.+..++|+++....+.+......+++..+.+
T Consensus       250 ----------------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l  289 (480)
T KOG2563|consen  250 ----------------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLL  289 (480)
T ss_pred             ----------------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHh
Confidence                                                    0011235678899999999998888877777777777766


Q ss_pred             hhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHH-HHHHHh---hchhHHHHHH
Q 014646          228 PKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFC---LSSLYGFLAL  303 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~  303 (421)
                      ...+...+-.+........+..+++++++++.|.+.||.++-+    ............. +.+...   ....+.+...
T Consensus       290 ~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk----~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t  365 (480)
T KOG2563|consen  290 NLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK----LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT  365 (480)
T ss_pred             hhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHhhccCCceEehhhh
Confidence            6444332222222334556677889999999999999987642    2222222222222 111111   2233444555


Q ss_pred             HHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ..+.+++.....|...-+..|..-|..-++..|+.+...+.++.. -.++.+...+..+
T Consensus       366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~-~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI-LVFIMGILAEDLG  423 (480)
T ss_pred             HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH-HHHHHHHHhhccC
Confidence            566677777778877888888877877788888888877776644 3556666666554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.77  E-value=1.7e-16  Score=139.71  Aligned_cols=374  Identities=11%  Similarity=0.086  Sum_probs=210.9

Q ss_pred             chhhHHHhhhhhc-CchHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHhhhhhhhhcccccccccccCCCC--Cchh
Q 014646            6 VASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP--QKTA   80 (421)
Q Consensus         6 ~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~   80 (421)
                      +..+++|+++||+ |+|+++..|.++.++|.++.+.++  +...++++-.+.++|.|..-+...++++|.+|++  +|-.
T Consensus        76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~  155 (498)
T COG3104          76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG  155 (498)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence            3567899999995 999999999999999999999984  7889999999999999999999999999999864  4777


Q ss_pred             HHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccC
Q 014646           81 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASN  160 (421)
Q Consensus        81 ~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (421)
                      .+++++.+.++|+.++|++.+++.+++||+..|.+.++-.....+..+.. ++.......++++...............-
T Consensus       156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (498)
T COG3104         156 GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG-RRHVKGIGGVPDPNPLSFNFLLPVLGGLV  234 (498)
T ss_pred             CccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-cchhcCCCCCCCccchhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999887665554444433 43332222111111111000000000000


Q ss_pred             CC--ccc-cccchhhhhhhhhcccccchhhhhhhhhh------hhhHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 014646          161 LN--DHV-SEDISDQASERSIKSIGESRFLNQLSQFS------QDTKVLLQ-EKVYVVNVLGYIAYNFVIGAYSYWGPKA  230 (421)
Q Consensus       161 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (421)
                      ..  ... ......+..........-........+..      +..++++. -+.+....+.+.++......+..|....
T Consensus       235 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~  314 (498)
T COG3104         235 VMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN  314 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence            00  000 00000000000000000000000000000      00111100 0111111222222222233333333333


Q ss_pred             HHHh-hccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccc--cc-hhhHHHHHHHHHHHHHHHHHh----h-----chh
Q 014646          231 GYNI-YHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI--SN-AFKLLSAATFLGAISCLTAFC----L-----SSL  297 (421)
Q Consensus       231 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~----~-----~~~  297 (421)
                      .++. ++.+.....+.++..+.-++.+++..++..|.+++.  ++ ..+.-....+.+...+++...    .     .+.
T Consensus       315 v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~  394 (498)
T COG3104         315 VNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSV  394 (498)
T ss_pred             hcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCH
Confidence            3333 334444455666667777777777778877755442  22 223333333333333322222    1     145


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHH------hhhhhhchhhhhhHH
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV------LQDHVNNWRKTTLAL  371 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~------l~~~~~~~~~~~~~~  371 (421)
                      +..+....+..++.-+..+.....+.+..|+...+..++.. ...+..|..++..+.+.      ..+.. .....|..+
T Consensus       395 ~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w-fLt~a~~~~l~g~va~~~~~~~~~~~~~-~~~~~F~~~  472 (498)
T COG3104         395 WWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW-FLTVAAGQTLGGQVAGLTAVTDPAYTAF-IEGRVFGTI  472 (498)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH-HHHHHHHHHhhceecccccccchhhhhh-hhhhhHHHH
Confidence            56666777778888788888899999999999999999987 44444465555544442      22222 233456655


Q ss_pred             HHHHHHHHHHh
Q 014646          372 TSIFFLAAGIW  382 (421)
Q Consensus       372 ~~~~~~~~~~~  382 (421)
                      +...+......
T Consensus       473 g~v~i~~~~~~  483 (498)
T COG3104         473 GVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHHHHH
Confidence            55554444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.72  E-value=1.7e-14  Score=124.82  Aligned_cols=305  Identities=14%  Similarity=0.056  Sum_probs=203.9

Q ss_pred             hhhHHHhhhhhcC-----chHH-HHHHHHHHHHHHhhhccc-----c-------h--hH--HHHHHHHHhhhhhhhhccc
Q 014646            7 ASPIFASLAKSHN-----PFRL-IGVGLSVWTFATAGCGSS-----F-------D--FW--SIAICRMLVGVGEASFISL   64 (421)
Q Consensus         7 ~~~~~g~l~dr~G-----rr~~-l~~~~~~~~~~~~~~~~~-----~-------~--~~--~l~~~r~l~G~~~~~~~~~   64 (421)
                      ..+.+|+.+|+.+     ||.. +..|.++...+..+..++     .       +  .+  ...+.-.+.|+|.+...+.
T Consensus        30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~  109 (403)
T PF03209_consen   30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTS  109 (403)
T ss_pred             HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHH
Confidence            4678999999998     7765 455566655555554432     2       1  22  2344567789999999999


Q ss_pred             ccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHh---HHHHHHHHHHHHhcccccccccCCc
Q 014646           65 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGE---AILMLPFAVLAFVIKPLQLKGFAPA  141 (421)
Q Consensus        65 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~---~~~~~~~~~~~~~~~p~~~~~~~~~  141 (421)
                      ..+++.|..|+++|+++.++.....-+|.+++..+.+.+.+.++-.-..-+.   +++.+...++..+- .|.+.....+
T Consensus       110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~  188 (403)
T PF03209_consen  110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWG-QEPRRSRRAA  188 (403)
T ss_pred             HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccccc
Confidence            9999999999999999999999999999999999999888766533222222   22222222222222 2211110000


Q ss_pred             ccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHH
Q 014646          142 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  221 (421)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  221 (421)
                      .++                                           ++...+.+.++++..+|.........+.....++
T Consensus       189 ~~~-------------------------------------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~  225 (403)
T PF03209_consen  189 AAE-------------------------------------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF  225 (403)
T ss_pred             CCC-------------------------------------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            000                                           0011223456677788888887777777777777


Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHh-hcccccchhhHHHHHHHHHHHH---HHHHHhhch
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAATFLGAIS---CLTAFCLSS  296 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  296 (421)
                      .-...+-.|.-+.++.+..+. .+......+..++....+++..| .+++     +.....+..+..+   ........+
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-----~~a~~G~~~~~~~f~lii~a~~~~~  300 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-----RTAALGCLLGALAFALIILAGPLGS  300 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            777788889999999996544 66677778888888888888774 3333     3333333333332   233334457


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          297 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+.+.....+.|++.+.......+.+.+...+++.|..+|.-. ..+..+..++..+.|.+.|..
T Consensus       301 ~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WG-aaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  301 PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWG-AAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888899888888888888999998899999999984 444447777787888887754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.69  E-value=3e-15  Score=135.40  Aligned_cols=314  Identities=13%  Similarity=0.112  Sum_probs=210.5

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhh--hhhhcccccccccccCCCCCchhH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG--EASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ..+.++..|.++||+|||..+.+..+...+..++..+.. +|.+ +   +.|+.  .+.......++++|....++|...
T Consensus        75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~  149 (463)
T KOG2816|consen   75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSS  149 (463)
T ss_pred             HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHH
Confidence            456788999999999999999999999888888777766 3333 3   55543  345677788999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.......+..++|.+++.+....|.-.+|.+..+..++..+..++..||+......++ ....       +......
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~-------~~~~~~~  221 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLR-------ELTPGSL  221 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-cccc-------ccCCCcc
Confidence            9999999999999999999999999999999999999988888888888898765432221 0000       0000000


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHH-HHHHHHhhhHHHHhhccchh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVI-GAYSYWGPKAGYNIYHMSNA  240 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  240 (421)
                             ..                 ....+..+..+..-.+|..+.+.+..+...... ....-..+.|+...+++++.
T Consensus       222 -------~~-----------------~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~  277 (463)
T KOG2816|consen  222 -------DS-----------------SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKK  277 (463)
T ss_pred             -------cc-----------------hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHH
Confidence                   00                 000011111111112344444343333333322 22221446778888888876


Q ss_pred             hHH-HHhhHhHHHHHHHhHHH-HHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          241 DMM-FGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       241 ~~~-~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      ... +.+.......++.++.. .+...++.+     +.+..+...-........+..+.|....... .........+..
T Consensus       278 ~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v-~~~~~~~~~pa~  351 (463)
T KOG2816|consen  278 EFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFAAGV-VVALAGIVFPAI  351 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhHHHH-HHHhhcchhHHH
Confidence            653 45556666667766655 677778877     6555555555555566666666665444433 334445666777


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+.....+.++.+|++.++....... ...++|.+.+.+...+
T Consensus       352 ~s~~s~~v~~~e~g~v~~~is~i~~l-~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  352 RAFASILVSPEEQGKVFGIISGIEGL-SGVVSPALYGNIFALT  393 (463)
T ss_pred             HhHHHhhcccccccchhhHHHHHHHH-hhhhhHHHHHHHHHHH
Confidence            88888889999999999999655555 7788898888886554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=1.9e-16  Score=122.18  Aligned_cols=132  Identities=30%  Similarity=0.386  Sum_probs=120.7

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++..+++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+....++.|.+|+++|++.
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            45677889999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      +++.+....+|..+++.+++.+.+..+|++.+++.++..++..+..++..||
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999998999999999988877777776666554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.63  E-value=2.8e-13  Score=118.75  Aligned_cols=327  Identities=11%  Similarity=0.005  Sum_probs=214.0

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +....++...+.|..|.|++++++.+...+...+.-+.++...+-+..+.-|++.+. ..+-++++-...|+++-.++.+
T Consensus        54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts  132 (412)
T PF01770_consen   54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTS  132 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHH
Confidence            456678889999999999999999999999999999999999999999999999985 6677889999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           84 MFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ...++..+|..++.++|..+..  ..+.+..+++......+..++.+++ |..++..--+++.+....   ..+.+.++.
T Consensus       133 ~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL-P~~~~S~~f~r~~~~~~~---~~~~~~~~~  208 (412)
T PF01770_consen  133 YTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL-PMPKRSLFFHRKPPAEQD---ANESESDKM  208 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCcccceeccCccccc---ccccccccc
Confidence            9999999999999999998875  4456666666655444444444444 442221100010000000   000000000


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                      ++..++.    .+.++.+...+.......+..++++++..++|.++...+-+.+...+++.+.+|.....++....+...
T Consensus       209 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~  284 (412)
T PF01770_consen  209 NESPESS----SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNES  284 (412)
T ss_pred             ccccccc----cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence            0000000    011111111122222455667788888899999999999888888888888888877776661111111


Q ss_pred             ---HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          242 ---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                         ...-+...+.+.++.+..|++-.++.+..   ...+....++.+..++++...++.|...+...+.........+..
T Consensus       285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~---~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWG---ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHhhcchHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22334555666677777787744443321   133445555566666677777888888877777777766666666


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHH
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSI  342 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~  342 (421)
                      ..-++.....+.-+...|++++..
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHHH
Confidence            666777776777777777774433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.56  E-value=1.5e-13  Score=125.36  Aligned_cols=318  Identities=13%  Similarity=0.085  Sum_probs=186.3

Q ss_pred             hhhHHHhhhhhc-----CchHHHHHHHHHHHHHHhhhccc----chhHHHHHHHHHhhhhhhhhcccccccccccCC--C
Q 014646            7 ASPIFASLAKSH-----NPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP--V   75 (421)
Q Consensus         7 ~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~   75 (421)
                      .-+++|.++|-+     .||+-++++.++..++.+..+..    .+.....+.-++..+|.+.....+-+++.|...  +
T Consensus        40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p  119 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREP  119 (433)
T ss_pred             HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence            347899999986     35556777777776655555543    356666777788889999999999999999874  3


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++||...+.......+|.+++..++|.+.+..++|..|.+.+++..+..+..+++.+|. +.++..+.....        
T Consensus       120 ~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~-~~~~~~~~~~~~--------  190 (433)
T PF03092_consen  120 ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER-KVRPADEVFSFG--------  190 (433)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc-cccccchhhccc--------
Confidence            44788889999999999999999999999999999999999888777776666665551 111000000000        


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHH-HHHHHHHHHHHHHHHhhhHHHHh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAGYNI  234 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (421)
                                 ++..+             ......++.....++.++.+.++...+ ..++............-.+..+.
T Consensus       191 -----------~~~~~-------------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~  246 (433)
T PF03092_consen  191 -----------KEEVP-------------CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDA  246 (433)
T ss_pred             -----------ccccc-------------hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecc
Confidence                       00000             000112233345566677777776555 22222221111000000011122


Q ss_pred             hc---cchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-h---------hchhHHHH
Q 014646          235 YH---MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-C---------LSSLYGFL  301 (421)
Q Consensus       235 ~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~  301 (421)
                      .+   +++  ..++.+. +.+.++.+++..+-+++.++... |+++....++.....+.-. .         .++.+..+
T Consensus       247 ~~gp~fs~--~f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~-R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~l  322 (433)
T PF03092_consen  247 LGGPHFSP--SFYGTLS-IVGSIASLLGILLYRKYFSNWSW-RRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFAL  322 (433)
T ss_pred             ccccccCH--HHHHHHH-HHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEE
Confidence            22   332  2222222 33444445555555555443221 2444444443333322111 0         11222233


Q ss_pred             HHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      .-..+........+.|....+.+..|+..-|+..++.....+. |..++..+...+.+..+
T Consensus       323 gd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nl-g~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  323 GDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNL-GSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC
Confidence            3344455556666777888899999999999999999777676 87888877777776655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.50  E-value=8.9e-14  Score=127.21  Aligned_cols=131  Identities=17%  Similarity=0.253  Sum_probs=113.6

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc----hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      .+++.++.|+++||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+....++.|++|+++|+
T Consensus       264 ~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g  343 (418)
T TIGR00889       264 EIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA  343 (418)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            456678999999999999999999999988876666532    3466778999999999988888899999999999999


Q ss_pred             hHHHHHH-hHHHHHhHHHHHHHHHhhcc------cchhHHHHHhHHHHHHHHHHHHhccccc
Q 014646           80 AWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        80 ~~~~~~~-~~~~~G~~~g~~~~~~l~~~------~gwr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      +++++.+ ...++|.++||.++|.+.++      +||+..|++.+++.++..++.+++.||+
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999997 67889999999999999886      4699999999999888888888877764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=5.6e-14  Score=134.62  Aligned_cols=132  Identities=10%  Similarity=-0.015  Sum_probs=114.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      ++.+++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|++|.++|+++
T Consensus       606 l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta  685 (742)
T TIGR01299       606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATA  685 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            35577899999999999999999999999999999999999888888899999998888899999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccc
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      +|+.+....+|.+++|.+++.+.+. +...+|++.+++.++.+++.++ +||+.
T Consensus       686 ~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       686 FGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            9999999999999999999988764 4567888887777666555554 47743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.48  E-value=2.7e-12  Score=116.82  Aligned_cols=169  Identities=9%  Similarity=0.009  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++.+.+..++...+......++|.|+++.++.+..+. ...+...+..+++.+..|+++||+|||     +.+..+.+
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----~~~~~~~~   81 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK-----RYMLLAIT   81 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhHHHHHH
Confidence            446666677788888888888999999998888887555 334566778888999999999999998     66666666


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ...+..+.....++.+..++...+.+...+...+....+..|..|+++|+++.|+.+...+. |..++|.+.+.+.+ . 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l-g~~igp~l~~~l~~-~-  158 (395)
T PRK10054         82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI-GWTVGPPLGTLLVM-Q-  158 (395)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-h-
Confidence            56555555555666655555444555555555566777888999999999999999777776 88999999998875 3 


Q ss_pred             chhhhhhHHHHHHHHHHH
Q 014646          363 NWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~  380 (421)
                      +++..|...+++.++..+
T Consensus       159 g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054        159 SINLPFWLAAICSAFPLV  176 (395)
T ss_pred             ccCcHHHHHHHHHHHHHH
Confidence            477788776665555433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.47  E-value=1.2e-12  Score=117.09  Aligned_cols=336  Identities=14%  Similarity=0.156  Sum_probs=194.1

Q ss_pred             ccccchhhHHHhhhhhcCc-hHHHHHHHHHHHHHHhhh-cc---cc-hhHHHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            2 VGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      +|.+++++..|+...|.+. |+.++.+.++..++.++. ++   .+ ..+.++++|++.|+|.+ ......+|+++....
T Consensus        82 lg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen   82 LGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTV  160 (488)
T ss_pred             HHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCc
Confidence            4678899999999999986 888899999999999988 33   23 67889999999999988 455778999999888


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcc----------c---chhHHHHHhHHHHHHHHHHHHhcccccccccCCcc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------L---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  142 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----------~---gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  142 (421)
                      ++|.|+++....+..+|.++||.+...+..-          .   -+-.+-|+.+++.++..+...+...|..+...+.+
T Consensus       161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~  240 (488)
T KOG2325|consen  161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKK  240 (488)
T ss_pred             cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccc
Confidence            8999999999999999999999887665421          1   13355677777777777777777666544321111


Q ss_pred             cccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhh-hchhhHHHHHHHHHHHHHHHH
Q 014646          143 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL-LQEKVYVVNVLGYIAYNFVIG  221 (421)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~  221 (421)
                      .++..                       +++.+..                  ..+.. +.....+...+..+...+...
T Consensus       241 ~~~~~-----------------------~~~~~~~------------------~~~~~~~d~~~~~vc~~~~~~~~~~~~  279 (488)
T KOG2325|consen  241 KRSVE-----------------------EEKSDIE------------------KVKKPKLDWVAVLVCIFLRFVVNFIAT  279 (488)
T ss_pred             cccch-----------------------hhccchh------------------hhccCChhHHHHHHHHHHHHHHHHHHH
Confidence            11000                       0000000                  00000 111222333334455555555


Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHH-hhHhHHHHHHHh-HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh---hc
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGTI-SGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC---LS  295 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  295 (421)
                      ...+..+.+....++++.... ... ....+.+++... ...+..-|+++.-.+ ..+...+........+....   ..
T Consensus       280 ~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r-~~~~~g~l~~f~~~~i~~yp~~~~s  358 (488)
T KOG2325|consen  280 TIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR-RIILLGFLIFFLSYYIFTYPWGFYS  358 (488)
T ss_pred             HHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc-eeeeehHHHHHHhhheeeeeccccc
Confidence            555666666666677664333 222 223333333222 333333443331100 02222222222222111110   00


Q ss_pred             ---------------------------hhHHHHHH-HHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhcc
Q 014646          296 ---------------------------SLYGFLAL-FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD  347 (421)
Q Consensus       296 ---------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  347 (421)
                                                 +.+.+++. ..+.+...-.......+..++...|+++++..+++. ..+..+.
T Consensus       359 ~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~-~~~s~~~  437 (488)
T KOG2325|consen  359 GPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFS-ISGSIAR  437 (488)
T ss_pred             cccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEE-eccchhh
Confidence                                       01111111 111222222334457888899999999999999995 4444488


Q ss_pred             CCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          348 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       348 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .++|.+...+....| +++.+.+.....++...++
T Consensus       438 ~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  438 VVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             hhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence            889888877777766 6566665555544444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.46  E-value=4.9e-13  Score=125.25  Aligned_cols=136  Identities=10%  Similarity=0.003  Sum_probs=100.8

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhh---hcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      ++..++.++.|+++||+|||+++..+.++..++...   ...+++...+++++++.|++.+........++.|.+|++.|
T Consensus       297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~R  376 (490)
T PRK10642        297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIR  376 (490)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence            456678889999999999999988887654433322   22345677788899999988777777777888999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhccc-chhHHHHHhHHHHHHHHHHHHhccccccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  138 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  138 (421)
                      ++++++......++..++|.+.+++.+.. +|+.+++...+++++..+..+ +.||++++.
T Consensus       377 g~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~~  436 (490)
T PRK10642        377 YSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANRP  436 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCCC
Confidence            99999754445566678888888887654 478777777666665555544 448887664

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.46  E-value=6.7e-12  Score=115.84  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.+....+.+++.......+..+.|.+.++ .+.+..+. .......++..++.++.|++.||+|+|     +.+..+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR-----YFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc-----hhHHHHHH
Confidence            334444555555555555667778887766 67775554 445677788899999999999999998     77777777


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..++....++.+...+...+.+++.+...+....++.+.+|+++|++++++.+...+. |..++|.+.+++.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV-GGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            76666666666666666666666677777777788888999999999999999999766665 88999999999998766


Q ss_pred             chhhhhhHHHHHHHHH
Q 014646          363 NWRKTTLALTSIFFLA  378 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~  378 (421)
                       |+..+...++..++.
T Consensus       176 -w~~~f~~~~i~~~~~  190 (434)
T PRK11663        176 -WRYGMMIAGIIAIVV  190 (434)
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             888887766554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.44  E-value=5.2e-13  Score=122.14  Aligned_cols=129  Identities=17%  Similarity=0.168  Sum_probs=114.5

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|.+|+++|++++
T Consensus       261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~  340 (399)
T PRK05122        261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAAL  340 (399)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            45678899999999999999999999988888888888888888888999999999988888888888999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcc
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      ++++....+|..+++.+.+.+.+..||++.|++.+++.++..++.++..
T Consensus       341 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        341 GAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999989999999999888777666655543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.43  E-value=2.7e-12  Score=115.93  Aligned_cols=164  Identities=8%  Similarity=-0.043  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ....++...........+|.|..+....+.......+...++..++.++.|+++||+|||     +.+..+..+......
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK-----KVMIGADLIRAVLVA   79 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh-----HHHHHHHHHHHHHHH
Confidence            344455555666666777888777443333333455677788899999999999999998     776666555554444


Q ss_pred             HHHhhc-----hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch
Q 014646          290 TAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       290 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  364 (421)
                      ......     +.+...+...+.+++.+...+....++.|..|+++|++++++.+..... |.+++|.+.+.+.+..+ |
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g-~  157 (365)
T TIGR00900        80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL-FYIVGPGIGGLMYATLG-I  157 (365)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhh-H
Confidence            433333     6666677777778888888888899999999999999999999766665 88999999999988766 7


Q ss_pred             hhhhhHHHHHHHHHHH
Q 014646          365 RKTTLALTSIFFLAAG  380 (421)
Q Consensus       365 ~~~~~~~~~~~~~~~~  380 (421)
                      +..+++.+...++...
T Consensus       158 ~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900       158 KWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777766555444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.42  E-value=7.6e-12  Score=112.43  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          211 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      +..++............|.++.+.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+..+..+..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~   77 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR-----RVLIIGLLLFALGSL   77 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eeEeehhhhhhhHHH
Confidence            33455555566666677756666677665554 445677788899999999999999998     777666666666644


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhh
Q 014646          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  369 (421)
                      ...+.++.+..++..++.+++.+...+....++.+.+|+++|++++++.+..... |..++|.+.+.+.+..+ |+..++
T Consensus        78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~~-~~~~~~  155 (352)
T PF07690_consen   78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSL-GSILGPLLGGFLISYFG-WRWAFL  155 (352)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHCH-HCCHHH
T ss_pred             HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhh-hhhcccchhhhhhhccc-cccccc
Confidence            4333366667777778888888888888999999999999999999999766665 88999999999997765 878888


Q ss_pred             HHHHHHHHHHHH
Q 014646          370 ALTSIFFLAAGI  381 (421)
Q Consensus       370 ~~~~~~~~~~~~  381 (421)
                      +.+...++..++
T Consensus       156 ~~~~~~~~~~il  167 (352)
T PF07690_consen  156 ISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cccchhhhhhhh
Confidence            887776666553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.41  E-value=9.3e-12  Score=115.65  Aligned_cols=172  Identities=11%  Similarity=-0.052  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh--hccchhhH-HHHhhHhHHHHHHHhHHHHHHHh-hcccccchhhHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSA  279 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~  279 (421)
                      +.++.+.+..++..+.+++...++|.|+++.  .|.+..+. .......+...++.+++|+++|| +|||     +.+..
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~-----~~l~~   84 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK-----KTMVL   84 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH-----HHHHH
Confidence            4455556666777888899999999999887  67776444 44466778889999999999999 8998     77777


Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcc---hhHHHHHHHHHHHHHhccCCchhHHHH
Q 014646          280 ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                      +..+..+..++....++.+...+...+.+.+.+...+.......+.+|++   .|+++.++.+...+. |..+||.+.++
T Consensus        85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni-G~~ig~~l~g~  163 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI-GSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH-HHHHHHHHHHH
Confidence            77777666666555555555555556667777777777888888888775   488899998777777 99999999999


Q ss_pred             hhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          357 LQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       357 l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +.++.+ |+..|...+...+++.+.+
T Consensus       164 l~~~~g-~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       164 IAENYG-YHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHHHH
Confidence            998766 8788877765555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=6.6e-12  Score=108.55  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=144.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHH
Q 014646          202 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  280 (421)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  280 (421)
                      |.+.+..+.+.+..+++.-..+..-.|...++ .+.+..+. .+.+...+..-++-++.|.++||.+.|     ..+...
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr-----~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR-----YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-----eeehHH
Confidence            44556666777777777777777777766555 55776555 455788899999999999999999998     888888


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHH--HHhh
Q 014646          281 TFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV--GVLQ  358 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--g~l~  358 (421)
                      .+++++..+++.+.++.+.+.++..+.+.+.+..+|++...+.+-+++++||+..++-|+..+. |+.+.|++.  +++.
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNi-GGal~~~~~~la~~~  179 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNI-GGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhc-ccchHHHHHHHHHHH
Confidence            8888888888888889999999999999999999999999999999999999999999988888 778788888  8888


Q ss_pred             hhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          359 DHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++. +|+..|++-+++.++..++.+
T Consensus       180 ~~~-~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         180 FHG-GWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             hcc-chhHHHHHHHHHHHHHHHHHH
Confidence            775 598999998887766665544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.40  E-value=8.6e-12  Score=114.72  Aligned_cols=179  Identities=15%  Similarity=0.029  Sum_probs=122.3

Q ss_pred             hhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchh
Q 014646          195 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAF  274 (421)
Q Consensus       195 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  274 (421)
                      .+++.+.++|.++...+..++............|.+.++..+.............++..++.++.|+++||++||     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----   82 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRK-----   82 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc-----
Confidence            345556678888887777777777777777888888877554333333555677788899999999999999998     


Q ss_pred             hHHHHHHHHHHHHHHHH-----HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCC
Q 014646          275 KLLSAATFLGAISCLTA-----FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                      +.+.....+..+.....     ...++.+...+...+.+++.+...++....+.+.+|+++|+++.++.+...+. |..+
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~  161 (417)
T PRK10489         83 KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRL-GSVI  161 (417)
T ss_pred             eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhH-HHHh
Confidence            44433333322222211     11234444555555566666666677788888999999999999998655555 8899


Q ss_pred             chhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          350 SSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       350 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      ||.+.+.+.+..+ +++.+++.+...++..+
T Consensus       162 g~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~  191 (417)
T PRK10489        162 SPALGGLLIAAGG-VAWNYGLAAAGTFITLL  191 (417)
T ss_pred             HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999988755 66677665555444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.40  E-value=1.8e-11  Score=112.09  Aligned_cols=174  Identities=13%  Similarity=0.011  Sum_probs=122.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhh-cccccchhhHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAA  280 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~  280 (421)
                      .+.++..........+.++++..++|.|+.+..+.++... ...........++.+++|+++||+ |||     +.+..+
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr-----r~iliG   82 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR-----MAVMLG   82 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHH
Confidence            3445555666677788889999999999998888886555 344555677788899999999999 998     666666


Q ss_pred             HHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhccccchhhhhhcccCcc--hhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          281 TFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .++..+..+++...+ +.........+...+.+...+...++..|.+|++  .|.++.++.+...+. |+.++|.+.+++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl-G~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV-GSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH-HHHHHHHHHHHH
Confidence            655555544333222 1122232333333444555566678889999875  799999999888886 889999999999


Q ss_pred             hhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          358 QDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+..| |+..|...++.++++.+.++
T Consensus       162 ~~~~G-w~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        162 QEEYS-WAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HhhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            88766 88888877665555554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.38  E-value=1.2e-12  Score=120.21  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=114.7

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+..|+++|++.++
T Consensus       271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  350 (408)
T PRK09874        271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFS  350 (408)
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeeh
Confidence            44667788999999999999999998888888888888888889999999999999999988889999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcc
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      +.+....+|..+||.+++.+.+..||++.|++.+++.++..+..++..
T Consensus       351 ~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        351 YNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887777666543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.38  E-value=3.7e-11  Score=102.69  Aligned_cols=215  Identities=13%  Similarity=0.116  Sum_probs=135.1

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhccccccc-ccccCCC----CC
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF-IDDNAPV----PQ   77 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~~~----~~   77 (421)
                      ..++..++.|.++||+|||+.-++-+++.+++++ +-.+++++.++++|++.|++.+....+-.++ +.|+-..    +.
T Consensus        81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~  159 (354)
T PF05631_consen   81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW  159 (354)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            4567788999999999999999999999999886 4566899999999999999999888877765 4555322    22


