Citrus Sinensis ID: 014660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcccccccccccccHHHHHHHccccccccccccccccEcccccccHHHHHHHHcccccccEEEcc
Coil and Loop (DISEMBL)
mgnnedgksfksekpsspppsdqgnihmytDWAAMQayygprvaippyynspiasghapqpymwgpaqpmmppygapyaaiystggvyahpavplgshahnhgvptspaavtplnteaptkssgnadRGLAKKLKGLDGLAMSIGnasaesaeggaeqrpsqseadgstdgsdgntvragqsrkkrsregtpiaggdgktdiqstpvpvgvnatpdKVLATAvaptsvsgkpvgpvlspgmptklelrnapgmnvkasptsvpqpcavlppetwiQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAqlgnkqeivlnedkrvtpvsteNLLSRvnnsgtvdrnmeegghlfeknsnsgaklhqlldasprtdavaag
Flexible Loop (DISEMBL)
mgnnedgksfksekpsspppsdQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTeaptkssgnadrGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSqseadgstdgsdgntvragqsrkkrsregtpiaggdgktdiqstpvPVGVNATPDKVLATAVAptsvsgkpvgpvlspgMPTKLELRNAPGMNVKASptsvpqpcavlppetwiqnerelkrerrkqsnresarrsrlrkqaeaeelsrkvdslidENASLKSEINQLSENSEKLRQENAALLEKLKsaqlgnkqeivlnedkrvtpvstenllsrvnnsgtvDRNMEEGGHLFEKNSNSGAKLhqlldasprtdavaag
Low Complexity Region (SEG)
MGNNEDGksfksekpsspppsDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWgpaqpmmppygapyaaIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNadrglakklkgldglaMsignasaesaeggaeQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Disordered region (IsUnstruct)
*************************IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPL**************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
******************************DWAAMQAYYGPRVAIP**********************PMMPPYGAPYAAIYSTGGVYAHPAV*********************************************************************************************************************************************************************************************************************ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL********************************************************************PR***V**G
Disordered Region (DISEMBL)
**********************QGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE*********DRGLAKKLKGLDGLAMSIGNA*********************************************IAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNER*******************************KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDAS*********
Disordered Region (DISPRO)
************************NIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA*************************************************************************************************************************KPVGPVLSPGMPTK*******************************************************RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA***********************************************************DA*PRTD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q99089	411	Common plant regulatory f	N/A	no	0.961	0.985	0.531	1e-115
P42776	382	G-box-binding factor 3 OS	yes	no	0.874	0.963	0.535	1e-101
P42775	360	G-box-binding factor 2 OS	no	no	0.838	0.980	0.457	1e-78
Q99142	265	Transcriptional activator	N/A	no	0.603	0.958	0.548	5e-66
P42774	315	G-box-binding factor 1 OS	no	no	0.672	0.898	0.352	4e-36
Q99091	296	Light-inducible protein C	N/A	no	0.619	0.881	0.280	2e-20
P25032	354	DNA-binding protein EMBP-	N/A	no	0.173	0.206	0.589	1e-16
P23922	349	Transcription factor HBP-	N/A	no	0.218	0.263	0.457	8e-15
P24068	151	Ocs element-binding facto	N/A	no	0.197	0.549	0.395	8e-07
Q54Y73	834	Probable basic-leucine zi	yes	no	0.149	0.075	0.421	3e-06

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/427 (53%), Positives = 296/427 (69%), Gaps = 22/427 (5%)

Query: 1   MGNNEDGKSFKSEK---PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN +D K+ K EK   P  P   DQ N H+Y DWAAMQAYYGPRVA+PPY+N  +ASG 
Sbjct: 1   MGNTDDVKAVKPEKLSSPPPPAAPDQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQ 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           +P PYMWGP QP+MPPYG PYAA+Y+ GGVYAHP VPL              A +P++ +
Sbjct: 61  SPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPL--------------AASPMSMD 106

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
              KSSG  + GL KKLKG D LAMSIGN  A+S+EG  E+  SQS E +GS+DGS+ N+
Sbjct: 107 THAKSSGTNEHGLIKKLKGHDDLAMSIGNGKADSSEGEMERTLSQSKETEGSSDGSNENS 166

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
            RA  + +KR R+  P   G+ K + QS+ +P    A  +K+L   VA   V+GK VG V
Sbjct: 167 KRAAVNGRKRGRDEAPNMIGEVKIETQSSVIP-SPRAKSEKLLGITVATPMVAGKVVGTV 225

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +SP M + LEL+++P  +   SP    QP  ++P ++W+ N+R+LKRERRKQSNRESARR
Sbjct: 226 VSPSMTSSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARR 285

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAEAEEL+ KVDSL  EN +LK+EIN+L+  +EKL  +N+ LLE +K+AQ     
Sbjct: 286 SRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQAERAA 345

Query: 357 EIVL--NEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPR 414
           ++ L  N +K+ + +ST NLLSRV+N+G+ DR+  E   ++EK + SGAKLHQLLDA+PR
Sbjct: 346 DVGLGNNNEKKASTLSTANLLSRVDNAGSGDRDEGE-SDVYEKTTKSGAKLHQLLDANPR 404

Query: 415 TDAVAAG 421
           TDAVAAG
Sbjct: 405 TDAVAAG 411

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/413 (53%), Positives = 270/413 (65%), Gaps = 45/413 (10%)

Query: 11  KSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWGPAQP 69
           KS+KPSSPP  DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW P Q 
Sbjct: 13  KSDKPSSPP-VDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNP-QH 70

Query: 70  MMPPYGAPYAAIY-STGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADR 128
           MM PYGAPYAA+Y   GGVYAHP +P+GS       P      T L+ + PTKS+GN D 
Sbjct: 71  MMSPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDN 130

Query: 129 GLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVRAGQSRKKRSR 188
           GL KKLK  DGLAMS+GN + E+     ++  + SE DGSTDGSDGNT  A + + KRSR
Sbjct: 131 GLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSR 190

Query: 189 EGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELR 248
           EGTP    DGK  +Q++       ++ D    T V     SG     +LSPG    +   
Sbjct: 191 EGTPTK--DGKQLVQASSFHSVSPSSGD----TGVKLIQGSGA----ILSPG----VSAN 236

Query: 249 NAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEEL 308
           + P M+         Q  A++PPETW+QNERELKRERRKQSNRESARRSRLRKQAE EEL
Sbjct: 237 SNPFMS---------QSLAMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEEL 287

Query: 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTP 368
           +RKV++L  EN +L+SE+NQL+E S+KLR  NA LL+KLK ++           +KRV  
Sbjct: 288 ARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKLKCSE----------PEKRV-- 335

Query: 369 VSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTDAVAAG 421
               N+LSRV NSG  D+N  +G    + +SNS +KLHQLLD  PR  AVAAG
Sbjct: 336 --PANMLSRVKNSGAGDKNKNQG----DNDSNSTSKLHQLLDTKPRAKAVAAG 382

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score =  293 bits (751), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 195/426 (45%), Positives = 245/426 (57%), Gaps = 73/426 (17%)

Query: 1   MGNNEDGK-SFKSEKPSSPPPSDQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
           MG+NE+G  +  S+KPS     +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct: 1   MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query: 59  PQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
           P PYMW    PMM PYGAPY      GGVYAHP V +GS        ++    TPL  +A
Sbjct: 61  PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query: 119 PTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEA--DGSTDGSDGNT 176
           P  S+GN+D G  KKLK  DGLAMSI N    SAE  + +  S   +  DGS++GSDGNT
Sbjct: 121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
              G+  +++ R+    + G+  +   S P+  G N  PD  + T V             
Sbjct: 181 T-GGEQSRRKRRQQRSPSTGERPSSQNSLPL-RGENEKPDVTMGTPV------------- 225

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
               MPT +  +N+ GMN       VPQP        W  NE+E+KRE+RKQSNRESARR
Sbjct: 226 ----MPTAMSFQNSAGMN------GVPQP--------W--NEKEVKREKRKQSNRESARR 265

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAE E+LS KVD+L+ EN SL+S++ QL+  SEKLR EN A+L++LK+   G   
Sbjct: 266 SRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATG--- 322

Query: 357 EIVLNEDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKL--HQLLDASPR 414
                         TENL+SR      VD+N          NS SG+K   HQLL+ASP 
Sbjct: 323 -------------KTENLISR------VDKN----------NSVSGSKTVQHQLLNASPI 353

Query: 415 TDAVAA 420
           TD VAA
Sbjct: 354 TDPVAA 359

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99142|TAF1_TOBAC Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1

 Score =  252 bits (643), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 148/270 (54%), Positives = 180/270 (66%), Gaps = 16/270 (5%)

Query: 85  GGVYAHPAVPLGSHAHNHGVPTSPAAV-----TPLNTEAPTKSSGNADRGLAKKLKGLDG 139
           GGVYAHP VP+GSH   HG+ TSPA         L+ +A  KSS N+DRGL         
Sbjct: 3   GGVYAHPGVPIGSHPPGHGMATSPAVSQAMDGASLSLDASAKSSENSDRGL--------- 53

Query: 140 LAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDG 198
           LAMS+GN SA++ EGGA+   SQS + + STDGSD N     +  KKRSRE TP   GD 
Sbjct: 54  LAMSLGNGSADNIEGGADHGNSQSGDTEDSTDGSDTNGAGVSERSKKRSRETTPDNSGDS 113

Query: 199 KTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKAS 258
           K+ ++       +N   +K +  AV P  V  K +G VLSP M T LE+RN    ++KAS
Sbjct: 114 KSHLRRCQPTGEINDDSEKAI-VAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKAS 172

Query: 259 PTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE 318
           PT+V Q    LP E W+QNERELKRE+RKQSNRESARRSRLRKQAEAEEL+ +V SL  E
Sbjct: 173 PTNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAE 232

Query: 319 NASLKSEINQLSENSEKLRQENAALLEKLK 348
           N +LKSEIN+L ENSEKL+ ENAAL+E+LK
Sbjct: 233 NMTLKSEINKLMENSEKLKLENAALMERLK 262

Trans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.

Nicotiana tabacum (taxid: 4097)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 175/355 (49%), Gaps = 72/355 (20%)

Query: 1   MGNNEDGKSFKSEKPSSP----PPSDQGNIHMYTDWA-AMQAYYGPRVAIPPYYNSPIAS 55
           MG +ED   FK+ KP+S     PP+       Y DW  +MQAYYG      P++ SP+ S
Sbjct: 1   MGTSEDKMPFKTTKPTSSAQEVPPTP------YPDWQNSMQAYYGGGGTPNPFFPSPVGS 54

Query: 56  GHAPQPYMWGPAQPMMPPYG--APYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTP 113
             +P PYMWG    MMPPYG   PY A+Y  G VYAHP++P+            P    P
Sbjct: 55  -PSPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSMPM------------PPNSGP 101

Query: 114 LNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSD 173
            N E P K   +  +      K  +G   ++  +  + A    E     S   GS+D +D
Sbjct: 102 TNKE-PAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASHSDE-----SVTAGSSDEND 155

Query: 174 GNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPV 233
            N  +  Q   ++   G  +A        QST               T     SV  KPV
Sbjct: 156 ENANQQEQGSIRKPSFGQMLADASS----QST---------------TGEIQGSVPMKPV 196

Query: 234 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 293
            P       T L +    GM++ +S   VP           +++ERELKR++RKQSNRES
Sbjct: 197 APG------TNLNI----GMDLWSSQAGVP-----------VKDERELKRQKRKQSNRES 235

Query: 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348
           ARRSRLRKQAE E+L ++V+SL +EN SL+ E+ +LS   +KL+ EN ++ ++L+
Sbjct: 236 ARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQ 290

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 148/349 (42%), Gaps = 88/349 (25%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           M + E+G   K  KP+S           + D  +    Y    A   +Y S + S  +P 
Sbjct: 1   MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYYGGAAPAAFYASTVGSP-SPH 59

Query: 61  PYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
           PYMW      + PYG P  Y A++  GG++ HP            VPT P  + P + E 
Sbjct: 60  PYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPI-----------VPTDP-NLAPTSGEV 107

Query: 119 PTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQSEADGSTDGSDGNTVR 178
             K S    R  AKK  G+ G       +++ + + GAE + + S +D            
Sbjct: 108 GRKISDEKGRTSAKKSIGVSG-------STSFAVDKGAENQKAASSSDNDCPSLSSEN-- 158

Query: 179 AGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLS 238
                           G DG  +++S P+ V              AP ++       V+ 
Sbjct: 159 ----------------GVDGSLEVRSNPLDVA-------------APGAI-------VVH 182

Query: 239 PGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSR 298
            GM                           LP +  + +ERELKR+RRKQSNRESARRSR
Sbjct: 183 DGM---------------------------LP-DQRVNDERELKRQRRKQSNRESARRSR 214

Query: 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347
           LRKQA+++EL  ++D+L  EN  L+  + ++SE   ++  EN ++ E+L
Sbjct: 215 LRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEEL 263

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
           +ERELKRERRKQSNRESARRSRLRKQ E EEL++KV  L   N +L+SE++QL ++ + +
Sbjct: 247 DERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTM 306

Query: 337 RQENAALLEKLKS 349
             EN  L+ K+ S
Sbjct: 307 ETENKKLMGKILS 319

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 2/94 (2%)

Query: 272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
           E W  +ERELK+++RK SNRESARRSRLRKQAE EEL ++ ++L  EN+SL+ E++++ +
Sbjct: 246 EQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKK 303

Query: 332 NSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 365
             E+L  +N +L  KL  +  G   + V + ++R
Sbjct: 304 EYEELLSKNTSLKAKLGESGGGGGSDAVPDMNER 337

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341
           +RE+R+ SNRESARRSRLRKQ   +EL ++V  L  +NA + +    ++    ++ QEN 
Sbjct: 26  RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENT 85

Query: 342 ALLEKLKSAQLGNKQEIVLNEDKRVT 367
            L  + ++A+LG++   V NE  R+ 
Sbjct: 86  VL--RARAAELGDRLRSV-NEVLRLV 108

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 264 QPCAVLPPETWIQ-NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 322
           +P  V+ P T  Q +ER +K++RR   NRESA+ SR+RK+   E+L + +  L  +N+SL
Sbjct: 374 EPVQVVDPPTHNQEDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSL 433

