Citrus Sinensis ID: 014652


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MVVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHEEHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
MVVKLCCLSHVIgemfsedywpiyAVAGGVGALLGWMWLLLlgspanqmLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGtagvvasdmddgGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIhdgrdsvsmphnplvKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIrskignnecLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLItgtcagawtytkwhdRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYIcyaedpllihRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MVVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MVVKLCCLSHVIGEMFSEDYWPIYavaggvgallgwmwllllgSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRwwlllvlsvslFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTamlmgmvlvglamvvvESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
*VVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQY************************
**VKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETL******************************
MVVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRF**********
MVVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSA*********************
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVKLCCLSHVIGEMFSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.821 0.623 0.289 4e-37
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.700 0.575 0.237 2e-19
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.553 0.433 0.269 7e-19
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.570 0.433 0.258 8e-19
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.539 0.410 0.275 6e-17
Q5AB93518 Protein PNS1 OS=Candida a N/A no 0.546 0.444 0.270 8e-17
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.539 0.377 0.261 6e-16
Q870V7554 Protein PNS1 OS=Neurospor N/A no 0.733 0.557 0.248 8e-16
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.760 0.560 0.249 1e-15
Q4WYG7537 Protein pns1 OS=Neosartor yes no 0.565 0.443 0.249 1e-15
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 189/370 (51%), Gaps = 24/370 (6%)

Query: 36  WMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFF-WG-----VAFATAAALQFL 89
           W WL L  + A  ++K S      +   + ++  +C  FF WG     + FA  A    L
Sbjct: 199 WAWLKLAANHAESLIKYS------FFGAMGLMIGYCVFFFVWGAIYLGIIFAIMAFFIIL 252

Query: 90  YVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMD 149
           + IS   R+ FT  +L  AV ++   P V R  YV + +  +W  +W  G+A    + + 
Sbjct: 253 FYISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIVW--GSAFARVNMVY 310

Query: 150 DGG-RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRY 208
            G  +  + + L  +L+W   V+ NT+H  VSG++       G + V MPHNP + S R 
Sbjct: 311 TGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVGMPHNPTLGSARR 370

Query: 209 AVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFH----LVETLVRF 264
           A+TTS GSIC+GSL  + I TLR+  + +   I N   ++  + ++F+    ++ ++V+F
Sbjct: 371 ALTTSFGSICFGSLIISLIETLRYLSQMM---INNRNVVVKIIGYIFNCILSMLSSIVQF 427

Query: 265 FNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCA 324
           FN YA+  +A+YGK F  SA+  + +F++     ++  +  G  + +G +V  L+  +  
Sbjct: 428 FNTYAFTHVAIYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLL-SIL 486

Query: 325 GAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFF 384
           GA     + D  V  G+ A+ +G +++   + VV S+  S+++CY  +P ++     + +
Sbjct: 487 GALISIPF-DMSVYGGALALFIGYLVIITNLEVVYSSTISLFVCYVMEPEVLAHTKPQLY 545

Query: 385 NQMSETLHQR 394
              S T H R
Sbjct: 546 QLYSSTYHLR 555





Dictyostelium discoideum (taxid: 44689)
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AB93|PNS1_CANAL Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q870V7|PNS1_NEUCR Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WYG7|PNS1_ASPFU Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
255576509497 Protein PNS1, putative [Ricinus communis 0.964 0.816 0.869 0.0
225423919504 PREDICTED: CTL-like protein DDB_G0274487 0.961 0.803 0.837 0.0
356534376440 PREDICTED: CTL-like protein DDB_G0274487 0.961 0.920 0.827 0.0
356574175493 PREDICTED: CTL-like protein DDB_G0274487 0.961 0.821 0.819 0.0
449434644502 PREDICTED: CTL-like protein DDB_G0274487 0.952 0.798 0.807 0.0
357488431486 Choline transporter-like protein 5-A [Me 0.957 0.829 0.821 0.0
356498302459 PREDICTED: CTL-like protein DDB_G0274487 0.945 0.867 0.824 0.0
297845612488 hypothetical protein ARALYDRAFT_313379 [ 0.931 0.803 0.791 1e-168
186478872430 plasma-membrane choline transporter-like 0.931 0.911 0.788 1e-167
15222609488 plasma-membrane choline transporter-like 0.931 0.803 0.788 1e-167
>gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/406 (86%), Positives = 380/406 (93%)

Query: 16  FSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFF 75
            +EDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHILTTYLAVISVLCFWC+QFF
Sbjct: 92  LTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHILTTYLAVISVLCFWCEQFF 151