Q ss_pred             chhHHHHHH-hHHHHHhHHHHHHHHHhhcccch--hHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccc
Q 014646           78 KTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        78 r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      .+..++... ..+++-.+.+.+++..+.+..+.  ..+|.....+.++..++.....+|....   +++.+         
T Consensus       160 L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~---------  227 (354)
T PF05631_consen  160 LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSS---------  227 (354)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---ccccc---------
Confidence            233333333 22333445566666666665544  7888888777666666555443443211   01100         


Q ss_pred             cccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHH-HHhhhHHHH
Q 014646          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS-YWGPKAGYN  233 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  233 (421)
                                                       +..++..+.++.+.++|+++.+.+...++-...+.+. .|.|..-.+
T Consensus       228 ---------------------------------~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~  274 (354)
T PF05631_consen  228 ---------------------------------SLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD  274 (354)
T ss_pred             ---------------------------------chHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC
Confidence                                             0011122346677888999988888877766665554 577765511


Q ss_pred             hhccchhhHHHHhhHhHHHHHHHhHHHHHHHh
Q 014646          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQ  265 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  265 (421)
                       ...-|....+ +...++.++|+.+..++..+
T Consensus       275 -~~~~P~GlIF-ssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  275 -DEELPLGLIF-SSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             -CCCCCchHHH-HHHHHHHHHHHHHHHHHHhC
Confidence             1111222222 34456666777666555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.38  E-value=8e-13  Score=121.60  Aligned_cols=129  Identities=9%  Similarity=0.055  Sum_probs=113.2

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.|.+|++.|+...
T Consensus       274 ~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~  353 (420)
T PRK09528        274 LEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIY  353 (420)
T ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeee
Confidence            34578899999999999999999999999999899999999999999999999999888888888999999999888876


Q ss_pred             HH-HHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcc
Q 014646           83 SM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        83 ~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      +. ++....+|.++++.+.|++.+..||+..|.+.+++.++..++.++..
T Consensus       354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence            55 67778899999999999999999999999999888777666665554

>PRK12382 putative transporter; Provisional

Probab=99.38  E-value=1.3e-12  Score=119.24  Aligned_cols=128  Identities=12%  Similarity=0.109  Sum_probs=115.1

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..+++++.|++.||+|+|+.+..+..+.+++.++..++++.+.+++..++.|++.+...+.....+.|.+|+++|++++
T Consensus       261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  340 (392)
T PRK12382        261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTAL  340 (392)
T ss_pred             HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHH
Confidence            45678899999999999999999999999998888888888888888999999999988888888889999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++++....+|..++|.+.+.+.++.||+..|.+.+++.++..++.++.
T Consensus       341 g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        341 GGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999998877766665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.37  E-value=3.7e-11  Score=109.60  Aligned_cols=165  Identities=14%  Similarity=0.057  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHH
Q 014646          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      +......++.....+....++|.|+++..+.+.....+ .....+...+..++.|+++||++||     +.+..+..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k-----~~l~~~~~~~~   87 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK-----PMIVTGMLMRA   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch-----HHHHHHHHHHH
Confidence            33445566777777788888999988888888655533 3555667777789999999999998     77777777777


Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchh
Q 014646          286 ISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWR  365 (421)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~  365 (421)
                      +..+.....++.+...+...+.+++.+...++..+.+.+.+|+++|++++|+.+...+. |..+||.+.+++. ..+ |+
T Consensus        88 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~g~l~-~~g-~~  164 (400)
T PRK11646         88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSA-GAVIGALLGSWLL-QYD-FR  164 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh-HH
Confidence            77666666667766666666677776666677788889999999999999999766666 8899999999998 444 77


Q ss_pred             hhhhHHHHHHHHHH
Q 014646          366 KTTLALTSIFFLAA  379 (421)
Q Consensus       366 ~~~~~~~~~~~~~~  379 (421)
                      ..+++.+...++..
T Consensus       165 ~~f~~~~~~~~~~~  178 (400)
T PRK11646        165 LVCATGAVLFVLAA  178 (400)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777665544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.36  E-value=3.7e-11  Score=111.09  Aligned_cols=172  Identities=17%  Similarity=0.139  Sum_probs=112.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHH
Q 014646          202 QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  280 (421)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  280 (421)
                      +++.++...+.+.........+....|.+ ++. +.++.+. .......++..++.++.|+++||+|||     +.+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~-----~~~~~~   97 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYL-VEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR-----VFLPAG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHH-HHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc-----eehHHH
Confidence            34444444444444444444455556644 443 7776555 444677788899999999999999998     555555


Q ss_pred             HHHHHHHHHHHHhh----chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHH
Q 014646          281 TFLGAISCLTAFCL----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       281 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                      .++..+..+.....    .+.+...+...+.+++.+..+++....+.+.+|+++|++++++.+..... |..+++.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~l~~~  176 (438)
T TIGR00712        98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNI-GGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHh-HhHHHHHHHHH
Confidence            44444444333222    23334444555666777777777788888999999999999999766666 77778877776


Q ss_pred             hhhhhhchhhhhhHHHHHHHHHHHH
Q 014646          357 LQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       357 l~~~~~~~~~~~~~~~~~~~~~~~~  381 (421)
                      ..+...+|+..|+..+...++..+.
T Consensus       177 ~~~~~~~w~~~f~~~~~~~~i~~~~  201 (438)
T TIGR00712       177 GMAWFNDWHAALYFPAICAIIVALF  201 (438)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            5554445888888877665554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=1.5e-11  Score=112.42  Aligned_cols=153  Identities=17%  Similarity=0.157  Sum_probs=114.8

Q ss_pred             HHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHH
Q 014646          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  299 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      ..+....|. +.+.++.+.... .......++..++.++.|++.||+|||     +.+..+..+..+........++.+.
T Consensus        11 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~   84 (399)
T TIGR00893        11 ANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR-----KTLAVFIVIWGVFTGLQAFAGAYVS   84 (399)
T ss_pred             HhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcc-----eeeHHHHHHHHHHHHHHHHHcCHHH
Confidence            344444555 455567765444 445777888899999999999999998     6666666666655555555667777


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      ..+...+.+++.+...+....++.|.+|+++|++++++.+...+. |..++|.+.+.+.+..+ |+..+...+...++..
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL-GGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHH
Confidence            777888888888888888899999999999999999999766555 88999999998888766 7777777666554444


Q ss_pred             HH
Q 014646          380 GI  381 (421)
Q Consensus       380 ~~  381 (421)
                      +.
T Consensus       163 ~~  164 (399)
T TIGR00893       163 VL  164 (399)
T ss_pred             HH
Confidence            43

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=4e-11  Score=109.99  Aligned_cols=163  Identities=11%  Similarity=0.096  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.+....+.++.............|.+. +.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~   85 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR-----LPMVTSIV   85 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHH
Confidence            3344445555555555556666666554 5577775554 445677788899999999999999998     77766666


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..+.....++.+..++...+.+.+.+...+....++.|..|+++|+++.++.+..... |.++++.+.+.+.+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV-GAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            66666666656667777777777888888888888888999999999999999999665555 88889988888887654


Q ss_pred             -chhhhhhHHHH
Q 014646          363 -NWRKTTLALTS  373 (421)
Q Consensus       363 -~~~~~~~~~~~  373 (421)
                       +|+..+.+.+.
T Consensus       165 ~~w~~~f~~~~~  176 (405)
T TIGR00891       165 DGWRALFFISIL  176 (405)
T ss_pred             ccHHHHHHHHHH
Confidence             36666655433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.34  E-value=4.1e-11  Score=109.73  Aligned_cols=167  Identities=10%  Similarity=0.038  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +....+.+.+............| .+++.++.+..+. ...+...++..++.+..|++.||+|||     +.+....++.
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r-----~~~~~~~~~~   83 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR-----RWIAGIMVLW   83 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH-----HHHHHHHHHH
Confidence            33344444444444444555555 5666778876555 445777788899999999999999999     7777777776


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh----
Q 014646          285 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH----  360 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~----  360 (421)
                      .+..+.....++.+.+.+.-.+.+++.+...+....++.+.+|+++|++++++.+..... |..+++.+.+++.+.    
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV-TMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCC
Confidence            666666666677777777777788888877777777888989999999999999766665 888999898888752    


Q ss_pred             -hhchhhhhhHHHHHHHHHH
Q 014646          361 -VNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       361 -~~~~~~~~~~~~~~~~~~~  379 (421)
                       ..+|+..|++.+...++..
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~  182 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILG  182 (412)
T ss_pred             CccchhHHHHHHHHHHHHHH
Confidence             1248888887665544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.34  E-value=8.3e-11  Score=110.09  Aligned_cols=169  Identities=14%  Similarity=0.099  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++...+..++.....+.+..+.|.+.++ .+.++... .......++..++.++.|+++||+|||     +.+.....
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR-----NIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHH
Confidence            456666777777777777888889998876 66775444 344556677788999999999999998     66665555


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +.....+.....++.+.+++..++.+++.+...+.....+.+.+|+++|+++.++.+...+. |..++|.+.|.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQV-GPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhhcc
Confidence            55554444445566666677777788887777777888889999999999999999766665 88999999999999765


Q ss_pred             chhhhhhHHHHHHHHHHH
Q 014646          363 NWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~  380 (421)
                       |+..|.+......+...
T Consensus       163 -w~~~f~~~~~~~~l~~~  179 (471)
T PRK10504        163 -WHWIFLINIPVGIIGAI  179 (471)
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             77777776655444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.33  E-value=1.7e-11  Score=111.38  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Q 014646          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (421)
                      ++.......+....|. +.+.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~   78 (379)
T TIGR00881         5 AAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR-----VFLPIGLILCAIVNLFFG   78 (379)
T ss_pred             hHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe-----ehhHHHHHHHHHHHHHHH
Confidence            3444455555666665 445567775444 445777888899999999999999999     777777766666666666


Q ss_pred             hhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchh-HHHHhhhhhhchhhhhhHH
Q 014646          293 CLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP-LVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-~~g~l~~~~~~~~~~~~~~  371 (421)
                      ..++.+..++...+.+++.+...+....++.+.+|+++|+++.++.+..... |..++|. +.+.+.+.. +|+..+++.
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (379)
T TIGR00881        79 FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV-GGGLLPPLVLFGIAELY-SWHWVFIVP  156 (379)
T ss_pred             HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh-HHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence            6677777777777788888888888899999999999999999999666555 8888884 555555543 476777666


Q ss_pred             HHHHHHHH
Q 014646          372 TSIFFLAA  379 (421)
Q Consensus       372 ~~~~~~~~  379 (421)
                      +.+.++..
T Consensus       157 ~~~~~~~~  164 (379)
T TIGR00881       157 GIIAIIVS  164 (379)
T ss_pred             HHHHHHHH
Confidence            65544433

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=1.5e-10  Score=105.59  Aligned_cols=170  Identities=9%  Similarity=0.022  Sum_probs=121.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +..+...+.+++.......+...+|.+.+ .++.+..+. ...+...++..++.++.|++.||+|||     +.+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r-----~~~~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK-----RQLIFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHH
Confidence            33444445555555555566667777654 467775554 444667788899999999999999998     77776666


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..++....++.+...+...+.+++.+...+.....+.+.+|+++|+.+.+..+..... |+.++|.+.+.+.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM-AGMIFPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccc
Confidence            66666655555667766666777777777777777788888999888999999988655555 77788888888776544


Q ss_pred             chhhhhhHHHHHHHHHHH
Q 014646          363 NWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~  380 (421)
                      +|+..+...+...++..+
T Consensus       160 gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        160 EWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            588888776665544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.33  E-value=8.1e-11  Score=109.45  Aligned_cols=174  Identities=13%  Similarity=0.010  Sum_probs=125.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHh-hcccccchhhHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKLLSAA  280 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~  280 (421)
                      .+.++..+...+...+.+++...+++.|+++..+.+.... ...........+..+++|+++|| +|||     +.+..+
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r-----~~~~~g   87 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK-----RTIVLG   87 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH-----HHHHHH
Confidence            3456666666777888899999999999999888886544 33344444555667799999999 9999     777777


Q ss_pred             HHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHhccccchhhhhhcccCcc--hhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          281 TFLGAISCLTAFCLSS-LYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       281 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .++..+..+......+ .....+...+.+.+.+...+....++.+.+|++  +|+.+.++.+...+. |..++|.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ni-g~~~g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINI-GSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHH-HHHHHHHHHHHH
Confidence            7766666555544433 222334556667777777888889999999886  457788888777777 889999999999


Q ss_pred             hhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          358 QDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .++.| |++.|++..+....+.+.+.
T Consensus       167 ~~~~g-w~~~F~i~~i~~~~~~~~~~  191 (489)
T PRK10207        167 ADKFG-YSVTYNLCGAGLIIALLVYF  191 (489)
T ss_pred             HHhhC-hHHHHHHHHHHHHHHHHHHH
Confidence            99876 88888776554444443333

>TIGR00895 2A0115 benzoate transport

Probab=99.33  E-value=1.6e-11  Score=112.30  Aligned_cols=154  Identities=14%  Similarity=0.164  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh
Q 014646          216 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  294 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ..........+.|.+.++ ++.++... .......++..++.++.|+++||+|||     +.+..+..+..+..+.....
T Consensus        29 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~  102 (398)
T TIGR00895        29 DGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK-----RVLLWSILLFSVFTLLCALA  102 (398)
T ss_pred             HHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHc
Confidence            333344455556665544 66665444 444666788899999999999999998     77766666666666555556


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      ++.+...+...+.+++.+...+....+..+.+|+++|++++++.+..... |..+++.+.+++.+..+ |+..+.+.+..
T Consensus       103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g-~~~~~~~~~~~  180 (398)
T TIGR00895       103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI-GAAVGGFLAGWLIPVFG-WRSLFYVGGIA  180 (398)
T ss_pred             cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH-HHHHHHHHHHHHhhccc-ceeehhhhhhH
Confidence            67776777777777777778888899999999999999999999655555 88999999999988765 76777766444


Q ss_pred             HHH
Q 014646          375 FFL  377 (421)
Q Consensus       375 ~~~  377 (421)
                      ..+
T Consensus       181 ~~~  183 (398)
T TIGR00895       181 PLL  183 (398)
T ss_pred             HHH
Confidence            333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.32  E-value=6.9e-11  Score=107.65  Aligned_cols=157  Identities=15%  Similarity=0.067  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc
Q 014646          217 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      ...........|.+.++ .+.++.+. .......++..++.++.|++.||+|||     +.+..+..+..+..+.....+
T Consensus        18 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----~~~~~~~~~~~~~~~~~~~~~   91 (385)
T TIGR00710        18 PLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR-----PVLLLGLFIFALSSLGLALSN   91 (385)
T ss_pred             HHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHc
Confidence            33444444455655444 66665444 445677788899999999999999998     777777766666666666667


Q ss_pred             hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHH
Q 014646          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIF  375 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~  375 (421)
                      +.+...+..++.+++.+...+....++.|.+|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..+++.+...
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-~~~~~~~~~~~~  169 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLAL-APAVAPLLGGYILVWLS-WHAIFAFLSLAG  169 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence            7777777777777777777788888999999999999999999766665 88899999999888765 777777666554


Q ss_pred             HHHHHH
Q 014646          376 FLAAGI  381 (421)
Q Consensus       376 ~~~~~~  381 (421)
                      ++....
T Consensus       170 ~~~~~~  175 (385)
T TIGR00710       170 ILLSAL  175 (385)
T ss_pred             HHHHHH
Confidence            444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=1.1e-10  Score=102.11  Aligned_cols=172  Identities=16%  Similarity=0.094  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      ...+.+.++.|+.....+...-.+|...+| ++.++... ...+.+.++..++.++...+.||+.||     +++.....
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr-----~lLl~~l~   86 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR-----RLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH-----HHHHHHHH
Confidence            345555666677777777777888888777 56665444 556888899999999999999999999     99999999


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..++....++.+..++.=.+.++..+..++....+..+.+|+++|++++++.+..... +.++|.++..++-|.+|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl-A~v~GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL-ATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH-HHHHhccHHHHHHHHhh
Confidence            99999999998999999999989999999999999999999999999999999999655555 88999999999999988


Q ss_pred             chhhhhhHHHHHHHHHHHHhh
Q 014646          363 NWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~  383 (421)
                       |+.+|+..+.+.++..+...
T Consensus       166 -WR~~F~~ia~l~ll~~~~~~  185 (394)
T COG2814         166 -WRATFLAIAVLALLALLLLW  185 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             99999988877666555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.32  E-value=1.3e-10  Score=108.79  Aligned_cols=176  Identities=11%  Similarity=-0.043  Sum_probs=121.3

Q ss_pred             hhchh-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHh-hcccccchhhH
Q 014646          200 LLQEK-VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  276 (421)
Q Consensus       200 l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  276 (421)
                      .+++| .++......++..+.++++..+++.|+++..|.+.... ..............+++|+++|| +|||     +.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----~~   90 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----RV   90 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----HH
Confidence            34555 47777777788888889999999999999898886544 22222333333445689999999 5998     77


Q ss_pred             HHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhccccchhhhhhcccCcc--hhHHHHHHHHHHHHHhccCCchhH
Q 014646          277 LSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      +..+..+..+...+....+ +.+...+...+.+.+.+...+....+..+.+|++  .+..+.++.+...+. |..++|.+
T Consensus        91 ~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i-G~~~gp~i  169 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI-GSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH-HHHHHHHH
Confidence            7666666555544444432 3333444445566666666777778888888764  355678887677777 88999999


Q ss_pred             HHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          354 VGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       354 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .|++.++.| |+..|...++...++.+.+
T Consensus       170 ~g~l~~~~g-~~~~F~i~~i~~~i~~i~~  197 (500)
T PRK09584        170 TPWLAAKYG-WSVAFALSVVGMLITVVNF  197 (500)
T ss_pred             HHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence            999999876 8888887765555544333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.31  E-value=1.3e-10  Score=105.02  Aligned_cols=147  Identities=17%  Similarity=0.091  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      ++...+..+........+..+.|.++++.++.++... .......++..++.++.|+++||+|||     +.+....++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~   77 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR-----YTTTLSLLLL   77 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            4555566666666677778888877888888887655 445677888999999999999999998     7777666666


Q ss_pred             HHHHHHHHhhc-hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          285 AISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       285 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+..+.....+ +.+...+...+.+++.+ ...+...++.+.+|+++|+++.++.....+. |..+++.+.+.+.+
T Consensus        78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~  151 (366)
T TIGR00886        78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNM-GGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            66666655556 66666666666665543 4456677888999999999999998655444 66667666666554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.31  E-value=1e-10  Score=106.45  Aligned_cols=157  Identities=11%  Similarity=-0.031  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh-HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      |.++.+.+..++............+...++ .+.++.. ........+...+..++.|+++||++||     +++..+..
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr-----~vl~~~~~   76 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG-----RVMFIANG   76 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc-----hhhHHHHH
Confidence            456666666666666555555555555544 4444333 3445667788899999999999999999     77766666


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..+......+.   ++..++.+.+.+...+...+++.|.+|+++|++++|+.+..... +.++||.+.|.+.+.. 
T Consensus        77 ~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~-~~~~Gp~lgG~l~~~~-  151 (393)
T PRK11195         77 IKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIA-AILLGTVLGGALADPH-  151 (393)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
Confidence            555444433333332   33445677788888888899999999999999999999655554 8899999999999853 


Q ss_pred             chhhhhhHHH
Q 014646          363 NWRKTTLALT  372 (421)
Q Consensus       363 ~~~~~~~~~~  372 (421)
                       +...+.+.+
T Consensus       152 -~~~~~~i~~  160 (393)
T PRK11195        152 -AEAALAVCA  160 (393)
T ss_pred             -HHHHHHHHH
Confidence             434444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.29  E-value=1.4e-10  Score=105.93  Aligned_cols=161  Identities=15%  Similarity=0.064  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Q 014646          213 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  291 (421)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (421)
                      ......+.......+|.+.++ .+.+.... ...+...++..++.++.|+++||+|||     +.+..+.....+.....
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~i~~~~~   85 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK-----PVAIPGAALFIIASLLC   85 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh-----HHHHHHHHHHHHHHHHH
Confidence            344444455555667776665 56665444 444666778888999999999999998     77766666666666555


Q ss_pred             HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHH
Q 014646          292 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  371 (421)
                      ...++.+...+...+.+.+.+...+....++.+.+|+++|+++.++.+..... +..++|.+.+.+.+..+ |+..+++.
T Consensus        86 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         86 SLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCI-IPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            55566665555566666666666677788889999999999999999766555 77888988888777654 76777776


Q ss_pred             HHHHHHHHHH
Q 014646          372 TSIFFLAAGI  381 (421)
Q Consensus       372 ~~~~~~~~~~  381 (421)
                      +...++...+
T Consensus       164 ~~~~~i~~~~  173 (392)
T PRK10473        164 AAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHH
Confidence            6554444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.29  E-value=1.6e-10  Score=104.95  Aligned_cols=168  Identities=15%  Similarity=0.021  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      +.++...+..+............+|.+.++ ++.+..+. ...+...++..++.++.|++.||+|||     +.+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK-----HILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH-----HHHHHHHH
Confidence            344555555666666666666777776554 66665444 455777889999999999999999998     77777777


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          283 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +..+..++....++.+.+++.-.+.+++.+...+.......+..++++|+++++........ |..++|.+.+++.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTV-ANLLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHH-HHHHhccHHHHHhhhcc
Confidence            77777777777778887777777788777766666677778888888999999998655444 88889989998888765


Q ss_pred             chhhhhhHHHHHHHHHH
Q 014646          363 NWRKTTLALTSIFFLAA  379 (421)
Q Consensus       363 ~~~~~~~~~~~~~~~~~  379 (421)
                       |+..+...+...++..
T Consensus       156 -wr~~f~~~~~~~~~~~  171 (382)
T PRK10091        156 -WRYTFLLIAVFNIAVL  171 (382)
T ss_pred             -HHHHHHHHHHHHHHHH
Confidence             8888887766544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=1.4e-10  Score=105.71  Aligned_cols=148  Identities=13%  Similarity=0.055  Sum_probs=111.5

Q ss_pred             HHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 014646          225 YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  303 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (421)
                      ...|.+. +.++.++.+. .......++..++.+..|++.||+|||     +.+..+..+..+..+.....++.+.+.+.
T Consensus        30 ~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (390)
T PRK03545         30 GLLSDIA-QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR-----KLLIGLFVLFIASHVLSALAWNFTVLLIS  103 (390)
T ss_pred             cchHHHH-hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3456554 4577776554 444666677788889999999999999     88877777777776666667777777777


Q ss_pred             HHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      -.+.+.+.+...+....++.+..|+++|++++|+.+..... |..++|++.+.+.+..| |+..++..+...++...
T Consensus       104 r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~-g~~ig~~l~~~l~~~~g-w~~~f~~~~~~~~l~~~  178 (390)
T PRK03545        104 RIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL-AMVLGLPLGRVIGQYLG-WRTTFLAIGGGALITLL  178 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH-HHHHHhhHHHHHHHHhc-HHHHHHHHHHHHHHHHH
Confidence            66677766666677788889999999999999999655555 88999999998888765 88888877766544443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.29  E-value=2.3e-10  Score=104.17  Aligned_cols=145  Identities=14%  Similarity=0.054  Sum_probs=112.1

Q ss_pred             HHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014646          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      ...+|.+.+ .++.++.+. ...+...++..++.++.|++.||+|||     +.+.....+..+..+.....++.+.+++
T Consensus        40 ~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (394)
T PRK10213         40 VSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR-----YVVILFAVLLTLSCLLVSFANSFSLLLI  113 (394)
T ss_pred             HhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH-----HHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence            334666554 467776554 444667788889999999999999999     7777777777766666666677777777


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHH
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  376 (421)
                      .-.+.+++.+...+....++.+.+|+++|+++.++.....+. |..++|.+.+.+.+..+ |+..|++.+...+
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-g~~ig~~l~~~l~~~~g-w~~~f~~~~~l~~  185 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSI-ALVIAAPLGSFLGELIG-WRNVFNAAAVMGV  185 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcC-HHHHHHHHHHHHH
Confidence            777888888877888888899999999999999999666555 88999999999998876 8777777655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.29  E-value=2.4e-10  Score=107.24  Aligned_cols=167  Identities=15%  Similarity=0.120  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh-HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +....+..+....-...+..-+|.+..+ ++.+..+ ......+.++...+.+..|+++||+|||     +.+..+..+.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----~~l~~~~~~~   81 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK-----RLLMLGGTLF   81 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHH
Confidence            3444455555555566677778888765 5555433 3455667778888889999999999999     8888777777


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhccc-CcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc
Q 014646          285 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV-KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  363 (421)
                      .+..+.....++.+.+++.-.+.+++.+...+.....+.+.+ |+++|++++|+....... |..+||.+.+++.++.+ 
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~-g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG-GAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCC-
Confidence            777777777778887777777778777776666666666665 568999999999655555 99999999999999866 


Q ss_pred             hhhhhhHHHHHHHHHHH
Q 014646          364 WRKTTLALTSIFFLAAG  380 (421)
Q Consensus       364 ~~~~~~~~~~~~~~~~~  380 (421)
                      |++.|++...+.++...
T Consensus       160 wr~~f~i~~~~~~~~~~  176 (495)
T PRK14995        160 WGSVFLINVPIVLVVMG  176 (495)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            88888776655444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.28  E-value=1.5e-10  Score=108.83  Aligned_cols=164  Identities=14%  Similarity=0.093  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 014646          209 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  287 (421)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  287 (421)
                      ..+..+.............|.+.++ ++.+.... .......++..++.++.|++.||+|||     +.+..+..+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR-----RLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH-----HHHHHHHHHHHHH
Confidence            3344444455555666677777665 56554333 555777888999999999999999998     7777777777777


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhh
Q 014646          288 CLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKT  367 (421)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~  367 (421)
                      .+.....++.+..++..++.+++.+...+....++.+.+|+++|+++.++.+..... |..++|.+.+++.++.+ |++.
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~-w~~~  158 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLV-APALGPTLGGWIIENYH-WRWI  158 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HhhhhhccHhHhccCcC-ceeh
Confidence            666666777777777778888888877888889999999999999999999655555 88999999999998765 7777


Q ss_pred             hhHHHHHHHHHHH
Q 014646          368 TLALTSIFFLAAG  380 (421)
Q Consensus       368 ~~~~~~~~~~~~~  380 (421)
                      +++.....++...
T Consensus       159 f~~~~~~~~~~~~  171 (485)
T TIGR00711       159 FLINVPIGIIVVV  171 (485)
T ss_pred             hhhhhHHHHHHHH
Confidence            7776655444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.27  E-value=2.5e-10  Score=105.51  Aligned_cols=159  Identities=12%  Similarity=0.072  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +....+.++.............|. +++..+.++.+. .......++..++.++.|+++||+|||     +.+..+....
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----~~l~~~~~~~   93 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK-----PLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHH
Confidence            333334444444444444444554 445567765444 445677788899999999999999999     7877777777


Q ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch
Q 014646          285 AISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  364 (421)
                      .+..+.....++.+.+.+.-.+.+++.+...+....++.+..|+++|+++.++.+..... |.++++.+.+.+.+..+ |
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~~~~~l~~~l~~~~~-w  171 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI-GNIIAAYFMPSFAEAYG-W  171 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH-HHHHHHHHHHHHcccCC-H
Confidence            776666666677777777777888887777888888899999999999999998655554 88888888888877655 7


Q ss_pred             hhhhhHHH
Q 014646          365 RKTTLALT  372 (421)
Q Consensus       365 ~~~~~~~~  372 (421)
                      +..+++..
T Consensus       172 ~~~f~i~~  179 (426)
T PRK12307        172 RAAFFVGL  179 (426)
T ss_pred             HHHHHHHH
Confidence            77776543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.27  E-value=9.9e-10  Score=96.73  Aligned_cols=309  Identities=14%  Similarity=0.035  Sum_probs=167.4

Q ss_pred             chhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHH
Q 014646            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      +.-+.+.++.+|+..+.=+....++..++.++.+++++.+.=+++-++.+++.|........+.. .+++    ...+-+
T Consensus        74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~w  148 (402)
T PF02487_consen   74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAW  148 (402)
T ss_pred             HHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccc
Confidence            34456777888887666567777788899999999999998888999999988877776666644 5554    357888


Q ss_pred             HhHHHHHhHHHHHHHHHhhcccc--hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCc
Q 014646           86 YMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLND  163 (421)
Q Consensus        86 ~~~~~~G~~~g~~~~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (421)
                      +.+.+.+.++|+..-..+.+ .+  -|..+++...+.++..+..++.+|..+......+.....       +    ..  
T Consensus       149 ssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~-------~----~~--  214 (402)
T PF02487_consen  149 SSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED-------E----AE--  214 (402)
T ss_pred             cCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC-------c----cc--
Confidence            88999888988887666655 44  477888887776666666666665422111100000000       0    00  


Q ss_pred             cccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch-hhH
Q 014646          164 HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADM  242 (421)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  242 (421)
                        ++...++.++++.+...+    ...++.++..+.++.  ....+.+.+++-+....++...+   .......++ ...
T Consensus       215 --~~~~~~~~~~~~~~~~~~----~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~~tl---~fp~~~~~~r~~Y  283 (402)
T PF02487_consen  215 --DDLLESETSESKPDSSSK----LSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVAPTL---LFPNSFFSPRDQY  283 (402)
T ss_pred             --ccccccccccccccccch----hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchHHHh---cCCccCCCHHHHH
Confidence              000000000000000000    111111122222221  23333444444444444433221   111111111 112