Query: 323 KSEI 326
           K E+
Sbjct: 434 KEEV 437

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
357512481	425	G-box binding factor [Medicago truncatul	0.992	0.983	0.668	1e-154
388501482	425	unknown [Medicago truncatula]	0.992	0.983	0.665	1e-153
255541782	401	Common plant regulatory factor CPRF-1, p	0.938	0.985	0.670	1e-151
359489695	430	PREDICTED: common plant regulatory facto	1.0	0.979	0.702	1e-151
364521140	421	bZIP protein [Medicago sativa]	0.983	0.983	0.656	1e-147
51870705	424	bZip transcription factor [Psophocarpus	0.990	0.983	0.642	1e-145
356560615	424	PREDICTED: common plant regulatory facto	0.990	0.983	0.633	1e-144
169959	423	G-box binding factor, partial [Glycine m	0.988	0.983	0.632	1e-142
357512483	388	G-box binding factor [Medicago truncatul	0.912	0.989	0.677	1e-142
356573189	425	PREDICTED: common plant regulatory facto	0.985	0.976	0.661	1e-140

>gi|357512481|ref|XP_003626529.1| G-box binding factor [Medicago truncatula] gi|355501544|gb|AES82747.1| G-box binding factor [Medicago truncatula]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/428 (66%), Positives = 335/428 (78%), Gaps = 10/428 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSREGTP   G+GKT+ Q + +   + A+ DK++  AVAP  V+G+ VGPV
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAAS-DKMM--AVAPAGVTGQLVGPV 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
            S  M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 ASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENSE+LR ENAAL EK K A+LG  +
Sbjct: 298 SRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENAALKEKFKIAKLGQPK 357

Query: 357 EIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 413
           EI+L   + +R TPVSTENLLSRV NNSG+ DR +E+     +   NSGAKLHQLLDASP
Sbjct: 358 EIILTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVEDENGYCDNKPNSGAKLHQLLDASP 417

Query: 414 RTDAVAAG 421
           R DAVAAG
Sbjct: 418 RADAVAAG 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501482|gb|AFK38807.1| unknown [Medicago truncatula]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/428 (66%), Positives = 334/428 (78%), Gaps = 10/428 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP+G H H+ G+ +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLA SIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLATSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSREGTP   G+GKT+ Q + +   + A+ DK++  AVAP  V+G+ VGPV
Sbjct: 181 SGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAAS-DKMM--AVAPAGVTGQLVGPV 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
            S  M T LELRN+  ++ K +PTS PQP AVLPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 ASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENSE+LR ENAAL EK K A+LG  +
Sbjct: 298 SRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENAALKEKFKIAKLGQPK 357

Query: 357 EIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 413
           EI+L   + +R TPVSTENLLSRV NNSG+ DR +E+     +   NSGAKLHQLLDASP
Sbjct: 358 EIILTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVEDENGYCDNKPNSGAKLHQLLDASP 417

Query: 414 RTDAVAAG 421
           R DAVAAG
Sbjct: 418 RADAVAAG 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541782|ref|XP_002511955.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis] gi|223549135|gb|EEF50624.1| Common plant regulatory factor CPRF-1, putative [Ricinus communis]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/425 (67%), Positives = 325/425 (76%), Gaps = 30/425 (7%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGNNE+GKS K +K SSP P DQ NIH+Y DWAAMQAYYGPR+A+PPYYNS +ASGHAP 
Sbjct: 3   MGNNEEGKSAKRDKSSSPAPPDQANIHVYPDWAAMQAYYGPRMALPPYYNSAMASGHAPH 62

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPT 120
           PYMWGP QPMMPPYG PYAA+YS GGVYAHPAVP+GS    HGVP SPAAVTPLN E PT
Sbjct: 63  PYMWGPPQPMMPPYGTPYAAVYSHGGVYAHPAVPIGSQPPGHGVPASPAAVTPLNVETPT 122

Query: 121 KSSGNADRGLAKKLKGLDGLAMSIGN--ASAESAEGGAEQRPSQSEADGSTDGSDGNTVR 178
           KS+GNADRGL KKLKG DGLAMSIGN  +  ESAEGG  +    SE +GST+GSDGNT  
Sbjct: 123 KSTGNADRGLIKKLKGFDGLAMSIGNGHSKVESAEGGERRLSQSSETEGSTNGSDGNTT- 181

Query: 179 AGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLS 238
           AG   KKRSREGTP  GG+ +T+ +   +P G                    K VG V+S
Sbjct: 182 AG---KKRSREGTPTIGGEIRTETRVNSLPTG------------------EAKSVGSVIS 220

Query: 239 PGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSR 298
           P M T LELRN+P   V A+ T+V QPC VLPPETWIQNERELKRERRKQSNRESARRSR
Sbjct: 221 PSMSTALELRNSP---VSAAKTNV-QPCPVLPPETWIQNERELKRERRKQSNRESARRSR 276

Query: 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI 358
           LRKQAE EELS KV+SL  EN +LKSEI+Q+SE SEKLR ENAALLEKLK+A+LG+ Q+I
Sbjct: 277 LRKQAETEELSHKVESLTSENLALKSEIHQMSEKSEKLRLENAALLEKLKNAELGHSQDI 336

Query: 359 VLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRTD 416
           +LN  ++ R + VSTENLLSRV+NS +V+R   E G ++E+ SNSGAKLHQLL  SPR D
Sbjct: 337 MLNNSDEPRGSAVSTENLLSRVDNSASVERKTAEDGDIYERTSNSGAKLHQLLSTSPRAD 396

Query: 417 AVAAG 421
           AVAAG
Sbjct: 397 AVAAG 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489695|ref|XP_002279966.2| PREDICTED: common plant regulatory factor 1-like [Vitis vinifera] gi|297745388|emb|CBI40468.3| unnamed protein product [Vitis vinifera]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 302/430 (70%), Positives = 343/430 (79%), Gaps = 9/430 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MGN E+GKS K EKP+SPPP DQ NIH+Y DWAAMQAYYGPRV +PPYYNS +ASGHAP 
Sbjct: 1   MGNEEEGKSPKPEKPTSPPPPDQANIHVYPDWAAMQAYYGPRVTLPPYYNSAMASGHAPH 60

Query: 61  PYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA-----AVTPLN 115
           PY+WGP QPMMPPYG PYAAIYS GGVY HPAVPLGSH+H HGV +SP      A  PL+
Sbjct: 61  PYIWGPPQPMMPPYGPPYAAIYSPGGVYPHPAVPLGSHSHGHGVQSSPVVSEALAAPPLS 120

Query: 116 TEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDG 174
            E P KSSGN DRGL KKLKG DGLAMSIGN + ES EGG++   SQS E +GS+DGSDG
Sbjct: 121 IETPAKSSGNTDRGLMKKLKGFDGLAMSIGNGNGESTEGGSDHGLSQSGETEGSSDGSDG 180

Query: 175 NTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVG-VNATPDKVLATAVAPTSVSGKPV 233
           NT  A Q+R+KRSREGTP  GGDGKT+ Q+T  P   VNA  DKVL  AV PTSV+GK  
Sbjct: 181 NTAGADQTRRKRSREGTPPIGGDGKTETQATSAPSAEVNAGSDKVLGVAVPPTSVTGKLA 240

Query: 234 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 293
           G VLSP M T LELRN P +N K SP+S+PQP A++P +TWI NERE+KRERRKQSNRES
Sbjct: 241 GAVLSPRMSTALELRNPPSVNAKTSPSSIPQPGAMVPSDTWILNEREIKRERRKQSNRES 300

Query: 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353
           ARRSRLRKQAE EEL+ KV+SL  EN+ LKSEIN+L ENSEKL+ ENA L+EKLKSAQL 
Sbjct: 301 ARRSRLRKQAETEELALKVESLNTENSVLKSEINRLRENSEKLKLENATLMEKLKSAQLE 360

Query: 354 NKQEIVLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDA 411
             ++  LN  +DKRV PVSTENLLSRVNNSG+VDR+ EE G ++EKN+N+GAKLHQLLD 
Sbjct: 361 QAEDTHLNKVDDKRVLPVSTENLLSRVNNSGSVDRSTEEEGDMYEKNTNTGAKLHQLLDT 420

Query: 412 SPRTDAVAAG 421
           SPR DAVAAG
Sbjct: 421 SPRADAVAAG 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|364521140|gb|AEW66884.1| bZIP protein [Medicago sativa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/428 (65%), Positives = 329/428 (76%), Gaps = 14/428 (3%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+++ KS K+EKPSSP   DQ N   +H+Y DWAAMQAYYGPRVA+PPYYNSP+ASGH
Sbjct: 1   MGNSDEEKSTKTEKPSSPVTVDQTNQTNVHVYPDWAAMQAYYGPRVAMPPYYNSPVASGH 60

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
            P PYMWGP Q MMPPYG PYAA+Y  GGVY HPAVP+G H H+  + +SPA  TPL+ E
Sbjct: 61  TPHPYMWGPPQHMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQEISSSPATGTPLSIE 120

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
            P KSSGN D+GL KKLKG DGLAMSIGN  AESAE GAE R SQS   +GS+DGSDGNT
Sbjct: 121 TPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEPGAESRQSQSVNTEGSSDGSDGNT 180

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+R+KRSRE TP   G+GKT  Q + V   ++ + DK++  AVAP  V+G+ VGP 
Sbjct: 181 SGANQTRRKRSRERTPTTDGEGKTHTQGSQVSKEISVS-DKMM--AVAPAGVTGQLVGPA 237

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S  M T LELRN+  ++ K +PTS PQP A LPPE WIQNERELKRERRKQSNRESARR
Sbjct: 238 VSSAMTTALELRNSSSVHSKINPTSAPQPSAALPPEAWIQNERELKRERRKQSNRESARR 297

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAEAEEL+RKV+SL  E+ASL+SEIN+L+E SE+LR EN AL EK+K AQLG  +
Sbjct: 298 SRLRKQAEAEELARKVESLNAESASLRSEINRLAEKSERLRMENVALKEKIKIAQLGQPK 357

Query: 357 EIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 413
           EI+L   + +R  PVSTENLLSRV NNSGTV+   +E G+   K  NSGAKLHQLLDASP
Sbjct: 358 EIILTNIDSQRTAPVSTENLLSRVNNNSGTVE---DENGYCDNK-PNSGAKLHQLLDASP 413

Query: 414 RTDAVAAG 421
           R DAVAAG
Sbjct: 414 RADAVAAG 421

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51870705|dbj|BAD42432.1| bZip transcription factor [Psophocarpus tetragonolobus]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/428 (64%), Positives = 320/428 (74%), Gaps = 11/428 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN---IHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           MGN+E+GKS K+  PSSP  +DQ N   IH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   MGNSEEGKSIKTGSPSSPATTDQTNQPSIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWG  Q MMPPYG PYAA YS GGVY HPAV +G H H  GVP+ PAA TP + E
Sbjct: 60  APHPYMWGSPQAMMPPYGPPYAAFYSHGGVYTHPAVAIGPHPHGQGVPSPPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN D+GL KKLKG DGLAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAERGAENRLSQSADTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A + R+KRSREGTP   G+GKT+ Q   V     A+  K++     P SV+G  VGP+
Sbjct: 180 AGANKMRRKRSREGTPTTDGEGKTETQEGSVSKET-ASSRKIM--PATPASVAGNLVGPI 236

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S GM T LELRN   ++ KA+ TS PQPCAV+P E W+QNERELKRERRKQSNRESARR
Sbjct: 237 VSSGMTTALELRNPSTVHSKANNTSAPQPCAVVPSEAWLQNERELKRERRKQSNRESARR 296

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAE EEL+RKV+ L  EN SLKSEI QL+E+SE++R EN+AL EKL++ QLG  +
Sbjct: 297 SRLRKQAETEELARKVEMLSTENVSLKSEITQLTESSEQMRMENSALREKLRNTQLGQTE 356

Query: 357 EIVLN--EDKR-VTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 413
           EI+L   + KR  TPVSTENLLSRVNNS + DR  E      E   NSGAKLHQLLDA+P
Sbjct: 357 EILLTSIDSKRGATPVSTENLLSRVNNSSSNDRTAENENDFCENKPNSGAKLHQLLDANP 416

Query: 414 RTDAVAAG 421
           R DAVAAG
Sbjct: 417 RADAVAAG 424

Source: Psophocarpus tetragonolobus

Species: Psophocarpus tetragonolobus

Genus: Psophocarpus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560615|ref|XP_003548586.1| PREDICTED: common plant regulatory factor 1 [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/428 (63%), Positives = 321/428 (75%), Gaps = 11/428 (2%)

Query: 1   MGNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASG 56
           MGN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASG
Sbjct: 1   MGNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASG 59

Query: 57  HAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNT 116
           HAP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + 
Sbjct: 60  HAPHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSV 119

Query: 117 EAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGN 175
           E+PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGN
Sbjct: 120 ESPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGN 179

Query: 176 TVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGP 235
           T  A Q+++KRSREGTPI   +GKT++Q+ P      ++   V AT   P SV+G  VGP
Sbjct: 180 TAGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSAT---PASVAGTLVGP 236

Query: 236 VLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESAR 295
           V+S GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESAR
Sbjct: 237 VVSSGMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESAR 296

Query: 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 355
           RSRLRKQAE EEL+RKV+ L  EN SLKSEI +L+E SE++R EN+AL EKL + QLG +
Sbjct: 297 RSRLRKQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMENSALREKLINTQLGPR 356

Query: 356 QEIVLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASP 413
           +EI L+  + KR  PVSTENLLSRVNNSG  DR  E    + E   NSGAKLHQLLD +P
Sbjct: 357 EEITLSSIDSKRAAPVSTENLLSRVNNSGANDRTAENENDICENKPNSGAKLHQLLDTNP 416

Query: 414 RTDAVAAG 421
           R +AVAAG
Sbjct: 417 RANAVAAG 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169959|gb|AAB00097.1| G-box binding factor, partial [Glycine max]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/427 (63%), Positives = 320/427 (74%), Gaps = 11/427 (2%)

Query: 2   GNNEDGKSFKSEKPSSPPPS----DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGH 57
           GN+E+ KS K+  PSS P +    +Q NIH+Y DWAAMQ YYGPRV IPPY+NS +ASGH
Sbjct: 1   GNSEEEKSVKTGSPSSSPATTEQTNQPNIHVYPDWAAMQ-YYGPRVNIPPYFNSAVASGH 59

Query: 58  APQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTE 117
           AP PYMWGP QPMM PYG PYAA YS GGVY HPAV +G H+H  GVP+SPAA TP + E
Sbjct: 60  APHPYMWGPPQPMMQPYGPPYAAFYSHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSVE 119

Query: 118 APTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSDGNT 176
           +PTK SGN ++GL KKLKG D LAMSIGN +AESAE GAE R SQS + +GS+DGSDGNT
Sbjct: 120 SPTKFSGNTNQGLVKKLKGFDELAMSIGNCNAESAERGAENRLSQSVDTEGSSDGSDGNT 179

Query: 177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV 236
             A Q+++KRSREGTPI   +GKT++Q+ P      ++   V AT   P SV+G  VGPV
Sbjct: 180 AGANQTKRKRSREGTPITDAEGKTELQNGPASKETASSKKIVSAT---PASVAGTLVGPV 236

