Citrus Sinensis ID: 014652
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 421 | ||||||
| 255576509 | 497 | Protein PNS1, putative [Ricinus communis | 0.964 | 0.816 | 0.869 | 0.0 | |
| 225423919 | 504 | PREDICTED: CTL-like protein DDB_G0274487 | 0.961 | 0.803 | 0.837 | 0.0 | |
| 356534376 | 440 | PREDICTED: CTL-like protein DDB_G0274487 | 0.961 | 0.920 | 0.827 | 0.0 | |
| 356574175 | 493 | PREDICTED: CTL-like protein DDB_G0274487 | 0.961 | 0.821 | 0.819 | 0.0 | |
| 449434644 | 502 | PREDICTED: CTL-like protein DDB_G0274487 | 0.952 | 0.798 | 0.807 | 0.0 | |
| 357488431 | 486 | Choline transporter-like protein 5-A [Me | 0.957 | 0.829 | 0.821 | 0.0 | |
| 356498302 | 459 | PREDICTED: CTL-like protein DDB_G0274487 | 0.945 | 0.867 | 0.824 | 0.0 | |
| 297845612 | 488 | hypothetical protein ARALYDRAFT_313379 [ | 0.931 | 0.803 | 0.791 | 1e-168 | |
| 186478872 | 430 | plasma-membrane choline transporter-like | 0.931 | 0.911 | 0.788 | 1e-167 | |
| 15222609 | 488 | plasma-membrane choline transporter-like | 0.931 | 0.803 | 0.788 | 1e-167 |
| >gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/406 (86%), Positives = 380/406 (93%)
Query: 16 FSEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFF 75
+EDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHILTTYLAVISVLCFWC+QFF
Sbjct: 92 LTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHILTTYLAVISVLCFWCEQFF 151
Query: 76 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGI 135
WGVAFA AALQFLYVISVI+RL FTMLVLQKAVKMVWSLPEV RVAY FM VMLLWM I
Sbjct: 152 WGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLPEVMRVAYAFMLVMLLWMAI 211
Query: 136 WSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSV 195
WSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGR++
Sbjct: 212 WSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGREAA 271
Query: 196 SMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLF 255
SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG+RSKIG NECLLCCVDFLF
Sbjct: 272 SMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGLRSKIGKNECLLCCVDFLF 331
Query: 256 HLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIV 315
HLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGVEALVAYDCSGAVLLMGT++
Sbjct: 332 HLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTVL 391
Query: 316 GGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLL 375
GLITGTC+G WT KW+DRV+MVGSTAMLMGMVLVG+AMVVVESAVTSIYICYAEDPLL
Sbjct: 392 SGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGMVLVGVAMVVVESAVTSIYICYAEDPLL 451
Query: 376 IHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV 421
IHRWDAEFFNQ+SETLHQRLQ+RSARAREV+++NRFD H +ES+ V
Sbjct: 452 IHRWDAEFFNQLSETLHQRLQHRSARAREVVSSNRFDIHIRESIPV 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|186478872|ref|NP_001117355.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192514|gb|AEE30635.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 421 | ||||||
| TAIR|locus:2031235 | 488 | AT1G25500 [Arabidopsis thalian | 0.928 | 0.801 | 0.704 | 2.5e-145 | |
| DICTYBASE|DDB_G0274487 | 555 | DDB_G0274487 "Protein PNS1" [D | 0.781 | 0.592 | 0.270 | 3.6e-33 | |
| TAIR|locus:2177110 | 569 | AT5G13760 "AT5G13760" [Arabido | 0.733 | 0.543 | 0.266 | 1.3e-27 | |
| TAIR|locus:2079444 | 482 | AT3G03700 [Arabidopsis thalian | 0.817 | 0.713 | 0.228 | 2e-15 | |
| TAIR|locus:2100865 | 482 | AT3G04440 [Arabidopsis thalian | 0.817 | 0.713 | 0.228 | 2e-15 | |
| DICTYBASE|DDB_G0269978 | 506 | DDB_G0269978 [Dictyostelium di | 0.641 | 0.533 | 0.229 | 3.5e-15 | |
| CGD|CAL0005194 | 518 | orf19.6077 [Candida albicans ( | 0.320 | 0.260 | 0.333 | 4.9e-15 | |
| UNIPROTKB|Q5AB93 | 518 | PNS1 "Protein PNS1" [Candida a | 0.320 | 0.260 | 0.333 | 4.9e-15 | |