Q ss_pred             -HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH---HHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          243 -MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       243 -~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                       .+...+.++-.+++-....+  |+  |  +. +.+...-.+-.+.++   ...+.++.|...+.++.-|...|..+...
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r--~l-wils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--R--RL-WILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--h--hH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence             34455555555544332211  11  1  11 222111111111111   22234567777777778888888888888


Q ss_pred             hhhhhcccCcchhHHHHHHHHHHHHHhccCCchh
Q 014646          319 NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      ...+.++.++++|..++|... ....+|-.++..
T Consensus       357 F~~I~~~~~~~~REFslg~vs-vsds~GI~lAgl  389 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGAVS-VSDSLGILLAGL  389 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence            888999999999999999994 445546555553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.26  E-value=2.9e-10  Score=104.35  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 014646          212 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  290 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (421)
                      ..++............|.+.++ ++.++.+. .......++..++.++.|++.||+|||     +.+.....+..+..+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~   96 (406)
T PRK11551         23 VALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK-----RILIVSVALFGLFSLA   96 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHHHH
Confidence            3344444455555666766555 66675544 445677788899999999999999999     7776666655555555


Q ss_pred             HHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhH
Q 014646          291 AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA  370 (421)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  370 (421)
                      ....++.+...+..++.+++.+...+....++.|.+|+++|++++++.+..... |..+++.+.+.+.+..+ |+..+++
T Consensus        97 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~  174 (406)
T PRK11551         97 TAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF-GGALASVIGVLAAGDAA-WRHIFYV  174 (406)
T ss_pred             HHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccC-HHHHHHH
Confidence            555667777777777778877777777888899999999999999999766555 88888877777766544 6666766


Q ss_pred             HHHHHHHH
Q 014646          371 LTSIFFLA  378 (421)
Q Consensus       371 ~~~~~~~~  378 (421)
                      .+.+.++.
T Consensus       175 ~~~~~~~~  182 (406)
T PRK11551        175 GGVGPLLL  182 (406)
T ss_pred             HHHHHHHH
Confidence            55443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.25  E-value=3.1e-11  Score=110.00  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=103.2

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHH
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM   84 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~   84 (421)
                      .++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+++.+++.+...+....+..|..|+ +|++++++
T Consensus       266 i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~  344 (393)
T PRK15011        266 IPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTL  344 (393)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHH
Confidence            45678999999999999988887766666555555677888888899999888877777777788898886 49999999


Q ss_pred             HHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           85 FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        85 ~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++...++|..++|.+++.+.+++||+..|++.+++.++..+..++.
T Consensus       345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998999999998887776655555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.25  E-value=6.6e-09  Score=93.31  Aligned_cols=318  Identities=14%  Similarity=0.124  Sum_probs=174.1

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc------c--c-------hhHHHHHHHHHhhhhhh-hhcccccc
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------S--F-------DFWSIAICRMLVGVGEA-SFISLAAP   67 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~-------~~~~l~~~r~l~G~~~~-~~~~~~~~   67 (421)
                      .++.++..|.+.||..|.+++..+.+..-++..+++.      .  +       ....+++.-.+.|.-.- .......+
T Consensus        51 ~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ia  130 (432)
T PF06963_consen   51 AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIA  130 (432)
T ss_pred             HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            4567788899999999999987776554333322221      1  1       12222222223332221 22223344


Q ss_pred             cccccC------CCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccc---c
Q 014646           68 FIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG---F  138 (421)
Q Consensus        68 ~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~---~  138 (421)
                      .-.||.      +++.+.+.++...-.-.+..+++|++.|.+.+..+.+....+.++..++..++-+++.....+.   .
T Consensus       131 vERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L  210 (432)
T PF06963_consen  131 VERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPAL  210 (432)
T ss_pred             eccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHh
Confidence            455664      3445667777777777788999999999999988998888888877777666655554211111   1


Q ss_pred             CCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHH
Q 014646          139 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  218 (421)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  218 (421)
                      ..+++.+....          +.+    +.   +..++..+....+...+..+....+++..+++|.+...... .+.++
T Consensus       211 ~~~~~~~~~~~----------~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~al-alLY~  272 (432)
T PF06963_consen  211 AVKKRSSESES----------SSD----EE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFAL-ALLYF  272 (432)
T ss_pred             cCCCCCccccc----------ccc----cc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHH-HHHHH
Confidence            01111100000          000    00   00000000111111112333444567777788876664443 33334


Q ss_pred             HHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH---HHHHHHHHHHhh
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF---LGAISCLTAFCL  294 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  294 (421)
                      ..-++...+..|+.+. |.++... .+-....+.++.+.++..++.+|+|..     +.-..+..   .+...+....+.
T Consensus       273 TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv-----r~G~~~l~~q~~~L~~~v~~~~~  346 (432)
T PF06963_consen  273 TVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV-----RAGLWSLWWQWVCLALCVVSFWA  346 (432)
T ss_pred             HHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----hhHHHHHHHHHHHHHHHHHHHhc
Confidence            3444556667788776 6665444 334667788899999999999999976     33222222   122222222222


Q ss_pred             c-------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHh
Q 014646          295 S-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIF  345 (421)
Q Consensus       295 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (421)
                      +       +...++....+.-++.-+.-....-+++|.+|+++||..+|+.+...+.+
T Consensus       347 ~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf  404 (432)
T PF06963_consen  347 PGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF  404 (432)
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence            1       12223333333334444444556778889999999999999997777663

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.25  E-value=7.7e-10  Score=102.80  Aligned_cols=148  Identities=15%  Similarity=0.095  Sum_probs=97.8

Q ss_pred             HHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh----chh
Q 014646          223 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SSL  297 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  297 (421)
                      +....|. +.+. +.+..+. ...+...++..++.++.|+++||+|+|     +.+..+..+..+..+.....    .+.
T Consensus        48 ~~~~~p~-l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k-----~~l~~~~~~~~i~~~~~~~~~~~~~~~  120 (452)
T PRK11273         48 FALAMPY-LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSSI  120 (452)
T ss_pred             HHHhhHH-HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc-----hhHHHHHHHHHHHHHHHHhhhcccccH
Confidence            4455665 4454 7765554 444677788899999999999999999     77666665555554444332    244


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhcc-CCchhHHHHhhhhhhchhhhhhHHHHHHH
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD-VPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  376 (421)
                      +..++...+.+++.+...++....+.+.+|+++|++++|+.+..... |. ..+|.+...+.. ..+|+..+++.+...+
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~-~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGLPPLLFLLGMAW-FNDWHAALYMPAFAAI  198 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence            45555556677777777777777888888999999999998766666 54 445543322322 2357777777665544


Q ss_pred             HHH
Q 014646          377 LAA  379 (421)
Q Consensus       377 ~~~  379 (421)
                      +..
T Consensus       199 ~~~  201 (452)
T PRK11273        199 LVA  201 (452)
T ss_pred             HHH
Confidence            433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=9.4e-10  Score=102.67  Aligned_cols=153  Identities=14%  Similarity=0.101  Sum_probs=98.8

Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHH
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  300 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      ....+.|.+ .+.++.+..+. .......++..++.++.|+++||+|+|     +.+....+...+..++....++.+.+
T Consensus        54 ~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r-----~~~~~~~~~~~~~~~~~~~~~s~~~l  127 (476)
T PLN00028         54 AAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR-----YGSAFLLMLTAPAVFCMSLVSSATGF  127 (476)
T ss_pred             HHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            333444444 55577775554 334566677888999999999999998     66666665555555555555566655


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh--------hhchhhhhhHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH--------VNNWRKTTLALT  372 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~--------~~~~~~~~~~~~  372 (421)
                      ++..++.+++.+.. .+...++.+.+|+++|++++|+.+...+. |..+++.+.+.+.+.        ..+|+..|++.+
T Consensus       128 ~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~-g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g  205 (476)
T PLN00028        128 IAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNL-GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG  205 (476)
T ss_pred             HHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence            55555566555543 34455678889999999999998655555 666666555544321        124888888777


Q ss_pred             HHHHHHHHHh
Q 014646          373 SIFFLAAGIW  382 (421)
Q Consensus       373 ~~~~~~~~~~  382 (421)
                      ++.++..+..
T Consensus       206 ~l~l~~~l~~  215 (476)
T PLN00028        206 LLHIIMGILV  215 (476)
T ss_pred             HHHHHHHHHH
Confidence            6655444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=7.2e-10  Score=103.05  Aligned_cols=177  Identities=12%  Similarity=0.036  Sum_probs=128.6

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHH
Q 014646          199 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  278 (421)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  278 (421)
                      ..+|+|.|..+.++....+.+......-.+-+..+..+.+...........+..++.++++|.++||+.||     ++++
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drr-----rili   79 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRR-----RILI   79 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-----HHHH
Confidence            34688999998888888888877777666666666544332223444556677788899999999999999     7766


Q ss_pred             HHHHHHHHHHHH-----HHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhH
Q 014646          279 AATFLGAISCLT-----AFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       279 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      .+-++..+....     .....+.+.++++.++.+.+.....+...+.+.+.+|+++...++++.+...+. +.++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni-ar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI-ARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH-HHhccchH
Confidence            555444332221     112235667777778888888888899999999999999999999999777777 88999999


Q ss_pred             HHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          354 VGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       354 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +|.+....| ....|.+-+...+.....+
T Consensus       159 gG~Lva~~G-~~~~f~inalsfl~~i~~l  186 (524)
T PF05977_consen  159 GGILVAFFG-AAAAFLINALSFLISILAL  186 (524)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            999999877 4466666665555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11043 putative transporter; Provisional

Probab=99.25  E-value=4.6e-10  Score=102.78  Aligned_cols=157  Identities=16%  Similarity=0.074  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhhhH--HHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh
Q 014646          218 FVIGAYSYWGPKA--GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL  294 (421)
Q Consensus       218 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (421)
                      ..+.....+.|.+  +.+..+.++... ...++..++..++.++.|+++||++||     +.+..+..+..+..+.....
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK-----PVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc-----HHHHHHHHHHHHHHHHHHHh
Confidence            3333444455544  445567775554 445677888899999999999999999     77766666666555555555


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      ++.+...+...+.+++.+...+.......+.+++++++...+..+..... +..++|.+.+++.+..+ |+..++..+..
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~~~~~~~~  169 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVAL-SPALAPLLGAWLLNHFG-WQAIFATLFAI  169 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Confidence            66666665556666655555555567788889888888888888655554 77889999999988765 77777766655


Q ss_pred             HHHHHHH
Q 014646          375 FFLAAGI  381 (421)
Q Consensus       375 ~~~~~~~  381 (421)
                      .++..+.
T Consensus       170 ~~~~~~~  176 (401)
T PRK11043        170 TLLLILP  176 (401)
T ss_pred             HHHHHHH
Confidence            5444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=6.2e-09  Score=93.35  Aligned_cols=306  Identities=11%  Similarity=0.040  Sum_probs=172.6

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +.+.+++.+.+.|+.|.|+.+.++...+.......-+- |-+-+++...+.|+|.+..+..--.++.|+.+++.+.+..+
T Consensus        63 ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nis  141 (461)
T KOG3098|consen   63 FTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNIS  141 (461)
T ss_pred             HHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHH
Confidence            46788999999999999999999999998877766554 46667889999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcc--------cchh-HHH---HHhHHHHHHHHHHH-Hhcc--cccccccCCcccccchh
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSH--------LNWR-YAF---WGEAILMLPFAVLA-FVIK--PLQLKGFAPAESGKAQV  148 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~--------~gwr-~~f---~~~~~~~~~~~~~~-~~~~--p~~~~~~~~~~~~~~~~  148 (421)
                      +..+....+.++|..+-..+..+        .+-+ ..+   +..-.+-++..++. ...+  ......  +.+..... 
T Consensus       142 i~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~--p~~~~~~~-  218 (461)
T KOG3098|consen  142 IFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL--PSKDVVNC-  218 (461)
T ss_pred             HHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec--Cccchhhh-
Confidence            99988888888887655433211        1111 111   00000000000000 0000  000000  00000000 


Q ss_pred             hhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014646          149 VASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP  228 (421)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (421)
                                          .+..      +        ....+..+..-+++++|+...+....+..+..........|
T Consensus       219 --------------------~~~~------~--------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iyp  264 (461)
T KOG3098|consen  219 --------------------KSSS------E--------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYP  264 (461)
T ss_pred             --------------------hhhc------c--------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccc
Confidence                                0000      0        01112223344556677766666555444444444444444


Q ss_pred             hHHHHh--hccch--hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH-HHhhc--------
Q 014646          229 KAGYNI--YHMSN--ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT-AFCLS--------  295 (421)
Q Consensus       229 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------  295 (421)
                      ..+.-.  .+.+.  .........+++.+++.+..+.+.+|..+...+  ..+.....+....+++ ....+        
T Consensus       265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~--~~~~~~~~~~~~~~~li~l~~p~dap~~~t  342 (461)
T KOG3098|consen  265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK--PTVLIGIIIHLIGFLLIHLSFPNDAPLRPT  342 (461)
T ss_pred             hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence            433222  22222  112233445566666777777777665443221  3333333333333222 22111        


Q ss_pred             ---------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCch
Q 014646          296 ---------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                               +.....+...+.|+.........++++.... +++|.++.++.- +...+++.++-
T Consensus       343 ~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k-fyq~~~s~v~~  405 (461)
T KOG3098|consen  343 DSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFK-FYQSVASCVAF  405 (461)
T ss_pred             cccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHH-HHHHHHHHHHh
Confidence                     2335566667788888888888898988888 777888888874 44443554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.23  E-value=8.4e-10  Score=100.18  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=100.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      +|.++...+.........+......+.+-++.++.+..+. ...+++.+.+.+..+..|++.||+|.|     +....+.
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R-----~v~~~~~  107 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR-----RWTVFST  107 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHH
Confidence            4566665555554444454555555555554688887666 445778888889999999999999998     7776666


Q ss_pred             HHHHHHHHHHHhh-----chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHH
Q 014646          282 FLGAISCLTAFCL-----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       282 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~  356 (421)
                      ++..+..+.....     ++.+.+++.-++.+++ +..+++....+.+.+|+++||+++|+.....+. |..+++++.+.
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~-G~~l~~~l~p~  185 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL-GVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            6666555555443     5666666666677765 557777888888999999999999999533333 65555554444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.22  E-value=6.2e-10  Score=105.00  Aligned_cols=158  Identities=12%  Similarity=0.131  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHH
Q 014646          205 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL  283 (421)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  283 (421)
                      .+....+..+.............|.+. +.++.++... .......++..++.++.|++.||+|||     +.+..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR-----LAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHH
Confidence            334444444444555555555566554 5577775444 445667788889999999999999998     777777666


Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc
Q 014646          284 GAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  363 (421)
                      ..+..+.....++.+.+.+...+.+++.+...+....++.+.+|+++|++++++.+...+. |..++|.+.+.+.+..+ 
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI-GAVVAAQVYSLVVPVWG-  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCC-
Confidence            6666666666667777777777788877777788888899999999999999999665555 88999999999888755 


Q ss_pred             hhhhhhH
Q 014646          364 WRKTTLA  370 (421)
Q Consensus       364 ~~~~~~~  370 (421)
                      |+..+.+
T Consensus       173 w~~~f~~  179 (496)
T PRK03893        173 WRALFFI  179 (496)
T ss_pred             HHHHHHH
Confidence            7666654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.21  E-value=5.2e-10  Score=100.43  Aligned_cols=162  Identities=20%  Similarity=0.214  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 014646          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      ....+.............|.+.++. +.++... .......++..++.++.|++.||+|||     +.+..+.....+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r-----~~~~~~~~~~~~~~   78 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDL-GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR-----RVLLLGLLLFALGS   78 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc-----hhhHHHHHHHHHHH
Confidence            3445556666667777788887764 4554333 455777788899999999999999999     77777777776666


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhh
Q 014646          289 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  368 (421)
                      ......++.+...+...+.+.+.+...+....+..|..|+++|++++++.+..... |..++|.+.+.+.+..+ ++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~  156 (352)
T cd06174          79 LLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGL-GALLGPLLGGLLAESLG-WRWLF  156 (352)
T ss_pred             HHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhh-HHHHH
Confidence            66666677777777777788888888888899999999999999999999766655 88999999999988755 66666


Q ss_pred             hHHHHHHHHHH
Q 014646          369 LALTSIFFLAA  379 (421)
Q Consensus       369 ~~~~~~~~~~~  379 (421)
                      .+.+...++..
T Consensus       157 ~~~~~~~~~~~  167 (352)
T cd06174         157 LILAILGLLLA  167 (352)
T ss_pred             HHHHHHHHHHH
Confidence            66555544433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=8.3e-11  Score=102.91  Aligned_cols=154  Identities=11%  Similarity=0.116  Sum_probs=124.1

Q ss_pred             HHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 014646          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  310 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      ++.++.++... .+.....+...++++++|++.||++|+     .++..+..+-.+..+...+....|.+.+.=.+.|.+
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~-----~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK-----RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIG  134 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc-----eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34455554433 556777888999999999999999999     666666665555555555557788888888889999


Q ss_pred             HhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhheeeec
Q 014646          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGIFLKS  390 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (421)
                      .+...+..+++++|.+|.++|++++++.+..... |..+|-+....+.+..+.|++++...+++.++..++.++....|+
T Consensus       135 eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv-GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  135 EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV-GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhhhcccchhHhhhcCcchhhhHHHHHhhhhccc-ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            9999999999999999999999999999988887 888888888888888888999999999888887777766655555


Q ss_pred             c
Q 014646          391 I  391 (421)
Q Consensus       391 ~  391 (421)
                      |
T Consensus       214 r  214 (493)
T KOG1330|consen  214 R  214 (493)
T ss_pred             c
Confidence            4

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.19  E-value=1e-09  Score=99.63  Aligned_cols=164  Identities=15%  Similarity=0.018  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHH-HHHHHHHHHHH
Q 014646          211 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLL-SAATFLGAISC  288 (421)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~-~~~~~~~~~~~  288 (421)
                      +.+++...........+|.|+++..+.+.... ...+...+...+..++.|+++||+|||     +.+ ...........
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~   78 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDR-----KGLILFCCLLAALAC   78 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHH
Confidence            34566666777777888888888888876554 334566677888889999999999987     543 33444444444


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHH--HHHHHHHHHHhccCCchhHHHHhhhhhhchhh
Q 014646          289 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALS--MAISTVSIHIFGDVPSSPLVGVLQDHVNNWRK  366 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  366 (421)
                      +.....++.+..++...+.+.+.+...+....+..+..|++.|+.+  .+..+...+. |..++|.+.+.+.+..+ |+.
T Consensus        79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ig~~~~~~l~~~~~-~~~  156 (375)
T TIGR00899        79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISL-AWVIGPPLAFWLALGFG-FTV  156 (375)
T ss_pred             HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhH-HHHHhhhHHHHHHHhcc-cHH
Confidence            4444455555444444444444444555555666666666656544  4665444444 88999999999988765 878


Q ss_pred             hhhHHHHHHHHHHHH
Q 014646          367 TTLALTSIFFLAAGI  381 (421)
Q Consensus       367 ~~~~~~~~~~~~~~~  381 (421)
                      .+++.+...++..+.
T Consensus       157 ~f~~~~~~~~~~~~~  171 (375)
T TIGR00899       157 MFLTAALAFVLCGVL  171 (375)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888776655444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.19  E-value=1e-09  Score=100.34  Aligned_cols=153  Identities=10%  Similarity=-0.024  Sum_probs=103.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.+....+..++..........+.|.+.++ .+.++.+. .......++..++.++.|++.||+|||     +.+..+.
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k-----~~l~~~~   85 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL-----KTMMIGL   85 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----HHHHHHH
Confidence            3455555666666666666666778888865 56665444 445677788899999999999999998     7666655


Q ss_pred             HHHHHHHHHHH---h-hchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhcc-CCchhHHHH
Q 014646          282 FLGAISCLTAF---C-LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGD-VPSSPLVGV  356 (421)
Q Consensus       282 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~-~~~~~~~g~  356 (421)
                      .+..+..+...   . ..+.+...+...+.+.+.+...+.......+.+|+++|++++|+.+...+. |. ..+|.+.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~~g~~~~~~  164 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSI-GIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence            55544433221   1 234444444555555555544555566677888999999999999766655 64 568888888


Q ss_pred             hhhhhh
Q 014646          357 LQDHVN  362 (421)
Q Consensus       357 l~~~~~  362 (421)
                      +.+..|
T Consensus       165 l~~~~g  170 (402)
T TIGR00897       165 AIPAFG  170 (402)
T ss_pred             cccccc
Confidence            888765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.19  E-value=1.3e-09  Score=99.54  Aligned_cols=153  Identities=11%  Similarity=0.033  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch
Q 014646          218 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  296 (421)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (421)
                      .........+|.+.+ ..+.++... .......++..++.++.|+++||+|||     +.+........+..+.....++
T Consensus        22 ~~~~~~~p~~~~i~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~   95 (394)
T PRK11652         22 MAQTIYVPAIADMAR-DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR-----PVILVGMSIFILGTLVALFAHS   95 (394)
T ss_pred             HHHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh-----HHHHHHHHHHHHHHHHHHHHcc
Confidence            333334444555554 466665444 445677788899999999999999998     7666666665555555555566


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHH
Q 014646          297 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  376 (421)
                      .+...+...+.+++.+...+.......+.+++++++.+.+..+..... +..++|.+.+.+.+..+ |+..+.+.+...+
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~g-~~~~f~~~~~~~~  173 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILV-SPLLAPLIGGLLTTLFG-WRACYLFLLLLGA  173 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            666666666666665555555566677778888999999998655544 77889989998888765 7777777655444


Q ss_pred             HH
Q 014646          377 LA  378 (421)
Q Consensus       377 ~~  378 (421)
                      +.
T Consensus       174 ~~  175 (394)
T PRK11652        174 GV  175 (394)
T ss_pred             HH
Confidence            33

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.18  E-value=6e-10  Score=101.09  Aligned_cols=154  Identities=13%  Similarity=0.144  Sum_probs=105.9

Q ss_pred             HHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhH
Q 014646          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  298 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (421)
                      .+....+.|.+. +.++.+..+. ...+...++..++.+..|+++||+|||     +.+..+..+..+..+.....++.+
T Consensus        19 ~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r-----~~~~~~~~~~~~~~~~~~~~~~~~   92 (377)
T TIGR00890        19 VYTWTLLAPPLG-RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR-----AVAMLGGILYGLGFTFYAIADSLA   92 (377)
T ss_pred             HhhhhhHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc-----chhHHhHHHHHHHHHHHHHHHHHH
Confidence            344445556544 4567776554 445777889999999999999999999     777666666666666666667777


Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHH
Q 014646          299 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLA  378 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  378 (421)
                      .+.+...+.+++.+..++.......+.+| ++|+++.++.+..... |..+++++.+.+.+..+ |+..+...++..++.
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGL-GSFILSPLITSVINLEG-VPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcch-hHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            77766667777776666556666666664 6799999998655444 76666666666666544 777777776655554


Q ss_pred             HHHh
Q 014646          379 AGIW  382 (421)
Q Consensus       379 ~~~~  382 (421)
                      ....
T Consensus       170 ~~~~  173 (377)
T TIGR00890       170 IVLG  173 (377)
T ss_pred             HHHH
Confidence            4433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.18  E-value=6.6e-10  Score=100.90  Aligned_cols=150  Identities=16%  Similarity=0.150  Sum_probs=112.6

Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHH
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGF  300 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (421)
                      .....+|.+.++ ++.++.+. ...+...++..++.++.|++.||+|||     +.+..+..+..+........++.+..
T Consensus         9 ~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          9 MYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK-----PVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh-----HHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            344556666665 66665444 445677788899999999999999998     77777776666666666666677777


Q ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          301 LALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      .+...+.+++.+...+....++.+..|+++|+++.++.+..... |..++|.+.+.+.+..+ |+..++..+...++..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  159 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTI-APLLAPIIGGWLLVWFS-WHAIFWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHH
Confidence            77777777777777777888899999999999999999766555 88899999999988765 7677766655544443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.18  E-value=1e-09  Score=98.51  Aligned_cols=154  Identities=10%  Similarity=-0.024  Sum_probs=104.9

Q ss_pred             HHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchh
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  297 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (421)
                      ....+...+|.+.++ ++.+..+. ...+...++..++.+..|++.||+|||     +.+.................++.
T Consensus         6 ~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr-----~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR-----WFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHHHHHHHhccH
Confidence            334455556666554 67776554 445667788899999999999999987     55544443333332222222456


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHH
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFL  377 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  377 (421)
                      ...++.-.+.+.+.+. ..+......+.+|+++|++++++.+..... |..+++.+.+++.+..| |+..|+..+.+.++
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~l-G~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~  156 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYL-GIIFALAAGLKIYTAGG-LQLLIIPIAAVAAA  156 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc-hHHHHHHHHHHHHH
Confidence            6666666666766654 344555668889999999999999655555 99999989898888765 88888876666555


Q ss_pred             HHHH
Q 014646          378 AAGI  381 (421)
Q Consensus       378 ~~~~  381 (421)
                      ..++
T Consensus       157 ~~~~  160 (368)
T TIGR00903       157 GIIL  160 (368)
T ss_pred             HHHH
Confidence            4443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.18  E-value=1.2e-09  Score=99.20  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=115.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.++......+...........++|.+.++ .+.+..+. ...+...++..++.++.|+++||+|||     +.+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k-----~~~~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN-----RSYYLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHH
Confidence            3446666777777777788888899999886 46665444 445777888899999999999999998     7776666


Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          282 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      .+...........++.+.+.+...+.+++.+...+.....+.+..++++|+++++..+...+. |..++|.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYL-GTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccc
Confidence            666666655555677777777777777777766666666777888889999999998666555 888999888888765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.17  E-value=1.1e-10  Score=109.50  Aligned_cols=132  Identities=8%  Similarity=-0.073  Sum_probs=102.9

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc-----cc------hhHHHHHHHHHhhhhhhhhcccccccccc
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      +..++.++.|+++||+|||+.+.++.++.+++.++.++     .+      +...+....++.+.......+....++.|
T Consensus       331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (481)
T TIGR00879       331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE  410 (481)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhc
Confidence            45678899999999999999999998888777766652     11      23333333333333333345666778899


Q ss_pred             cCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhccccc
Q 014646           72 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        72 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      .+|+++|++++++.....++|.+++|.+.+.+.++.+|++.|++.++++++..++.+++.||.
T Consensus       411 ~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            999999999999999999999999999999999888999999999988888777777666653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.17  E-value=1.1e-09  Score=101.58  Aligned_cols=151  Identities=12%  Similarity=0.131  Sum_probs=101.1

Q ss_pred             HHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014646          223 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  301 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (421)
                      +..+.|.+.+ .++.+.... .......+...++.++.|+++||++||     +.+..+.++..+..+.....++.+...
T Consensus        38 ~~~~~~~i~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~l~  111 (455)
T TIGR00892        38 VTVFFKELQQ-IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR-----PVVIAGGLLASLGMILASFSSNVIELY  111 (455)
T ss_pred             hhhhHHHHHH-HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch-----HHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence            4455666554 456654333 334555566678888999999999998     666666655555555554555555443


Q ss_pred             HHH-HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          302 ALF-TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      ... .+.+++.+...++....+.+.+ +++|+++.|+.+..... |..++|.+.+.+.+..| |+..|+..+.+.++..+
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~r~~a~g~~~~~~~~-g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       112 LTAGFITGLGLAFNFQPSLTMLGKYF-YRRRPLANGLAMAGSPV-FLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCV  188 (455)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHH-HhhHHHHHHHHHhcccH-HHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence            332 3445555544455566666766 57899999999766666 77888989999998775 88888888776655544


Q ss_pred             Hh
Q 014646          381 IW  382 (421)
Q Consensus       381 ~~  382 (421)
                      ..
T Consensus       189 ~~  190 (455)
T TIGR00892       189 CG  190 (455)
T ss_pred             HH
Confidence            33

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=2.2e-09  Score=98.45  Aligned_cols=150  Identities=11%  Similarity=0.015  Sum_probs=105.4

Q ss_pred             HHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014646          223 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  301 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (421)
                      +...+|.+. +.++.++... .......++..++.++.|+++||+|||     +.+..+.....+..+.....++.+..+
T Consensus        32 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~l~  105 (406)
T PRK15402         32 IQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR-----PVMLAGVAFFILTCLAILLAQSIEQFT  105 (406)
T ss_pred             HhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            333445444 4567765444 334667788889999999999999999     777666666666655555566666666


Q ss_pred             HHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      ....+.+.+.+...+.....+.|.+|+++|.++.++.+..... +..++|.+.+.+.+..+ |+..+++.++..++...
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~l~~~~~-w~~~~~~~~~~~~~~~~  182 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL-APLLGPLVGAALIHVLP-WRGMFVLFAALAALSFF  182 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHH
Confidence            6666666666655566677888889889999999988655444 77889989888888655 77777776666554443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=2.7e-10  Score=97.01  Aligned_cols=119  Identities=15%  Similarity=0.167  Sum_probs=92.9

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhh
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      .+++.+.+...+.++..|.++||+|||     ..+..+.+...+..++.....+...++..=++.| ...+..+...+++
T Consensus        72 flGSsF~ilQ~~sS~~~G~~SD~yGRk-----pvll~c~~~va~s~ll~~~S~~F~afv~aR~l~G-i~kgnl~v~rAii  145 (451)
T KOG2615|consen   72 FLGSSFSILQFISSPLWGCLSDRYGRK-----PVLLACLIGVALSYLLWALSRNFAAFVLARFLGG-IFKGNLSVIRAII  145 (451)
T ss_pred             hHhhHHHHHHHHhhhhhhhhhhhhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCchHHHHHHH
Confidence            456778899999999999999999999     8887777777777777776667633333233333 3445667789999