Query: 237 LSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARR 296
           +S GM T LELRN   ++ KA+ TS  QPCAV+  ETW+QNERELKRERRKQSNRESARR
Sbjct: 237 VSSGMATALELRNPSTVHSKANSTSAAQPCAVVRNETWLQNERELKRERRKQSNRESARR 296

Query: 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356
           SRLRKQAE EEL+RKV+ L  EN SLKSEI +L+E SE++R EN+AL EKL + QLG ++
Sbjct: 297 SRLRKQAETEELARKVEMLTAENVSLKSEITRLTEGSEQMRMENSALREKLINTQLGPRE 356

Query: 357 EIVLN--EDKRVTPVSTENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPR 414
           EI L+  + KR  PVSTENLLSRVNNSG  DR  E    + E   NSGAKLHQLLD +PR
Sbjct: 357 EITLSSIDSKRAAPVSTENLLSRVNNSGANDRPAENENDICETKPNSGAKLHQLLDTNPR 416

Query: 415 TDAVAAG 421
            +AVAAG
Sbjct: 417 ANAVAAG 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512483|ref|XP_003626530.1| G-box binding factor [Medicago truncatula] gi|355501545|gb|AES82748.1| G-box binding factor [Medicago truncatula]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/391 (67%), Positives = 308/391 (78%), Gaps = 7/391 (1%)

Query: 35  MQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVP 94
           MQAYYGPRVA+PPYYNSP+ASGH P PYMWGP QPMMPPYG PYAA+Y  GGVY HPAVP
Sbjct: 1   MQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVP 60

Query: 95  LGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEG 154
           +G H H+ G+ +SPA  TPL+ E P KSSGN D+GL KKLKG DGLAMSIGN  AESAE 
Sbjct: 61  IGPHPHSQGISSSPATGTPLSIETPPKSSGNTDQGLMKKLKGFDGLAMSIGNGHAESAEP 120

Query: 155 GAEQRPSQS-EADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNA 213
           GAE R SQS   +GS+DGSDGNT  A Q+R+KRSREGTP   G+GKT+ Q + +   + A
Sbjct: 121 GAESRQSQSVNTEGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTNTQGSQISKEIAA 180

Query: 214 TPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPET 273
           + DK++  AVAP  V+G+ VGPV S  M T LELRN+  ++ K +PTS PQP AVLPPE 
Sbjct: 181 S-DKMM--AVAPAGVTGQLVGPVASSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEA 237

Query: 274 WIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333
           WIQNERELKRERRKQSNRESARRSRLRKQAEAEEL+RKV+SL  E+ASL+SEIN+L+ENS
Sbjct: 238 WIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENS 297

Query: 334 EKLRQENAALLEKLKSAQLGNKQEIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEE 390
           E+LR ENAAL EK K A+LG  +EI+L   + +R TPVSTENLLSRV NNSG+ DR +E+
Sbjct: 298 ERLRMENAALKEKFKIAKLGQPKEIILTNIDSQRTTPVSTENLLSRVNNNSGSNDRTVED 357

Query: 391 GGHLFEKNSNSGAKLHQLLDASPRTDAVAAG 421
                +   NSGAKLHQLLDASPR DAVAAG
Sbjct: 358 ENGYCDNKPNSGAKLHQLLDASPRADAVAAG 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573189|ref|XP_003554746.1| PREDICTED: common plant regulatory factor 1-like [Glycine max]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/431 (66%), Positives = 329/431 (76%), Gaps = 16/431 (3%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGN------IHMYTDWAAMQAYYGPRVAIPPYYNSPIA 54
           MGN+E+ KS K+EKPSSP   DQ N      IH+Y DWAAMQAYYGPRV +PPYYNS +A
Sbjct: 1   MGNSEEEKSTKTEKPSSPVTVDQANQTNQTNIHVYPDWAAMQAYYGPRVTMPPYYNSAVA 60

Query: 55  SGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPL 114
           SGHAP PYMWGP QPMMPPYG PYAAIY  GGVY HPAVP+G H H+ GVP+SPAA TPL
Sbjct: 61  SGHAPHPYMWGPPQPMMPPYGPPYAAIYPHGGVYTHPAVPIGPHTHSQGVPSSPAAGTPL 120

Query: 115 NTEAPTKSSGNADRGLAKKLKGLDGLAMSIGNASAESAEGGAEQRPSQS-EADGSTDGSD 173
           + E P KSSGN D+GL KKLK  DGLAMSIGN  AESAE G E R S+S + +GS+DGSD
Sbjct: 121 SIETPPKSSGNTDQGLMKKLKEFDGLAMSIGNGHAESAEPGGENRLSESVDTEGSSDGSD 180

Query: 174 GNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPV 233
           GNT  A Q+R+KRSREGTP   G+GKT++Q +P+     A+ +K+LA   A   V+G  V
Sbjct: 181 GNTSGANQTRRKRSREGTPTTDGEGKTEMQGSPISKETAAS-NKMLAVVTA--GVAGTIV 237

Query: 234 GPVLSPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRES 293
           GPV+S GM T LELRN   ++ KA   S PQPC VLP ETW+QNERELKRERRKQSNRES
Sbjct: 238 GPVVSSGMTTTLELRNPSSVHSKA---SAPQPCPVLPAETWLQNERELKRERRKQSNRES 294

Query: 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353
           ARRSRLRKQAE EEL+RKV+SL  ENA+LKSEIN+L+E+SEK+R ENA L  KLK+AQL 
Sbjct: 295 ARRSRLRKQAETEELARKVESLNAENATLKSEINRLTESSEKMRVENATLRGKLKNAQLR 354

Query: 354 NKQEIVLN--EDKRVTPVSTENLLSRV-NNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLD 410
             QEI LN  + +R TP+STENLLSRV NNSG+ DR +E+     E   NSGAKLHQLLD
Sbjct: 355 QTQEITLNIIDSQRATPISTENLLSRVNNNSGSNDRTVEDENGFCENKPNSGAKLHQLLD 414

Query: 411 ASPRTDAVAAG 421
            SPR DAVAAG
Sbjct: 415 TSPRADAVAAG 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2124938	360	GBF2 "G-box binding factor 2"	0.539	0.630	0.377	1.1e-64
TAIR|locus:2063020	382	GBF3 "G-box binding factor 3"	0.786	0.866	0.339	1.6e-38
TAIR|locus:2115250	315	GBF1 "G-box binding factor 1"	0.434	0.580	0.357	1.2e-31
TAIR|locus:2031705	389	bZIP68 "basic region/leucine z	0.719	0.778	0.322	3e-30
TAIR|locus:2062455	409	bZIP16 "basic region/leucine z	0.724	0.745	0.301	5e-28
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.237	0.537	0.396	1.6e-10
TAIR|locus:2012413	138	bZIP "AT1G68880" [Arabidopsis	0.192	0.586	0.494	7.3e-10
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.163	0.398	0.513	1.2e-09
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.168	0.430	0.445	1.2e-09
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.185	0.456	0.337	1.8e-09

TAIR|locus:2124938 GBF2 "G-box binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 88/233 (37%), Positives = 113/233 (48%)

Query:     1 MGNNEDGXXXXXXXXXXXXXX-DQGNIHMYT-DWAAMQAYYGPRVAIPPYYNSPIASGHA 58
             MG+NE+G               +Q N+H+Y  DWAAMQAYYGPRV IP YYNS +A GHA
Sbjct:     1 MGSNEEGNPTNNSDKPSQAAAPEQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGHA 60

Query:    59 PQPYMWXXXXXXXXXXXXXXXXIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEA 118
             P PYMW                    GGVYAHP V +GS        ++    TPL  +A
Sbjct:    61 PPPYMWASPSPMMAPYGAPYPPFCPPGGVYAHPGVQMGSQPQGPVSQSASGVTTPLTIDA 120

Query:   119 PTKSSGNXXXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXQ-RPSQS-EADGSTDGSDGNT 176
             P  S+GN                M               + R SQS E DGS++GSDGNT
Sbjct:   121 PANSAGNSDHGFMKKLKEFDGLAMSISNNKVGSAEHSSSEHRSSQSSENDGSSNGSDGNT 180

Query:   177 VRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPDKVLATAVAPTSVS 229
                 QSR+KR ++ +P + G+  +   S P+  G N  PD  + T V PT++S
Sbjct:   181 TGGEQSRRKRRQQRSP-STGERPSSQNSLPLR-GENEKPDVTMGTPVMPTAMS 231

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

TAIR|locus:2063020 GBF3 "G-box binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 121/356 (33%), Positives = 170/356 (47%)

Query:    22 DQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIA-SGHAPQPYMWXXXXXXXXXXXXXXXX 80
             DQ N+H+Y DWAAMQAYYGPRVA+PPYYNS +A SGH P PYMW                
Sbjct:    23 DQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAV 82

Query:    81 IYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSGNXXXXXXXXXXXXXXX 140
                 GGVYAHP +P+GS       P      T L+ + PTKS+GN               
Sbjct:    83 YPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDTPTKSTGNTDNGLMKKLKEFDGL 142

Query:   141 XMXXXXXXXXXXXXXXXQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKT 200
              M               +  + SE DGSTDGSDGNT  A + + KRSREGTP    DGK 
Sbjct:   143 AMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTGADEPKLKRSREGTPTK--DGKQ 200

Query:   201 DIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPGMNVKASPT 260
              +Q++       ++ D    T V    + G   G +LSPG+        +  + +   P 
Sbjct:   201 LVQASSFHSVSPSSGD----TGVK--LIQGS--GAILSPGVSANSNPFMSQSLAM-VPPE 251

Query:   261 SVPQPCAVLPPETWIQNERE-LKRER-RKQSNRES-ARR------SRLRKQAEAEELSRK 311
             +  Q    L  E   Q+ RE  +R R RKQ+  E  AR+        +  ++E  +L+ K
Sbjct:   252 TWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEK 311

Query:   312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVT 367
              D L   NA+L  ++ + SE  +++    A +L ++K++  G+K +   + D   T
Sbjct:   312 SDKLRGANATLLDKL-KCSEPEKRVP---ANMLSRVKNSGAGDKNKNQGDNDSNST 363

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
 Identities = 74/207 (35%), Positives = 111/207 (53%)

Query:   159 RPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGGDGKTDIQSTPVPVGVNATPD-- 216
             + S+  +    +G D     +G      S E    AG   + D  +     G    P   
Sbjct:   114 KKSKGNSKKKAEGGDKALSGSGNDGASHSDESVT-AGSSDENDENANQQEQGSIRKPSFG 172

Query:   217 KVLATAVAPTSVSGKPVGPV-LSPGMP-TKLELRNAPGMNVKASPTSVPQPCAVLPPETW 274
             ++LA A +  S +G+  G V + P  P T L +    GM++ +S   VP           
Sbjct:   173 QMLADA-SSQSTTGEIQGSVPMKPVAPGTNLNI----GMDLWSSQAGVP----------- 216

Query:   275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334
             +++ERELKR++RKQSNRESARRSRLRKQAE E+L ++V+SL +EN SL+ E+ +LS   +
Sbjct:   217 VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECD 276

Query:   335 KLRQENAALLEKLKSAQLGNKQEIVLN 361
             KL+ EN ++ ++L+   LG   E V N
Sbjct:   277 KLKSENNSIQDELQRV-LG--AEAVAN 300

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IEP

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 108/335 (32%), Positives = 155/335 (46%)

Query:    31 DWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWXXXXXXXXXXX--XXXXXIYSTGGVY 88
             DW+  QAY  P   +PP+    +AS   P PYMW                  +Y  GG+Y
Sbjct:    48 DWSGFQAY-SP---MPPH--GYVASSPQPHPYMWGVQHMMPPYGTPPHPYVTMYPPGGMY 101

Query:    89 AHPAVPLGSHAHNHGVPTSPAAVTPL--NT----EAPTK-SSGNXXXXXXXXXXXXXXXX 141
             AHP++P GS+ ++     SP  +     NT    E   K S G                 
Sbjct:   102 AHPSLPPGSYPYSPYAMPSPNGMAEASGNTGSVIEGDGKPSDGKEKLPIKRSKGSLGSLN 161

Query:   142 MXX-----XXXXXXXXXXXXXQRPSQSEADGSTDGSDGNTVRAGQSRKKRSREGTPIAGG 196
             M                     + ++S +DGS+DGSD N+     SR    ++G   +  
Sbjct:   162 MIIGKNNEAGKNSGASANGACSKSAESGSDGSSDGSDANSQNDSGSRHN-GKDGETASES 220

Query:   197 DGKTDIQSTPVPVGVNATPDKVLATAVAPTSVSGKPVGPV-LSPGMPTKLELRNAPGMNV 255
              G       P   G N   ++ +A  + P S +G P  P  L+ GM    +  +  G NV
Sbjct:   221 GGSAH---GPPRNGSNLPVNQTVA--IMPVSATGVPGPPTNLNIGM----DYWSGHG-NV 270

Query:   256 KASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 315
               +   V    +   P   + +ERE+KR+RRKQSNRESARRSRLRKQAE +EL+++ + L
Sbjct:   271 SGAVPGVVVDGSQSQPWLQVSDEREIKRQRRKQSNRESARRSRLRKQAECDELAQRAEVL 330

Query:   316 IDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350
               EN+SL++EIN+L    E+L  EN++L  K  SA
Sbjct:   331 NGENSSLRAEINKLKSQYEELLAENSSLKNKFSSA 365

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 103/342 (30%), Positives = 151/342 (44%)

Query:    31 DWAAMQAYYGPRVAIPPY-YNSPIASGHAPQPYMWXXXXXXXXXXXXXXXXIYSTGGVYA 89
             DW+  QAY  P    PP+ Y +     H P  +                  +Y  GG+YA
Sbjct:    43 DWSGFQAY-SPMP--PPHGYVASSPQPH-PYMWGVQHMMPPYGTPPHPYVAMYPPGGMYA 98

Query:    90 HPAVPLGSHAHNHGVPTSPAAVTPL--NTEAPTKSSGNXXXXXXXXXXXXXXXXMXXXXX 147
             HP++P GS+ ++     SP  +T +  NT   T                     +     
Sbjct:    99 HPSMPPGSYPYSPYAMPSPNGMTEVSGNTTGGTDGDAKQSEVKEKLPIKRSRGSLGSLNM 158

Query:   148 XXX----------XXXXXXXQRPSQSEADGSTDGSDGNTVR-AGQSRKKRSREGTPIAGG 196
                                  +  +S +DGS++GSDGN+   +G     +  E     GG
Sbjct:   159 ITGKNNEPGKNSGASANGAYSKSGESASDGSSEGSDGNSQNDSGSGLDGKDAEAASENGG 218