| ASPGD|ASPL0000039512 | 533 | AN10377 [Emericella nidulans ( | 0.543 | 0.429 | 0.274 | 1.2e-14 | |
| SGD|S000005687 | 539 | PNS1 "Protein of unknown funct | 0.320 | 0.250 | 0.321 | 2.9e-13 |
| TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 276/392 (70%), Positives = 305/392 (77%)
Query: 17 SEDYWPIYXXXXXXXXXXXXXXXXXXXSPANQMLKISVHILTTYLAVISVLCFWCDQFFW 76
+EDYWP+Y S AN+M+K+SVHILTTYLAV+SVLCFWC FFW
Sbjct: 95 TEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFW 154
Query: 77 GVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIW 136
G AFA + LQFLYVISVIDRL FTMLVL+KA+K+VW LP+V VA+ F VMLLWM +W
Sbjct: 155 GGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLW 214
Query: 137 SFGTAGVVASDMDDGGRXXXXXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SV 195
SFG AGVVAS M D GR FWTGAVLCNTVHVIVSGMVF VL H G++ S
Sbjct: 215 SFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESS 274
Query: 196 SMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLF 255
S+P + LV SLRYAVTTS GSICYGSLFTAAIRTLRWEIRG RSKI NECLLCCVDFLF
Sbjct: 275 SLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLF 334
Query: 256 HLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIV 315
HLVETLVRFFNKYAYVQIAVYGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI
Sbjct: 335 HLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIF 394
Query: 316 GGLITGTCAGAWTYTKWHDRVVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLL 375
GGLITG+C G W + K+ DRV+MV ST ESAVTSIYIC+AEDPLL
Sbjct: 395 GGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLL 454
Query: 376 IHRWDAEFFNQMSETLHQRLQYRSARAREVLT 407
I RWDA+F+ +MSE LH+RLQ+RS+RAREVLT
Sbjct: 455 IQRWDADFYTEMSEVLHRRLQHRSSRAREVLT 486
|
|
| DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 421 | |||
| pfam04515 | 327 | pfam04515, Choline_transpo, Plasma-membrane cholin | 4e-76 |
| >gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 4e-76
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)
Query: 75 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 134
+ F + L +I + R+ + +L+ A V P + V + + ++
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60
Query: 135 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 179
+W + S ++GG LL+ L LFWT V+ HV +
Sbjct: 61 LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120
Query: 180 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 239
+G+V +MP P + S + A+T S GSIC+GSL A I+ +R + +R
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178
Query: 240 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 294
K+ ++ LLCC+ +E V + N+ AYV IA+YGKGF SA+D WEL +
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238
Query: 295 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 351
G+ ALV G VL +G + +TG A W + + + + A L+ ++
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298
Query: 352 GLAMVVVESAVTSIYICYAEDPLLIHRWD 380
+ M V ES V +I++C+AEDP L+
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327
|
This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 421 | |||
| KOG1362 | 577 | consensus Choline transporter-like protein [Lipid | 100.0 | |
| PF04515 | 334 | Choline_transpo: Plasma-membrane choline transport | 100.0 |
| >KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=569.01 Aligned_cols=390 Identities=30% Similarity=0.485 Sum_probs=334.4
Q ss_pred hhhhhhhhh--hhccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--h-----h------
Q 014652 8 LSHVIGEMF--SEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFW--C-----D------ 72 (421)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~~ia~vls~~~l~llr~~~~~~v~~~i~~~~~~~~~~~~~~~~--~-----~------ 72 (421)
..+++.+.+ .-.+|+.+...+.++++++.+++..+|.+++.++|..+.++...+......+++ . +