Q ss_pred             hcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh---hhhchhhhh
Q 014646          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD---HVNNWRKTT  368 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~  368 (421)
                      .|.+++++|+.+++..+...+. |.++||.++|++..   ..|.|...+
T Consensus       146 sdV~sek~r~l~ms~v~~a~~l-GfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGL-GFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             HhhcChhhccceeeeeehhhhc-chhhcchhhhHHHhhHhhhccCchHH
Confidence            9999999999999999777666 99999999999988   556664444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.15  E-value=2.4e-09  Score=98.10  Aligned_cols=142  Identities=12%  Similarity=0.097  Sum_probs=103.5

Q ss_pred             HHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 014646          232 YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  310 (421)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (421)
                      .+.++.+.... ...++..++..++.++.|+++||+|||     +.+..+..+..+..+.....++.+.+++.-++.+++
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr-----~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~  117 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR-----PVLITGALIFTLACAATLFTTSMTQFLIARFIQGTS  117 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch-----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566665444 444667788899999999999999999     777766666666666666667777776666666666


Q ss_pred             HhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      .+...+.......|.+|++++++++++.+..... +..++|.+.+.+.+..+ |+..|+..++..++..+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~lg~~l~~~~g-w~~~f~~~~~~~~i~~~  185 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV-APIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAFV  185 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence            5544444566777888888999999998766665 88889988888887655 88888877666554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.14  E-value=2.3e-10  Score=103.94  Aligned_cols=122  Identities=15%  Similarity=0.048  Sum_probs=108.2

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++|++.+...+....++.+. |+++|++..
T Consensus       252 ~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q  330 (382)
T TIGR00902       252 AEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQ  330 (382)
T ss_pred             HHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHH
Confidence            3456778899999999999999999999999999999999999999999999999999999999999998 988999999


Q ss_pred             HHHH-hHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHH
Q 014646           83 SMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  126 (421)
Q Consensus        83 ~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~  126 (421)
                      ++++ ...++|.++++.++|.+.+++|+ ..|++.++++++..++
T Consensus       331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9986 57789999999999999999986 6677777776654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.12  E-value=3.3e-09  Score=96.68  Aligned_cols=146  Identities=14%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             HHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHH
Q 014646          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYG  299 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (421)
                      ......+|... +.++.+..+. ...+...++..++.+..|++.||+|||     +.+..+..+..+..+.....++.+.
T Consensus        26 ~~~~~~lp~i~-~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r-----~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLR-QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER-----RSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHCcchHH
Confidence            34445566655 4567775554 445777788899999999999999999     8898888888888888888888888


Q ss_pred             HHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          300 FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      +++.-.+.+++.+...+....++.+.+| ++|+.+++..+..... |..+++.+.+++.++..+|+..+.+.+..
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMG-GGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8888888888888777777778888775 7899999998655555 77888888888888765576666554444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.12  E-value=1.2e-09  Score=102.01  Aligned_cols=151  Identities=14%  Similarity=0.052  Sum_probs=102.5

Q ss_pred             HHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH-----hh
Q 014646          221 GAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF-----CL  294 (421)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  294 (421)
                      ..+....|.+. +.++.+..+. ...+...++..++.++.|+++||+|+|     +.+..+.++.++......     ..
T Consensus        46 ~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~  119 (467)
T PRK09556         46 KNFKAAQNDMI-STYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK-----QFLPFLLILSAICMLGFGASLGSGS  119 (467)
T ss_pred             cChhhhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc-----chHHHHHHHHHHHHHHHHHHHhccc
Confidence            33444466544 4567665554 445667788899999999999999999     665554444433332222     23


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh--hchhhhhhHHH
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV--NNWRKTTLALT  372 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~--~~~~~~~~~~~  372 (421)
                      ++.+..++.-++.+++.+...+....++.+.+|+++|++++|+.+...+. |.++++.+..++.+..  ++++..+.+.+
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l-G~~l~~~i~~~~~~~~~~~~~~~~f~~~g  198 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL-GGAGAGGVALWGANYFFDGHVIGMFIFPS  198 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch-hhhHHHHHHHHHHHhhccCcchhHHHHHH
Confidence            56666777777788888888888889999999999999999999655555 8788887776665542  23555565555


Q ss_pred             HHHHHH
Q 014646          373 SIFFLA  378 (421)
Q Consensus       373 ~~~~~~  378 (421)
                      ...++.
T Consensus       199 ~~~~~~  204 (467)
T PRK09556        199 IIALII  204 (467)
T ss_pred             HHHHHH
Confidence            444433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.11  E-value=5.1e-09  Score=95.65  Aligned_cols=146  Identities=9%  Similarity=0.032  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +..++..++...+.........|.+ ++.++.+..+. ...+...++..++++..+++.||+|+|     +.+..+..+.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----~~~~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK-----AGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            3344444555555555555666765 56677776555 445777889999999999999999999     7777777666


Q ss_pred             HHHHHHHHh---hchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh
Q 014646          285 AISCLTAFC---LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       285 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      .+..+....   .++.+.+++..++.+.+.+...+....+..+..|++++++..++.+...+. |..++|.+.+.+.
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-G~~~g~~i~~~l~  154 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPF-GSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            665554322   245666677777788888888888888888888889999999999766666 8889998887774

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.11  E-value=2.4e-09  Score=97.84  Aligned_cols=169  Identities=12%  Similarity=0.006  Sum_probs=105.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ||.+|......++.......+..++|.|+.+..+.++.+. .......+...++.++.|+++||+|||     +.+....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr-----~~~~~~~   75 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK-----KHLLWII   75 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHH
Confidence            4778888888888888888888999999998888886555 445778899999999999999999998     5554333


Q ss_pred             HHHHHHHH---HHHhhc-----hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhH
Q 014646          282 FLGAISCL---TAFCLS-----SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       282 ~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      ........   .....+     ......+...+.+.+.+...+....+..+..  +.++...|......+ +|..++|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~-~g~~~g~~~  152 (396)
T TIGR00882        76 SGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGC-VGWALCASI  152 (396)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcc-cHHHHHHHH
Confidence            22222111   111111     1111122223344444444555555544432  223345565544444 488889989


Q ss_pred             HHHhhhhhhchhhhhhHHHHHHHHHHHH
Q 014646          354 VGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       354 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~  381 (421)
                      .|.+.+.  +++..|+..+...++..++
T Consensus       153 ~g~l~~~--~~~~~f~~~~~~~~~~~~~  178 (396)
T TIGR00882       153 AGILFSI--DPQIVFWLGSGFALILMLL  178 (396)
T ss_pred             Hhhhhcc--CchHHHHHHHHHHHHHHHH
Confidence            8888764  4767777766655554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.11  E-value=2.7e-10  Score=106.95  Aligned_cols=131  Identities=9%  Similarity=0.015  Sum_probs=98.4

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc--h-hH-HHHHHHHHhhhhhhh-hcccccccccccCCCCCc
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVGVGEAS-FISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r   78 (421)
                      .+++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ ....+-++.+.+.+. ..|....++.|.+|+++|
T Consensus       319 ~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  398 (479)
T PRK10077        319 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  398 (479)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence            457789999999999999999999999888877765431  1 11 222334444444443 336678999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHH------hhcccchhHHHHHhHHHHHHHHHHHHhccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  134 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~------l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~  134 (421)
                      ++++++.+....+|..+++.+.+.      +.+.++|++.|++.+++.++..++.+++.||+
T Consensus       399 ~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        399 GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999999999888665544      34578899999999888777777776666664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.11  E-value=3.5e-09  Score=99.81  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=83.7

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch------hHHHHHHHHHHHHHHhcccc
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS------LYGFLALFTVGELLVFATQA  316 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  316 (421)
                      .+.....++.+++.++.|++.||+|||     +.+....++..+..++.....+      .+.+++.-.+.+++.+...+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRK-----RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccH-----HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            455677788999999999999999999     7766665555554444333332      45566777788888888889


Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      ....+..|.+|++.|++++++.+..... |..+++.+...+.
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~-g~~~g~~~~~~~~  175 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGF-GILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999999655555 7777776665543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.10  E-value=1e-08  Score=91.73  Aligned_cols=128  Identities=13%  Similarity=0.005  Sum_probs=104.3

Q ss_pred             hhhHHHHhhccchhh-H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014646          227 GPKAGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  304 (421)
Q Consensus       227 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (421)
                      ...++.+.+|.+..+ . ........+..+..+.+|+++||+|.|     +.+....+.-.+...+..+..+...+.+.-
T Consensus        48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333566678888766 3 445677788899999999999999999     888877777777777777777788888888


Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      ++.|.+.+..+ ....++..-+|+++|+++.|+.+..... |.++++++.+++ ..+|
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~v-G~~Ia~~L~qll-~s~g  177 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLL-GVFLSSVLGQLL-VTLG  177 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhcC
Confidence            88999988888 8899999999999999999999776666 989999898884 4444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.09  E-value=2.9e-07  Score=83.90  Aligned_cols=307  Identities=12%  Similarity=0.041  Sum_probs=166.6

Q ss_pred             hhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc----ch---------------------------hHHHHHHHHHhhh
Q 014646            8 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----FD---------------------------FWSIAICRMLVGV   56 (421)
Q Consensus         8 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~---------------------------~~~l~~~r~l~G~   56 (421)
                      .++.+++++|++|++++-+....+.....++++.    ++                           .|...+.-+...+
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            7889999999999999888777776666665544    11                           2222222333334


Q ss_pred             hhhhhcc-cccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc--------ccchh----HHHHHhHHHHHHH
Q 014646           57 GEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWR----YAFWGEAILMLPF  123 (421)
Q Consensus        57 ~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr----~~f~~~~~~~~~~  123 (421)
                      -.....+ .-..+.+|.++.+|-.|..++.+.+.++|.++++.+..++.+        ...|.    ..+.+.++..++.
T Consensus       141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  220 (472)
T TIGR00769       141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI  220 (472)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH
Confidence            3444444 567889999999999999999999999999999999888762        11342    2334444333333


Q ss_pred             HHHHHhcccccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhch
Q 014646          124 AVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE  203 (421)
Q Consensus       124 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  203 (421)
                      ..+...+ .+....  +++..+ .                   +    +   ..+++       +...+..++++.++++
T Consensus       221 ~~~~~~l-~~~~~~--~~~~~~-~-------------------~----~---~~~k~-------k~k~~~~es~k~i~~S  263 (472)
T TIGR00769       221 ILLYWWV-NRNVLT--DPRSYN-P-------------------A----L---KEKKV-------KPKMSTMESLKFLVSS  263 (472)
T ss_pred             HHHHHHH-HhcccC--Cccccc-h-------------------h----h---ccccC-------CCCCCHHHHHHHHHhC
Confidence            3333322 111100  000000 0                   0    0   00000       1122445788999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-H---HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M---FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  279 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  279 (421)
                      |.+..+.+...+++...+.+..-......+.+..+.+.. .   +....++..++..++.+++.+|+|-+     .....
T Consensus       264 ~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~-----~~a~i  338 (472)
T TIGR00769       264 PYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL-----TAALI  338 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHH
Confidence            999988888777777766666544445555553222111 2   22333444455566668888888876     22222


Q ss_pred             HHHHHHH---HHHHH-Hhhch-----------h-HHHHHHH----HHHHHHHhccccchhhhhhcccCcchhHHHHHHHH
Q 014646          280 ATFLGAI---SCLTA-FCLSS-----------L-YGFLALF----TVGELLVFATQAPVNYVCLHSVKPSLRALSMAIST  339 (421)
Q Consensus       280 ~~~~~~~---~~~~~-~~~~~-----------~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (421)
                      .-++..+   .+... .+.++           + .......    .+.-..-....-+.--.+---+++|.|.++=+...
T Consensus       339 ~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD  418 (472)
T TIGR00769       339 TPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAID  418 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhh
Confidence            2111111   11111 11110           0 1011111    11122222333444334444467788888888888


Q ss_pred             HHHHHhccCCchhHHHH
Q 014646          340 VSIHIFGDVPSSPLVGV  356 (421)
Q Consensus       340 ~~~~~~g~~~~~~~~g~  356 (421)
                      ...+.+|-..|..+...
T Consensus       419 ~v~~r~Gks~gs~i~~~  435 (472)
T TIGR00769       419 VVAARLGKSGGALIQQG  435 (472)
T ss_pred             hhhhhhhhHHHHHHHHH
Confidence            77777676666654433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.06  E-value=1.1e-08  Score=95.12  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=111.1

Q ss_pred             HHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014646          225 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF  304 (421)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (421)
                      .-++....+. |.++...++.....++..++.++.|+++|.+|||     ...+...++..+..+.....++...++...
T Consensus        65 ~~l~~I~~di-G~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----~~~i~g~~l~vvG~Iv~atA~~~~~~iag~  138 (599)
T PF06609_consen   65 SILPYINADI-GGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----YFFIIGSLLGVVGSIVCATAQNMNTFIAGM  138 (599)
T ss_pred             HHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----HHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence            3345445554 4455455666667788888899999999999999     888889989998888888888888888888


Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhh
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      .+.+++.+... .....+.|..|.+.|..+.++.. .........+|.+...+..+ ++|++.+++..+...++.+..++
T Consensus       139 ~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~-~~~i~~~~~~~~ia~~~~~~-~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  139 VLYGVGAGVQE-LAALAISELVPNKWRGLGLAIAS-IPFIITTWISPLIAQLFAAH-SGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHH-HHHHhhhcccHHHHHHhccC-CCcchHHHHHHHHHHHHHHHHHH
Confidence            88888765443 34556889999999998887774 44444555677666555544 56999998887766665554443


Q ss_pred             h
Q 014646          385 G  385 (421)
Q Consensus       385 ~  385 (421)
                      +
T Consensus       216 f  216 (599)
T PF06609_consen  216 F  216 (599)
T ss_pred             H
Confidence            3

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00898 2A0119 cation transport protein

Probab=99.06  E-value=5.9e-10  Score=105.33  Aligned_cols=128  Identities=12%  Similarity=-0.077  Sum_probs=104.1

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchh--HHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +.+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+...+....+..|.+|++.|++++
T Consensus       369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  448 (505)
T TIGR00898       369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGV  448 (505)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhH
Confidence            4577889999999999999999999998888887776654  45555666777777777888889999999999999999


Q ss_pred             HHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccc
Q 014646           83 SMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        83 ~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ++.+....+|.+++|.+.+ + ...++..++.+.++..++.+++.+ ++||+.
T Consensus       449 g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       449 GVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             hHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            9999999999999999988 4 345677888888877777666654 447643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.05  E-value=4.1e-09  Score=88.62  Aligned_cols=311  Identities=10%  Similarity=-0.004  Sum_probs=199.5

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      +.+.-.+.=.+.|..--|++++.-.+.......+.-+.++.+.+=+.-+..|...+ ...+-++++-+-.+|+++.++.+
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHH
Confidence            34555666678899999999998888888888899999999999999999998887 45578899999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcc--cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      ...++.-.|-..|..++..+++.  .++...-.+.-....+..++.+++ |..++..-...++++.         .    
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL-P~v~rSl~f~~~~~~~---------~----  199 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL-PRVKRSLYFHRLEDKI---------S----  199 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC-CCCchhhhhhcccccc---------e----
Confidence            99999999999999999888753  334444444433333333333333 4321110000000000         0    


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                          ..+.++...    ..+...-........++++++..+||.+....+-+.+...+++-+.+|....-++.. .++..
T Consensus       200 ----v~~~e~~~~----~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~  270 (433)
T KOG3810|consen  200 ----VGDLEEMNP----QASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA-PNPAN  270 (433)
T ss_pred             ----eccchhcCc----cchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC-CCchh
Confidence                000000000    000000000233344556777788999888888888888888888777776655543 22211


Q ss_pred             H---HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch
Q 014646          242 M---MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV  318 (421)
Q Consensus       242 ~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (421)
                      .   ..-++..+.+.++.+..|.+--.+.|+..   .++..+...-+...+.+...++.|...+...+.........+..
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA  347 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIA  347 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHH
Confidence            1   11234445566677777777554444311   34445555555566666667788887777777777777777777


Q ss_pred             hhhhhcccCcchhHHHHHHHHHH
Q 014646          319 NYVCLHSVKPSLRALSMAISTVS  341 (421)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~  341 (421)
                      ...++.....|.-|...|+.++.
T Consensus       348 ~~~iA~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  348 TFQIARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             HHHHHHhhhhhhheeeeehHHHH
Confidence            77778888888889999987433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.05  E-value=6.3e-09  Score=92.86  Aligned_cols=187  Identities=10%  Similarity=0.007  Sum_probs=142.6

Q ss_pred             hhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccch
Q 014646          194 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA  273 (421)
Q Consensus       194 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  273 (421)
                      +.....++.++....+++...+++.+.....+++=-++++..+.+........+...+.++.-++.+++.+|+|+-    
T Consensus       361 ~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv----  436 (618)
T KOG3762|consen  361 LADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV----  436 (618)
T ss_pred             HHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc----
Confidence            3444456677776666666666666666666666556677665443222333445566688888899999999998    


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhH
Q 014646          274 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                       +++..+..+...=++......++|..+.+-.+-+...+..+....+++....||+.++++.++.......+|--+|+++
T Consensus       437 -~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI  515 (618)
T KOG3762|consen  437 -NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI  515 (618)
T ss_pred             -ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence             7777777777777777778889999999999999999999999999999999999999999999888888899999999


Q ss_pred             HHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          354 VGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       354 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      +|.+.+.++ -...|..+++.+++.++......
T Consensus       516 GG~~v~~fg-~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  516 GGFVVERFG-ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhhhheeeh-hHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999987 44677777766666665555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.04  E-value=2.7e-09  Score=99.71  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=103.2

Q ss_pred             hccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHH
Q 014646          235 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC--LSSLYGFLALFTVGELLV  311 (421)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  311 (421)
                      ++.+.... .+.+...++..++.++.|++.||+|+|     +.+..+.++..+..++...  ..+.+..++.-++.|++.
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  145 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK-----WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQ  145 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc-----hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhc
Confidence            34444333 345667788999999999999999998     6666665555444443322  233455566666777888


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      +...+....++.+.+|+++|++++++.+..... |.+++|.+.+.+.+...+|+..|++.++..++..+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQL-GTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHH
Confidence            888888889999999999999999999665665 8899999999998874348888888776655444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.04  E-value=3.1e-09  Score=81.50  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             hHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhccc
Q 014646          247 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSV  326 (421)
Q Consensus       247 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (421)
                      ...++..++.+..+++.||++||     +.+...........+.....++.+.......+.+++.+...+.......|..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            34567788899999999999998     6666665555555555555566666666677777777777777888899999


Q ss_pred             CcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHH
Q 014646          327 KPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  381 (421)
                      |+++|+++.++.+...+. |..++|.+.+.+.+..+ ++..+.......+...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        81 PPEERGVALGLMSAGIAL-GPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFIL  133 (141)
T ss_pred             ChhhhhHHHHHHHHhHHH-HHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHH
Confidence            999999999999766665 88999999999988755 656666655554444333

>PRK09952 shikimate transporter; Provisional

Probab=99.02  E-value=1.8e-08  Score=93.19  Aligned_cols=162  Identities=16%  Similarity=0.143  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhh--ccchhhHHHH-----hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHH
Q 014646          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIY--HMSNADMMFG-----GVTIVCGIVGTISGGFILDQMGATISNAFKLLSA  279 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  279 (421)
                      ....+.+++-..-...+....|.+..+.+  +.++......     .+..++..++.++.|++.||+|||     +.+..
T Consensus        25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr-----~~l~~   99 (438)
T PRK09952         25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK-----RMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH-----HHHHH
Confidence            33333444433334444444554444433  3443322221     233455678888999999999999     77777


Q ss_pred             HHHHHHHHHHHHHhhchhH--------HHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCch
Q 014646          280 ATFLGAISCLTAFCLSSLY--------GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +..+..+..++....++..        .+++.-.+.+++.+..++....++.|..|+++|+...+..+.... +|..+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~-~G~~l~~  178 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG-VGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHHHHH
Confidence            7777777666666655543        244455667777777778888899999999999999888854444 4766666


Q ss_pred             hHHHHhhhhh-------hchhhhhhHHHHH
Q 014646          352 PLVGVLQDHV-------NNWRKTTLALTSI  374 (421)
Q Consensus       352 ~~~g~l~~~~-------~~~~~~~~~~~~~  374 (421)
                      .+...+....       -+|+..|++.+..
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~  208 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVL  208 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence            5555544321       2477777765544

>PRK10133 L-fucose transporter; Provisional

Probab=99.02  E-value=3.6e-08  Score=90.99  Aligned_cols=145  Identities=9%  Similarity=0.029  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHH
Q 014646          207 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ..+.+.++...+.........|.+ ++.++.++.+. .......++..++.+..|++.||+|||     +.+..+..+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r-----~~l~~g~~~~~  102 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHH
Confidence            444454556666666677778876 66788886555 444777888999999999999999999     77777776666


Q ss_pred             HHHHHH---HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh
Q 014646          286 ISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       286 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      +..++.   ...++.+.+++..++.+.+.+...+..+.++.+..+++.+...+++.+..... |..++|.+.+.+.
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~-G~~~g~~~g~~l~  177 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            665443   23556777777778888888888888888887765556666678888655554 8888887766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.02  E-value=1.1e-08  Score=106.73  Aligned_cols=156  Identities=10%  Similarity=0.028  Sum_probs=109.1

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh---HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhh
Q 014646          199 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFK  275 (421)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  275 (421)
                      ..++++.++.+++..++..+........+..+....++.+...   ....++..++.+++.++.|+++||+|||     +
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk-----~   78 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN-----R   78 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH-----H
Confidence            3456777777776666666555444444444444444444322   2334566777889999999999999998     6


Q ss_pred             HHHHHHHHHHHHHH---HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchh
Q 014646          276 LLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       276 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      .+..+.++..+..+   +.....+.+.+++..++.+++.+...+....++.+.+|+++|++++|+.+..... |.++|+.
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i-g~~lg~~  157 (1146)
T PRK08633         79 VIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIV-AILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHH-HHHHHHH
Confidence            66655544333322   2223345666777777788888888888899999999999999999999666555 8899999


Q ss_pred             HHHHhhhh
Q 014646          353 LVGVLQDH  360 (421)
Q Consensus       353 ~~g~l~~~  360 (421)
                      +.+++.+.
T Consensus       158 l~~~l~~~  165 (1146)
T PRK08633        158 LFSFLFES  165 (1146)
T ss_pred             HHHHHHHh
Confidence            99998875

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.01  E-value=1.2e-08  Score=106.07  Aligned_cols=163  Identities=13%  Similarity=-0.024  Sum_probs=106.8

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHH----HhhhHHHHhhccch-hh-HHHHhhHhHHHHHHHhHHHHHHHhhcccccc
Q 014646          199 VLLQEKVYVVNVLGYIAYNFVIGAYSY----WGPKAGYNIYHMSN-AD-MMFGGVTIVCGIVGTISGGFILDQMGATISN  272 (421)
Q Consensus       199 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  272 (421)
                      .+++++.+..+....++..+..+....    +....+.+..+.+. .. ....++..+..++..++.|+++||++||   
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk---   82 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKA---   82 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHH---
Confidence            355666666666655555444332222    22211222221211 11 2333556677889999999999999998   


Q ss_pred             hhhHHHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCC
Q 014646          273 AFKLLSA---ATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       273 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                        +++..   ..+......+.....++.+.++++.++.+.+.+...+...+++.+.+|++++++++|+.++.... |.++
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~i-g~~i  159 (1140)
T PRK06814         83 --KLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFI-AILL  159 (1140)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHH-HHHH
Confidence              54322   22222222222223367777788888888888888899999999999999999999999766666 9999


Q ss_pred             chhHHHHhhhhhhchhhhh
Q 014646          350 SSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       350 ~~~~~g~l~~~~~~~~~~~  368 (421)
                      ||.+.|++.+..+ +...+
T Consensus       160 gp~l~g~l~~~~~-~~~~~  177 (1140)
T PRK06814        160 GTIIGGLATISGN-FVILV  177 (1140)
T ss_pred             HHHHHHHHHhccc-cHHHH
Confidence            9999999998755 65555

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=2.7e-08  Score=91.13  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhh-----cccccchhhHHHHHHHHHHH
Q 014646          212 GYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAI  286 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~  286 (421)
                      .++.+.........-+|.|+++. |.+..+..+....... .+..++.|+++||+     |||+    +.+..+....++
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr----~~l~~~~~~~~l   80 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRR----GWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcch----hHHHHHHHHHHH
Confidence            35566667777778899999985 6665555333222222 57789999999999     6652    345554544444


Q ss_pred             HHHHHHhh---chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc
Q 014646          287 SCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN  363 (421)
Q Consensus       287 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~  363 (421)
                      ........   .+.+...+..++.+++.....++..+++.+.+|+++|+++.++....... |..+++.+.+.+.+...+
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~-g~i~g~~l~~~l~~~~~g  159 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRL-AMLVSGGLALWLADRVLG  159 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHH-HHHHHhHHHHHHHhcccC
Confidence            43333333   23444444444555666666777888999999999999999999654444 888888888888886445


Q ss_pred             hhhhhhHHHHHHHHHHH
Q 014646          364 WRKTTLALTSIFFLAAG  380 (421)
Q Consensus       364 ~~~~~~~~~~~~~~~~~  380 (421)
                      |+..|++.+...++...
T Consensus       160 w~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        160 WGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888877766544333

>PTZ00207 hypothetical protein; Provisional

Probab=98.99  E-value=3.9e-08  Score=92.07  Aligned_cols=154  Identities=15%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             HHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-----
Q 014646          220 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-----  294 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  294 (421)
                      .+.+..+.|. +++.++.+..+.......+.......+..|++.||+|+|     +.+..+.++..+..++....     
T Consensus        43 ~y~fsv~s~~-L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R-----~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         43 MYAFNLISGA-MQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPR-----PIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3455555564 466688886554322111222234556789999999999     77777777666666555443     


Q ss_pred             -chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccC-CchhHHHHhhhhhhchhhhhhHHH
Q 014646          295 -SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDV-PSSPLVGVLQDHVNNWRKTTLALT  372 (421)
Q Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~-~~~~~~g~l~~~~~~~~~~~~~~~  372 (421)
                       .+.+.+.+..++.+.+.+...+.....+.+.+ |++||.+.|+.....+. |++ ++++..+++.+   ++...+++.+
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gL-GsaI~~~l~~~l~~~---~~~~~fl~l~  191 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGL-GSAILGSIQLAFFSD---NTSAYFFFLM  191 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---hHHHHHHHHH
Confidence             35666666666777776666666666677766 58899999999777776 665 45555555444   2445666666


Q ss_pred             HHHHHHHHHhhh
Q 014646          373 SIFFLAAGIWFV  384 (421)
Q Consensus       373 ~~~~~~~~~~~~  384 (421)
                      ...++..++...
T Consensus       192 vl~~vv~ll~~~  203 (591)
T PTZ00207        192 SFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHh
Confidence            555554444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.98  E-value=8e-10  Score=100.94  Aligned_cols=118  Identities=8%  Similarity=0.006  Sum_probs=93.3

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHH--hhhcc--cchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +..++.++.|+++||+|||+.+..+..+..+..  +...+  .++.+.+.+..++.|++.+...+...+++.|.+|+++|
T Consensus       267 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  346 (394)
T TIGR00883       267 LFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVR  346 (394)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccce
Confidence            456788899999999999998775554444333  12222  35677777888999999988999999999999999999


Q ss_pred             hhHHHH-HHhHHHHHhHHHHHHHHHhhcccc-hhHHHHHhHHHH
Q 014646           79 TAWLSM-FYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  120 (421)
Q Consensus        79 ~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~  120 (421)
                      ++++++ ++.+..+|..++|.+++.+.++.| |++.++...+..
T Consensus       347 ~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       347 YTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            999998 456677899999999999999888 988877776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.97  E-value=4e-08  Score=90.83  Aligned_cols=123  Identities=16%  Similarity=0.109  Sum_probs=85.1

Q ss_pred             hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchh--------HHHHHHHHHHHHHHhccccc
Q 014646          246 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL--------YGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ....++..++.++.|+++||+|||     +.+..+.....+..+.....++.        ..+++.-++.|++.+..++.
T Consensus        70 ~~~~~~~~ig~~~~G~l~Dr~Grr-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~  144 (432)
T PRK10406         70 AAGFLMRPIGGWLFGRIADKHGRK-----KSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT  144 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            334455669999999999999999     87777777776666655444432        23445556777777888888


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh--------hhhchhhhhhHHHHHH
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD--------HVNNWRKTTLALTSIF  375 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~--------~~~~~~~~~~~~~~~~  375 (421)
                      ...++.|..|+++|+.+.++.+..... |..+++.+...+..        .. +|+..|++.++..
T Consensus       145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~  208 (432)
T PRK10406        145 SATYMSEVAVEGRKGFYASFQYVTLIG-GQLLALLVVVVLQQTLEDAELREW-GWRIPFALGAVLA  208 (432)
T ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHH
Confidence            899999999999999999887544443 65665544433321        22 4888887655543

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.96  E-value=7e-08  Score=90.39  Aligned_cols=174  Identities=14%  Similarity=0.011  Sum_probs=113.2

Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhh-----cccccchhh
Q 014646          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFK  275 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~  275 (421)
                      .++++...+....+............+|.++++. +.+..+.......... .++.++.+.++||+     |||+    .
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr----~   82 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRR----G   82 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCch----H
Confidence            3555566656656666666767777788887774 5554333332222222 25789999999999     7662    2


Q ss_pred             HHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchh
Q 014646          276 LLSAATFLGAISCLTAFCL---SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      .+..+.+...+........   .+.+...+...+.+++.+...++...+..|.+|+++|+++.++....... |.++++.
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l-G~llg~~  161 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL-AMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH-HHHHHHH
Confidence            3444444444443333222   24445555556666677777777788899999999999999999655554 8888898