Query:   197 DG---KTDIQSTPV-PVGVNATPDKVLATAVAPTSVSGKPVGPVLSPGMPTKLELRNAPG 252
                  +     TP+ PV     P   +  A  P   +   +G     G PT   +   PG
Sbjct:   219 SANGPQNGSAGTPILPVS-QTVPIMPMTAAGVPGPPTNLNIGMDYW-GAPTSAGI---PG 273

Query:   253 MNVKASPTSVPQPCAVLP-------PETWIQNERELKRERRKQSNRESARRSRLRKQAEA 305
             M+ K S    P P  V P        + W+Q++RELKR+RRKQSNRESARRSRLRKQAE 
Sbjct:   274 MHGKVS---TPVPGVVAPGSRDGGHSQPWLQDDRELKRQRRKQSNRESARRSRLRKQAEC 330

Query:   306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347
             +EL+++ + L +EN +L++EIN+L    E+L  EN +L ++L
Sbjct:   331 DELAQRAEVLNEENTNLRAEINKLKSQCEELTTENTSLKDQL 372

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0006473 "protein acetylation" evidence=RCA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 42/106 (39%), Positives = 65/106 (61%)

Query:   272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
             E ++ NER   ++RR  SNRESARRSR+RKQ   +EL  +V  L  EN  L  ++NQ+S+
Sbjct:    67 EIFVINER---KQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSD 123

Query:   332 NSEKLRQENAALLEK-LKSAQLGNKQEIVLN--EDKRVTPVSTENL 374
             N++ + QEN++L E+ L+  Q+    + +     DK  +P S + L
Sbjct:   124 NNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDEL 169

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2012413 bZIP "AT1G68880" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 42/85 (49%), Positives = 54/85 (63%)

Query:   278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
             + E KR RRK SNRESARRSR+RKQ   EEL   +  LI++N SL  E++Q  E  EK+ 
Sbjct:    44 DNERKR-RRKVSNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKVI 102

Query:   338 QENAALLEK-LKSAQLGNKQEIVLN 361
             +EN  L E+  KS ++    EI LN
Sbjct:   103 EENMKLREENSKSRKMIG--EIGLN 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query:   275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334
             I NER   ++RR  SNRESARRSR+RKQ   +EL  +V  L  EN  L  ++N LSE+ +
Sbjct:    77 IINER---KQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHD 133

Query:   335 KLRQENAALLEK 346
             K+ QENA L E+
Sbjct:   134 KVLQENAQLKEE 145

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 33/74 (44%), Positives = 51/74 (68%)

Query:   276 QNEREL---KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332
             +N +E+   ++++RK SNRESARRSR+RKQ + +EL  +V  L DEN  L  ++N + E+
Sbjct:    63 ENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVLES 122

Query:   333 SEKLRQENAALLEK 346
              EK+ +EN  L E+
Sbjct:   123 QEKVIEENVQLKEE 136

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 27/80 (33%), Positives = 51/80 (63%)

Query:   282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341
             ++ +R  SNRESARRSR+RKQ   ++L+ +++ L ++N  + + +   S+   K++ EN+
Sbjct:    31 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQAENS 90

Query:   342 ALLEKLK--SAQLGNKQEIV 359
              L  +++  S +L +  EIV
Sbjct:    91 VLTAQMEELSTRLQSLNEIV 110

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42776	GBF3_ARATH	No assigned EC number	0.5351	0.8741	0.9633	yes	no
Q99089	CPRF1_PETCR	No assigned EC number	0.5316	0.9619	0.9854	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.2523.1 hypothetical protein (411 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	3e-59
smart00338	65	smart00338, BRLZ, basic region leucin zipper	5e-24
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-23
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	3e-11
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-09
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	2e-06
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	7e-05
pfam03962	188	pfam03962, Mnd1, Mnd1 family	1e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-04
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	1e-04
pfam06005	72	pfam06005, DUF904, Protein of unknown function (DU	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	7e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
pfam11559	149	pfam11559, ADIP, Afadin- and alpha -actinin-Bindin	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	0.003
pfam08614	194	pfam08614, ATG16, Autophagy protein 16 (ATG16)	0.003

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score =  191 bits (486), Expect = 3e-59
 Identities = 95/187 (50%), Positives = 114/187 (60%), Gaps = 13/187 (6%)

Query: 1   MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQ 60
           MG++E+GK  KS  P +    D     +Y DW+AMQAYYGPR   PPY+NS +AS   P 
Sbjct: 1   MGSSEEGKPSKS-SPKTSVQEDTPTPTVYPDWSAMQAYYGPRPP-PPYFNSSVASSPQPH 58

Query: 61  PYMWGPAQPMMPPYGAP--YAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAA--VTPLNT 116
           PYMWGP QPMMPPYG P  YAA+Y  GGVYAHP++P GSH  +     S      TPL+ 
Sbjct: 59  PYMWGPQQPMMPPYGTPPPYAAMYPPGGVYAHPSMPPGSHPFSPYAMPSAEVPGSTPLSM 118

Query: 117 EAPTKSSGNADRGLAKKLKGLD---GLAMSIGNASAESAEGG-AEQRPSQSE---ADGST 169
           E   KSS N D+G  KK KG D   GLAMS  N  +  A G  A    SQS    +DGS+
Sbjct: 119 ETDAKSSDNKDKGSIKKSKGSDGSLGLAMSGKNGESGKASGSSANGGSSQSSESGSDGSS 178

Query: 170 DGSDGNT 176
           +GSDGN+
Sbjct: 179 EGSDGNS 185

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 93.8 bits (234), Expect = 5e-24
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
           E + KR RR++ NRE+ARRSR RK+AE EEL RKV+ L  EN  LK EI +L    EKL+
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Query: 338 QENAA 342
            E   
Sbjct: 61  SELEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
           E+ELKRERR+Q NRE+ARRSRLRK+A  EEL  KV  L  EN +L+SE+ +L +   KL+
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 338 QEN 340
            EN
Sbjct: 61  SEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
             R R++  NRE+ARRSR RK    ++L  KV+ L  EN+ L+ E+++L +
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKK 51

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 329
           +  R+RR++ N E+ARRSR +K+   EEL  +V  L +ENA L+ ++ QL
Sbjct: 3   DEYRDRRRR-NNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQL 51

Length = 54

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 35/127 (27%)

Query: 275 IQNEREL----------KRERRKQSNRESARRSRLR-KQAEAEELSRKVDSLIDENA--- 320
           ++  RE+          + E  ++      R   L  K+ E +E   K D  + EN    
Sbjct: 3   LEKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR 62

Query: 321 ---------------SLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 365
                            + EI +L    E+L+ E   L EKL+  Q     E  L     
Sbjct: 63  RRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQ---PYEEFLE---S 116

Query: 366 VTPVSTE 372
           V   S E
Sbjct: 117 VVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 16/66 (24%), Positives = 24/66 (36%)

Query: 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 355
           + R R     E L   +  L  E   L++ I +L    E L +E A L  K +  +   K
Sbjct: 43  QQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLK 102

Query: 356 QEIVLN 361
                 
Sbjct: 103 TLEQKL 108

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 277 NERELKRER-RKQSNRESARRSRLRKQAEAEELSRKV----DSLIDENASLKSEINQLSE 331
           N+ + + E+ +K+      R + L+ Q E  +  R+       L++E   L+ E+ +L  
Sbjct: 65  NKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKA 124

Query: 332 NSEKLRQENAALLEKLK 348
             EK  + +   +EKLK
Sbjct: 125 ELEKYEKNDPERIEKLK 141

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 272 ETWIQNERELKRERRKQSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLS 330
           E W+ + R L       S+  SAR  RL + Q E  EL  ++  L ++ A L+ E  +L 
Sbjct: 50  EGWVLS-RYL-------SDTPSAR-ERLPELQQELAELQEELAELQEQLAELQQENQELK 100

Query: 331 ENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKR 365
           +    L  E   L ++L   +  +   I L+E+ R
Sbjct: 101 QELSTLEAELERLQKELARIKQLSANAIELDEENR 135

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 267 AVLPPETWIQNERELKR-----ERRKQSNRESARRSRLRKQA-----EAEELSRKVDSLI 316
           +VL PE   +  +++K      E  K++  E+ +   L+ +      +A E+  K+  L 
Sbjct: 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185

Query: 317 DENASLKSEINQLSENSEKLRQE 339
           +E      E+ +L E +++LR+E
Sbjct: 186 NEAQEYHEEMIKLFEEADELRKE 208

Length = 294

>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904)

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351
           EEL  K+   ++  A L+ EI +L E +E+L +EN  L E+ K  +
Sbjct: 7   EELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLK 52

This family consists of several bacterial and archaeal hypothetical proteins of unknown function. Length = 72

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%)

Query: 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENAS-------LKSEINQLSEN 332
           EL+    +    ES        + + E L  KV  L  + AS       L++ + +L + 
Sbjct: 359 ELEELEAELEELESRLEE---LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

Query: 333 SEKLRQENAALLEKLKSAQL 352
            E+L+QE   LL+KL+ A+L
Sbjct: 416 RERLQQEIEELLKKLEEAEL 435

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---EN 332
           + E EL+  R      E         +   E+L  K++ L  E   L  E N+L+   E 
Sbjct: 302 ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEE 361

Query: 333 SEKLRQENAALLEKLKSAQLGNKQEI 358
             K  +E    LEK     L   +++
Sbjct: 362 RLKELEERLEELEKELEKALERLKQL 387

Length = 908

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 279 RELKRERRKQSNRESARRSRLRKQ-----AEAEELSRKVDSLIDENASLKSEINQLSENS 333
           +E + E RK+++  + +R  L  +      +A+EL  + D + +E   LK + ++++   
Sbjct: 26  KEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85

Query: 334 EKLRQENAALLEKLKSAQLG 353
           ++LR+E   L EK     LG
Sbjct: 86  QELRKEYRELKEKRNEFNLG 105

Length = 294

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 9e-04
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 282 KRERRKQSNRESAR-RSRLRKQAEAEELSRKVDSLIDENASLKSEINQL--SENSEKLRQ 338
           K ERR +   E+A  R + +K+   ++L  + ++L +    L+    Q    +   K   
Sbjct: 152 KPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211

Query: 339 ENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVN 379
           E   L EKL+  +        L  ++    +  E L     
Sbjct: 212 EYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQE 252

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 276 QNERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334
           +   +L+    +     E         Q   EEL  +++SL +  A LK EI +L E  +
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 335 KLRQENAALLEKLKSAQL 352
            L++E   L E+L+ A+ 
Sbjct: 790 ALQEELEELEEELEEAER 807

Length = 1163

>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340
           L++  R    RES   +  + +AE E L   ++ L  +   L+ E+  L     +L ++ 
Sbjct: 42  LQQRDRDLEFRESLEETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKL 101

Query: 341 AALLEKLKS 349
             L +KLK+
Sbjct: 102 KTLEQKLKN 110

This family is found in mammals where it is localised at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. Length = 149

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334
           I+   EL+RE  +              +A  EEL    + L+++  SL+  + +L E  E
Sbjct: 290 IERLEELEREIEELEEEL------EGLRALLEEL----EELLEKLKSLEERLEKLEEKLE 339

Query: 335 KLRQENAALLEKLKSAQLGNKQEIVLNE 362
           KL  E   L E+    +L    E  L E
Sbjct: 340 KLESELEELAEEKN--ELAKLLEERLKE 365

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 279 RELKRERRKQSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
            E ++ R K +   +  +  L   +AE EE+ ++     DE    + ++ +L     +L+
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 338 QENAALLEKLK--SAQLGN-KQEIVLNEDK 364
           +E   L E+L+  S +L +    I   E K
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAK 435

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 277 NERELKRERRKQSNRESARRSRLR-KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
              ELKRE           +SRL   + E EEL  +++ L +    L+ E+  L E   K
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 336 LRQENAALLEKLKSAQ 351
           L++E   L EK ++ Q
Sbjct: 777 LKEEIEELEEKRQALQ 792

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
             EREL+   +++   E        +  E EE   K+D L +E   L+ E+ +L E  E+
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEE---KLDELEEELEELEKELEELKEELEE 867

Query: 336 LRQENAALLEKLKSAQLGNKQEIVLNE 362
           L  E   L ++LK  +   +++  L E
Sbjct: 868 LEAEKEELEDELKELE---EEKEELEE 891

Length = 1163

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL- 336
           E+E K ER++    ES    RL ++A +  L RK ++L  +  +L+S+   L++ S+ + 
Sbjct: 89  EQEFKSERQELKQIES----RLTERATS--LDRKDENLSSKEKTLESKEQSLTDKSKHID 142

Query: 337 -RQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSR 377
            R+E    LE+ K A+L     +   E + +    TEN L+ 
Sbjct: 143 EREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTH 184

Length = 535

>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16)

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334
            Q E+ +      +S   S        + E +E  +  ++L DE  SL  E+N L E   
Sbjct: 112 QQLEKTIAE---LRSEITSLETEIRDLREELQEKEKDNETLQDELISLNIELNALEEKLR 168