T Consensus 134 ~~~v~~~i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~ 213 (577)
T KOG1362|consen 134 AVSVLHRIFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFT 213 (577)
T ss_pred hHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecc
Confidence 457788888 668999999999999999999999999999999999865433332222222321 1 0
Q ss_pred ---------h----HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014652 73 ---------Q----FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFG 139 (421)
Q Consensus 73 ---------~----~~~~ii~~i~~~i~~l~~~~~r~rI~~a~~ilk~a~~~i~~~p~l~~~~~~~~~l~~~~~~~w~~~ 139 (421)
+ ...|+++.++.++.+++.+.+|+||+++++++|+|+|++.+.|++.+.|....++..+|.++|+.+
T Consensus 214 ~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~ 293 (577)
T KOG1362|consen 214 SSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFV 293 (577)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 137899999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccc----------cCCCchHHHHHHHHHH-HHHHHHHHhhccccceeceeeeeeeccCCCCCCCCCchHHHHHHH
Q 014652 140 TAGVVASD----------MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRY 208 (421)
Q Consensus 140 ~~g~~~~~----------~~~~~~~~~~~~~lf~-~~W~~~fl~~~~~~tvAg~v~~WYF~~~~~~~~~~~~pv~~s~~r 208 (421)
..+..+.+ .++++...+..++++. ++|+.+|+.|++|+++||++++|||++++ +++|..|+..|++|
T Consensus 294 ~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~r 371 (577)
T KOG1362|consen 294 ALFLVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRR 371 (577)
T ss_pred HHHHhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHH
Confidence 77766555 1222222233334444 99999999999999999999999999985 78999999999999
Q ss_pred HHhhcchhhhhhhHHHHHHHHHHHHHHHHHhccCC--c---hhHHHhHHHHHHHHHHHHHHhcHHHHHHHHhcCCChhHH
Q 014652 209 AVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRS 283 (421)
Q Consensus 209 a~~~hlGSia~GSliv~ii~~ir~il~~l~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~S 283 (421)
+++||+||+|+|||++++++++|.+++|++++.|+ | ++++||++||+||+|++++++|||||+++|+||||||+|
T Consensus 372 a~~yhlGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~S 451 (577)
T KOG1362|consen 372 ALRYHLGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTS 451 (577)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHH
Confidence 99999999999999999999999999999998764 3 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhhhcchhhHHHH-HHHHHHHHHHHhhHHHHHHhhccC--chhHHHHHHHHHH-HHHHHHhHHHHH
Q 014652 284 ARDAWELFQSTGVEALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVE 359 (421)
Q Consensus 284 ak~a~~Li~~n~~~~~~~~~~~~~~l~-lg~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ig-~~i~~~f~~v~~ 359 (421)
||++|++++|| ...+++.|.++++++ +||+.++ +++.+++++.....++ +...+.+.++++| |++++.|+++++
T Consensus 452 Akda~~ll~~N-v~~vv~~d~vs~~llflgk~l~~-~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~ 529 (577)
T KOG1362|consen 452 AKDAWELLRRN-VLRVVDVDLVSDFLLFLGKLLGA-IGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLE 529 (577)
T ss_pred HHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 666799999999876 5776554 4444577766666666 6677888899999 999999999999
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhccccc
Q 014652 360 SAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARA 402 (421)
Q Consensus 360 ~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~ 402 (421)
|+|||+|+||+||||.||++ ||+|++|++.+++..+++++.+
T Consensus 530 m~VdtlflCf~eD~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~ 571 (577)
T KOG1362|consen 530 MCVDTLFLCFAEDPESNDGS-PEKPQFMSEQLLEILGRSNKAP 571 (577)
T ss_pred HHHHHhhheeEecHhhcCCC-CCcceeeeHHHHHhcccccccc
Confidence 99999999999999999999 9999999999999999888744
|
|
| >PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00