Query: 76  WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGI 135
           WGVAFA  AALQFLYVISVI+RL FTMLVLQKAVKMVWSLPEV RVAY FM VMLLWM I
Sbjct: 152 WGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLPEVMRVAYAFMLVMLLWMAI 211

Query: 136 WSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSV 195
           WSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGR++ 
Sbjct: 212 WSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGREAA 271

Query: 196 SMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLF 255
           SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG+RSKIG NECLLCCVDFLF
Sbjct: 272 SMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGLRSKIGKNECLLCCVDFLF 331

Query: 256 HLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIV 315
           HLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGVEALVAYDCSGAVLLMGT++
Sbjct: 332 HLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTVL 391

Query: 316 GGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLL 375
            GLITGTC+G WT  KW+DRV+MVGSTAMLMGMVLVG+AMVVVESAVTSIYICYAEDPLL
Sbjct: 392 SGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGMVLVGVAMVVVESAVTSIYICYAEDPLL 451

Query: 376 IHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV 421
           IHRWDAEFFNQ+SETLHQRLQ+RSARAREV+++NRFD H +ES+ V
Sbjct: 452 IHRWDAEFFNQLSETLHQRLQHRSARAREVVSSNRFDIHIRESIPV 497




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186478872|ref|NP_001117355.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192514|gb|AEE30635.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.928 0.801 0.704 2.5e-145
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.781 0.592 0.270 3.6e-33
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.733 0.543 0.266 1.3e-27
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.817 0.713 0.228 2e-15
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.817 0.713 0.228 2e-15
DICTYBASE|DDB_G0269978506 DDB_G0269978 [Dictyostelium di 0.641 0.533 0.229 3.5e-15
CGD|CAL0005194518 orf19.6077 [Candida albicans ( 0.320 0.260 0.333 4.9e-15
UNIPROTKB|Q5AB93518 PNS1 "Protein PNS1" [Candida a 0.320 0.260 0.333 4.9e-15
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.543 0.429 0.274 1.2e-14
SGD|S000005687539 PNS1 "Protein of unknown funct 0.320 0.250 0.321 2.9e-13
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 276/392 (70%), Positives = 305/392 (77%)

Query:    17 SEDYWPIYXXXXXXXXXXXXXXXXXXXSPANQMLKISVHILTTYLAVISVLCFWCDQFFW 76
             +EDYWP+Y                   S AN+M+K+SVHILTTYLAV+SVLCFWC  FFW
Sbjct:    95 TEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFW 154

Query:    77 GVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIW 136
             G AFA  + LQFLYVISVIDRL FTMLVL+KA+K+VW LP+V  VA+ F  VMLLWM +W
Sbjct:   155 GGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLW 214

Query:   137 SFGTAGVVASDMDDGGRXXXXXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SV 195
             SFG AGVVAS M D GR           FWTGAVLCNTVHVIVSGMVF VL H G++ S 
Sbjct:   215 SFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESS 274

Query:   196 SMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLF 255
             S+P + LV SLRYAVTTS GSICYGSLFTAAIRTLRWEIRG RSKI  NECLLCCVDFLF
Sbjct:   275 SLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLF 334

Query:   256 HLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIV 315
             HLVETLVRFFNKYAYVQIAVYGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI 
Sbjct:   335 HLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIF 394

Query:   316 GGLITGTCAGAWTYTKWHDRVVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLL 375
             GGLITG+C G W + K+ DRV+MV ST                ESAVTSIYIC+AEDPLL
Sbjct:   395 GGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLL 454

Query:   376 IHRWDAEFFNQMSETLHQRLQYRSARAREVLT 407
             I RWDA+F+ +MSE LH+RLQ+RS+RAREVLT
Sbjct:   455 IQRWDADFYTEMSEVLHRRLQHRSSRAREVLT 486




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 4e-76
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  239 bits (612), Expect = 4e-76
 Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 75  FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 134
              + F     +  L +I +  R+   + +L+ A   V   P +  V  +    +  ++ 
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 135 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 179
           +W      +  S     ++GG               LL+ L   LFWT  V+    HV +
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 180 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 239
           +G+V            +MP  P + S + A+T S GSIC+GSL  A I+ +R  +  +R 
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178

Query: 240 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 294
           K+  ++      LLCC+      +E  V + N+ AYV IA+YGKGF  SA+D WEL +  
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238

Query: 295 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 351
           G+ ALV     G VL +G +    +TG  A  W     +  +    +  + A L+  ++ 
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298