Query: 335 KLRQENAALLEK 346
           KL++EN  L+E+
Sbjct: 169 KLQKENQELVER 180

Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
PF07777	189	MFMR: G-box binding protein MFMR; InterPro: IPR012	100.0
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.47
smart00338	65	BRLZ basic region leucin zipper.	99.41
KOG3584	348	consensus cAMP response element binding protein an	99.28
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.21
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.21
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.16
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.1
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.42
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.41
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.98
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.71
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.67
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	97.21
PRK10884	206	SH3 domain-containing protein; Provisional	96.68
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.44
PRK13169	110	DNA replication intiation control protein YabA; Re	96.02
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.77
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.74
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	95.5
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	95.18
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.09
PRK10884	206	SH3 domain-containing protein; Provisional	94.98
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.86
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	94.58
COG4467	114	Regulator of replication initiation timing [Replic	94.45
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.31
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.31
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.21
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.21
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	94.13
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.04
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	93.91
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.88
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.75
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.64
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	93.54
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	93.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.12
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	93.11
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	92.78
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.53
KOG1962	216	consensus B-cell receptor-associated protein and r	92.41
PRK11637	428	AmiB activator; Provisional	92.36
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	92.36
PRK00295	68	hypothetical protein; Provisional	92.35
PRK04325	74	hypothetical protein; Provisional	92.3
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	92.24
PRK00736	68	hypothetical protein; Provisional	92.18
PRK02119	73	hypothetical protein; Provisional	92.17
PRK02793	72	phi X174 lysis protein; Provisional	92.11
PRK11637	428	AmiB activator; Provisional	91.88
PRK13922	276	rod shape-determining protein MreC; Provisional	91.78
KOG3335	181	consensus Predicted coiled-coil protein [General f	91.76
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.75
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.68
PRK04406	75	hypothetical protein; Provisional	91.6
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.36
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.12
PRK00888	105	ftsB cell division protein FtsB; Reviewed	91.09
smart00338	65	BRLZ basic region leucin zipper.	90.99
PRK00846	77	hypothetical protein; Provisional	90.77
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.69
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	90.51
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.43
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.38
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	90.13
PRK13169	110	DNA replication intiation control protein YabA; Re	90.13
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	89.59
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	89.43
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	89.32
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	89.29
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.24
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	88.81
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	88.71
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.62
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.6
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	88.57
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.51
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.44
PRK00888	105	ftsB cell division protein FtsB; Reviewed	88.43
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.39
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.17
PRK09039	343	hypothetical protein; Validated	88.1
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	88.09
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	87.89
COG2433	652	Uncharacterized conserved protein [Function unknow	87.76
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.68
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.64
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	87.61
KOG1962	216	consensus B-cell receptor-associated protein and r	87.58
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.53
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.42
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	87.39
KOG3650	120	consensus Predicted coiled-coil protein [General f	87.39
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.36
PRK02119	73	hypothetical protein; Provisional	87.29
PHA02562	562	46 endonuclease subunit; Provisional	87.26
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	87.23
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.18
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	87.04
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.02
KOG2236	483	consensus Uncharacterized conserved protein [Funct	86.93
PF15294	278	Leu_zip: Leucine zipper	86.77
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	86.76
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.68
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	86.66
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.59
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.55
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	86.47
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	86.42
PRK04406	75	hypothetical protein; Provisional	86.35
COG4942	420	Membrane-bound metallopeptidase [Cell division and	86.23
PRK10803	263	tol-pal system protein YbgF; Provisional	86.19
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	86.13
KOG4571	294	consensus Activating transcription factor 4 [Trans	85.86
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	85.85
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.84
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	85.82
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	85.82
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	85.69
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	85.61
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	85.53
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.08
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	84.7
KOG4797	123	consensus Transcriptional regulator [Transcription	84.65
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	84.54
PF15058	200	Speriolin_N: Speriolin N terminus	84.51
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	84.5
PRK02793	72	phi X174 lysis protein; Provisional	84.35
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	84.33
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.25
COG4467	114	Regulator of replication initiation timing [Replic	83.99
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.83
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.76
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	83.75
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	83.74
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	83.7
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.53
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	83.47
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	83.38
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	83.34
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	82.93
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	82.92
PF14662	193	CCDC155: Coiled-coil region of CCDC155	82.84
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.83
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.83
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	82.71
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	82.48
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.36
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.26
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	82.08
PF04871	136	Uso1_p115_C: Uso1 / p115 like vesicle tethering pr	82.04
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	82.03
PRK00295	68	hypothetical protein; Provisional	81.87
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	81.87
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.74
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	81.72
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	81.72
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	81.68
KOG3119	269	consensus Basic region leucine zipper transcriptio	81.53
PHA02562	562	46 endonuclease subunit; Provisional	81.27
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	81.27
PRK03918	880	chromosome segregation protein; Provisional	81.18
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	81.01
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	81.01
COG2433	652	Uncharacterized conserved protein [Function unknow	80.96
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	80.9
PRK14127	109	cell division protein GpsB; Provisional	80.84
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	80.73
PF07558	46	Shugoshin_N: Shugoshin N-terminal coiled-coil regi	80.45
PRK04325	74	hypothetical protein; Provisional	80.37
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	80.32
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	80.3
PF10669	121	Phage_Gp23: Protein gp23 (Bacteriophage A118); Int	80.24
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	80.17
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	80.13
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	80.03
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.01

>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain

Probab=100.00  E-value=5.5e-72  Score=518.00  Aligned_cols=179  Identities=60%  Similarity=1.043  Sum_probs=168.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC--c
Q 014660            1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y   78 (421)
Q Consensus         1 MG~~e~~~~~K~~K~ss~~~~~q~~~~~yPDWs~mQAYygp~~~~pp~f~s~vas~p~phPYMWG~~qpmmpPYGtP--Y   78 (421)
                      ||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||+++||++|+|||||||+|||||||||||  |
T Consensus         1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY   79 (189)
T PF07777_consen    1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY   79 (189)
T ss_pred             CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence            999999999999999887655899999999999999999999 8889999999999999999999999999999997  9


Q ss_pred             ccccCCCcccCCCCCCCCCCCCCCCCCCCCC--CCCCCCcCC-CCCCCCCcccchhhhccccC-CcccccCCCCCCCCCC
Q 014660           79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG  154 (421)
Q Consensus        79 ~a~Yp~GgvYaHP~~p~g~~p~~~~~~~sp~--~~tp~s~e~-~~Kss~~kd~~~~Kk~Kg~~-Gl~m~~g~~~~~~~~~  154 (421)
                      +||||||||||||+||+|+|||++++++++.  ++||+++|+ ++|++++|||+++||||||| ||+|++||++.+++++
T Consensus        80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~  159 (189)
T PF07777_consen   80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG  159 (189)
T ss_pred             ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence            9999999999999999999999999999854  478999999 69999999999999999999 6999999999999988


Q ss_pred             C-CCCCCCCc---CCCCCCCCCCCCCcccc
Q 014660          155 G-AEQRPSQS---EADGSTDGSDGNTVRAG  180 (421)
Q Consensus       155 ~-~~~~~SqS---~segsSdgsd~ns~~~~  180 (421)
                      + +|++.|||   .+||||||||+|+++++
T Consensus       160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~  189 (189)
T PF07777_consen  160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS  189 (189)
T ss_pred             CCCCCccCccccccccccccCcCccccCCC
Confidence            5 68899996   47999999999999864

It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.47  E-value=2.9e-13  Score=105.45  Aligned_cols=64  Identities=52%  Similarity=0.702  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  341 (421)
Q Consensus       278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~  341 (421)
                      |++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4667899999999999999999999999999999999999999999999999999999988873

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=99.41  E-value=1.2e-12  Score=102.15  Aligned_cols=61  Identities=56%  Similarity=0.732  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN  340 (421)
Q Consensus       280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN  340 (421)
                      +.|+.||+++||+||++||.||++|+++|+.+|..|+.+|..|+.++..|+.++..|..++
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4588999999999999999999999999999999999999999999999998666666554

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.28  E-value=4.7e-12  Score=125.05  Aligned_cols=64  Identities=33%  Similarity=0.326  Sum_probs=59.1

Q ss_pred             chhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  335 (421)
Q Consensus       272 e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~  335 (421)
                      ..-..||.-+||+-|+++|||+||+||+|||+|+.+||.||..|+.+|..|-+||..|++.|..
T Consensus       281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~  344 (348)
T KOG3584|consen  281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH  344 (348)
T ss_pred             CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            3446799999999999999999999999999999999999999999999999999999987653

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.21  E-value=2.1e-11  Score=128.00  Aligned_cols=71  Identities=34%  Similarity=0.388  Sum_probs=67.7

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  345 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke  345 (421)
                      ..|.+.+||+.|||+|||||..||+|||+|++.||.++..|.+||+.|+.|...|++++..|+.||..||-
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            35889999999999999999999999999999999999999999999999999999999999999998874

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.21  E-value=1.8e-11  Score=126.97  Aligned_cols=74  Identities=30%  Similarity=0.392  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      -+|+.+||.||||+|++||+.||+|||+|++.||.||....+||++|++++.+|..++..|..+.+.|...+.+
T Consensus       245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q  318 (472)
T KOG0709|consen  245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ  318 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999999888888888888777765

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.16  E-value=1.7e-10  Score=111.67  Aligned_cols=71  Identities=35%  Similarity=0.420  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |+|-+|||++||++|+.+|.|||+++++|+.++.+|+.||..|+.|...|++..+.|..+|..|..+|..+
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~  137 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL  137 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999998888743

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.10  E-value=5.6e-10  Score=84.81  Aligned_cols=50  Identities=54%  Similarity=0.738  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      .++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..++..|+.
T Consensus         4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3566777 9999999999999999999999999999999999999998875

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.42  E-value=9.6e-07  Score=86.83  Aligned_cols=68  Identities=34%  Similarity=0.470  Sum_probs=58.0

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ++++..+|-+|.+++|||+|.+||.||-+++.+||.+|..|..+|..|-.++..|++       ...+|++++..
T Consensus       199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~-------~v~e~k~~V~~  266 (279)
T KOG0837|consen  199 MEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE-------QVAELKQKVME  266 (279)
T ss_pred             chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHH
Confidence            456777788888999999999999999999999999999999999999999998887       44455555543

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.41  E-value=4.1e-09  Score=88.01  Aligned_cols=68  Identities=31%  Similarity=0.489  Sum_probs=56.9

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  343 (421)
Q Consensus       276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L  343 (421)
                      .+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..+..++..+...+..|
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L   91 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL   91 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46677899999999999999999999999999999999998888888888888777665555544444

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.98  E-value=2.5e-05  Score=77.02  Aligned_cols=57  Identities=30%  Similarity=0.520  Sum_probs=48.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .|+.+|-++|||||.++|...+++..||..|++||..|+.++.+|+.       |+..|+.-+.
T Consensus       197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~-------el~~~~~~~~  253 (269)
T KOG3119|consen  197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK-------ELATLRRLFL  253 (269)
T ss_pred             HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            35556999999999999999999999999999999999999999987       5555555444

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.71  E-value=0.00022  Score=71.44  Aligned_cols=52  Identities=33%  Similarity=0.486  Sum_probs=44.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      |.++.|..+|-|=|.||+++.|.|+.+++.|+.+|.+|+.++..|..+++.|
T Consensus       230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl  281 (294)
T KOG4571|consen  230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL  281 (294)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667789999999999999999999999999999999998888744443

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.67  E-value=0.00042  Score=62.44  Aligned_cols=69  Identities=28%  Similarity=0.440  Sum_probs=50.6

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ++-..+|..||-++||=.|+-||-|+-..-++||.+..       .|+.+|..|++++.++..|...|+.+...++
T Consensus        47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~-------~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKA-------ELQQQVEKLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999999887776665555       5555555555555556667777777777665

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=97.21  E-value=0.00063  Score=73.83  Aligned_cols=66  Identities=24%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      |-.||+=+||.||++||+||-.-|..||..|+.|+.|-.+|.+|-..+...+..+..+...|-.++
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~V  555 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV  555 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999998888888777776666666666665554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.68  E-value=0.023  Score=54.60  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          278 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       278 ErE~KR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      |+++...+-++.| +..........++.+++++..+..|+++|+.|++++..++.+.+.|+.+|..|+..+..
T Consensus        99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~  171 (206)
T PRK10884         99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM  171 (206)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444 22223333344555667777777788888888888888888888888888888877654

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.44  E-value=0.014  Score=50.81  Aligned_cols=50  Identities=28%  Similarity=0.487  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      ..+.+|++++..|-.+...|+..+..|.+++..|+.||..||++|..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999987754

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.02  E-value=0.032  Score=49.09  Aligned_cols=49  Identities=29%  Similarity=0.468  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ..+..|++++..|-.+...|+..+..|.+++..|+.||.-||++|..++
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4578899999999999999999999999999999999999999999763

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.77  E-value=0.066  Score=43.76  Aligned_cols=47  Identities=28%  Similarity=0.384  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++.||.+|..+-..+..|+.++..|++++..|..+|..|+.+...+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45666666666555555555555555555555555555555444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.74  E-value=0.045  Score=51.12  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELS---RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE---~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+++-++.++.|++++|....-+=.-=-..|..|.   .....|..||..|+.++..|++++..|+.||..|..++..++
T Consensus        59 Y~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~  138 (161)
T TIGR02894        59 YEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE  138 (161)
T ss_pred             HHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666676665422211111122333333   246677778888888888888888888888888888877655

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=95.50  E-value=0.084  Score=44.15  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      -++|..++..|+.....|..++..++++|.+|+.||..|..=|.++
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999999999999999999999999999887

The exact function is unknown.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=95.18  E-value=0.091  Score=56.23  Aligned_cols=48  Identities=29%  Similarity=0.374  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      |+.+++||++++.|++|.+.|.++...+++++++|+.||..|+++++.
T Consensus        75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a  122 (475)
T PRK13729         75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA  122 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            447899999999999999999999999999999999999999999954

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.09  E-value=0.082  Score=43.66  Aligned_cols=49  Identities=27%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .-+.-|+-+++.|+.+|..|..+...++...+.|+.||.+|+++-..-|
T Consensus        18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ   66 (79)
T COG3074          18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ   66 (79)
T ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678899999999999999999999999999999999998876543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.98  E-value=0.36  Score=46.46  Aligned_cols=60  Identities=17%  Similarity=0.023  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014660          296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK  355 (421)
Q Consensus       296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~  355 (421)
                      .-+..-+++..+|+++++.++.+...|..++++|++++..+..|+..|+.++..++....
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        111 NIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444577778888888888888888888888888888888888888888877764443

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.86  E-value=0.13  Score=41.50  Aligned_cols=46  Identities=35%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +..|+.+|+.|=.....|+.+...|+++...+..|+..|.++...+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A   47 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA   47 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=94.58  E-value=0.67  Score=39.20  Aligned_cols=74  Identities=24%  Similarity=0.355  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      -|.-++|..+++.+=|++-..|.-+.....+|+.++..|......|-.+|.....+|.+|+.-|..+..+|..+
T Consensus         6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen    6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999899888888888888999999999999999999999999999999999999999999754

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.45  E-value=0.13  Score=45.45  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ..+.+|++++.+|-++...|++.+..|-+++..|+.||..||++|..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45788999999999999999999999999999999999999999986

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.31  E-value=0.31  Score=39.89  Aligned_cols=45  Identities=33%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .+.-|+.+++.|+.+|..|..+...|++++.+|+.|-.....+|.
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~   63 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555554455554444444444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.31  E-value=0.3  Score=39.53  Aligned_cols=47  Identities=23%  Similarity=0.329  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +.++.|=..++.|+.||..|+.++..++.+...|...|..=+.+|..
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa   53 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA   53 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999998888865

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.21  E-value=0.27  Score=48.66  Aligned_cols=53  Identities=28%  Similarity=0.376  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ++--+..++++..+.+.|..+|..|..+++.+++++..|+-||++|.++++.+
T Consensus       137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l  189 (290)
T COG4026         137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL  189 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445556667777777777777777777788888888888888888877653

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.21  E-value=0.42  Score=53.48  Aligned_cols=41  Identities=24%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      |-+..|..+|+.|...|+.++....+++..|+.|.+.|+..
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667778888888888888888888777777777666654