Q ss_pred             HHHHhhhhhhchhhhhhHHHHHHHHHHHH
Q 014646          353 LVGVLQDHVNNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       353 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  381 (421)
                      +.+++.+...+|+..|++.+...++....
T Consensus       162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        162 LALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            88888884335888888877665554433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=1.1e-08  Score=87.99  Aligned_cols=134  Identities=13%  Similarity=0.102  Sum_probs=113.5

Q ss_pred             HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhh
Q 014646          244 FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCL  323 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (421)
                      +.....+.+++.+++.|.+.||+|+|     ..++++..+.....+++.+.++.+..++.=.+-+.+.........++++
T Consensus       111 LFaskA~~qllvnp~~G~l~~~iGy~-----ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlA  185 (464)
T KOG3764|consen  111 LFASKALVQLLVNPFFGNLIDRIGYK-----IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLA  185 (464)
T ss_pred             HHHHHHHHHHHhcccchhhHHHhccc-----cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHH
Confidence            33566788899999999999999999     7788888888888888887788877777778888888888888999999


Q ss_pred             cccCcc-hhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhh
Q 014646          324 HSVKPS-LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       324 ~~~~~~-~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      +.+|++ .|++++|+.-.+... |-.+||+++|.++|..| +..+|.++++++++-..+-+.
T Consensus       186 d~f~~d~er~~vmGialgfisl-G~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  186 DVFPEDNERGSVMGIALGFISL-GVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHcccchhhhHHHHHHHHHHhc-cceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHh
Confidence            999985 689999999666555 99999999999999987 779999999888777766554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.94  E-value=3.5e-08  Score=89.65  Aligned_cols=156  Identities=14%  Similarity=0.054  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Q 014646          213 YIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  291 (421)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (421)
                      ++.+......+..++|.|+++. +.+.... ...++..+...++.++.|.+.||++|+....+... ......  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~-g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~-~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQ-GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA-LLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH-HHHHHH--HHHHH
Confidence            4555566677777889999774 5565444 44567778889999999999999998522111222 111111  11222


Q ss_pred             HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHH
Q 014646          292 FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  371 (421)
                      ...++.+..++...+.+.+.+...+.......+.  .++|+++.+....... +|..++|.+.+++.++.| |+..++..
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~-lg~~igp~lgg~l~~~~g-~~~~f~~~  164 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGS-IAFVIGSALTGKLVSWFG-EQAILWIL  164 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHH-HHHHHHHHHHHHHHHHcC-hhHHHHHH
Confidence            2235566555555556666666666555555443  4567778888765555 499999999999999876 77777766


Q ss_pred             HHHHH
Q 014646          372 TSIFF  376 (421)
Q Consensus       372 ~~~~~  376 (421)
                      +...+
T Consensus       165 ~~~~~  169 (382)
T PRK11128        165 TAGVA  169 (382)
T ss_pred             HHHHH
Confidence            54433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.94  E-value=4.5e-08  Score=89.69  Aligned_cols=143  Identities=13%  Similarity=0.014  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHh----hcccccchhhHHHH-HH
Q 014646          208 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ----MGATISNAFKLLSA-AT  281 (421)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~-~~  281 (421)
                      ......+..++.+.....+++.|+++ .+.++... ....+..+.+++..++.|+++||    +|||     +..+. ..
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-----rp~il~g~   81 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-----RPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-----HHHHHHHH
Confidence            33444455566676777778888765 56665444 34466678889999999999995    8888     44433 33


Q ss_pred             HHHHHHHHHHHhhchh-----------------HHHHHHHHHHHHHHhccccchhhhhhcccCcchh--HHHHHHHHHHH
Q 014646          282 FLGAISCLTAFCLSSL-----------------YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLR--ALSMAISTVSI  342 (421)
Q Consensus       282 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~  342 (421)
                      ....+...++...++.                 +..++.+.+..+..+...++..+++.|..|+++|  +.+.++.+...
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~  161 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM  161 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence            3333343333332221                 2223344445567777888889999999998754  57888886666


Q ss_pred             HHhccCCchhHHHHh
Q 014646          343 HIFGDVPSSPLVGVL  357 (421)
Q Consensus       343 ~~~g~~~~~~~~g~l  357 (421)
                      +. |+++++.+.+..
T Consensus       162 ~l-G~ilg~~~g~~~  175 (477)
T TIGR01301       162 AI-GNVLGYAAGAYS  175 (477)
T ss_pred             HH-HHHHHHHHHHHH
Confidence            65 888888776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.94  E-value=5.8e-09  Score=96.01  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=110.7

Q ss_pred             cccchhhHHHhhhhhcCch--HHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhhhhhhhccccccccccc
Q 014646            3 GLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      ..++|++++|++.||+|.|  +++.++++++.+..+...+        .++-+.+.+.-++.|+..|..++...++.+|.
T Consensus       329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L  408 (477)
T PF11700_consen  329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL  408 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            3567899999999999999  8999988888666666555        67888999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHHhc
Q 014646           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      .|+++.+..+|++....-....+||++.+.+.+..| -|+.+....++.++..++.+++
T Consensus       409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999998776 8888888777766655555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.93  E-value=2.1e-08  Score=87.35  Aligned_cols=167  Identities=16%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF  282 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  282 (421)
                      ++++...+.........+......+ .+.+.++.++.+. .+..++.+.+.+.++..|.+.||+|.|     ++...+.+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~-~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR-----~~~~~s~~   87 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGV-FIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR-----KWTILSML   87 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch-----HHHHHHHH
Confidence            4444444433333333333333333 3447788887666 556888899999999999999999999     77777777


Q ss_pred             HHHHHHHHHHhhchh---HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          283 LGAISCLTAFCLSSL---YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       283 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      +..+.++........   +.++++-.+.++ .+..+......++..+|+|++|.++|++ ...|. |..+...+.+.+..
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~-g~GN~-G~av~q~~~P~v~~  164 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIA-GAGNL-GVAVAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHh-ccccc-cHHHHHHHHHHHHH
Confidence            766666555444322   244444444433 3455666778889999999999999999 46666 88888888888888


Q ss_pred             hhhc--hhhhhhHHHHHHHHHH
Q 014646          360 HVNN--WRKTTLALTSIFFLAA  379 (421)
Q Consensus       360 ~~~~--~~~~~~~~~~~~~~~~  379 (421)
                      ..+.  |+....+.....++..
T Consensus       165 ~~g~~~w~~~~~i~~~~l~v~~  186 (417)
T COG2223         165 AFGFLAWRNVAGIYVVALAIAA  186 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHH
Confidence            7662  5555555554444433

>PRK15075 citrate-proton symporter; Provisional

Probab=98.93  E-value=4.8e-08  Score=90.35  Aligned_cols=159  Identities=13%  Similarity=0.089  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh--HHHHhh-----HhHHHHHHHhHHHHHHHhhcccccchhhHH
Q 014646          205 VYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD--MMFGGV-----TIVCGIVGTISGGFILDQMGATISNAFKLL  277 (421)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  277 (421)
                      ......+..++...-...+....|...++ ++.++.+  ......     ..+...++.++.|++.||+|||     +.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr-----~~l   89 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR-----KGL   89 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH-----HHH
Confidence            34445555666666677777778876665 4544322  121111     1222346788999999999999     777


Q ss_pred             HHHHHHHHHHHHHHHhhchhHH--------HHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCC
Q 014646          278 SAATFLGAISCLTAFCLSSLYG--------FLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                      ..+..+..+...+....++.+.        +++.-++.+++.+...+....++.|.+|+++|++++++.+...+. |..+
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~-g~~~  168 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV-AVVF  168 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH-HHHH
Confidence            7777666666665555555432        234445566666666666778899999999999999998655554 6666


Q ss_pred             chhHHHHhh--------hhhhchhhhhhHH
Q 014646          350 SSPLVGVLQ--------DHVNNWRKTTLAL  371 (421)
Q Consensus       350 ~~~~~g~l~--------~~~~~~~~~~~~~  371 (421)
                      ++.+.+.+.        +..| |+..|++.
T Consensus       169 g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~  197 (434)
T PRK15075        169 AALLGYLLNQWLSPAQMAEWG-WRIPFLIG  197 (434)
T ss_pred             HHHHHHHHHHhCCHHHHhccc-hHHHHHHH
Confidence            665555542        3333 77777653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.92  E-value=3.8e-09  Score=97.97  Aligned_cols=108  Identities=18%  Similarity=0.154  Sum_probs=92.1

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHhhhhhhhhcccccccccccCC------
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP------   74 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~------   74 (421)
                      ++.+++.+++++++||+|+|+++.++.++.+++.+...+. ++.+.+++..++.|++.+...+...++++|..|      
T Consensus       268 i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  347 (437)
T TIGR00792       268 VAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKT  347 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence            3456788999999999999999999998888887776665 456777788889999999888888899988865      


Q ss_pred             -CCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccch
Q 014646           75 -VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  109 (421)
Q Consensus        75 -~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  109 (421)
                       ++++|..+++.+....+|..+++.+.+.+.+..||
T Consensus       348 ~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       348 GVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             45679999999999999999999999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.90  E-value=7.8e-08  Score=78.22  Aligned_cols=290  Identities=13%  Similarity=0.127  Sum_probs=151.4

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhccccccc-ccccCCCCCc-hhH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF-IDDNAPVPQK-TAW   81 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~-i~~~~~~~~r-~~~   81 (421)
                      ..+...+.|.++|+-|||+.-+.-++.+.++++ .-.+++|-.++++|.+.|+..+..+..--++ +.|..+++.- ...
T Consensus        85 smLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW  163 (454)
T KOG4332|consen   85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW  163 (454)
T ss_pred             HHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh
Confidence            345667889999999999975555555544433 3467889999999999999999887776654 6666533211 111


Q ss_pred             HH-HHH----hHHHHHhHHHHHHHHHhhccc--chhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccc
Q 014646           82 LS-MFY----MCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSE  154 (421)
Q Consensus        82 ~~-~~~----~~~~~G~~~g~~~~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  154 (421)
                      .+ -+.    .+..+=.+++.+.+..+.+.+  |--.+|-..+.+..+...+.+   ..+....+++.+.+..       
T Consensus       164 ls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil---~~W~ENygdps~~kdl-------  233 (454)
T KOG4332|consen  164 LSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL---SSWSENYGDPSENKDL-------  233 (454)
T ss_pred             hhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH---hhhhhccCChhhhHHH-------
Confidence            11 111    222333344555555555544  344455444332222222211   2222122222222111       


Q ss_pred             cccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHH-HHHHHHHHHHhhhHHHH
Q 014646          155 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY-NFVIGAYSYWGPKAGYN  233 (421)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  233 (421)
                                                         ..++....+.+..++++..+.....++ ...+..+..|.|..--+
T Consensus       234 -----------------------------------ltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn  278 (454)
T KOG4332|consen  234 -----------------------------------LTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN  278 (454)
T ss_pred             -----------------------------------HHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCC
Confidence                                               111222344555666655544333333 33333344566654322


Q ss_pred             hhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHH
Q 014646          234 IYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------SSLYGFLALFTV  306 (421)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  306 (421)
                      ..+.+ ....+ +...+..++|+-+..++..|-..+   ....+.+..++....+.+....       .+...-.+.+++
T Consensus       279 ~e~iP-hGfiF-atFMlASmLGSSla~Rl~s~s~~~---ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~  353 (454)
T KOG4332|consen  279 DEEIP-HGFIF-ATFMLASMLGSSLASRLLSRSSPK---VESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCL  353 (454)
T ss_pred             cccCC-chhHH-HHHHHHHHHhhHHHHHHHhcCCcc---cchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHH
Confidence            22222 22222 233455566666655555543332   2233444443333333322211       133344667777


Q ss_pred             HHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHH
Q 014646          307 GELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHI  344 (421)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (421)
                      .-.+.+..+|...-+-.+.+|.+.|++.+-+...-.+.
T Consensus       354 ~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  354 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            78888999999999999999999998777665443344

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.90  E-value=5.9e-07  Score=85.84  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             chhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhcccch--------hHHHHHHHHHhhhhhhhhcccccccccccCCCC
Q 014646            6 VASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP   76 (421)
Q Consensus         6 ~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~   76 (421)
                      +..+++|.++|+ +||++.+.++.++..++.++.+++..        ....+++-.+..+|.|+.-|...+...|.++++
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~  117 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER  117 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence            467789999997 69999999999999999988776421        233566778888899999999999999999864


Q ss_pred             C---chhHHHHHHhHHHHHhHHHHHHHHHhhcc-------cchhHHHHHhHHHHHHHHHHHHhc
Q 014646           77 Q---KTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        77 ~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      +   |-..+.++..+.++|..+++.+..++.+.       .+|...|.+.++..++..++....
T Consensus       118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g  181 (654)
T TIGR00926       118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG  181 (654)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            3   66788999999999999999999888743       369999999988877766655543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.86  E-value=1.9e-08  Score=96.58  Aligned_cols=126  Identities=8%  Similarity=-0.056  Sum_probs=89.7

Q ss_pred             HHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc-------------
Q 014646          230 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS-------------  295 (421)
Q Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  295 (421)
                      -+++.++.+..+. .+.+...++..++.++.+++.||.+|+     +.+..+.++.++..++....+             
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP-----IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc-----eEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4455677775444 445677888999999999999999998     555555544444444332221             


Q ss_pred             --------------------------------------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHH
Q 014646          296 --------------------------------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI  337 (421)
Q Consensus       296 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  337 (421)
                                                            ....+++.-++.|++.+..++....++.|.+|+++|+...++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  122344566667777777778888999999999999999999


Q ss_pred             HHHHHHHhccCCchhHHHHhhhhh
Q 014646          338 STVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       338 ~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+..... |..+|+.+.+++.+..
T Consensus       213 ~~~~~~i-G~~lG~llgg~l~~~~  235 (633)
T TIGR00805       213 LESIAVF-GPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHh-hhHHHHHHHHHHHhcc
Confidence            9655444 8899998888887643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00896 CynX cyanate transporter

Probab=98.85  E-value=6.8e-08  Score=86.90  Aligned_cols=142  Identities=12%  Similarity=0.097  Sum_probs=96.8

Q ss_pred             HHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014646          224 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  302 (421)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (421)
                      ...+|.+.+ .++.+.... ...+...++..++.++.|++.||+|+|     +.+..+..+.....+.. ..++.+.+++
T Consensus        20 ~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~~~~-~~~~~~~l~~   92 (355)
T TIGR00896        20 GPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE-----RSVAAGLLLIAAGILIR-SAPGTALLFA   92 (355)
T ss_pred             cccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch-----HHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            345565554 467775554 445778889999999999999999998     66665555544444433 4455555555


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc-hhhhhhHHHHH
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSI  374 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-~~~~~~~~~~~  374 (421)
                      ...+.+++.+...+.......+.. +++|++++++.+..... |..+++.+.+.+.+..+. |+..+...+..
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~  163 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMG-GAALAAAATVPLAQHSGGHWQQALAWWALP  163 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            556666666655555566666666 46899999999766555 888888888888876543 66666555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.83  E-value=8.9e-08  Score=86.21  Aligned_cols=150  Identities=13%  Similarity=-0.008  Sum_probs=94.1

Q ss_pred             HHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhh-----cccccchhhHHHHHHHHHHHHHHHHHhh---
Q 014646          223 YSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQM-----GATISNAFKLLSAATFLGAISCLTAFCL---  294 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  294 (421)
                      .....|.+.++ .|.+..+..+.....+...+ .++.|.++||+     |||+    .++..+.+...+......+.   
T Consensus         7 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~----~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         7 VGNTLPYWLRS-KNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRR----SWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             HHhHHHHHHHH-cCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccH----HHHHHHHHHHHHHHHHHHcCCcc
Confidence            33456666665 56775555433322333333 88999999998     5551    33444444444443333333   


Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc-------hhhh
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-------WRKT  367 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-------~~~~  367 (421)
                      .+.+.+.....+.+.+.....++..+++.|.+|+++|+.+.++....... |.++++.+.+.+.+..+.       |+..
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRA-GMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccccccccHHH
Confidence            23333444444455555566677788899999999999999999655555 889899898888877653       7777


Q ss_pred             hhHHHHHHHHHH
Q 014646          368 TLALTSIFFLAA  379 (421)
Q Consensus       368 ~~~~~~~~~~~~  379 (421)
                      |++.++..++..
T Consensus       160 f~i~ai~~l~~~  171 (356)
T TIGR00901       160 FFWTALLILPGL  171 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            777766554433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.83  E-value=1.5e-08  Score=92.33  Aligned_cols=122  Identities=10%  Similarity=-0.035  Sum_probs=93.1

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc------cchhHHHHHHHHHhhhhhhhhcccccccccccCCC-C
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV-P   76 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~   76 (421)
                      ..++.++.|++.||+|+|+.+..+..+.++..+....      .++...+.....+.+++.+...+...+.+.+..++ +
T Consensus       257 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (390)
T TIGR02718       257 VLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD  336 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            4456788999999999999988877665333322211      23344445556666777777777777777777776 7


Q ss_pred             CchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHH
Q 014646           77 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  125 (421)
Q Consensus        77 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~  125 (421)
                      ++++.++..+...++|..+||.++|.+.+..||+..|++.+++.++..+
T Consensus       337 ~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       337 QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999988876655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.83  E-value=1.3e-08  Score=86.62  Aligned_cols=123  Identities=7%  Similarity=-0.010  Sum_probs=95.3

Q ss_pred             chhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHH
Q 014646            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      -|.++.+.+.||+|||+++..+.+++++..++...+.+-....+.-+..-+..++.+.+.+.|..|.+|.+-|+...|.-
T Consensus       396 PGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtc  475 (528)
T KOG0253|consen  396 PGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTC  475 (528)
T ss_pred             CchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhh
Confidence            36789999999999999999999999999988877765444433334444444556678899999999999999999999


Q ss_pred             HhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           86 YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        86 ~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      +...-+|.++.|.++  +....+-..+..+.+.+.++.+++..++
T Consensus       476 SsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  476 SSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence            999999999999999  3322344556666666666666666655

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.82  E-value=1.7e-08  Score=89.56  Aligned_cols=128  Identities=11%  Similarity=0.153  Sum_probs=112.6

Q ss_pred             chhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHH
Q 014646            6 VASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF   85 (421)
Q Consensus         6 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~   85 (421)
                      +.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+..+........|+.+.+|+|-..+...+.
T Consensus       274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            34467789999999999999999999999999999999999999999999999999999999999999998877888774


Q ss_pred             -HhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccc
Q 014646           86 -YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        86 -~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                       +...++|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+.+++
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence             788999999999999999999999999999999988888888888754

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.79  E-value=6.4e-08  Score=86.33  Aligned_cols=177  Identities=12%  Similarity=0.050  Sum_probs=129.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc----cchhhH-HHHhhHhHHHHHHHhHHHHHHHhh-cccccchhhH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH----MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKL  276 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~  276 (421)
                      .|.++.+...-+.--++++++-..+..|+....+    .++.++ .+...+..-.-+..+++||++||+ |+|     +.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~-----~t   94 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR-----RT   94 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----HH
Confidence            3445556666677788888888888888887777    775444 222333322335678999999995 777     77


Q ss_pred             HHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHhccccchhhhhhcccCcc--hhHHHHHHHHHHHHHhccCCchh
Q 014646          277 LSAATFLGAISCLTAFCL--SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS--LRALSMAISTVSIHIFGDVPSSP  352 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~  352 (421)
                      +..+.++..+..+.+...  .....+.+.+.+...+.+..=+....+..+.+|++  +|..+.++..+..+. |+.++|.
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi-Gsl~~p~  173 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI-GSLIAPI  173 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh-HHHHHHH
Confidence            777777777766666555  34556666666777888888888888999999884  577778887777787 8999999


Q ss_pred             HHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          353 LVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       353 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      +.+++.++.| |...|...+..+..+.+.+...+
T Consensus       174 i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         174 ITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999977 88888888888777777766544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.72  E-value=1.9e-07  Score=82.07  Aligned_cols=99  Identities=20%  Similarity=0.221  Sum_probs=74.5

Q ss_pred             cchhhHHHhhhhh----cCchHH-HHHHHHHHHHHHhhhcccchhH-----------------HHHHHHHHhhhhhhhhc
Q 014646            5 LVASPIFASLAKS----HNPFRL-IGVGLSVWTFATAGCGSSFDFW-----------------SIAICRMLVGVGEASFI   62 (421)
Q Consensus         5 ~~~~~~~g~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~   62 (421)
                      .+.+|+.|..+||    |||||. +..+.+..+++.++..++.++.                 .++++--+.-+..-...
T Consensus        81 ~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q  160 (498)
T KOG0637|consen   81 LLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ  160 (498)
T ss_pred             ceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence            4668899999995    788886 4556667777888888876543                 23333334444555777


Q ss_pred             ccccccccccCCCCCchh-HHHHHHhHHHHHhHHHHHHHHHh
Q 014646           63 SLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        63 ~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l  103 (421)
                      ..+-+++.|...++++.+ +++++.....+|..+|+.+++++
T Consensus       161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence            788999999998776666 99999999999999999988754

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.7e-06  Score=75.20  Aligned_cols=133  Identities=11%  Similarity=0.035  Sum_probs=102.4

Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH---hhchh
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---CLSSL  297 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  297 (421)
                      ...--+-..+++.++.+..+. .+......+..+.++..+++.+|+|+|     .-++.+..+.++.+.+..   ...+.
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk-----~gi~lgL~l~avg~~lF~pAa~~~~y  104 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK-----AGIVLGLLLYAVGAALFWPAASSKSY  104 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            333334445778888886555 445677788899999999999999999     777777777777776664   33455


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ..++...++.+.+.+......+.++...-+++..+.-+.+...+... |.+++|.+.+.+..+
T Consensus       105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~l-Ga~~gp~~g~~lils  166 (422)
T COG0738         105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGL-GAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHh
Confidence            66677777888888888888888999988888888888888656555 999999999998873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=1.2e-07  Score=89.95  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=109.6

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhh
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ...++..++..+|.++.|.++||+|||     +.+..+.++..++.+.....++.+.+++.=++.|++..........+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk-----~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRK-----PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccH-----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            445777889999999999999999999     889999988888888888899999999999999999999999999999


Q ss_pred             hcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .|.+++++|+.+..+ ...... ++..++...+++..   +|+..++..........+..
T Consensus       197 ~E~~~~~~R~~~~~~-~~~~~~-~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~  251 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTL-GGFFFV-GGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLW  251 (521)
T ss_pred             eeecCcchhhHHHHH-HHHHHH-HHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999 566666 55667878888777   47777777766655554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.66  E-value=9.8e-08  Score=84.14  Aligned_cols=119  Identities=21%  Similarity=0.348  Sum_probs=98.3

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccch--hHHHHHHHHHhhhhhhhhcccccccccccCCC-CCch
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVGVGEASFISLAAPFIDDNAPV-PQKT   79 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~   79 (421)
                      +..+++++.|.++||+|||+.+..+.....++.+..++..+  .+.+++.|+++|++.+...+...+++.|+.|+ ++|+
T Consensus        51 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  130 (338)
T COG0477          51 GYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERG  130 (338)
T ss_pred             HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH
Confidence            44566789999999999999888888776666677777766  89999999999999999999999999999998 6789


Q ss_pred             hHHHHHHh-HHHHHhHHHHHHHHHhhcc--cchhHHHHHhHHHHH
Q 014646           80 AWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILML  121 (421)
Q Consensus        80 ~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~gwr~~f~~~~~~~~  121 (421)
                      ...+.... ...+|..+++.+++.+...  .+||+.|.+......
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (338)
T COG0477         131 LAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            99998888 5888889998877776643  579997777665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.65  E-value=1.7e-07  Score=84.64  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             hhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-chhHHHHH----HHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            7 ASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAI----CRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         7 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+    ...++|+..+..+.+...++.+..|++.|+++
T Consensus       259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~  338 (400)
T PF03825_consen  259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATA  338 (400)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHH
Confidence            34577899999999999999999999988888877 55444333    35579999999999999999999999999999


Q ss_pred             HHHHHh-HHHHHhHHHHHHHHHhhcccc------hhHHHHHhHHHHHHHHHHHHhccc
Q 014646           82 LSMFYM-CIPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVLAFVIKP  132 (421)
Q Consensus        82 ~~~~~~-~~~~G~~~g~~~~~~l~~~~g------wr~~f~~~~~~~~~~~~~~~~~~p  132 (421)
                      .++++. ..++|..+|..++|++.+++|      |...+.+.+++.++..++.+++.+
T Consensus       339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999876 468999999999999998765      445666666666665555555543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.9e-07  Score=84.39  Aligned_cols=145  Identities=19%  Similarity=0.286  Sum_probs=113.0

Q ss_pred             hccchh-hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHH
Q 014646          235 YHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS--SLYGFLALFTVGELLV  311 (421)
Q Consensus       235 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  311 (421)
                      +.++.. ...+.+....+.+++.+.++++.||+|.|     +++..+.++..+..++.....  +.+.+++.=++.|++.
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r-----~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR-----RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            444433 33445667889999999999999999999     888777777777666555443  3345566777788888


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVG  385 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      +..++....+..+-.|+++|++..++.....+. |.+++-++.|++.+...+|+..|++.+.+.++..++++..
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~-g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQL-GTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999655555 8888888999999984449999999988877776666543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.65  E-value=5.7e-08  Score=86.92  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      |-++.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|+.+-..+++|+..+..+.+..+|++...||+-|..+.
T Consensus       418 gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q  497 (618)
T KOG3762|consen  418 GEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQ  497 (618)
T ss_pred             chHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHH
Confidence            44556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-hHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcc
Q 014646           83 SMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  131 (421)
Q Consensus        83 ~~~~-~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  131 (421)
                      ++.+ ...++|--+|.+++|.+.+.++=|..|.+.++.+++..++...+-
T Consensus       498 ~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  498 GLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9875 456789999999999999999999999999988877766655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.64  E-value=4.7e-08  Score=85.22  Aligned_cols=117  Identities=13%  Similarity=0.104  Sum_probs=103.6

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      .+++++++|++.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|..+..+.++..+.+|+++-++.+|
T Consensus       301 A~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFg  380 (438)
T COG2270         301 AALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFG  380 (438)
T ss_pred             HHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceee
Confidence            46789999999999999999999999999999988888887788888899999999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcccc-hhHHHHHhHHHH
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  120 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~  120 (421)
                      +++...-.+..+||.+.+.+.+..| -|..+....++.
T Consensus       381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll  418 (438)
T COG2270         381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL  418 (438)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            9999999999999999998876443 566665555443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.63  E-value=6.1e-07  Score=82.57  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhh
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVC  322 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (421)
                      ....+..++.+++.+.++.+.||++-.     +.+....++-.+..++....++.+.+++.-++.|++.+..+|....++
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l  159 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL  159 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence            344778899999999999999999955     666666655555555555578888999999999999999999999999


Q ss_pred             hcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh-----hhhchhhhhhHHHHHHHHHHHHhh
Q 014646          323 LHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-----HVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..-+.+++|+.-+|+.+...+. |+++|+.+...+..     ...+|++.|++.+++.+...++.+
T Consensus       160 g~wy~~~e~g~r~~~~~a~~~~-g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  160 GNWYGKSERGLRMGIWYASASL-GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HhhcChhhhhhhHHHHHHhcch-hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            9999999999999999766555 88888877766532     123588999988877666665444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.63  E-value=3.4e-07  Score=83.19  Aligned_cols=131  Identities=14%  Similarity=0.008  Sum_probs=102.5

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc----hh--H---HHHHHHHHhhhhhh-hhcccccccccccCC
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DF--W---SIAICRMLVGVGEA-SFISLAAPFIDDNAP   74 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~--~---~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~   74 (421)
                      .+..+++..+.||+|||+.++.+..+..+..+++....    ..  |   ..+++.++..++.+ +..|...-+.+|.+|
T Consensus       319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~  398 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP  398 (485)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence            46778899999999999999999999988888776542    11  1   12334444444333 246777888999999


Q ss_pred             CCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhccccccc
Q 014646           75 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  136 (421)
Q Consensus        75 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~  136 (421)
                      ++.|..++++......+...+-......+.+..|- +.|+...++++...+..++.+||+..
T Consensus       399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            99999999999999998888877777777777665 78888888889999999999999653

>PRK09848 glucuronide transporter; Provisional

Probab=98.61  E-value=1.1e-07  Score=88.35  Aligned_cols=107  Identities=10%  Similarity=0.064  Sum_probs=89.6

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHhhhhhhhhcccccccccccCCCC----
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP----   76 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~----   76 (421)
                      +..++.++++++.||+|+|+++.++.++..++.+...+.+  +++.+++..++.|+|.+...+...++..|..|.+    
T Consensus       276 ~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~  355 (448)
T PRK09848        276 GTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLT  355 (448)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence            3456788999999999999999999998888877776654  6677777888999999999999999998888754    


Q ss_pred             ---CchhHHHHHHhHHHHHhHHHHHHHHHhhcccch
Q 014646           77 ---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  109 (421)
Q Consensus        77 ---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gw  109 (421)
                         ++|..++..+....+|..+|+.+.+.+.+..|+
T Consensus       356 g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        356 GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence               458999999999999999999998887654444

>PRK09669 putative symporter YagG; Provisional

Probab=98.58  E-value=1.8e-06  Score=80.22  Aligned_cols=149  Identities=17%  Similarity=0.035  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          211 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      +.....+.....+..|++.|+.+..+.++..... ..+.-+...+..++.|+++||.+.|..++++.+..+....++...
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            3334445555666788999999999999765533 355667788999999999999765544444666555444444443