Query: 352 GLAMVVVESAVTSIYICYAEDPLLIHRWD 380
            + M V ES V +I++C+AEDP L+    
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=1.8e-70  Score=569.01  Aligned_cols=390  Identities=30%  Similarity=0.485  Sum_probs=334.4

Q ss_pred             hhhhhhhhh--hhccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--h-----h------
Q 014652            8 LSHVIGEMF--SEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFW--C-----D------   72 (421)
Q Consensus         8 ~~~~~~~~~--~~~~~~~~~~~~~ia~vls~~~l~llr~~~~~~v~~~i~~~~~~~~~~~~~~~~--~-----~------   72 (421)
                      ..+++.+.+  .-.+|+.+...+.++++++.+++..+|.+++.++|..+.++...+......+++  .     +      
T Consensus       134 ~~~v~~~i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~  213 (577)
T KOG1362|consen  134 AVSVLHRIFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFT  213 (577)
T ss_pred             hHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecc
Confidence            457788888  668999999999999999999999999999999999865433332222222321  1     0      


Q ss_pred             ---------h----HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014652           73 ---------Q----FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFG  139 (421)
Q Consensus        73 ---------~----~~~~ii~~i~~~i~~l~~~~~r~rI~~a~~ilk~a~~~i~~~p~l~~~~~~~~~l~~~~~~~w~~~  139 (421)
                               +    ...|+++.++.++.+++.+.+|+||+++++++|+|+|++.+.|++.+.|....++..+|.++|+.+
T Consensus       214 ~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~  293 (577)
T KOG1362|consen  214 SSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFV  293 (577)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0    137899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhcccccc----------cCCCchHHHHHHHHHH-HHHHHHHHhhccccceeceeeeeeeccCCCCCCCCCchHHHHHHH
Q 014652          140 TAGVVASD----------MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRY  208 (421)
Q Consensus       140 ~~g~~~~~----------~~~~~~~~~~~~~lf~-~~W~~~fl~~~~~~tvAg~v~~WYF~~~~~~~~~~~~pv~~s~~r  208 (421)
                      ..+..+.+          .++++...+..++++. ++|+.+|+.|++|+++||++++|||++++  +++|..|+..|++|
T Consensus       294 ~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~r  371 (577)
T KOG1362|consen  294 ALFLVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRR  371 (577)
T ss_pred             HHHHhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHH
Confidence            77766555          1222222233334444 99999999999999999999999999985  78999999999999


Q ss_pred             HHhhcchhhhhhhHHHHHHHHHHHHHHHHHhccCC--c---hhHHHhHHHHHHHHHHHHHHhcHHHHHHHHhcCCChhHH
Q 014652          209 AVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRS  283 (421)
Q Consensus       209 a~~~hlGSia~GSliv~ii~~ir~il~~l~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~S  283 (421)
                      +++||+||+|+|||++++++++|.+++|++++.|+  |   ++++||++||+||+|++++++|||||+++|+||||||+|
T Consensus       372 a~~yhlGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~S  451 (577)
T KOG1362|consen  372 ALRYHLGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTS  451 (577)
T ss_pred             HHHHhccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHH
Confidence            99999999999999999999999999999998764  3   589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhhhhcchhhHHHH-HHHHHHHHHHHhhHHHHHHhhccC--chhHHHHHHHHHH-HHHHHHhHHHHH
Q 014652          284 ARDAWELFQSTGVEALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVE  359 (421)
Q Consensus       284 ak~a~~Li~~n~~~~~~~~~~~~~~l~-lg~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ig-~~i~~~f~~v~~  359 (421)
                      ||++|++++|| ...+++.|.++++++ +||+.++ +++.+++++.....++  +...+.+.++++| |++++.|+++++
T Consensus       452 Akda~~ll~~N-v~~vv~~d~vs~~llflgk~l~~-~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~  529 (577)
T KOG1362|consen  452 AKDAWELLRRN-VLRVVDVDLVSDFLLFLGKLLGA-IGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLE  529 (577)
T ss_pred             HHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 666799999999876 5776554 4444577766666666  6677888899999 999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhccccc
Q 014652          360 SAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARA  402 (421)
Q Consensus       360 ~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~  402 (421)
                      |+|||+|+||+||||.||++ ||+|++|++.+++..+++++.+
T Consensus       530 m~VdtlflCf~eD~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~  571 (577)
T KOG1362|consen  530 MCVDTLFLCFAEDPESNDGS-PEKPQFMSEQLLEILGRSNKAP  571 (577)
T ss_pred             HHHHHhhheeEecHhhcCCC-CCcceeeeHHHHHhcccccccc
Confidence            99999999999999999999 9999999999999999888744



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00