; GO: 0016021 integral to membrane

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=94.13  E-value=0.0022  Score=66.39  Aligned_cols=62  Identities=31%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKL  336 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~L~-~EN~~L~~el~~L~e~~~~L  336 (421)
                      +-.|.+.||.+|+++|+.+|.+   ||-|++....+|+.+|+.|+ .++..|..+|..|+.+.+.|
T Consensus       147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l  212 (395)
T KOG1414|consen  147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL  212 (395)
T ss_pred             CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence            3467788899999999999999   99999999999999999999 99988888888887644433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.04  E-value=0.27  Score=41.17  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ..+.=|+-+++.|+.+|..|..++..++.....|+.||..|+++...-+
T Consensus        18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq   66 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ   66 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4456677889999999999999999988888889999999998887654

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=93.91  E-value=0.61  Score=46.48  Aligned_cols=48  Identities=25%  Similarity=0.301  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++.+|+++-+.|..||+.|+.....|-.+..+|..+...|+++|.++
T Consensus        97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            356789999999999999999999999999999999999999988876

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.88  E-value=1  Score=42.27  Aligned_cols=69  Identities=23%  Similarity=0.277  Sum_probs=51.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ++.++....+..-+.-......++.++..-++.|..|...|.-++..+.+++.+|+.||..|-+++...
T Consensus       116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~  184 (194)
T PF08614_consen  116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555556667777778888888888888888888888899999999999998887643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.75  E-value=1.2  Score=40.85  Aligned_cols=67  Identities=25%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ...+.|++.+-+--.-++++|+.|+.++..|..+...|..++..|+++...|..+....+.++..+.
T Consensus        34 e~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   34 EMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777778777788888888888888888888888888888888888888878777777777765

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.64  E-value=1.1  Score=40.06  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=46.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .+..|-...||.......++...++.|+..++.|+.++..+..++..+..+...|..++..+...++.
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555677777777777777777777777777777777777777776666666666655555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=93.54  E-value=0.38  Score=38.61  Aligned_cols=50  Identities=20%  Similarity=0.277  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+++++||.++..++.-...|-..+.+...++..|+.+...|+++|..++
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36789999999999999999999999999999999999999999998876

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=93.36  E-value=0.26  Score=37.00  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |+.+-..|+.....|..++..|..||..|+.++..+
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L   38 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL   38 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555555555555555555544

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.12  E-value=0.77  Score=44.51  Aligned_cols=45  Identities=24%  Similarity=0.220  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .+|..+++.|+.|...|...+..++.....++.+...|.+++.++
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=93.11  E-value=0.21  Score=49.87  Aligned_cols=40  Identities=38%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 014660          311 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSA  350 (421)
Q Consensus       311 rVe~L~~EN~~L~~el~~L~e~~~----~L~~EN~~LkekL~~l  350 (421)
                      .+.+|.+||.+|++|+..|++++.    .|+.||++||+.|.-.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            455677777777777766644433    4889999999988743

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=92.78  E-value=0.17  Score=47.56  Aligned_cols=42  Identities=33%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |+++|.++++--++|.-|..||.    +-+.|+.++++||.+|.+|
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDL   43 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDL   43 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            67888888888888888888773    3344444455555544444

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.53  E-value=1.6  Score=41.84  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      .+.++++++.+++.|+.+...++.++...++++.+++.++...+..|
T Consensus        61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=92.41  E-value=0.8  Score=44.74  Aligned_cols=48  Identities=21%  Similarity=0.345  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .+.+++..+.+++.++.++..|+++.+.+..++.+|..|++.|++++.
T Consensus       163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            344555555666666667777777777777888888888888887775

>PRK11637 AmiB activator; Provisional

Probab=92.36  E-value=1.7  Score=45.27  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ....-+.+++.|+.++..++.+...+..+|..+..++..|+.+...|+.+|...
T Consensus        69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444556666666666666666666666666666666666666666666544

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=92.36  E-value=0.58  Score=40.94  Aligned_cols=45  Identities=27%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +|=.++..|++....|..++..|+..+..|..||..|+-+...++
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr   49 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR   49 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999999998886

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK00295 hypothetical protein; Provisional

Probab=92.35  E-value=0.99  Score=36.39  Aligned_cols=49  Identities=18%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +++++||.++..++.-...|-..+.+.+.++..|+.+.+.|..+|+.+.
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4589999999999999999999999999999999999999999998765

>PRK04325 hypothetical protein; Provisional

Probab=92.30  E-value=0.95  Score=37.05  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +++++||.++..++.-...|-..|.+-+.++..|+.+.+.|..+|+.++
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3489999999999999999999999999999999999999999998765

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=92.24  E-value=0.5  Score=35.48  Aligned_cols=42  Identities=43%  Similarity=0.552  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .||...+.|++.-..|..+...|..+...|+.|...|+.+|.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            366777777777777777777777777777788888888775

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK00736 hypothetical protein; Provisional

Probab=92.18  E-value=1  Score=36.26  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +++++||.++..++.-...|-..+.+-..++..|..+.+.|.++|+..+
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4589999999999999999999999999999999999999999998765

>PRK02119 hypothetical protein; Provisional

Probab=92.17  E-value=0.94  Score=37.04  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+++.+||.++..++.-...|-..+.+-+.++..|+.+.+.|+++|+.++
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45778888888888888888888888888888888888899988888765

>PRK02793 phi X174 lysis protein; Provisional

Probab=92.11  E-value=0.97  Score=36.80  Aligned_cols=51  Identities=25%  Similarity=0.212  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      .+++.+||.++..++.-...|-+.+.+.+.++..|..+.+.|..+|+.++.
T Consensus         7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            357888999999988888889888888888889999999999998887653

>PRK11637 AmiB activator; Provisional

Probab=91.88  E-value=1.8  Score=45.05  Aligned_cols=53  Identities=8%  Similarity=0.131  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ...+.++.+++.+++.|..+...+..+|..++.++..+..+...|..+|..++
T Consensus        64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q  116 (428)
T PRK11637         64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE  116 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555666666666666666666666666666666666665543

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=91.78  E-value=1.1  Score=43.76  Aligned_cols=40  Identities=35%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 014660          311 KVDSLIDENASLKSEINQLSENSE---KLRQENAALLEKLKSA  350 (421)
Q Consensus       311 rVe~L~~EN~~L~~el~~L~e~~~---~L~~EN~~LkekL~~l  350 (421)
                      ....|.+||..|++|+..|+.+..   .|+.||.+||+.|...
T Consensus        70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~  112 (276)
T PRK13922         70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK  112 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            344555555555555555554444   6789999999988643

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=91.76  E-value=0.23  Score=47.22  Aligned_cols=42  Identities=31%  Similarity=0.401  Sum_probs=28.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS  330 (421)
Q Consensus       283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~  330 (421)
                      |++|+++++      -+..+.++++|+.+++.|+.+..+|++.+..|.
T Consensus        92 R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~  133 (181)
T KOG3335|consen   92 RQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH  133 (181)
T ss_pred             Hhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667776666      355667788888888888876555555555554

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.75  E-value=1.2  Score=47.55  Aligned_cols=50  Identities=28%  Similarity=0.355  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |--+.|.|+.++.+|+.||.+||..+.+|+..|++|..+-+.+-++|..+
T Consensus       295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~l  344 (502)
T KOG0982|consen  295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEAL  344 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            44566788899999999999999999999999998887765555555543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.68  E-value=2.7  Score=37.65  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .+.+|+...-+.......|=+..+++++.++..++.+-..|..++..+...+..+..|.+.|+..++..
T Consensus        59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~  127 (151)
T PF11559_consen   59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR  127 (151)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445444444444444444555555555555555555555555555555555555555555555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK04406 hypothetical protein; Provisional

Probab=91.60  E-value=1.2  Score=36.57  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +++++||.++..++.-...|-+.+.+.+.++..|+.+.+.|+++|..++
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4678888888888888888888888888888888888888888887655

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.36  E-value=1  Score=41.11  Aligned_cols=52  Identities=40%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el--~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      -++++.+|+.++..|+.|...|...+  ..|......|+.|+..|..+|..++.
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566777777777777777777665  57788888999999999999988875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.12  E-value=1.1  Score=40.76  Aligned_cols=49  Identities=41%  Similarity=0.498  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +...+.|+.++..|+.++..+..+|..|+.++..|+.+...|.++|..+
T Consensus        13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~   61 (143)
T PF12718_consen   13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA   61 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777777777777777777777777777777777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=91.09  E-value=0.86  Score=39.48  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      .+.++++++++++++.|+++|..|+.++..|+.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            345667788888888888888888888888875

>smart00338 BRLZ basic region leucin zipper

Probab=90.99  E-value=2.2  Score=33.20  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      =...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567778888888888888888888888888888877663

>PRK00846 hypothetical protein; Provisional

Probab=90.77  E-value=1.7  Score=36.27  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+++++||.++...+.-...|-..+.+....+..|..+.+.|+++|+.++
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46788888888888888888888888888889999999999999998876

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.69  E-value=4.1  Score=39.55  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ..+..-+++++.|+.+++.|+..|..|...+..+++++.+|..+...+..-...+
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556677788888888888888888888888888888877777766655543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=90.51  E-value=0.92  Score=41.37  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+|..+...|.+++++|..||..|+.++..+.
T Consensus        77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k  108 (135)
T KOG4196|consen   77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK  108 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666677777777777777776666544

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.43  E-value=0.94  Score=48.70  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          316 IDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       316 ~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ..+..+|.++.++|+++..+|......|..+|..
T Consensus       108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~  141 (472)
T TIGR03752       108 QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG  141 (472)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444555555555555555555555556555543

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.38  E-value=1.6  Score=36.17  Aligned_cols=51  Identities=29%  Similarity=0.380  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ==|-++++|..+-..|..|-+.++.....|+.++++|..|.+.-.++|..+
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888888888888888888888888888888887777777653

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.13  E-value=8.7  Score=40.18  Aligned_cols=49  Identities=24%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      -+++.+.|.++-+.|..-.++|+.++++|+++...|......|+.+..+
T Consensus       230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3445555555555566666666666666666666666666677766665

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=90.13  E-value=1.3  Score=39.09  Aligned_cols=47  Identities=23%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      .+|=.++..|++....|..++..|+..+..|..||..|+-+-..|+.
T Consensus         4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~   50 (110)
T PRK13169          4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE   50 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778889999999999999999999999999999999998888763

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=89.59  E-value=4.1  Score=31.72  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      ..+..|+.+...|..++..|..++..|..++..|+.+
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555555555555555555555555555444

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.43  E-value=2.8  Score=47.82  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014660          331 ENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       331 e~~~~L~~EN~~LkekL~~  349 (421)
                      .+...|..|...|..+++.
T Consensus       437 ak~~ql~~eletLn~k~qq  455 (1118)
T KOG1029|consen  437 AKKKQLQQELETLNFKLQQ  455 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444433

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=89.32  E-value=1.6  Score=43.24  Aligned_cols=39  Identities=33%  Similarity=0.482  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .|||+++..+.+++..|+.|+       ..|+.+|-.|-+++.=+|
T Consensus        96 ~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiRylq  134 (248)
T PF08172_consen   96 AELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIRYLQ  134 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence            566666665555555555555       455568888888887665

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=89.29  E-value=1.4  Score=43.52  Aligned_cols=49  Identities=33%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      .|.|=|++|.|==.+-| +-++.+..|+.+++.|+++|-.|-+++.-|+.
T Consensus        87 QRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS  135 (248)
T PF08172_consen   87 QRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQS  135 (248)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444445655444443 23456788888888888888888888887765

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.24  E-value=2.2  Score=35.88  Aligned_cols=47  Identities=28%  Similarity=0.409  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      |-++++|..+-..|..++..++..-..|.+++.+|+.|...-.++|.
T Consensus        24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422         24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555444444443

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=88.81  E-value=0.53  Score=37.54  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          317 DENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .|...|+.+|..|.+++.+|+.||..||....-
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p   46 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP   46 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            455667777888888888888899999987643

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=88.71  E-value=3.9  Score=32.40  Aligned_cols=48  Identities=25%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.+++|...|..|..+...|..++..|+........|-.+-.++|.++
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~   50 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI   50 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356777777777777777777777777777777776766666666543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.62  E-value=2  Score=42.76  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ++|..+++.+..||..|++++.+|+.+++.+..+...|+.++
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~  179 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN  179 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444443333333333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.60  E-value=5.2  Score=43.99  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN  327 (421)
Q Consensus       291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~  327 (421)
                      .....+....-+.+++.|+..+...+.++..|..+..
T Consensus       159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k  195 (546)
T PF07888_consen  159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK  195 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334443333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=88.57  E-value=0.09  Score=54.66  Aligned_cols=41  Identities=34%  Similarity=0.426  Sum_probs=38.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK  323 (421)
Q Consensus       283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~  323 (421)
                      |.|=.++||.+|-|||.|||.+...|+.+.+.+..+|..|.
T Consensus       286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            46678899999999999999999999999999999999988

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.51  E-value=3.2  Score=33.71  Aligned_cols=47  Identities=30%  Similarity=0.402  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          304 EAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~-------el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +++.|..++.....+|..|+.       .+.....++.+|..||..|+.+|...
T Consensus        13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555544444444444       45555666667777777777766544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.44  E-value=8.1  Score=36.96  Aligned_cols=63  Identities=22%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      -..+++....++.+.+-+.-+.+-..-+..+..++.++..|+-++..|..++..|.++...|.
T Consensus        65 ~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   65 KKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677788888888777777777777788888888888888888888877777766664

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=88.43  E-value=1.9  Score=37.37  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS-AQLGNKQEIVL  360 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~-lql~~~~E~~~  360 (421)
                      .+.+|+++++.++++|..|+.+...|+.+...|...-..|.+.... +-+...+|+.+
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy   85 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFY   85 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEE
Confidence            4677888888888888888888888888888877543444444332 34444556644

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.39  E-value=9.6  Score=33.82  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          318 ENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +-..|..++..+..+|..|..+|..|-.+|..
T Consensus        99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34456667777777788888888888777764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.17  E-value=4.3  Score=40.25  Aligned_cols=48  Identities=29%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ..++..|..++..++.+...|..++..|..+...|+.+...|+.++..
T Consensus        88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~  135 (239)
T COG1579          88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER  135 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666666655555555544

>PRK09039 hypothetical protein; Validated

Probab=88.10  E-value=5.8  Score=40.77  Aligned_cols=6  Identities=33%  Similarity=0.501  Sum_probs=2.5

Q ss_pred             cccccC
Q 014660          393 HLFEKN  398 (421)
Q Consensus       393 ~~~~~~  398 (421)
                      -+|..+
T Consensus       226 vlF~~g  231 (343)
T PRK09039        226 VLFPTG  231 (343)
T ss_pred             ceeCCC
Confidence            344433

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=88.09  E-value=0.27  Score=42.35  Aligned_cols=49  Identities=39%  Similarity=0.508  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+|+.|...+..|..+|..|+.++..|..++..+..+...|+..|..++
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq   73 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence            5889999999999999999999999999999999888888888886554