Q ss_pred             HHHhhch------hHHHHHHHHHHHHHHhccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          290 TAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       290 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      +....++      .....+...+...+......+..++..+..++ ++|.+..+........ |..+++.+...+...
T Consensus        96 l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~-G~~i~~~~~~pl~~~  172 (444)
T PRK09669         96 LTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFI-GGLIVSVIALPLVDI  172 (444)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3333321      12223333344445555666667777776643 7888887877544444 666666544444433

>PRK11462 putative transporter; Provisional

Probab=98.58  E-value=3.2e-06  Score=78.62  Aligned_cols=151  Identities=13%  Similarity=0.042  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHH-HhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          211 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF-GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      +.-+..+........|+..|+.+..+.++..... ..+.-+...+.-++.|+++||...|..++|..+..+....++.+.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            3344455666677788999999999999755533 345557778889999999998766655555666666555555554


Q ss_pred             HHHhhch------hHHHHHHHHHHHHHHhccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          290 TAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       290 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      +++..++      .....+...+...+......|..++..+..++ ++|++.++........ |..+++.+...+.+..|
T Consensus        96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~i-G~~~~~~~~~plv~~~g  174 (460)
T PRK11462         96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATA-GGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence            4443331      12233344445566666777778888887775 7999999988544444 76666666555544433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.57  E-value=4.1e-06  Score=69.67  Aligned_cols=126  Identities=10%  Similarity=0.059  Sum_probs=92.4

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-------chhHHHHHHHHHhhhhhhhhcccccccccccCCC
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPV   75 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~   75 (421)
                      |..+ +++.|.+.|++|++.++.+|.+...+|..+..++       .++|.+.+..++.|.+.+....++.....+.+|.
T Consensus        49 G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   49 GSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             Hhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            4444 4788999999999999999999999988876543       4688888889999988887777777777788885


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                       +||.+.++.-...+++..+-..+...+.+.-.-+..+++...+.++..+..++.
T Consensus       128 -~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  128 -SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             -ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence             699999999999999887766666555544333444444433343433344444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.56  E-value=6.6e-05  Score=69.14  Aligned_cols=229  Identities=14%  Similarity=0.122  Sum_probs=129.1

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc---------ch----------------------hHHHHHHHHH
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------FD----------------------FWSIAICRML   53 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~----------------------~~~l~~~r~l   53 (421)
                      .+...+..+++|+++|.+++-+....+.....+.++.         ++                      .|.+.+.-+.
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            3456678999999999999877776666655555542         11                      1111111122


Q ss_pred             hhhhhhhhcc-cccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc---------ccchhHHHHHhHHHHHHH
Q 014646           54 VGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------HLNWRYAFWGEAILMLPF  123 (421)
Q Consensus        54 ~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~~gwr~~f~~~~~~~~~~  123 (421)
                      .-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.+         ...|...+.......++.
T Consensus       153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~  232 (491)
T PF03219_consen  153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLIL  232 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHH
Confidence            2222222222 346788999999999999999999999999999988888776         224654332222111111


Q ss_pred             HHHHH---hcccccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhh
Q 014646          124 AVLAF---VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  200 (421)
Q Consensus       124 ~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  200 (421)
                      .++..   ....+....  +++..+..                         ..  .+++       +......++++.+
T Consensus       233 g~~i~~~~~~~~~~vl~--~~~~~~~~-------------------------~~--~kk~-------k~k~s~~es~k~l  276 (491)
T PF03219_consen  233 GIVIILLYRYMNKNVLT--DPRFYPSA-------------------------KK--KKKK-------KPKMSLKESFKLL  276 (491)
T ss_pred             HHHHHHHHHHHHHHccC--ccccchhh-------------------------hc--cccc-------CCCccHHHHHHHH
Confidence            11111   111111000  00000000                         00  0000       1122334678889


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh-H---HHHhhHhHHHHHHHhHHHHHHHhhccc
Q 014646          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD-M---MFGGVTIVCGIVGTISGGFILDQMGAT  269 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~g~l~d~~~~~  269 (421)
                      +++|.+..+++...+++...+.+..-.....++.+..+..- .   .+....++..++..++++.+.+|+|-+
T Consensus       277 ~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  277 LKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999888888887777766665555555555433221 1   222444555555667778888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=98.56  E-value=2.5e-07  Score=81.03  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=91.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      .++.++.+..+++.||+|+||++.++..+..++.++....++...+ ..-++.|++.+..+|...+...+..|++ .+++
T Consensus       189 ~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~a  266 (310)
T TIGR01272       189 GGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQG  266 (310)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhh
Confidence            3577899999999999999999998888888877666655544333 3556889999999999999998888765 5566


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHH
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAI  118 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~  118 (421)
                      .++. ....+|..++|.+.|.+.+..|.+..|++..+
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence            6775 56668999999999999998899988885543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.53  E-value=2e-06  Score=79.95  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=109.5

Q ss_pred             HhhhHHHHhhccch-hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHH-
Q 014646          226 WGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL-  303 (421)
Q Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  303 (421)
                      +.+.+.++ ++.+. +..+..++......+..++.+.+.||+|.|     ...+.+.++....+++..+..+.+.+++. 
T Consensus        68 ~~~~~~~~-f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R-----~v~i~G~~v~~~g~~lssF~~~i~~l~lt~  141 (509)
T KOG2504|consen   68 LFEELMDY-FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR-----TVMIAGGLVAALGLLLSSFATSLWQLYLTF  141 (509)
T ss_pred             hHHHHHHH-hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34444443 44443 334556667777788889999999999999     88888888888888888888877665544 


Q ss_pred             HHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          304 FTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      -.+.|++.+..+.+...++.. +.+++|+.++|+.....+ +|.++-|.+.-++.+..| |+..++..+.+.+..+....
T Consensus       142 gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG-~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~  218 (509)
T KOG2504|consen  142 GVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTG-VGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGA  218 (509)
T ss_pred             HHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCC-cceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777766664 568999999999954444 477877888888888877 77888877777655555544


Q ss_pred             hhe
Q 014646          384 VGI  386 (421)
Q Consensus       384 ~~~  386 (421)
                      ..+
T Consensus       219 ~~r  221 (509)
T KOG2504|consen  219 LLR  221 (509)
T ss_pred             HcC
Confidence            333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.52  E-value=3.8e-06  Score=78.61  Aligned_cols=147  Identities=8%  Similarity=0.006  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 014646          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+..+..+.....+..|++.|+.+..+.++... ....+.-+...+..++.|+++||...|..++++.+..+....++.+
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            344455566677778889999999989886555 3335566777888999999999653332222355555555555554


Q ss_pred             HHHHhhch------hHHHHHHHHHHHHHHhccccchhhhhhcccC-cchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          289 LTAFCLSS------LYGFLALFTVGELLVFATQAPVNYVCLHSVK-PSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       289 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+++..++      .....+...+...+......+..+...+..+ +++|.+..+......+. |+.+.+.+...+
T Consensus        92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i-g~~~~~~~~~~~  166 (473)
T PRK10429         92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL-AGFVTAGFTLPF  166 (473)
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            44443221      1122333334455666677777788888774 58999988885444444 444444444333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.50  E-value=0.00021  Score=64.34  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=40.5

Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV  361 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~  361 (421)
                      .+..+.....+....+.-++..+|..-|+.|.+.|+..|. |+-.-..+.=++.|.+
T Consensus       413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL-GGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL-GGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc-CCCchHHHHHHHhhhc
Confidence            3344444455666677777888899999999999999998 7666555656666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=2.3e-06  Score=80.91  Aligned_cols=133  Identities=16%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             HHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhh
Q 014646          242 MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYV  321 (421)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (421)
                      ..+.+...++..++.++.|+++|++|||     ..+..+.+...+..++.....+...+.+.=++.|++.+........+
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence            3666788899999999999999999999     88888888888888888888898889999999999999888888999


Q ss_pred             hhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhh-hchhhhhhHHHHHHHHHHHH
Q 014646          322 CLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV-NNWRKTTLALTSIFFLAAGI  381 (421)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~  381 (421)
                      ..|..|++.||...+..+.... +|..++ .+.+...++. .+|+..+....+..+...+.
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~-~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFIT-IGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHH-HHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976666 476665 4555555432 23665555544444433333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.44  E-value=6.8e-07  Score=83.16  Aligned_cols=106  Identities=11%  Similarity=0.019  Sum_probs=90.9

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc----------chhHHHHHHHHHhhhhhhhhccccccccccc
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------FDFWSIAICRMLVGVGEASFISLAAPFIDDN   72 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~   72 (421)
                      +.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+...-++.+++.+........++.+.
T Consensus       300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~  379 (468)
T TIGR00788       300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARL  379 (468)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHh
Confidence            456788889999999999999999999999988664311          3444555677889999999999999999999


Q ss_pred             CCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhcccc
Q 014646           73 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  108 (421)
Q Consensus        73 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g  108 (421)
                      .|+++++...++.+...++|..+++.+++.+.++.|
T Consensus       380 ~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       380 CPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999987666

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.42  E-value=1.6e-06  Score=80.20  Aligned_cols=148  Identities=15%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhccchhhHH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Q 014646          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (421)
                      +...........+++.|+.+..+.++.... ...+..+...+..++.|.++||...|..+++..+..+....++...++.
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf   90 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF   90 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence            444555556667888889999898865443 3345557777888899999994333322223555555555555555444


Q ss_pred             hh-c-------hhHHHHHHHHHHHHHHhccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          293 CL-S-------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       293 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      .. +       ......+..++...+......+..++..+..++ ++|.+..+..+..... |..+...+.+.+.+..+
T Consensus        91 ~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~-g~~l~~~~~~~l~~~~g  168 (428)
T PF13347_consen   91 SPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMI-GSLLASFLAPILVSWFG  168 (428)
T ss_pred             ccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHH-HHHHHHHHhhhhhhhhc
Confidence            33 2       111224444455667777777888888888875 6899999988554444 66555556666665554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.41  E-value=3.4e-06  Score=76.29  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccc---h------hHHHHHHHHHhhhhhhhhcccccccccccCCCC---CchhHHHHHHhHH
Q 014646           22 RLIGVGLSVWTFATAGCGSSF---D------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI   89 (421)
Q Consensus        22 ~~l~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~   89 (421)
                      |+++++.++..+|.++..++.   +      .+.++++-++.++|.|+.-|...++.+|.++++   +|.+.+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            577888888888888844432   2      367888999999999999999999999999876   3667889999999


Q ss_pred             HHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           90 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        90 ~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++|..+++.+.+++.+++||.+.|.+.++..++..+..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999988776655544443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.40  E-value=1.9e-08  Score=93.71  Aligned_cols=126  Identities=13%  Similarity=0.108  Sum_probs=94.0

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHhccccchh
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---SLYGFLALFTVGELLVFATQAPVN  319 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  319 (421)
                      ...+...++..+|+++.|++.||+|||     +.+..+..+..+..++....+   +.+.+.+.-++.|++.+...+...
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRK-----PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHhhhccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345677789999999999999999999     777777777777776666666   777778788888999998899999


Q ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh---chhhhhhHHHHHH
Q 014646          320 YVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN---NWRKTTLALTSIF  375 (421)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~---~~~~~~~~~~~~~  375 (421)
                      .++.|..|+++|+...++.+.... +|..++..+.-.+ ....   .|+..+.+..+..
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~-~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~  181 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWA-LGILLASLIGYIV-SYYSDNWGWRILLIFGAIPS  181 (451)
T ss_pred             cccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccc
Confidence            999999999999999999865544 4777766443322 2222   2555555544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.37  E-value=0.00011  Score=69.31  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=97.4

Q ss_pred             chhhHHHhhhhhc-CchHHHHHHHHHHHHHHhhhcccch-------------------------hHHHHHHHHHhhhhhh
Q 014646            6 VASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD-------------------------FWSIAICRMLVGVGEA   59 (421)
Q Consensus         6 ~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~r~l~G~~~~   59 (421)
                      ...+.++.++|-| ||-+++.++.++..++.++..++..                         ...++...-+..+|.|
T Consensus        88 ~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~g  167 (571)
T KOG1237|consen   88 LLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAG  167 (571)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccC
Confidence            3457899999975 9999999999998888655443211                         2356667777888999


Q ss_pred             hhcccccccccccCC---CC---CchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           60 SFISLAAPFIDDNAP---VP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        60 ~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      +.-|...+.-+|-++   ++   ++...+.++....+.|..++..+-.+..++.+|.+.|.+..+..++..++.+..
T Consensus       168 g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  168 GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            999999999999998   32   234688899999999999999998888888999999999988766555554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.35  E-value=1.6e-05  Score=71.84  Aligned_cols=154  Identities=18%  Similarity=0.049  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHH-hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 014646          208 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFG-GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  286 (421)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  286 (421)
                      .....-+..+........|+..|+.+..|.++...... .+.-+...+.-++.|.++||..+|+.+.|..++...+..++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            33444556666777788899999999999997555333 44446778888999999999888777777777777666666


Q ss_pred             HHHHHHhhc------hhHHHHHHHHHHHHHHhccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          287 SCLTAFCLS------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       287 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+.+.+..+      ......+...+.+.+......|..++..+..++ ++|.+..+.-..+... |..+...+.+.+.+
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~-g~~l~~~~~~plv~  174 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL-GGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            655555444      233344455566677777777777777777665 7999999988554444 76666666666666


Q ss_pred             hhh
Q 014646          360 HVN  362 (421)
Q Consensus       360 ~~~  362 (421)
                      ..+
T Consensus       175 ~~g  177 (467)
T COG2211         175 LFG  177 (467)
T ss_pred             HhC
Confidence            554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.34  E-value=5.8e-05  Score=65.13  Aligned_cols=304  Identities=11%  Similarity=-0.015  Sum_probs=153.4

Q ss_pred             hHHHhhhh-----hcCchHHH------HHHHHHHHHHHhhh------cccchhHHHHHHHHHhhhhhhhhcccccccccc
Q 014646            9 PIFASLAK-----SHNPFRLI------GVGLSVWTFATAGC------GSSFDFWSIAICRMLVGVGEASFISLAAPFIDD   71 (421)
Q Consensus         9 ~~~g~l~d-----r~Grr~~l------~~~~~~~~~~~~~~------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~   71 (421)
                      ++|.++.|     |+||||.-      ++|.++..++...-      +-.++...+...-++.-+..+.-..+.-.+.-.
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt  160 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT  160 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            57889999     99999852      33333333333221      112344444444455666666666666666666


Q ss_pred             cCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc-------ccchh---------HHHHHhHHHHHHHHHHHHhcccccc
Q 014646           72 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWR---------YAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        72 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      +..+++.|-+......+.+.|..++..+.-.+.+       ..+|.         ...+..+.+.++...+..+...|. 
T Consensus       161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~-  239 (510)
T KOG3574|consen  161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEN-  239 (510)
T ss_pred             hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            7778888877777777777776666554322222       11222         112233333333333333332111 


Q ss_pred             cccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHH
Q 014646          136 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  215 (421)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  215 (421)
                           +++..+.                         .+             ...++..+-++++++-|....+......
T Consensus       240 -----~~~~~~e-------------------------~~-------------~~i~~~yk~l~~vLklk~v~~la~i~lt  276 (510)
T KOG3574|consen  240 -----DESVDEE-------------------------LE-------------LGIHESYKLLRDVLKLKSVRWLAGILLT  276 (510)
T ss_pred             -----chhhhhh-------------------------hh-------------cCHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence                 1110000                         00             1112223445666777777766666666


Q ss_pred             HHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcc--cccch-hhHHHHHHHHHHHHHHHHH
Q 014646          216 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA--TISNA-FKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~  292 (421)
                      .-.++.+-....+.-+.|+ |.+.......   .+..++..+..+....|+-.  |.... .+.+..=.........+..
T Consensus       277 ~K~gf~a~da~t~LkLle~-Gv~ke~Lal~---~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~  352 (510)
T KOG3574|consen  277 GKLGFQAADALTSLKLLEH-GVPKEELALI---AVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVW  352 (510)
T ss_pred             HHHHhhhhhhccchHHHHc-CCChhHheee---eeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHh
Confidence            6666666666666666664 4443222221   23344444555555444422  21110 0001111111111111111


Q ss_pred             hhch------------hHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          293 CLSS------------LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       293 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      ..++            ....+....+.+.+....+....+..++..+|...|+.+.+.|+..+. |+-.=..+..++.|.
T Consensus       353 ~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL-Gg~wp~tv~l~l~D~  431 (510)
T KOG3574|consen  353 WTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL-GGNWPGTVALWLADG  431 (510)
T ss_pred             hhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh-cCCcHHHHHHHhccc
Confidence            1111            111122233444444455556677888888999999999999998888 666555677888876


Q ss_pred             h
Q 014646          361 V  361 (421)
Q Consensus       361 ~  361 (421)
                      +
T Consensus       432 l  432 (510)
T KOG3574|consen  432 L  432 (510)
T ss_pred             C
Confidence            5

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.26  E-value=0.0016  Score=58.73  Aligned_cols=230  Identities=16%  Similarity=0.079  Sum_probs=126.5

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc---------ch-----------------------hHHHHHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---------FD-----------------------FWSIAICR   51 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r   51 (421)
                      ..+..++.+++.+++.+.+++-.-+..+....+++++.         ++                       .|...+.-
T Consensus        75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y  154 (509)
T COG3202          75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY  154 (509)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence            45677888999999999999888877777777776653         11                       01111111


Q ss_pred             HHhhhhhhhhcc-cccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhccc-c---------hhHHHHHhHHHH
Q 014646           52 MLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-N---------WRYAFWGEAILM  120 (421)
Q Consensus        52 ~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-g---------wr~~f~~~~~~~  120 (421)
                      .+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++..+. .         -+..+.+.+..+
T Consensus       155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~  234 (509)
T COG3202         155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILG  234 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHH
Confidence            111111122222 23456778888899999999999999999999999888887521 1         233444444433


Q ss_pred             HHHHHHHHhcccccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhh
Q 014646          121 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  200 (421)
Q Consensus       121 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  200 (421)
                      ++...+..+.-....+......+++..                             ++++       .......++++.+
T Consensus       235 ~i~~~l~~~~~r~il~~~~f~~~~~~k-----------------------------k~~~-------k~k~~~~~s~k~i  278 (509)
T COG3202         235 IIAILLYRYINRNVLTDPLFYLRAKKK-----------------------------KKKK-------KLKLGLIESFKMI  278 (509)
T ss_pred             HHHHHHHHHHHhhcccCcchhHHHhcc-----------------------------cccc-------cccCcHHHHHHHH
Confidence            333333332211111110000000000                             0000       1112334678888


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh-hH---HHHhhHhHH-HHHHHhHHHHHHHhhccc
Q 014646          201 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM---MFGGVTIVC-GIVGTISGGFILDQMGAT  269 (421)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~~g~l~d~~~~~  269 (421)
                      .++|.++.+.+...+++.+.+.+..---.-.++.+..... ..   .+....++. .++....++.+.+|.|-.
T Consensus       279 ~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         279 LRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence            9999999988888888877766654332223332322211 11   122233333 344556777788887764

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.26  E-value=4.8e-05  Score=65.49  Aligned_cols=143  Identities=15%  Similarity=0.096  Sum_probs=109.5

Q ss_pred             HhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          233 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +..+.+.... .++.++.++..+.+++..++.+|+|.+     +.+..+.++..+...+=... +.+..+....+.+.+.
T Consensus        40 ~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e-----r~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gI  113 (395)
T COG2807          40 QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE-----RSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGI  113 (395)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH-----HHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhH
Confidence            3455664444 667888888889999999999999988     66666665555555443333 5566677778888888


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +..+...+..+.+.+ |++.+..+|++....+. ++.+++.+...+.++.++|+....+.+...+++.+.++
T Consensus       114 av~nVLLPslIK~~F-pk~~~~mtglYs~sl~~-~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         114 AVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGA-GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             HHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHH-HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888887 46678999999888877 77888888888888877798888888888777777665

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.25  E-value=5.8e-06  Score=68.28  Aligned_cols=120  Identities=15%  Similarity=0.114  Sum_probs=85.4

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHH-HHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTF-ATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ++.+++.|.++||+|++-..+.+..+..+ +-....|  +++.=++...+.|++.+.........++...|+++.|++.+
T Consensus       314 av~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTayg  391 (459)
T KOG4686|consen  314 AVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYG  391 (459)
T ss_pred             hhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHH
Confidence            56789999999999999887666554443 3333333  23333456677888877666556677888889999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHhhcccc---hhHHHHH-hHHHHHHHHHH
Q 014646           84 MFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWG-EAILMLPFAVL  126 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l~~~~g---wr~~f~~-~~~~~~~~~~~  126 (421)
                      ..+...++|..+.|++++.+.++-|   |--.|++ .+.+++....+
T Consensus       392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi  438 (459)
T KOG4686|consen  392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI  438 (459)
T ss_pred             HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997544   5444444 44444433333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.24  E-value=3.2e-05  Score=64.47  Aligned_cols=123  Identities=11%  Similarity=0.124  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh---
Q 014646          219 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL---  294 (421)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  294 (421)
                      ..+.+..|.|. +++..+.++.+. .+.....++..+ .+..|.+.|++|.+     ..+.++..............   
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            35566666665 456788887665 444555666665 58889999999987     66666665555554433321   


Q ss_pred             ----chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCC
Q 014646          295 ----SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVP  349 (421)
Q Consensus       295 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  349 (421)
                          .+.|......++.+.+.............+.+| ++||++.|+.-...+.-+++.
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~  147 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIF  147 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHH
Confidence                122333333333333333333444455556775 689999999977777634333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.23  E-value=4.8e-06  Score=63.78  Aligned_cols=99  Identities=10%  Similarity=0.156  Sum_probs=86.1

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS   83 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~   83 (421)
                      ..+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..++..-.++.+..++++|++..+
T Consensus        50 ~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen   50 FAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG  128 (156)
T ss_pred             HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence            46778889999999999999999999998655443 56778899999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhHHHHHHHHHh
Q 014646           84 MFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        84 ~~~~~~~~G~~~g~~~~~~l  103 (421)
                      ++......+.++|.++.-.+
T Consensus       129 ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  129 IFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99888888888887765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.12  E-value=2.6e-06  Score=75.19  Aligned_cols=132  Identities=11%  Similarity=-0.034  Sum_probs=100.2

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchh----HHHHHHHHHhhh-hhhhhcccccccccccCCCCC
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF----WSIAICRMLVGV-GEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++.-|-.+...+.|+.|||++.+.|.+++++..+..+...|-    ..+++.-.+..+ +.-+.......+-+|.+|.+-
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv  439 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV  439 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence            344566777889999999999999999999999998888761    112222222222 222233445667799999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhc-----ccchhHHHHHhHHHHHHHHHHHHhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      |+...|+..+..-.|.++|.....++.+     ..+-|+.|++.+.+.++..+..+++ ||+.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            9999999999999999999999999988     7789999999998877665555544 6654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.10  E-value=0.00038  Score=63.76  Aligned_cols=55  Identities=13%  Similarity=0.038  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCch
Q 014646          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +.+..++...+.++..|-..+....+..+.+++++|..+..+.+.+... |-.+|.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~-Gl~~Gs  425 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLV-GLALGA  425 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4555666677777777766666677777888888888888777554444 655555

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.04  E-value=8.1e-05  Score=67.61  Aligned_cols=136  Identities=11%  Similarity=0.079  Sum_probs=77.0

Q ss_pred             HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH---hhc--hhHHHHHHHHHHHHHHhccccc
Q 014646          243 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF---CLS--SLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      ...+...++..+++++.|++..|.+.-+    +.++.+.+++.+..++..   ..+  ..+..++.-.+.|++. .....
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k----~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~  149 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVK----KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAV  149 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcc----cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHH
Confidence            3345677888999999999999988521    445555555555444432   122  2333333333443332 33445


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh------------hhhchhhhhhHHHHHHHHHHHHhhh
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD------------HVNNWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      .-.++++..-+++|.++++..+. ...+|.++||.+...+..            .++.|..+-++.++..+...++...
T Consensus       150 lR~Y~a~~s~~~dR~rA~a~~~~-~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  150 LRAYIADASTVEDRPRAFAATSG-GFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHhccCccchHHHHHHhhh-HHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            57777776667888888888744 333466666654433321            1124555666666665555555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.94  E-value=0.00017  Score=63.53  Aligned_cols=111  Identities=16%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             hhHhHHHHHHHhHHHHHHHhhc-----ccccchhhHHHHHHHHHHHHHHH-----HHhhc-------hhH----HHHHHH
Q 014646          246 GVTIVCGIVGTISGGFILDQMG-----ATISNAFKLLSAATFLGAISCLT-----AFCLS-------SLY----GFLALF  304 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------~~~----~~~~~~  304 (421)
                      .+..+.+ +.+...|+.+|+.+     ||.+    .+.............     .....       +.+    .....+
T Consensus        22 al~~~~a-p~R~~~G~~SD~~~s~~G~rRtP----yI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F   96 (403)
T PF03209_consen   22 ALHYLVA-PLRVWFGHRSDTHPSILGWRRTP----YIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAF   96 (403)
T ss_pred             HHHHHHH-HHHHHhccccccCcccCcCCchh----hhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHH
Confidence            3344333 46888999999988     6643    222222222221111     11111       222    223445


Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN  362 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~  362 (421)
                      .+.|.+......+..++..|..|+++|+++.++...+.- +|.+++..+.|.+.|.+.
T Consensus        97 ~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli-~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   97 LLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLI-VGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             HHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHccccC
Confidence            556677777788889999999999999999999965554 499999999999988654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.86  E-value=0.00042  Score=66.70  Aligned_cols=159  Identities=12%  Similarity=-0.010  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhh-cccccchhhHHHHHHHHHHHHHHHHHhhc--
Q 014646          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAFKLLSAATFLGAISCLTAFCLS--  295 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  295 (421)
                      ++++...+..|+.+..+.+...+ ..........-+..+++|+++|++ |++     +.+....++..++..++....  
T Consensus         3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~-----~tIl~~~ii~~lG~~llai~a~~   77 (654)
T TIGR00926         3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF-----KTILYLSIVYVVGHALLSFGAIP   77 (654)
T ss_pred             eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhccCc
Confidence            44555666667777777765433 222223333345577889999975 665     555555555444444333221  


Q ss_pred             ------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcc---hhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh----
Q 014646          296 ------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN----  362 (421)
Q Consensus       296 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~----  362 (421)
                            .....+..+.+...+.+..-+...+...+.++++   .+.+...+.....+. |+.+++.+.+++.+..+    
T Consensus        78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccc
Confidence                  1123445666677777777788888888877653   466677777667777 88888888888875542    


Q ss_pred             --chhhhhhHHHHHHHHHHHHhhh
Q 014646          363 --NWRKTTLALTSIFFLAAGIWFV  384 (421)
Q Consensus       363 --~~~~~~~~~~~~~~~~~~~~~~  384 (421)
                        +|..+|.+.+++++++.+++..
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHH
Confidence              3556666666666666655543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.85  E-value=0.00097  Score=57.96  Aligned_cols=144  Identities=15%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             HhhccchhhHH-HHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          233 NIYHMSNADMM-FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       233 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +.++.++.+.. +.....+.+.+...+.|.+.||+|||     +.++...++..+.++.-. .++.+..++.=++.|...
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            45777765553 33445566777888889999999999     888777777777775433 455666666666777776


Q ss_pred             hccccchhhh-hhcc----cCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhc-hhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYV-CLHS----VKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNN-WRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~  382 (421)
                      ...+...-++ +.|.    +|++..+...+......+.+-++.+..+..++.|..+. ...+|.....+.+++.++.
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I  212 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI  212 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            6666555333 3332    44455555555443233332334445455566665542 3456666666555554443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.71  E-value=0.00091  Score=61.51  Aligned_cols=121  Identities=15%  Similarity=0.072  Sum_probs=80.9

Q ss_pred             hHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCc
Q 014646          249 IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       249 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                      ++..++.+...|.++|++|||     ..+......+.+......+.. +| ..+...+ ..+.........+++++....
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk-----~~L~~~~~~~~l~~~~~~~~~-~~-~~~~~~l-~g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK-----VVLLLPLFGTILPALCLLFQG-YW-FFLLLGL-SGGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh-----hhHHHHHHHHHHhHHHHHHHH-HH-Hhhhccc-ccchhhhhhhhhhheeeccch
Confidence            566778888999999999998     555555544444444333333 22 2222222 223335566678889999988


Q ss_pred             chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      +.|....|+.+...+. +..++|.+.+.+.+..+ +...+.+..+..+...
T Consensus       144 ~~R~~~~gll~~~~~~-~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~  192 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGA-GLVIGPALGGYLVKFLG-IALVFLIAAASGILSL  192 (463)
T ss_pred             hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHH
Confidence            9999999999877777 77889999999988855 5455555555444433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.69  E-value=0.0011  Score=54.74  Aligned_cols=55  Identities=11%  Similarity=0.050  Sum_probs=36.9

Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHh---h--cccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVV---G--SHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~--~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      |+|+....+...+.++|.++.-...-.-   .  -.-+|++++.+.+++.++..++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5577777777788888887755432221   1  12259999999998877766666555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.61  E-value=0.00046  Score=57.95  Aligned_cols=120  Identities=8%  Similarity=-0.117  Sum_probs=78.3

Q ss_pred             hHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhH
Q 014646            9 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC   88 (421)
Q Consensus         9 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~   88 (421)
                      +....+.||+---.=+.+..++.+.+.++.+++++.++=+.+-.+..++.|.....-.++- ..+++    ...+.++.+
T Consensus        80 l~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ls-s~Y~~----~~i~~WSSG  154 (409)
T KOG3880|consen   80 LTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALS-SRYPS----IVIAGWSSG  154 (409)
T ss_pred             HhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhh-ccCCC----ceeccccCC
Confidence            4445567776433334555667788889999999999988888888888886554443333 33333    345566666