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=87.89  E-value=6.5  Score=37.88  Aligned_cols=54  Identities=24%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      -+.||..+++ ...++..|+.+=..|..++-.+...|..|+.|...||.+....+
T Consensus       163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~  216 (221)
T PF05700_consen  163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK  216 (221)
T ss_pred             HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555444 67778888888888888888888888888888888888877554

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.76  E-value=1.8  Score=47.87  Aligned_cols=45  Identities=29%  Similarity=0.462  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .+..|+.+|+.|+.||..|..++.+|+.++..|+.+...++.++.
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777777776666666666666666555554

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.68  E-value=7.9  Score=39.37  Aligned_cols=12  Identities=17%  Similarity=0.429  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q 014660          335 KLRQENAALLEK  346 (421)
Q Consensus       335 ~L~~EN~~Lkek  346 (421)
                      .+..|...|+.+
T Consensus       110 ~~~~e~~sl~~q  121 (314)
T PF04111_consen  110 EFQEERDSLKNQ  121 (314)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.64  E-value=7.8  Score=37.21  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      -+.+++.+++.|..+++.+++++..++.++..+++.+.
T Consensus        64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~  101 (302)
T PF10186_consen   64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLE  101 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555554444444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=87.61  E-value=3.4  Score=39.10  Aligned_cols=49  Identities=24%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++.+++|+.+++.++.....- .+-..+-+++..|+.++..|+.+|..+
T Consensus        81 ~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~  129 (188)
T PF03962_consen   81 LEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY  129 (188)
T ss_pred             HHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555554443222111 122233344555555666666666543

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=87.58  E-value=4.3  Score=39.83  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |+++.+.+.++...|+++++....+++.+..++..|+.+...+
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~  191 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL  191 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5555555556666666666666666666666666666666554

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.53  E-value=5  Score=41.92  Aligned_cols=52  Identities=19%  Similarity=0.372  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .|-+.+...||.-+..|++||..|.-++..+.++|.+.+.|+++|..+|.+.
T Consensus       123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            4556677778888889999999999999999999999999999988888764

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.42  E-value=2.3  Score=43.13  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  343 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L  343 (421)
                      +.+++.|+.|...|.+++..|+.+...|..|...|
T Consensus        49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l   83 (314)
T PF04111_consen   49 EEELEKLEQEEEELLQELEELEKEREELDQELEEL   83 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=87.39  E-value=3.8  Score=33.26  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014660          307 ELSRKVDSLIDENASLKSEINQL  329 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L  329 (421)
                      .|..+++.|..++.....++..|
T Consensus         9 ~Lr~rLd~~~rk~~~~~~~~k~L   31 (69)
T PF14197_consen    9 TLRNRLDSLTRKNSVHEIENKRL   31 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=87.39  E-value=2.5  Score=37.29  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +|-+|+.-...|.+++..+++++.+|++||+.|-+-|.++
T Consensus        64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL  103 (120)
T KOG3650|consen   64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence            3344444444555666777777778888888888877765

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.36  E-value=1.9  Score=47.28  Aligned_cols=67  Identities=24%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 014660          293 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV  359 (421)
Q Consensus       293 SARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~  359 (421)
                      .|.+.|..-.+.+.++..++..|++|...++..+..|.++...|+.||..|+.+|..++-....|+.
T Consensus       131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl  197 (546)
T KOG0977|consen  131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL  197 (546)
T ss_pred             HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3444444445556666667777777777777777777777777777777777777776544444443

>PRK02119 hypothetical protein; Provisional

Probab=87.29  E-value=4.3  Score=33.20  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGN  354 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l--ql~~  354 (421)
                      ++..|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+  ++..
T Consensus         3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999887  4444

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.26  E-value=5.5  Score=42.07  Aligned_cols=40  Identities=15%  Similarity=0.329  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  345 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke  345 (421)
                      ..|+.+++.|+.++..+..++..|.+++..+..+...+..
T Consensus       361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k  400 (562)
T PHA02562        361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK  400 (562)
T ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=87.23  E-value=5.3  Score=41.21  Aligned_cols=50  Identities=22%  Similarity=0.379  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  354 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~  354 (421)
                      -..|..-+.+.+.+|..|..++..|++++..+..++..||+++...+++.
T Consensus        67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~  116 (319)
T PF09789_consen   67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD  116 (319)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence            35677788888889999999999999999999999999999988877655

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.18  E-value=6.5  Score=37.07  Aligned_cols=41  Identities=20%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ  338 (421)
Q Consensus       298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~  338 (421)
                      ..+.+.++++|+.+++.|+.||..|.+++..+++.|..|..
T Consensus       106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~  146 (161)
T TIGR02894       106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID  146 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777777777777776666653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=87.04  E-value=3.2  Score=35.34  Aligned_cols=38  Identities=39%  Similarity=0.487  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 014660          314 SLIDENASLKSEINQLSENS------EKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       314 ~L~~EN~~L~~el~~L~e~~------~~L~~EN~~LkekL~~lq  351 (421)
                      -|..+|..|+.||..|+.++      .+...||.+|++++..++
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~   64 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ   64 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777543      466788888888887764

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.02  E-value=7.1  Score=37.27  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  341 (421)
Q Consensus       284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~  341 (421)
                      .+.++....+-+..+.+.+.+...|+.++..-+.++..|..++..|..++..|+.+.+
T Consensus        91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~  148 (190)
T PF05266_consen   91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA  148 (190)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666665544555555555544444444444433

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.93  E-value=0.9  Score=48.70  Aligned_cols=32  Identities=19%  Similarity=0.408  Sum_probs=19.4

Q ss_pred             CCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCC--CcccccCC
Q 014660           44 AIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST   84 (421)
Q Consensus        44 ~~p-p~f~s~vas~p~phPYMWG~~qpmmpPYGt--PY~a~Yp~   84 (421)
                      ++| |+|+.+     ++||.+    +.+.+.||-  ||-+|||-
T Consensus       420 ppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~  454 (483)
T KOG2236|consen  420 PPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA  454 (483)
T ss_pred             CCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence            444 677544     677754    345566665  87777753

>PF15294 Leu_zip: Leucine zipper

Probab=86.77  E-value=2  Score=43.49  Aligned_cols=45  Identities=29%  Similarity=0.429  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      |..++..|+.||..|+.++..+..+|.....|...|..+|.+++.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999885

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=86.76  E-value=10  Score=30.41  Aligned_cols=44  Identities=14%  Similarity=0.314  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      |..++...+..|..+.++|.....++..|..+...|+.++..++
T Consensus        16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455567778888888888888888888888888888887765

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.68  E-value=13  Score=34.17  Aligned_cols=75  Identities=21%  Similarity=0.244  Sum_probs=40.1

Q ss_pred             hhhhHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSN----RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       275 ~qdErE~KR~RRk~sN----RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ++-+.++||.+|.-.|    =++..|--.--+...+.+...++.-++++..|..++..+..+...|..|...|+.+-.+
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~   84 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN   84 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666766665443    23344444444555555555555555555556666655555555555555555544444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=86.66  E-value=9.9  Score=36.31  Aligned_cols=52  Identities=27%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +...++.+|+.++.+|+.+...|..+......++.+|..+.+.|++.+.+.+
T Consensus       128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e  179 (190)
T PF05266_consen  128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE  179 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666555555555555566666666666666665544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.59  E-value=4.6  Score=36.07  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDEN  319 (421)
Q Consensus       281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN  319 (421)
                      .-..||+..-..+.+.--.|=.+.-+.|..++-.|..+|
T Consensus        22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333333333333333333343343333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.55  E-value=1.7  Score=44.56  Aligned_cols=46  Identities=35%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ++|..++..|+++|..|+.++..++.+|..|..+|..||+..-.++
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~   68 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ   68 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666777777777777777777777777777777776665543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=86.47  E-value=9.2  Score=38.00  Aligned_cols=65  Identities=20%  Similarity=0.255  Sum_probs=44.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHh
Q 014660          286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN---------SEKLRQENAALLEKLKSA  350 (421)
Q Consensus       286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~---------~~~L~~EN~~LkekL~~l  350 (421)
                      +...-.+.+++.=.-++.++++|+.+|..|+.+.+.+++++..++..         +..|..|...++.++..+
T Consensus        35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l  108 (239)
T COG1579          35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL  108 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            44445677777777788888999999999988888888877766543         345555555555554443

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=86.42  E-value=4.4  Score=37.75  Aligned_cols=18  Identities=33%  Similarity=0.481  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014660          314 SLIDENASLKSEINQLSE  331 (421)
Q Consensus       314 ~L~~EN~~L~~el~~L~e  331 (421)
                      .++.+...|..++..|++
T Consensus        86 ~~~~e~k~L~~~v~~Le~  103 (158)
T PF09744_consen   86 QWRQERKDLQSQVEQLEE  103 (158)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PRK04406 hypothetical protein; Provisional

Probab=86.35  E-value=5.3  Score=32.90  Aligned_cols=46  Identities=15%  Similarity=0.217  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ++.|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999887

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=86.23  E-value=8.1  Score=41.29  Aligned_cols=70  Identities=23%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ||++-.+++=+.-.++....+.+...|+.++..|+.++..|..+|.+....+.+++..+..+...|..++
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            3444444444444455555667778888888888888888888888888777777777777777776664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.19  E-value=5.6  Score=39.32  Aligned_cols=44  Identities=11%  Similarity=0.219  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      -+|..+++.|++|...||-+|+++.-+++++....+.|-..|..
T Consensus        57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~  100 (263)
T PRK10803         57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS  100 (263)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666666666666666666666655554

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=86.13  E-value=4  Score=34.92  Aligned_cols=43  Identities=35%  Similarity=0.457  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  343 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L  343 (421)
                      |+-|-...+.+|+.|+.+|..|..++..|+.++...+.|-..|
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L   82 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL   82 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455556666666666666666666665555555554444

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=85.86  E-value=4.8  Score=41.09  Aligned_cols=58  Identities=24%  Similarity=0.347  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          280 ELKRERRKQSNRESARRSRLRKQ---AEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       280 E~KR~RRk~sNRESARRSRlRKq---a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      ..||+.||..--..-+|-|..++   -+|++|+.|-++|+.+-.+|.+||..|++-+....
T Consensus       229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666633333333333333   35666677777777777777777777776555443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=85.85  E-value=3.7  Score=35.53  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSL--IDENASLKSEINQLSENSEKLRQENAALL  344 (421)
Q Consensus       304 ~leeLE~rVe~L--~~EN~~L~~el~~L~e~~~~L~~EN~~Lk  344 (421)
                      ++..||.+++.|  ..+...|+-++.+++-++..+..+.+.+.
T Consensus        50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~   92 (106)
T PF10805_consen   50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS   92 (106)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344444444444  44444444444444444444444444333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.84  E-value=3.2  Score=42.34  Aligned_cols=73  Identities=27%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             hhHHHHHHHHHHHhHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          277 NERELKRERRKQSNRESAR-RSRLR-----KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       277 dErE~KR~RRk~sNRESAR-RSRlR-----Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .|-|.|-.+-++.|..==. ++.+-     =|..|++|+..+.+|.+++.....++.+++..+..|+.|...|+++|..
T Consensus        87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~  165 (302)
T PF09738_consen   87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ  165 (302)
T ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777887732110 11111     1455677777777777777777777888888888888999999988875

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=85.82  E-value=12  Score=37.87  Aligned_cols=49  Identities=24%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.+++.++.++.+.+++...++.++...+.++..|+.+-..|...+..+
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~  254 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666677777777777777777777777777777766666665544

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=85.82  E-value=2.7  Score=46.64  Aligned_cols=53  Identities=25%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN  354 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~  354 (421)
                      ..++.+||.|-.+|..|..++..++++|++.+.+...|..+||-.+.++|...
T Consensus        92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~  144 (907)
T KOG2264|consen   92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL  144 (907)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence            46788899999999999999999999999998888889999998888776443

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=85.69  E-value=3  Score=32.71  Aligned_cols=31  Identities=35%  Similarity=0.559  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLS  330 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~  330 (421)
                      +.++++.+|+.+++.|+.+|..|..++..|+
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~   51 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLK   51 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455667777777777777777777777773

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=85.61  E-value=6.3  Score=43.37  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      +...++...+++-|..||..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...+|.+
T Consensus       123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            333344444445555555444333344445555555544444444444444444444444444444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.53  E-value=7.1  Score=44.79  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 014660          328 QLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       328 ~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .|..+++.|.....+|-.+|.+
T Consensus       441 ql~~eletLn~k~qqls~kl~D  462 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQLSGKLQD  462 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Confidence            3333333333333444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.08  E-value=11  Score=41.63  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          321 SLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       321 ~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      .|..++..++.++..|+.++..|..+
T Consensus       210 ~L~~q~~e~~~ri~~LEedi~~l~qk  235 (546)
T PF07888_consen  210 SLKEQLAEARQRIRELEEDIKTLTQK  235 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444443333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=84.70  E-value=8.5  Score=45.25  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          294 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       294 ARRSRlRKqa~leeLE~rV-e~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++++.+....+.+++.+. ..|..+..++..+++.|.++.+.|+.++..|++++.++
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~  427 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV  427 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555 45555556666667777777777777777777777665

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=84.65  E-value=1.4  Score=39.33  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          320 ASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       320 ~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      ..|+.+|..|.+++..|+.||..||.-
T Consensus        70 e~Lk~qI~eL~er~~~Le~EN~lLk~~   96 (123)
T KOG4797|consen   70 EVLKEQIRELEERNSALERENSLLKTL   96 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555566666666677777653

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=84.54  E-value=4  Score=32.20  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      +++||.++..|+.....++++++.+++.++.+.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~   34 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIE   34 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666665555555555555444443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF15058 Speriolin_N: Speriolin N terminus

Probab=84.51  E-value=2.3  Score=41.16  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .|.|.++.+.|-.||.+|++.++-++        ||.+||.-|.+.
T Consensus         7 yeGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ea   44 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALGEA   44 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHh
Confidence            46778888888888888888877766        788888887764

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=84.50  E-value=7.5  Score=37.63  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          278 ERELKRERRKQSNRESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       278 ErE~KR~RRk~sNRESARRSRlRKqa~----leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      |.-.+|.||-+..+.++=.-+-+=-++    +...-.++..|+..|+.|..+..+|+..|.-|
T Consensus        19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL   81 (195)
T PF10226_consen   19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL   81 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            445688999888888876544433332    33334566778888888888888888777533

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PRK02793 phi X174 lysis protein; Provisional

Probab=84.35  E-value=7.1  Score=31.82  Aligned_cols=51  Identities=22%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQ  356 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l--ql~~~~  356 (421)
                      .+|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+  ++...+
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            468899999999999999999999998888888889999998887  454443