Q ss_pred             HHHHhHHHHHHHHHhhc--ccchhHHHHHhHHHHHHHHHHHHhcccc
Q 014646           89 IPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        89 ~~~G~~~g~~~~~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      .+.+.++|..--..+.+  ..+-|...++...+.++.+...++.+++
T Consensus       155 TGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  155 TGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            66666666654444444  3457888888877777777777776643

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.48  E-value=0.0081  Score=53.85  Aligned_cols=152  Identities=10%  Similarity=-0.064  Sum_probs=90.1

Q ss_pred             HHhhhHHHHh-hccchhhHHHHhhH--hHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014646          225 YWGPKAGYNI-YHMSNADMMFGGVT--IVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  301 (421)
Q Consensus       225 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (421)
                      .|+..|+.+. .+.+..+..--..+  .=..++..+....+.|.++.|     ..++...+...+...++.+.++....-
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-----pviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-----PVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            4566677766 67775443211111  122344566777899999988     777777777677667777777777666


Q ss_pred             HHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhh-hhchhhhhhHHHHHHHHHHH
Q 014646          302 ALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDH-VNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~  380 (421)
                      +.-+..|..... -...++++-..+++++--++.+..... ..+|..++..++..+... ..+|.....+......++.+
T Consensus        99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa-~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~  176 (412)
T PF01770_consen   99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAA-TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL  176 (412)
T ss_pred             HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            666666555543 444567777788888777888777543 333766666555544442 12343443444333334444


Q ss_pred             Hhh
Q 014646          381 IWF  383 (421)
Q Consensus       381 ~~~  383 (421)
                      ..+
T Consensus       177 ~~~  179 (412)
T PF01770_consen  177 IAL  179 (412)
T ss_pred             HHH
Confidence            333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.40  E-value=0.0022  Score=57.21  Aligned_cols=121  Identities=19%  Similarity=0.213  Sum_probs=67.1

Q ss_pred             HHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh--c---hhHHHHHHH
Q 014646          230 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL--S---SLYGFLALF  304 (421)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~  304 (421)
                      +.++.++.+....++..++.+.+++..+.+.|+.||+|-|     ..........++...+=...  +   +.... .+.
T Consensus        70 ~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR-----~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~  143 (480)
T KOG2563|consen   70 YVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR-----TALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLT  143 (480)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchH-----HHHHHHHHHHHHHHHHhhhccCccccccchh-hhh
Confidence            4555566444445667888899999999999999999998     66555555555544332211  1   11111 122


Q ss_pred             HHHHHHHhccccch----hhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          305 TVGELLVFATQAPV----NYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       305 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      ..+....+..++-.    .-+...-+++++|+++..+..+...+ |.+++..+-+.+
T Consensus       144 ~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~L-Gvavg~llppil  199 (480)
T KOG2563|consen  144 HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPL-GVAVGFLLPPIL  199 (480)
T ss_pred             HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchH-HHHHHhhcccee
Confidence            22222222222211    22334457889999999988444333 544444333333

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.37  E-value=0.0024  Score=42.47  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhccc
Q 014646          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  269 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~  269 (421)
                      -..+++.......+.-|+|.|+++ .|.++.+. .+..+..+..+++.++.|.++||.+++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            344566677778888899999987 66776555 455777788999999999999999998

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.31  E-value=0.017  Score=44.47  Aligned_cols=101  Identities=6%  Similarity=-0.090  Sum_probs=74.3

Q ss_pred             hhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcc
Q 014646          246 GVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHS  325 (421)
Q Consensus       246 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (421)
                      .+......++.++.+.+.+++|.|     +.++++.+...+..... ..++.+..+....+.|++.+..+.....++.+.
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K-----~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPK-----WSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            445566677788889999999998     77766666555444433 345667777788889999999998888888888


Q ss_pred             cCcchhHHHHHHHHHHHHHhccCCchhH
Q 014646          326 VKPSLRALSMAISTVSIHIFGDVPSSPL  353 (421)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~  353 (421)
                      ..++.+++-.++.....+. +.++|..+
T Consensus       118 s~~~~~~~~~~ifw~i~~~-s~i~G~~~  144 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQS-SLIFGNLF  144 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHH-HHHHHHHH
Confidence            7778899988888655554 65555543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.28  E-value=0.0035  Score=57.79  Aligned_cols=150  Identities=14%  Similarity=0.005  Sum_probs=84.7

Q ss_pred             hhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc----hhHHHHH
Q 014646          228 PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS----SLYGFLA  302 (421)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  302 (421)
                      ..++++.++.++.+. .+..+..+.- ...++.|.++|-+.-...+++..++.+.+++....+.+...+    +.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            346778888886544 2223322222 346788999998752211222445555555543333332222    3334444


Q ss_pred             HHHHHHHHHhccccchhhhhhcccCc--chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHH
Q 014646          303 LFTVGELLVFATQAPVNYVCLHSVKP--SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAG  380 (421)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  380 (421)
                      ++.+..++........-..+.|....  +.++.-.+....... +|++++..+.|.+.+..+ ++..|.+.+.+..+..+
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~-~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~~  169 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRS-VGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLMLI  169 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHHH
Confidence            44555555555555556666665533  237777777754444 488889989999998865 55667666555444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.00  E-value=0.083  Score=48.29  Aligned_cols=172  Identities=14%  Similarity=0.039  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchh-hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHH--HHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS--AATF  282 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~--~~~~  282 (421)
                      .+.+....++..+..-...+-.|.++.+.+..+-. ...+.....+..++.+...|.+.||..|.+..+..+..  ....
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            34455666777777777777888888888655522 22444555566677778888999998876322111111  1222


Q ss_pred             HHHHHHHHHHhhch-----hHHHHHHHH---HHHHHHhcccc-----chhhhhhccc--CcchhHHHHHHHHHHHHHhcc
Q 014646          283 LGAISCLTAFCLSS-----LYGFLALFT---VGELLVFATQA-----PVNYVCLHSV--KPSLRALSMAISTVSIHIFGD  347 (421)
Q Consensus       283 ~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~g~  347 (421)
                      +++..+........     .+....++.   +.+........     .--.++....  +++...+.++... -...+..
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR-RIDL~ck  162 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR-RIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH-HHHHHHH
Confidence            22222222222111     122221111   11111111111     1111111122  2344555555552 3344577


Q ss_pred             CCchhHHHHhhhhhhchhhhhhHHHHHHHHHH
Q 014646          348 VPSSPLVGVLQDHVNNWRKTTLALTSIFFLAA  379 (421)
Q Consensus       348 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  379 (421)
                      +++|.+.|.+.+..+ ......+.++..++..
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHH
Confidence            899999999998765 4444444444444444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.94  E-value=0.00012  Score=69.03  Aligned_cols=133  Identities=11%  Similarity=0.015  Sum_probs=1.3

Q ss_pred             HHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc---
Q 014646          220 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS---  295 (421)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  295 (421)
                      .+++..-.-.-+++.++.+..+. .+.+..-++.++..++..++.+|..|.     +++..+.++.++..++....+   
T Consensus        18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp-----rwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP-----RWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----ceeeecHHHHHHHHHHHhccHhhc
Confidence            33333333334667788876555 444666788888888878887775544     555444444444433322100   


Q ss_pred             -------------------------------------------h----hHHHHHHHHHHHHHHhccccchhhhhhcccCc
Q 014646          296 -------------------------------------------S----LYGFLALFTVGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       296 -------------------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                                                                 .    ...+++..++.|++....++...+++-|.+++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence                                                       0    11122233334444444555556777777877


Q ss_pred             chhHHHHHHHHHHHHHhccCCchhHHHHhh
Q 014646          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      +..+...|+.. ....+|-++|-.+++...
T Consensus       173 ~~splYiGi~~-~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  173 KNSPLYIGILY-AMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ------------------------------
T ss_pred             ccCccchhhhh-HHhhccHHHHHHHHHHHH
Confidence            78788888874 444446555554545443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.0076  Score=53.98  Aligned_cols=149  Identities=10%  Similarity=-0.012  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA  285 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  285 (421)
                      ........+...++...-..|.|.|+++.+-............-+.+++..++.|..+||...|..++|..+....+...
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            33334444555666666778899999885544332223333344566777888999999765554444455555444444


Q ss_pred             HHHHHHHhhc-----------------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHH-HHHHHHHHHHHhcc
Q 014646          286 ISCLTAFCLS-----------------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRAL-SMAISTVSIHIFGD  347 (421)
Q Consensus       286 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~g~  347 (421)
                      +.+.++.+..                 .....++.+.+.-+.......+.-++..|...++++.+ +++....+... |+
T Consensus       114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av-Gn  192 (498)
T KOG0637|consen  114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV-GN  192 (498)
T ss_pred             HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh-cc
Confidence            4443333221                 11223334444555666788899999999988876666 88888555555 87


Q ss_pred             CCchhHHH
Q 014646          348 VPSSPLVG  355 (421)
Q Consensus       348 ~~~~~~~g  355 (421)
                      .+|-.+.+
T Consensus       193 vLGY~~g~  200 (498)
T KOG0637|consen  193 VLGYALGS  200 (498)
T ss_pred             eeeeeccc
Confidence            87764444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.75  E-value=0.093  Score=48.59  Aligned_cols=56  Identities=7%  Similarity=-0.051  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhcccc-chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh
Q 014646          302 ALFTVGELLVFATQA-PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ  358 (421)
Q Consensus       302 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~  358 (421)
                      .+............+ ..+..++|...+++..+-.++.....+. |.++++.+..++.
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganl-g~i~sg~~~~~~~  189 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANV-ALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            344444444444444 5577788888888999999999666666 8888887777766

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.11  Score=46.46  Aligned_cols=61  Identities=18%  Similarity=0.032  Sum_probs=37.6

Q ss_pred             chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          295 SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      .+.+..+....+.++..|-..+....+..+.++++++..+-.+...+ -..|-..|. +.+++
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~f-l~~Gl~~G~-~~s~l  401 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFF-LVGGLALGS-LLSWV  401 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHH-HHHHHHHhh-HHHHH
Confidence            45566666777777776666666677777888887777666666333 333555544 33443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.51  E-value=0.077  Score=46.23  Aligned_cols=133  Identities=17%  Similarity=0.053  Sum_probs=76.9

Q ss_pred             HHHHhhhHHHHhhccch--hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhch--hH
Q 014646          223 YSYWGPKAGYNIYHMSN--ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LY  298 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  298 (421)
                      .....+.+..+......  ..........+...++.+..|.+.||.|||     +.............+......+  .+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-----KVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-----HHHHHHHHHHHHHHHHHHhCccchHH
Confidence            33444545444333221  223344555666677779999999999887     4443333222222222222222  44


Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhcccCc-chhHHHHHHHHHHHHHhccCCchhHHHHhhhh
Q 014646          299 GFLALFTVGELLVFATQAPVNYVCLHSVKP-SLRALSMAISTVSIHIFGDVPSSPLVGVLQDH  360 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~  360 (421)
                      .........+.+.+...+....+..+..|+ +.|+...+.........+..++|.+.+.+.+.
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445666666677778888888876 67888888875533444777777666666654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.44  E-value=0.00073  Score=59.23  Aligned_cols=55  Identities=18%  Similarity=0.061  Sum_probs=2.8

Q ss_pred             hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCch
Q 014646          296 SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSS  351 (421)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~  351 (421)
                      +.+..++...+.++..|-..+....+..+.+++++|..+..+.+.+... |-.+|.
T Consensus       247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~-Gl~~Gs  301 (309)
T PF01733_consen  247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSF-GLFIGS  301 (309)
T ss_dssp             --------------------HHHH--------------------------------
T ss_pred             chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4455566666677776666666677777888887887777776444444 655555

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.23  E-value=0.059  Score=36.31  Aligned_cols=78  Identities=15%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhc
Q 014646          217 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  295 (421)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (421)
                      ..+-+.+...+|...++ .+.+..+. .+.+...++..+|.+...++.++..++     +.+..+.+........+...+
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            34455666677776555 66775444 666888899999999999988876555     666677777777766666666


Q ss_pred             hhHHH
Q 014646          296 SLYGF  300 (421)
Q Consensus       296 ~~~~~  300 (421)
                      +.+.+
T Consensus        79 ~~~~w   83 (85)
T PF06779_consen   79 SFWLW   83 (85)
T ss_pred             chHHH
Confidence            55443

Note that many members are hypothetical proteins.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.024  Score=49.43  Aligned_cols=118  Identities=12%  Similarity=0.026  Sum_probs=64.7

Q ss_pred             cchhhHHHhhhhhcCchHHHHHHHHHHHHHH------hhhcccc------hhHHHHHHHH----Hhhhhhhhhccccccc
Q 014646            5 LVASPIFASLAKSHNPFRLIGVGLSVWTFAT------AGCGSSF------DFWSIAICRM----LVGVGEASFISLAAPF   68 (421)
Q Consensus         5 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~------~~~~~~~------~~~~l~~~r~----l~G~~~~~~~~~~~~~   68 (421)
                      ++..++.|...|+..|+|++...+.+.-++.      +...+..      ++..+..+-+    +..++.=.........
T Consensus        77 lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i  156 (503)
T KOG2601|consen   77 LVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILI  156 (503)
T ss_pred             HhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            4556778899999999999887665433222      2222322      3333333222    2223222222223333


Q ss_pred             ccccC----CCCCchhH---HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHH
Q 014646           69 IDDNA----PVPQKTAW---LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  122 (421)
Q Consensus        69 i~~~~----~~~~r~~~---~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~  122 (421)
                      -.||.    ..+.+...   .+..-..-..-..+.|.+.|.+.+..+-|..-...++-+++
T Consensus       157 ~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  157 ERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             cccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence            34553    23334333   35555555566788999999999888877755555444444

>PRK03612 spermidine synthase; Provisional

Probab=95.83  E-value=0.71  Score=43.79  Aligned_cols=56  Identities=9%  Similarity=-0.043  Sum_probs=30.1

Q ss_pred             HHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh-hhh
Q 014646          305 TVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD-HVN  362 (421)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~-~~~  362 (421)
                      ++.+++.++..|....+..+.. .+..+...|-.+ ..+.+|+++|+++.+++.- ..|
T Consensus       118 ~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly-~~ntlGa~~G~l~~~~vLlp~lG  174 (521)
T PRK03612        118 LLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVL-AADYLGALVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhH-hHHhHHHHHHHHHHHHHHHHhcc
Confidence            3445566666555444443322 222344455553 4455588888888777654 455

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.64  E-value=0.054  Score=52.20  Aligned_cols=156  Identities=13%  Similarity=0.018  Sum_probs=80.6

Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh------
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL------  294 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  294 (421)
                      ++..-.-.-.++.++.+.... .+....-++..+......+...|..|.     +++....++.++..++....      
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrP-----r~Ig~G~~~m~lgsll~alPHf~~~~  188 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRP-----RWIGIGLVLMGLGSLLFALPHFFSGP  188 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcc-----ceeeechhHHHHHHHHHhChHHhcCc
Confidence            333333334566777765444 334555677777777777777777665     44444444433333322210      


Q ss_pred             ------------------------------------------chhHHHHHHHH----HHHHHHhccccchhhhhhcccCc
Q 014646          295 ------------------------------------------SSLYGFLALFT----VGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       295 ------------------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                                                                .+....+++++    +.|.+....++...+++-|.+.+
T Consensus       189 y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~  268 (735)
T KOG3626|consen  189 YEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK  268 (735)
T ss_pred             chhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc
Confidence                                                      00011222333    33444444555556667777777


Q ss_pred             chhHHHHHHHHHHHHHhccCCchhHHHHhhhhh------------------hchhhhhhHHHHHHHHHHHHhh
Q 014646          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHV------------------NNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++-+...|+.+ .+..+|=++|-.+++......                  |.|...|++.+.+.+...+.++
T Consensus       269 ~~SplYlgi~~-~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f  340 (735)
T KOG3626|consen  269 KNSPLYLGILY-SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF  340 (735)
T ss_pred             cCCcHHHHHHH-HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888874 445545555444444443221                  3444555556555555555444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.45  E-value=0.58  Score=42.02  Aligned_cols=36  Identities=11%  Similarity=-0.043  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHH
Q 014646          299 GFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSM  335 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (421)
                      ..++...+.+.+.+...+..+..... +|+++....+
T Consensus       119 vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm  154 (406)
T KOG1479|consen  119 VTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM  154 (406)
T ss_pred             HHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH
Confidence            33445555666666666666665444 6777544333

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.36  E-value=0.83  Score=42.73  Aligned_cols=41  Identities=10%  Similarity=-0.044  Sum_probs=30.0

Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhh
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQD  359 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~  359 (421)
                      .+..+.+....++..+-.++.....+. |.+++..+..++.+
T Consensus       165 FW~fAN~itt~~eAKRfYpl~g~gani-gli~sG~~~~~~~~  205 (491)
T PF03219_consen  165 FWGFANEITTVEEAKRFYPLFGLGANI-GLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            466677777778999999999766666 77766666666655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.27  E-value=0.017  Score=38.87  Aligned_cols=47  Identities=28%  Similarity=0.508  Sum_probs=43.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA   48 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~   48 (421)
                      +||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus        38 ~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   38 LGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            68999999999999998999999999999999999999999887653

Note that many members are hypothetical proteins.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.26  E-value=0.1  Score=47.80  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             cccchhhHHHhhhh---hcCchHHHHHHHHHHHHHHhhhccc------------------chhHHHHHHHHHhhhhhhhh
Q 014646            3 GLLVASPIFASLAK---SHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAICRMLVGVGEASF   61 (421)
Q Consensus         3 g~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~   61 (421)
                      |..+++.+.+.+.+   ++||++.+.++..+..++.++.-.+                  +++...++.-+++|++.+..
T Consensus       291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~  370 (461)
T KOG3098|consen  291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF  370 (461)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence            34455666666665   5899999999998888888775543                  34667788889999999999


Q ss_pred             cccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHH
Q 014646           62 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  102 (421)
Q Consensus        62 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~  102 (421)
                      ....+.++.+.+ +++|..+.++...-..++..++-.....
T Consensus       371 ~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  371 NTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999 5568888888887777777665554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.12  E-value=0.11  Score=47.01  Aligned_cols=87  Identities=15%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhccccchhhhhhcccCcc---hhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHH
Q 014646          298 YGFLALFTVGELLVFATQAPVNYVCLHSVKPS---LRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSI  374 (421)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  374 (421)
                      ..+.+.+.+...+.++.=+.......|.++++   .|.+.........+. |..+++...+++.++.+ |...|.+..+.
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~-G~~~~~~~~~~i~~~~~-~~~~f~i~~~~  111 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI-GSLFSPTLVPYIQQNYG-WFLGFGIPAIG  111 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHCS--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh-hhHhhcccchhhccccc-hhhhhhHHHHH
Confidence            45677777788888888888899999988775   566666677677777 88888888899998876 87888888888


Q ss_pred             HHHHHHHhhhhe
Q 014646          375 FFLAAGIWFVGI  386 (421)
Q Consensus       375 ~~~~~~~~~~~~  386 (421)
                      .+++.+.++..+
T Consensus       112 ~~~~~~~f~~~~  123 (372)
T PF00854_consen  112 MLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCC
Confidence            877777666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.91  E-value=0.84  Score=41.27  Aligned_cols=73  Identities=11%  Similarity=-0.003  Sum_probs=42.3

Q ss_pred             HHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCc
Q 014646          250 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKP  328 (421)
Q Consensus       250 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (421)
                      +..++..+++.++.+|+.-+     .-......+....+++....++.+.-++..++.++..+..-.....+ ...+++
T Consensus        70 ~P~l~~Kl~aP~fi~~v~y~-----~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~  142 (402)
T PF02487_consen   70 LPSLLVKLIAPFFIHRVPYW-----IRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK  142 (402)
T ss_pred             HHHHHHHHHhHhhhhhccch-----HHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence            45566677788888887654     22333344444455555555677766777777766666555444444 334443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=94.89  E-value=0.12  Score=48.89  Aligned_cols=77  Identities=13%  Similarity=-0.032  Sum_probs=50.8

Q ss_pred             HHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhh-cccchhHHHHHhHHHHHHHHH
Q 014646           48 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAILMLPFAV  125 (421)
Q Consensus        48 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~gwr~~f~~~~~~~~~~~~  125 (421)
                      +..-++.++..|+..|....+..+... ++-++..|..+....+|.++|.++.+++. ..+|-....++.+.+.+..++
T Consensus       114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        114 YVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            334556677888888777666654322 23567788889999999999999887765 466655445455554444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.02  E-value=0.054  Score=36.02  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=23.2

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHH
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVW   31 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~   31 (421)
                      ..++++++|.++||+++++.++....+.
T Consensus        48 ~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   48 RFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            3578999999999999999887776554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.14  E-value=0.81  Score=42.19  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=21.8

Q ss_pred             chhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHH
Q 014646          317 PVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      ..-.+......+++++-|+.......+. |.+++-.++
T Consensus       138 AVDGWALT~Ls~~n~~~ASTcqtvG~~~-Gyfls~tvF  174 (544)
T PF13000_consen  138 AVDGWALTMLSPENVGYASTCQTVGQTA-GYFLSFTVF  174 (544)
T ss_pred             eeehhhhhhcChhhcchHHHHHHhHhhh-hHHHHHHHH
Confidence            3445556667778777777766444343 666654443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=91.10  E-value=10  Score=33.29  Aligned_cols=70  Identities=6%  Similarity=0.101  Sum_probs=56.3

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCC
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP   74 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~   74 (421)
                      .+..+++.+.+..++|-|+++.++...+... +..=+=+.+..++-.-...|++.+..+..--+|+++.-.
T Consensus        71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3456777888999999999999988887653 333345788899999999999999999988888887654

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=90.83  E-value=2.9  Score=37.29  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccch-hhHHHHhhHhHHHHHHHhHHHHHHH-----hhcccccchhhHH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILD-----QMGATISNAFKLL  277 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~~~~  277 (421)
                      +.+..+.+.+..++....... -+|.+++. .+.+- ....+....+--  .--++...++|     |+|||+.    .+
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrks----Wv  102 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKS----WV  102 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccc----ee
Confidence            445555555566655554444 78888873 34442 222222221111  11345555666     8998843    23


Q ss_pred             HHHHH-HHHHHHHHHHhhc----------hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhc
Q 014646          278 SAATF-LGAISCLTAFCLS----------SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFG  346 (421)
Q Consensus       278 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  346 (421)
                      +-+.. ++..+.++....+          +.......+++..+..+.--...-.+......+++.|-++.......+. |
T Consensus       103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~-G  181 (510)
T KOG3574|consen  103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA-G  181 (510)
T ss_pred             eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh-h
Confidence            32332 3333333322211          1112222333344444433334455666667777767666665333333 5


Q ss_pred             cCCch
Q 014646          347 DVPSS  351 (421)
Q Consensus       347 ~~~~~  351 (421)
                      .+++.
T Consensus       182 yfL~~  186 (510)
T KOG3574|consen  182 YFLGN  186 (510)
T ss_pred             HHhhc
Confidence            55543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=89.15  E-value=14  Score=35.76  Aligned_cols=167  Identities=11%  Similarity=-0.004  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Q 014646          214 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  292 (421)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (421)
                      .+-...+++....+-.|+.+..+.+...+ -.............+.+++++|-+--|.    +.+.++.++...+..++.
T Consensus        47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry----~tI~~~s~i~~~G~~~lt  122 (571)
T KOG1237|consen   47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY----FTINIGSLISLLGLFGLT  122 (571)
T ss_pred             HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Confidence            34444555555666667777766664222 2222333344556678899999864442    444444444333322221


Q ss_pred             hhc----------------------h---hHHHHHHHHHHHHHHhccccchhhhhhcccCc----chhH--HHHHHHHHH
Q 014646          293 CLS----------------------S---LYGFLALFTVGELLVFATQAPVNYVCLHSVKP----SLRA--LSMAISTVS  341 (421)
Q Consensus       293 ~~~----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~g~~~~~  341 (421)
                      ...                      +   ...+...+.+...+.++.-+...+.-.|-+++    +.+.  .-+......
T Consensus       123 ~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~  202 (571)
T KOG1237|consen  123 LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFS  202 (571)
T ss_pred             HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHH
Confidence            100                      0   01222233333345556667777777777772    2222  444444344


Q ss_pred             HHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhhhhe
Q 014646          342 IHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWFVGI  386 (421)
Q Consensus       342 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (421)
                      .+. |..++..+.-++.|..+ |...+........++.++++...
T Consensus       203 ~~~-g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g~  245 (571)
T KOG1237|consen  203 QNG-GALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPGF  245 (571)
T ss_pred             HHH-HHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcCc
Confidence            444 66666666666666654 87888888777777776665543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.51  E-value=10  Score=35.26  Aligned_cols=31  Identities=6%  Similarity=-0.144  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHhccccchhhhhhcccCcch
Q 014646          299 GFLALFTVGELLVFATQAPVNYVCLHSVKPSL  330 (421)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (421)
                      ..++..++.+++.+...+....+.. .+|++.
T Consensus       108 ~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~  138 (437)
T TIGR00939       108 TTMASVVIINSGMALLQGSLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHHHhhhhhhcccchhhcc-cCCHHH
Confidence            3444555566666666666666554 466654

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=82.72  E-value=10  Score=34.52  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=10.9

Q ss_pred             HHHHHHHhHHHHHHHhhcc
Q 014646          250 VCGIVGTISGGFILDQMGA  268 (421)
Q Consensus       250 ~~~~~~~~~~g~l~d~~~~  268 (421)
                      +..++..+..|++..|.+-
T Consensus         6 i~~i~~ii~~G~~~~~~~~   24 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRFGI   24 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            3344455566777776643

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.31  E-value=0.95  Score=38.08  Aligned_cols=69  Identities=10%  Similarity=0.084  Sum_probs=35.1

Q ss_pred             HHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccch-hhhhhccc
Q 014646          252 GIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPV-NYVCLHSV  326 (421)
Q Consensus       252 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  326 (421)
                      .++...+.|-++||.|||     +..+...+...++++-= ..+..-..++.=.+.|......++.. .+++.|..
T Consensus        85 smLFGtivgSLaDkqGRK-----racvtycitYiLsCiTK-hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen   85 SMLFGTIVGSLADKQGRK-----RACVTYCITYILSCITK-HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHhhhccc-----cceeeehHHHHHHHHhh-cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            355566678899999998     44433333333333321 12222333444455555555444444 44555544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.80  E-value=3.8  Score=35.42  Aligned_cols=75  Identities=9%  Similarity=0.005  Sum_probs=61.4

Q ss_pred             HHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHh
Q 014646           29 SVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  103 (421)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l  103 (421)
                      +++.+...+..+.++++..++.-+.-|+-.|..+....--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            444555566678899999999999999988888877777788878888999999999999999998888776554

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.36  E-value=4.9  Score=28.15  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=23.4

Q ss_pred             chhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhch
Q 014646          329 SLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNW  364 (421)
Q Consensus       329 ~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~  364 (421)
                      +.++.+.++- .....+++++-....||+.|++-+.
T Consensus        38 s~k~~~~a~k-lssefIsGilVGa~iG~llD~~agT   72 (116)
T COG5336          38 SIKGYAQAFK-LSSEFISGILVGAGIGWLLDKFAGT   72 (116)
T ss_pred             hhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4667777776 4555556565566889999987544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-12

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 49/374 (13%), Positives = 105/374 (28%), Gaps = 39/374 (10%)

Query: 19  NPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP 74
           NP   +  GL +        G    ++     + +   L G  +          +     
Sbjct: 90  NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS 149

Query: 75  VPQKTAWLSMFYMCIPTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--K 131
             ++   +S++      G  +   ++   +    +W  A +  A   +  A+ AF +   
Sbjct: 150 QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 209

Query: 132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLS 191
             Q  G  P E  K       +E +E                               +L+
Sbjct: 210 TPQSCGLPPIEEYKNDYPDDYNEKAEQ------------------------------ELT 239

Query: 192 QFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-V 250
                 + +L  K+     +  +    +      W P     + H +     +       
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299

Query: 251 CGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL 310
            GI GT+  G++ D++      A  +        A          +    +    V   L
Sbjct: 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359

Query: 311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLA 370
           ++     +    L          +   + +  ++ G V +S +VG   D    W    + 
Sbjct: 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMV 418

Query: 371 LTSIFFLAAGIWFV 384
           +     LA  +  V
Sbjct: 419 MIGGSILAVILLIV 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.96
2xut_A	524	Proton/peptide symporter family protein; transport	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.55
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.5
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.39
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.0

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.6e-37  Score=286.08  Aligned_cols=348  Identities=13%  Similarity=0.105  Sum_probs=265.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcc----cchhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      +++.++++++|+++||+|||++++++.++.+++.+++++    +++++.++++|+++|++.+...+...+++.|++|+++
T Consensus        73 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  152 (451)
T 1pw4_A           73 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  152 (451)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh
Confidence            467889999999999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhcccc-hhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++.+.+..+|.+++|.+++.+.+..| ||+.|++.+++.++..++.++..||++++...+++++..         
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  223 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------  223 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc---------
Confidence            9999999999999999999999999888888 999999999988887777777777754432111110000         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                       +. .    .++    .+.+.+++.       ..++  ...++++++|.++...+..++..........+.|.|+++..+
T Consensus       224 -~~-~----~~~----~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  284 (451)
T 1pw4_A          224 -ND-Y----PDD----YNEKAEQEL-------TAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  284 (451)
T ss_dssp             -CC-----------------------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             -cc-c----ccc----chhhhhccc-------cccc--chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             00 0    000    000000000       0000  114567789999998888888888888999999999998888


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhh--cccccchhhHHHHHHHHHH-HHHHHHHhh--chhHHHHHHHHHHHHH
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQM--GATISNAFKLLSAATFLGA-ISCLTAFCL--SSLYGFLALFTVGELL  310 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~  310 (421)
                      .++... .......++.+++.++.+++.||+  ++|     +.+.....+.. +..+.....  .+.+.......+.+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            876544 445667788999999999999999  877     55554444444 333333333  2455555566666676


Q ss_pred             HhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          311 VFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      .+...+....+..+.+|+++|+++.|+.+...+.+|..++|.+.|.+.|..| +...+++.+++.+++.++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHH
Confidence            6677777788999999999999999999766555488889999999999876 77777777776666655544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.6e-35  Score=271.54  Aligned_cols=321  Identities=16%  Similarity=0.185  Sum_probs=254.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r   78 (421)
                      +++.++++++|+++||+|||++++++.++.+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|
T Consensus        72 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  151 (438)
T 3o7q_A           72 FGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSG  151 (438)
T ss_dssp             HHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH
T ss_pred             HHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhH
Confidence            4678899999999999999999999999999999999   8999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhh-cccc-------------------------hhHHHHHhHHHHHHHHHHHHhcc-
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVIK-  131 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~g-------------------------wr~~f~~~~~~~~~~~~~~~~~~-  131 (421)
                      ++++++.+.+.++|.+++|.+++.+. +..+                         ||+.|++.+++.++..++.++.. 
T Consensus       152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  231 (438)
T 3o7q_A          152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF  231 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988 5554                         99999988877766665554432 


Q ss_pred             cccccccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHH
Q 014646          132 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  211 (421)
Q Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  211 (421)
                      ||.+++.+++++                                              .++..+++++++++|.++...+
T Consensus       232 p~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  265 (438)
T 3o7q_A          232 PALQSDNHSDAK----------------------------------------------QGSFSASLSRLARIRHWRWAVL  265 (438)
T ss_dssp             CCCTTTCCCCSS----------------------------------------------TTSHHHHHHHHTTCSHHHHHHH
T ss_pred             Cccccccccccc----------------------------------------------ccchhhhHHHHHhChHHHHHHH
Confidence            332211000000                                              0001235677889999999888


Q ss_pred             HHHHHHHHHHHHHHHhhhH-HHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 014646          212 GYIAYNFVIGAYSYWGPKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  289 (421)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (421)
                      ..++..........+.|.| +++.++.++... .......++.+++.++.+++.||+++|     +.+....++..+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence            8888888888889999999 888878776544 445667788899999999999999998     777666666666666


Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhh
Q 014646          290 TAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTL  369 (421)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  369 (421)
                      +....++.+.. ....+.+++.+...+....+..+.+|++ ++.+.++.+ ... +|..++|.+.|++.|..|++...+.
T Consensus       341 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~g~~~~~~~~g~l~~~~g~~~~~~~  416 (438)
T 3o7q_A          341 ISAFAGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI-IGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_dssp             HHHHCCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred             HHHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH-HHHHHHHHHHHHHHHHhcchHHHHH
Confidence            65555555443 3446666777777788888888888866 888888874 444 5889999999999999876777777


Q ss_pred             HHHHHHHH
Q 014646          370 ALTSIFFL  377 (421)
Q Consensus       370 ~~~~~~~~  377 (421)
                      +.+.+.++
T Consensus       417 ~~~~~~~~  424 (438)
T 3o7q_A          417 IPALCFAV  424 (438)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2.6e-36  Score=282.39  Aligned_cols=378  Identities=14%  Similarity=0.108  Sum_probs=239.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhc------------------ccchhHHHHHHHHHhhhhhhhhcc
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFIS   63 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~   63 (421)
                      +|+++|++++|+++||+|||++++++.+++.+++++++                  +++|+++++++|+++|++.|...+
T Consensus        66 ~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~  145 (491)
T 4gc0_A           66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASM  145 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999988                  478999999999999999999999


Q ss_pred             cccccccccCCCCCchhHHHHHHhHHHHHhHHHHHHHHHhhc--------ccchhHHHHHhHHHHHHHHHHHHhcccccc
Q 014646           64 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        64 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      ....+++|+.|+++|++..++.+.+..+|.++++.++..+..        ..+||+.+.+..++.++..+. .+..||++
T Consensus       146 ~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp  224 (491)
T 4gc0_A          146 LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESP  224 (491)
T ss_dssp             HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCH
T ss_pred             HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCCh
Confidence            999999999999999999999999999999999998877653        245888888887776555444 44558888


Q ss_pred             cccCCcccccchhhhcccccccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHH-HHHH
Q 014646          136 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV-LGYI  214 (421)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~  214 (421)
                      ++...+++.++.  .+..++....+.   .++...+..+...+           .++ .......++.+...... ...+
T Consensus       225 ~~L~~~~~~~~a--~~~l~~~~~~~~---~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4gc0_A          225 RWLMSRGKQEQA--EGILRKIMGNTL---ATQAVQEIKHSLDH-----------GRK-TGGRLLMFGVGVIVIGVMLSIF  287 (491)
T ss_dssp             HHHHHTTCHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHH-----------HHH-HTTHHHHSCCTHHHHHHHHHHH
T ss_pred             HHHHHcCchhHH--HHhHHHhcCCch---hHHHHHHHHHHHHh-----------hhh-hhhHHHHhcccHHHHHHHHHHH
Confidence            764322221111  000000000000   00000000000000           000 01111223333333333 3333


Q ss_pred             HHHHHHHHHHHHhhhHHHHhhccchhhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH--
Q 014646          215 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--  292 (421)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (421)
                      ......+.+..|.|.+.++....+...........+..+++.++++++.||+|||     +.+........+..+...  
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----~~~~~~~~~~~~~~~~l~~~  362 (491)
T 4gc0_A          288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----PLQIIGALGMAIGMFSLGTA  362 (491)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----chhccchHHHHHHHHHHHHH
Confidence            3344456666777776666544443333445667788899999999999999998     555544444433332221  


Q ss_pred             --hhchhHHHHHHHHHHHHHHhccc-cchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhh-----ch
Q 014646          293 --CLSSLYGFLALFTVGELLVFATQ-APVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVN-----NW  364 (421)
Q Consensus       293 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~-----~~  364 (421)
                        ...+....+....+...+.+... +..+.+..|.+|++.|++++|+.+...+. ++++++.+.+.+.+...     +.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~-~~~i~~~~~p~l~~~~~~~~~~~~  441 (491)
T 4gc0_A          363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWL-ANYFVSWTFPMMDKNSWLVAHFHN  441 (491)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHH-HHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred             HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence              11222233333333333333333 34567888999999999999999766666 77778878777655321     12


Q ss_pred             hhhhhHHHHHHHHHHHHhhhheeeec-ccccccccccccccC
Q 014646          365 RKTTLALTSIFFLAAGIWFVGIFLKS-IDKFNEDGENQISLD  405 (421)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  405 (421)
                      ...+++.+++.+++.++.+  .+.|| |+|+.||.|+..+++
T Consensus       442 ~~~~~i~~~~~~~~~i~~~--~~~PETkg~tLeei~~~f~~~  481 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMW--KFVPETKGKTLEELEALWEPE  481 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HHCCCCTTCCHHHHGGGTC--
T ss_pred             hHHHHHHHHHHHHHHHHHH--heecCCCCCCHHHHHHHhCCC
Confidence            2345555555444443332  24566 899999888776543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=4.3e-34  Score=257.89  Aligned_cols=313  Identities=14%  Similarity=0.065  Sum_probs=241.9

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhH
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW   81 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~   81 (421)
                      +++.++++++|+++||+|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|+++
T Consensus        46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (375)
T 2gfp_A           46 LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHA  125 (375)
T ss_dssp             HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSH
T ss_pred             HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccccCC
Q 014646           82 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL  161 (421)
Q Consensus        82 ~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (421)
                      +++.+.+..+|..++|.+++.+.+..+||+.|++.+++.++..+..++..||++++.++  +++                
T Consensus       126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------  187 (375)
T 2gfp_A          126 NSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTR----------------  187 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCC----------------
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--ccc----------------
Confidence            99999999999999999999999988999999999887766655455555654322100  000                


Q ss_pred             CccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhh
Q 014646          162 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNAD  241 (421)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (421)
                                                     ..+++++++++|.++...+..++.......+..+.|.|+++..+.++..
T Consensus       188 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  236 (375)
T 2gfp_A          188 -------------------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT  236 (375)
T ss_dssp             -------------------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence                                           0123456778888988888888888888889999999999877777544


Q ss_pred             H-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH-HHHHHHHHHHHh--hchhHHHHHHHHHHHHHHhccccc
Q 014646          242 M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT-FLGAISCLTAFC--LSSLYGFLALFTVGELLVFATQAP  317 (421)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  317 (421)
                      . .......++.+++.++.+++.||.+++     ....... ............  .++.+...+...+.+++.+...+.
T Consensus       237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          237 VSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTTTTHHHHH-----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            4 444666677788888888888887763     2222211 111111111111  234555556666777888888888


Q ss_pred             hhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHH
Q 014646          318 VNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLAL  371 (421)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  371 (421)
                      ...+..+..| ++|+++.|+.+...+. |..++|.+.|.+.+..+ +...+...
T Consensus       312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~-~~~~~~~~  362 (375)
T 2gfp_A          312 ATSGAMEPFP-FLAGTAGALVGGLQNI-GSGVLASLSAMLPQTGQ-GSLGLLMT  362 (375)
T ss_dssp             THHHHHTHHH-HHHHHHHHHHHHHHHH-HHHCCSTTCTHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhCC-cccchHHHHHHHHHHH-HHHHHHHHHHHHhcCCc-ccHHHHHH
Confidence            8999999887 8999999999766665 88999999999987644 65555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.4e-32  Score=257.09  Aligned_cols=376  Identities=10%  Similarity=-0.039  Sum_probs=239.3

Q ss_pred             ccccchhhHHHhhhhh-cCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCC--c
Q 014646            2 VGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ--K   78 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r   78 (421)
                      +++.++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++  |
T Consensus        65 ~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r  144 (491)
T 4aps_A           65 SMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRR  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccc
Confidence            4678899999999999 899999999999999999999999999999999999999999999999999999999988  7


Q ss_pred             hhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccccc
Q 014646           79 TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA  158 (421)
Q Consensus        79 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (421)
                      +.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..++.++..|+..++..++++.+... ++..+..+.
T Consensus       145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  223 (491)
T 4aps_A          145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP-EEVKPLLVK  223 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH-HHHHHHHHH
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc-chhHHHHHH
Confidence            7788889999999999999999999998999999999887776666555544444322211111100000 000000000


Q ss_pred             ----------------cCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHH
Q 014646          159 ----------------SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  222 (421)
Q Consensus       159 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (421)
                                      ..+..+.++.............  ........++.....++..+....+...+........+..
T Consensus       224 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (491)
T 4aps_A          224 VSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIP--VFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQ  301 (491)
T ss_dssp             CCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH--HHHHHHHC------------CTTHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHH--HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                            0000000000000000000000  0000000000000011111222334444444555555566


Q ss_pred             HHHHhhhHHHHhhccch-hhHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh-------
Q 014646          223 YSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL-------  294 (421)
Q Consensus       223 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  294 (421)
                      ...+.|.|.++..+.+. ..........+..+++.++.+++.||++||+......+..+..+..+..+.....       
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (491)
T 4aps_A          302 GSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS  381 (491)
T ss_dssp             GGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred             ccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            66778888888776663 2334446667788888999999999999885433233334444444443332221       


Q ss_pred             --chhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHH
Q 014646          295 --SSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALT  372 (421)
Q Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  372 (421)
                        .+.+.......+.+++.+...+....+..+.+|++.|+++.|+.+...+. |..++|.+.+.+.+.  ++...+...+
T Consensus       382 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~i~~~~~~~~~~~--~~~~~~~~~~  458 (491)
T 4aps_A          382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV-GSALNAQLVTLYNAK--SEVAYFSYFG  458 (491)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH-HHHHHHHHGGGGGGS--STTHHHHHTH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence              24455556666777777777888899999999999999999999766665 888999998888774  3445666665


Q ss_pred             HHHHHHHHHhh
Q 014646          373 SIFFLAAGIWF  383 (421)
Q Consensus       373 ~~~~~~~~~~~  383 (421)
                      .+.+++.++.+
T Consensus       459 ~~~~~~~~~~~  469 (491)
T 4aps_A          459 LGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.96  E-value=2.1e-29  Score=230.00  Aligned_cols=332  Identities=13%  Similarity=0.028  Sum_probs=209.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHH---hhhcccchhH-HHHHHHHHhhhhhhhhcccccccccccCCC--
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGVGEASFISLAAPFIDDNAPV--   75 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--   75 (421)
                      +++.++++++|+++||+|||++++++..+++++.   ....+++... .+...+++.|++.+...+.....+.++.++  
T Consensus        54 ~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  133 (417)
T 2cfq_A           54 LFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            4677899999999999999999999888775532   2122332221 234567777776665555555555555543  


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      ++++..++.......+|..++|.+++++.+ .+||+.|++.++..++..+..++..||+++.   .++++..        
T Consensus       134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------  201 (417)
T 2cfq_A          134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANAV--------  201 (417)
T ss_dssp             HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSSSSS--------
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccc---ccccccc--------
Confidence            345777788888889999999999999887 5899999988776544433333222332110   0000000        


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY  235 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (421)
                          +.              + .++           ...++.++++++|.++...+..+.....+..+..+.|.|+.+.+
T Consensus       202 ----~~--------------~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T 2cfq_A          202 ----GA--------------N-HSA-----------FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             ----SS--------------C-CCC-----------CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ----cc--------------c-ccc-----------ccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00              0 000           00123456778888877666555555555556667888876655


Q ss_pred             ccc---hhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          236 HMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       236 ~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                      +..   .... ....+..++.+++.++.+++.||++||     +.+.....+..+..+.....++.+...+...+.+++.
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (417)
T 2cfq_A          252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHH
T ss_pred             hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            422   1111 233455567788899999999999998     6666555555544444433444444444444444444


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHH-HHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAIS-TVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      ....+....+..|..|++.|+++.++. +...+. |++++|.+.|++.|..| +...|.+.+++.+++.++.
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l-g~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~  396 (417)
T 2cfq_A          327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL-AMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH-HHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH-HHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHH
Confidence            444455677889999999999999984 545444 88899999999999766 6677777666655555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.94  E-value=3.8e-27  Score=222.05  Aligned_cols=129  Identities=15%  Similarity=0.125  Sum_probs=116.7

Q ss_pred             ccccchhhHHHhhhhhc-CchHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHhhhhhhhhcccccccccccCCCCCch
Q 014646            2 VGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT   79 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~   79 (421)
                      +++.++++++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+++|++.+...+...+++.|++|+++|+
T Consensus        65 ~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~  144 (524)
T 2xut_A           65 IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS  144 (524)
T ss_dssp             HHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence            45678999999999999 999999999999999999999999 9999999999999999999999999999999999998


Q ss_pred             hHHHH---HHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhc
Q 014646           80 AWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  130 (421)
Q Consensus        80 ~~~~~---~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  130 (421)
                      ++.+.   .+.+.++|.+++|.+++.+.+..|||+.|++.+++.++..++.++.
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            76666   9999999999999999999988899999999988776655554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.55  E-value=2.7e-13  Score=124.88  Aligned_cols=172  Identities=16%  Similarity=0.087  Sum_probs=133.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHH
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  281 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  281 (421)
                      ++.+....+..+........+...+|.+.++.  .+..+. ...+...++..++.++.|+++||+|||     +.+..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch-----HHHHHHH
Confidence            44555555556666666666777788777765  454333 555778889999999999999999998     7777777


Q ss_pred             HHHHHHHHHHHh----hchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHh
Q 014646          282 FLGAISCLTAFC----LSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVL  357 (421)
Q Consensus       282 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l  357 (421)
                      ++..+..++...    .++.+.+++..++.+++.+...+....++.|.+|+++|++++++.+..... |.+++|.+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l  178 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            777777776666    677788888888888888888888999999999999999999999766665 999999999998


Q ss_pred             hhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          358 QDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      .+..++|+..+++.+...++..++.
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~  203 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFA  203 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHH
Confidence            8776558888888776655544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.50  E-value=5.4e-13  Score=124.35  Aligned_cols=173  Identities=11%  Similarity=0.049  Sum_probs=138.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHh-----hccchhhH-HHHhhHhHHHHHHHhHHHHHHHh-hcccccchhhH
Q 014646          204 KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-----YHMSNADM-MFGGVTIVCGIVGTISGGFILDQ-MGATISNAFKL  276 (421)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~  276 (421)
                      +.++......++....++....+++.|+++.     ++.+.... ...+...++..++.++.|+++|| +|||     +.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----~~   87 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-----PA   87 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----HH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HH
Confidence            4566666667777788888888999999887     88876555 44577888999999999999999 8998     88


Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcch--hHHHHHHHHHHHHHhccCCchhHH
Q 014646          277 LSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSL--RALSMAISTVSIHIFGDVPSSPLV  354 (421)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~g~~~~~~~~  354 (421)
                      +..+.++..+..++....++.+..++..++.+++.+...+....++.|.+|+++  |+.+.++.+...+. |..++|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~  166 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINL-GAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHH-HHHHHHHHH
Confidence            888877777777777777788888888888888888888889999999999987  77888888666665 889999999


Q ss_pred             HHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          355 GVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       355 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +.+.+..+ |+..+++.+...+++.+..+
T Consensus       167 ~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          167 GAAQEAAG-YHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            99998766 88888877665555544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=1.3e-12  Score=119.81  Aligned_cols=151  Identities=9%  Similarity=0.053  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHH
Q 014646          206 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG  284 (421)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  284 (421)
                      +....+..+.............|.+. +.++.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----~~l~~~~~~~  101 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK-----AGIITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch-----HHHHHHHHHH
Confidence            33444444555555566666677754 4567776554 455777888899999999999999999     7777777777


Q ss_pred             HHHHHHH---HhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhh-hh
Q 014646          285 AISCLTA---FCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQ-DH  360 (421)
Q Consensus       285 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~-~~  360 (421)
                      .+..++.   ...++.+.+++..++.+++.+...+....++.+.+|+++|++++++.+..... |..++|.+.+.+. +.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF-GAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH-HHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence            7666665   56678888888888899999888889999999999999999999999766665 9999999999988 54


Q ss_pred             hhc
Q 014646          361 VNN  363 (421)
Q Consensus       361 ~~~  363 (421)
                      .+.
T Consensus       181 ~~~  183 (438)
T 3o7q_A          181 VPH  183 (438)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.39  E-value=5.1e-12  Score=118.75  Aligned_cols=173  Identities=12%  Similarity=0.015  Sum_probs=132.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc------cchhhH-HHHhhHhHHHHHHHhHHHHHHHhh-cccccchh
Q 014646          203 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH------MSNADM-MFGGVTIVCGIVGTISGGFILDQM-GATISNAF  274 (421)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~  274 (421)
                      ++.++...+..++....++....+++.|+.+..+      .+.... .......++..++.++.|+++||+ |||     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3455666666777778888888899999988777      675544 445777888899999999999999 998     


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHH---HHHHHHHhccCCc
Q 014646          275 KLLSAATFLGAISCLTAFCLS-SLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAI---STVSIHIFGDVPS  350 (421)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~g~~~~  350 (421)
                      +.+..+.++..+..++....+ +.+.+++..++.+++.+...+....++.+.+|+++|+++.+.   .+...+. |..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-g~~~g  164 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF-GSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            777777777666666666666 777777777888888888888899999999999999776666   6555555 88889


Q ss_pred             hhHHHHhhhhhhchhhhhhHHHHHHHHHHHHh
Q 014646          351 SPLVGVLQDHVNNWRKTTLALTSIFFLAAGIW  382 (421)
Q Consensus       351 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  382 (421)
                      |.+.+.+.+..+ |+..+.+.+...++..+..
T Consensus       165 ~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          165 SLSMPLLLKNFG-AAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-HHHHHHHHHHHHHHHHHHH
Confidence            999999888765 7777777766655544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.35  E-value=7.4e-13  Score=120.54  Aligned_cols=131  Identities=8%  Similarity=0.021  Sum_probs=112.7

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+++.
T Consensus       271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  350 (417)
T 2cfq_A          271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            34567899999999999999999999998888888888888888888888888887777777788999999999999999


Q ss_pred             HH-HHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccc
Q 014646           83 SM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        83 ~~-~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      +. ++....+|..++|.+++.+.+..|++..|.+.+++.++..++.++..||
T Consensus       351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            98 5888899999999999999988899999999988877777666655554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.33  E-value=7.4e-12  Score=112.30  Aligned_cols=162  Identities=14%  Similarity=0.070  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 014646          210 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  288 (421)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (421)
                      .+..++.......+....|.+.++ .+.++.+. ...+...++..++.++.|+++||+|||     +.+..+..+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            6 VLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR-----PVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC-----CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH
Confidence            344455555556666667766544 66665444 455777888999999999999999998     66666666666666


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhh
Q 014646          289 LTAFCLSSLYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTT  368 (421)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  368 (421)
                      +.....++.+...+...+.+++.+...+....++.|..|+++|++++++.+..... |..++|.+.+++.+..+ |+..+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~-~~~~~  157 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILV-SPLLAPLIGGLLDTMWN-WRACY  157 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHH-HHHHHHHHHHHSSCHHH-HHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc-HHHHH
Confidence            66666677777777778888888888888899999999999999999999766665 88999999999988765 77777


Q ss_pred             hHHHHHHHHHH
Q 014646          369 LALTSIFFLAA  379 (421)
Q Consensus       369 ~~~~~~~~~~~  379 (421)
                      .+.+...++..
T Consensus       158 ~~~~~~~~~~~  168 (375)
T 2gfp_A          158 LFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            76665544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.00  E-value=1.1e-09  Score=101.94  Aligned_cols=131  Identities=8%  Similarity=0.011  Sum_probs=97.0

Q ss_pred             ccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhccc-----chhHHHHHHH-HHhhhhhhhhcccccccccccCCCCC
Q 014646            4 LLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICR-MLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         4 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r-~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ..++.++.+++.||+|||+.++.+.....++.+..+..     ++...+...- +..+.+. ...+....+.+|.+|.+.
T Consensus       325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~  403 (491)
T 4gc0_A          325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI  403 (491)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT
T ss_pred             HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH
Confidence            45678899999999999999999888887776665432     2222222222 2222222 344566789999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhc------ccchhHHHHHhHHHHHHHHHHHHhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  135 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~  135 (421)
                      |++++++......+|..+++.+...+.+      ..++.+.|++.++++++..+..+++.||+.
T Consensus       404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            9999999999999999988887665543      345677888999988888888888889864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.53
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=278.63  Aligned_cols=351  Identities=13%  Similarity=0.078  Sum_probs=255.6

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccc----hhHHHHHHHHHhhhhhhhhcccccccccccCCCCC
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQ   77 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~   77 (421)
                      ++++++++++|+++||+|||+++.++.++.+++.+++++++    +++.+++.|++.|++.+...+....++.|++|+++
T Consensus        70 ~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  149 (447)
T d1pw4a_          70 IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE  149 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc
Confidence            57789999999999999999999999999999999988774    77899999999999999999999999999999999


Q ss_pred             chhHHHHHHhHHHHHhHHHHHHHHHhhcc-cchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhcccccc
Q 014646           78 KTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  156 (421)
Q Consensus        78 r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  156 (421)
                      |++++++.+.+..+|..+++.+++.+... .+||+.|++.+++.++..++.++..++.++....++.++..         
T Consensus       150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  220 (447)
T d1pw4a_         150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK---------  220 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC---------
T ss_pred             ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh---------
Confidence            99999999999999999999998877654 47999999999988888888777766544332111111000         


Q ss_pred             cccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc
Q 014646          157 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  236 (421)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (421)
                                ++..++..++.+++.         .......+..++++.++......++.....+....+.|.|+.+..+
T Consensus       221 ----------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T d1pw4a_         221 ----------NDYPDDYNEKAEQEL---------TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  281 (447)
T ss_dssp             ----------CC----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             ----------hhcccchhhcccccc---------chhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccc
Confidence                      000000000000000         0001235567788999988888888888888999999999999888


Q ss_pred             cchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHHHHHhc
Q 014646          237 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF--CLSSLYGFLALFTVGELLVFA  313 (421)
Q Consensus       237 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  313 (421)
                      .+.... ....+..+..+++.++.+++.||.+++...  ........+.........  ...+.+...+..++.+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  359 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG  359 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH--HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred             cccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc--cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            886554 445677788899999999999999987422  111111111111111111  123455555556666666666


Q ss_pred             cccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          314 TQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ..+....+..+.+|++.|+++.|+.+...+..|.+++|.+.|++.|..| +...+++...+.+++.++..
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            6777788889999999999999999777777567778999999999877 65667666665555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.1e-26  Score=205.81  Aligned_cols=334  Identities=13%  Similarity=-0.003  Sum_probs=218.0

Q ss_pred             ccccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHH----HHHHHHhhhhhhhhcccccccccccCCC--
Q 014646            2 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLVGVGEASFISLAAPFIDDNAPV--   75 (421)
Q Consensus         2 lg~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--   75 (421)
                      +++.++++++|+++||+|||++++++..+..++..+..+..+....    ++.+.+.+.+.+...........+..++  
T Consensus        54 l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (417)
T d1pv7a_          54 LFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchh
Confidence            4678899999999999999999999999999998888887766554    4455555555555554444444433332  


Q ss_pred             CCchhHHHHHHhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccccccccCCcccccchhhhccccc
Q 014646           76 PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  155 (421)
Q Consensus        76 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  155 (421)
                      +++.+..+........+..+++.+++.+.+. +|+..+........+..++.++..|+.++...++++.+...       
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  205 (417)
T d1pv7a_         134 RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH-------  205 (417)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC-------
T ss_pred             hhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc-------
Confidence            2345567778888888999999999988765 56666666666666666666666665443321111111000       


Q ss_pred             ccccCCCccccccchhhhhhhhhcccccchhhhhhhhhhhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Q 014646          156 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN--  233 (421)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  233 (421)
                                             +.           ......+...+++..+....................+.+...  
T Consensus       206 -----------------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T d1pv7a_         206 -----------------------SA-----------FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             -----------------------CC-----------CCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             -----------------------cc-----------ccccccccccccccccchhhhhHHHHHHHHhhhccccccccccc
Confidence                                   00           000112222233333333322222222222222222222211  


Q ss_pred             -hhccchh-hHHHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 014646          234 -IYHMSNA-DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLV  311 (421)
Q Consensus       234 -~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (421)
                       ..+.+.. .........++..++..+.+++.||.+++     +.+.....+..+..+.....++.+...+...+.+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence             1112221 22334556677888899999999999998     7777777777777777777788888888888888888


Q ss_pred             hccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHHHHHHHhh
Q 014646          312 FATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFFLAAGIWF  383 (421)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (421)
                      +...+....+..+.+|++.|+++.++.+...+.+|..++|.+.|++.|..| +...+++.+++.++..++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999986445454588899999999999987 66777777766655554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.2e-13  Score=123.05  Aligned_cols=154  Identities=15%  Similarity=0.066  Sum_probs=114.5

Q ss_pred             HHHHHhhhHHHHhhccchhhH-HHHhhHhHHHHHHHhHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh----ch
Q 014646          222 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCL----SS  296 (421)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  296 (421)
                      .+....|. +++ .+.+..+. ...+...++..++.++.|+++||+|||     +.+..+.++..+..++....    .+
T Consensus        43 ~~~~~~p~-~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (447)
T d1pw4a_          43 NFALAMPY-LVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR-----VFLPAGLILAAAVMLFMGFVPWATSS  115 (447)
T ss_dssp             SHHHHHHH-TTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred             HHHHHHHH-HHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHhhccccchhhhh
Confidence            34444553 444 56665555 445778889999999999999999999     77766666665555444332    35


Q ss_pred             hHHHHHHHHHHHHHHhccccchhhhhhcccCcchhHHHHHHHHHHHHHhccCCchhHHHHhhhhhhchhhhhhHHHHHHH
Q 014646          297 LYGFLALFTVGELLVFATQAPVNYVCLHSVKPSLRALSMAISTVSIHIFGDVPSSPLVGVLQDHVNNWRKTTLALTSIFF  376 (421)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  376 (421)
                      .+...+...+.+++.+...+....++.+.+|+++|++++++.+..... |..++|.+.+.+.+..++|+..++..+...+
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  194 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV-GGGIPPLLFLLGMAWFNDWHAALYMPAFCAI  194 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccch-hhhhhhhhhhhHhhhhhcccccchhhhhhHH
Confidence            566677777788888888888899999999999999999999766665 8899998888888877778888877776655


Q ss_pred             HHHHHhh
Q 014646          377 LAAGIWF  383 (421)
Q Consensus       377 ~~~~~~~  383 (421)
                      +..++.+
T Consensus       195 ~~~~~~~  201 (447)
T d1pw4a_         195 LVALFAF  201 (447)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.3e-13  Score=122.77  Aligned_cols=131  Identities=8%  Similarity=0.001  Sum_probs=119.7

Q ss_pred             cccchhhHHHhhhhhcCchHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhhhhhhhcccccccccccCCCCCchhHH
Q 014646            3 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL   82 (421)
Q Consensus         3 g~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~   82 (421)
                      +..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+|+++|+++.
T Consensus       271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (417)
T d1pv7a_         271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred             ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HhHHHHHhHHHHHHHHHhhcccchhHHHHHhHHHHHHHHHHHHhcccc
Q 014646           83 SMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  133 (421)
Q Consensus        83 ~~~-~~~~~~G~~~g~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~p~  133 (421)
                      ++. +....+|..++|.++|++.+..||+..|++.+++.++..++.++..++
T Consensus       351 ~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            975 567789999999999999999999999999999888887777776643