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=84.33  E-value=3.2  Score=36.29  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      |...+..|+.++..+..++.+|+..+.++..+...||.+
T Consensus        78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E  116 (118)
T PF13815_consen   78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444555555555555555555444444455555444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.25  E-value=18  Score=33.18  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014660          311 KVDSLIDENASLKSEINQLS  330 (421)
Q Consensus       311 rVe~L~~EN~~L~~el~~L~  330 (421)
                      +++.++.....+.+++..+.
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=83.99  E-value=4.4  Score=36.10  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      +|=.+|..|+.....|..++..|++++..|..||..|+-+...++.
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~   50 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE   50 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence            4567899999999999999999999999999999999999998863

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.83  E-value=10  Score=38.50  Aligned_cols=45  Identities=27%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      .+++.|..++..+..+...++.++..|+.++..+..+...|.+++
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555444444444444444444443333333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.76  E-value=21  Score=31.66  Aligned_cols=59  Identities=20%  Similarity=0.248  Sum_probs=38.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA  341 (421)
Q Consensus       283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~  341 (421)
                      +.+-++.-.|..+-|+..=..+-++|+..+..|++++..+.+++..|+.++..++....
T Consensus        17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le   75 (107)
T PF09304_consen   17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE   75 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666777777777777777777777777666665554443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=83.75  E-value=4.7  Score=33.24  Aligned_cols=45  Identities=33%  Similarity=0.374  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSE--------KLRQENAALLEKLKSA  350 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~--------~L~~EN~~LkekL~~l  350 (421)
                      .+.+..++.|+.||-.|+=+|-.|.+++.        .+..||-.|+.++..+
T Consensus         3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L   55 (75)
T PF07989_consen    3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESL   55 (75)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777766666554        2344555555555444

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=83.74  E-value=3.2  Score=43.42  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAA  342 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~  342 (421)
                      |+.+++.|+.++..|..++..++++..+++.|+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (398)
T PTZ00454         27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKR   61 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555554433333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=83.70  E-value=8.9  Score=43.24  Aligned_cols=8  Identities=50%  Similarity=0.588  Sum_probs=3.7

Q ss_pred             hhhhhhhc
Q 014660          371 TENLLSRV  378 (421)
Q Consensus       371 ~e~lls~v  378 (421)
                      +|.||+.|
T Consensus       589 ~e~L~~aL  596 (697)
T PF09726_consen  589 TEVLMSAL  596 (697)
T ss_pred             HHHHHHHH
Confidence            44444444

; GO: 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.53  E-value=4.3  Score=39.21  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          323 KSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       323 ~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ..++..|+..+..|+.+|+.|..+...+
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rql   93 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQL   93 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.47  E-value=6.1  Score=43.59  Aligned_cols=47  Identities=32%  Similarity=0.403  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      ++|+.+|+.+...+......|..|+....++|+.|..+|..|+.+|.
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777765

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=83.38  E-value=9.2  Score=38.82  Aligned_cols=93  Identities=24%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhh-----cccccccccccccCC
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSE-----------KLRQENAALLEKLKSAQ-----LGNKQEIVLNEDKRV  366 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~-----------~L~~EN~~LkekL~~lq-----l~~~~E~~~~~~~~~  366 (421)
                      .++..|+.+...|+.+|+.|+-|+.+++++.+           .|+.+|..+++.-..++     +.+..+ .+.-+++.
T Consensus        52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND-dLErakRa  130 (333)
T KOG1853|consen   52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND-DLERAKRA  130 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHhhhh
Confidence            34556666666666677777777666655432           34444444444333221     112111 12134577


Q ss_pred             CCcchhhhhhhccCCCCccccccccccccccC
Q 014660          367 TPVSTENLLSRVNNSGTVDRNMEEGGHLFEKN  398 (421)
Q Consensus       367 ~p~~~e~lls~vd~~~~~~~~~~~~~~~~~~~  398 (421)
                      .-++.++|-+++|..  ..|+.--+.+++|+-
T Consensus       131 ti~sleDfeqrLnqA--IErnAfLESELdEke  160 (333)
T KOG1853|consen  131 TIYSLEDFEQRLNQA--IERNAFLESELDEKE  160 (333)
T ss_pred             hhhhHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence            778899999998854  334444455565554

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=83.34  E-value=13  Score=34.69  Aligned_cols=37  Identities=35%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +++++..+.+|++.|++++.+.+.|...||.|.+.++
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~  188 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ  188 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677888888888888888889999999888765

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=82.93  E-value=3.8  Score=31.92  Aligned_cols=48  Identities=25%  Similarity=0.252  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ++..+++|+.++..   |-..=...-...+.++.+|+.||..|+++|.-++
T Consensus         2 w~~Rl~ELe~klka---erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    2 WLLRLEELERKLKA---EREARSLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             HHHHHHHHHHHHHH---hHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556666655443   2111111233445555666667777777776444

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=82.92  E-value=5.2  Score=31.38  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      +..+..++..|+.++..|+.++..|+++...|
T Consensus        19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   19 YYQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555555555555555555555555555

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=82.84  E-value=7.5  Score=37.59  Aligned_cols=39  Identities=31%  Similarity=0.466  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ..++..|..+|..|..+...|..+...|-.++..|+.+|
T Consensus       101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            333333333333333333333333333333333333333

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=82.83  E-value=8.9  Score=31.37  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |-+.+..|..+-+.|......+...|..|+.++..++.+...|+.++...
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~   59 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL   59 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777777777776653

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=82.83  E-value=9.6  Score=41.17  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccc
Q 014660          285 RRKQSNRESARRSRLRKQA----EAEELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKLKSAQLGNKQ  356 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa----~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L----~~EN~~LkekL~~lql~~~~  356 (421)
                      +-.++|=++++.+-.||.+    .+++++.++..++.+|..|.+....++.++.++    ..++..+.++|.+|+ .+.+
T Consensus       367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq-EQlr  445 (493)
T KOG0804|consen  367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ-EQLR  445 (493)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            4455677777777776654    455677777777878877777665444444333    333344444444444 3445


Q ss_pred             ccccc
Q 014660          357 EIVLN  361 (421)
Q Consensus       357 E~~~~  361 (421)
                      +++++
T Consensus       446 Dlmf~  450 (493)
T KOG0804|consen  446 DLMFF  450 (493)
T ss_pred             hHhee
Confidence            55555

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=82.71  E-value=19  Score=36.17  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccc
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLN  361 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~~~  361 (421)
                      +...+..+..+|..+.+++..-++....|+.++..|+++++.++  ....+|+++.
T Consensus       177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~  232 (258)
T PF15397_consen  177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFA  232 (258)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhH
Confidence            44556677889999999999999999999999999999999975  4455777774

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.48  E-value=9.9  Score=31.59  Aligned_cols=51  Identities=24%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      .+++.+||.++..-+.-..+|...+...+....++..+.+.|-+++++++.
T Consensus         7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~   57 (72)
T COG2900           7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            356788888888888888888888888888888888899999999988763

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.36  E-value=4.5  Score=36.96  Aligned_cols=47  Identities=32%  Similarity=0.453  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~--~~L~~EN~~LkekL~~lq  351 (421)
                      +.+|+.++..|+.++..|+.++..|....  ..|..+...|++++..++
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~  129 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE  129 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666554  556666666666665543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=12  Score=37.90  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcccccccccccc
Q 014660          288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ----ENAALLEKLKSAQLGNKQEIVLNED  363 (421)
Q Consensus       288 ~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~----EN~~LkekL~~lql~~~~E~~~~~~  363 (421)
                      +++.--++.--.+....++++..+++.++.++.++..++..|+.++..|+.    ++..|+.++..++.-  +....|-+
T Consensus        44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n--G~~t~Yid  121 (265)
T COG3883          44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN--GTATSYID  121 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChhHHHH
Confidence            333333444445556666666666666666666666666666666655533    344444444444321  11222211


Q ss_pred             cCCCCcchhhhhhhccCC
Q 014660          364 KRVTPVSTENLLSRVNNS  381 (421)
Q Consensus       364 ~~~~p~~~e~lls~vd~~  381 (421)
                      .-.-.-+--+|++||+.-
T Consensus       122 vil~SkSfsD~IsRvtAi  139 (265)
T COG3883         122 VILNSKSFSDLISRVTAI  139 (265)
T ss_pred             HHHccCcHHHHHHHHHHH
Confidence            111122455677776643

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=82.08  E-value=2.4  Score=44.14  Aligned_cols=24  Identities=46%  Similarity=0.396  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          313 DSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       313 e~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      ..|++||..|++|++.|+.+.++|
T Consensus        35 ~aLr~EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   35 FALRMENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHHH
Confidence            344445555555555555544444

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein

Probab=82.04  E-value=25  Score=31.87  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN-~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +..|+.....|+.|. ..++.++..|---+..+...+..+|.+|+.+
T Consensus        64 ~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L  110 (136)
T PF04871_consen   64 VKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL  110 (136)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence            334444444444333 3444555555555566667777777777755

This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=82.03  E-value=4.2  Score=39.45  Aligned_cols=30  Identities=43%  Similarity=0.509  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          318 ENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ||..|..+|..+.+++..|+.||..|++-.
T Consensus       126 ENe~Lh~~ie~~~eEi~~lk~en~~L~ela  155 (200)
T PF07412_consen  126 ENEKLHKEIEQKDEEIAKLKEENEELKELA  155 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555443

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PRK00295 hypothetical protein; Provisional

Probab=81.87  E-value=9  Score=30.90  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      |+.++..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L   45 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777777777777777777777777766

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=81.87  E-value=9.2  Score=34.49  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      .||..|+..|+.|+..+..-...|..++.-|+-.+.+.|.++..+..
T Consensus        28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~   74 (134)
T PF08232_consen   28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY   74 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            46777777888887777777777777777778788888888776543

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.74  E-value=9.7  Score=38.58  Aligned_cols=12  Identities=42%  Similarity=0.473  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 014660          335 KLRQENAALLEK  346 (421)
Q Consensus       335 ~L~~EN~~Lkek  346 (421)
                      .|+.|...|+++
T Consensus       234 el~~el~~l~~~  245 (325)
T PF08317_consen  234 ELQEELEELEEK  245 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=81.72  E-value=22  Score=29.92  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSL-----IDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       303 a~leeLE~rVe~L-----~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .++..||.+++.-     ......|..++..|+.+...|..+|..|+.++.
T Consensus        49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566666655522     234556778888888888888999999998875

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=81.72  E-value=14  Score=34.95  Aligned_cols=42  Identities=21%  Similarity=0.483  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      ..+|+.++..|+.++..|..++..|+.+++.++..+..+++.
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~  163 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE  163 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568888888888888888888888888888777666655444

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=81.68  E-value=5.7  Score=36.06  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +....+-+..|+.||..|+..+-.+++.++.=+.....|+++|+..|
T Consensus        80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q  126 (126)
T PF13118_consen   80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ  126 (126)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45556677889999999999999999999999999999999998543

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=81.53  E-value=7.8  Score=38.64  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       288 ~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      .+-|+.+|.--..-+.++.+|+.+.+.|+.++.+|+.++..|+..+.
T Consensus       207 ~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~  253 (269)
T KOG3119|consen  207 RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL  253 (269)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666655666777788888888888888888888888876443

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.27  E-value=15  Score=38.95  Aligned_cols=11  Identities=18%  Similarity=0.244  Sum_probs=4.1

Q ss_pred             cccccCCCCCC
Q 014660          140 LAMSIGNASAE  150 (421)
Q Consensus       140 l~m~~g~~~~~  150 (421)
                      ++.++|.+-+|
T Consensus        29 ~~~i~G~NG~G   39 (562)
T PHA02562         29 KTLITGKNGAG   39 (562)
T ss_pred             EEEEECCCCCC
Confidence            33333333333

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=81.27  E-value=5.4  Score=31.52  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ++.|+.+...|...+..++.+++.++.+...|.+-+
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env   37 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENV   37 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK03918 chromosome segregation protein; Provisional

Probab=81.18  E-value=17  Score=40.77  Aligned_cols=15  Identities=27%  Similarity=0.616  Sum_probs=10.6

Q ss_pred             CCcccccCCCCCCCC
Q 014660          138 DGLAMSIGNASAESA  152 (421)
Q Consensus       138 ~Gl~m~~g~~~~~~~  152 (421)
                      +|+++++|.+-+||+
T Consensus        23 ~g~~~i~G~nG~GKS   37 (880)
T PRK03918         23 DGINLIIGQNGSGKS   37 (880)
T ss_pred             CCcEEEEcCCCCCHH
Confidence            367788887767664

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.01  E-value=20  Score=33.58  Aligned_cols=46  Identities=22%  Similarity=0.269  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ..|+.++..|+.+...+..-+..|+.++..|..++..|.+++..++
T Consensus       126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen  126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444455555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=81.01  E-value=23  Score=30.01  Aligned_cols=64  Identities=17%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ++...++..+..=..|+..+..|++++..|..|...-..+.-.+....+.|..|+..|+..+..
T Consensus         7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K   70 (96)
T PF08647_consen    7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK   70 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5566677777888889999999999999999999999999999999999999999999888754

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=80.96  E-value=9.8  Score=42.45  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          288 QSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       288 ~sNRESARRSRlRK-qa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ..+|..+.+.+..+ +.+..+|+.+++.|+.++..|+.++.+++.
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444443332 334555555555555555555555555543

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=80.90  E-value=16  Score=29.28  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ  338 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~  338 (421)
                      +.-.-.++.++..-+..|..|..+|..|++++..+++
T Consensus        24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344556677777778888888888888877766654

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK14127 cell division protein GpsB; Provisional

Probab=80.84  E-value=3.9  Score=36.14  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      +.|+++...++.|..||..|+.++.+|++++..++
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~   64 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT   64 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666655444333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=80.73  E-value=13  Score=33.08  Aligned_cols=55  Identities=18%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .+|..--|.-.++|..+-+.|+.-+..|+.+...+.+++..|..+...++..|..
T Consensus        22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555566666666666666666666666666666666666666655543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins

Probab=80.45  E-value=1.9  Score=32.47  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          315 LIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      |-..|..|..++..|..++..|..||-.||+++
T Consensus        12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~   44 (46)
T PF07558_consen   12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV   44 (46)
T ss_dssp             ------------------HHHHHHHHHHHHHHH
T ss_pred             HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence            334445555555555555555555555555554

Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.

>PRK04325 hypothetical protein; Provisional

Probab=80.37  E-value=8.6  Score=31.49  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ...|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus         4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L   49 (74)
T PRK04325          4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL   49 (74)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999998888888889999988877

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=80.32  E-value=18  Score=33.75  Aligned_cols=44  Identities=27%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +|..+++.|+.+|..|...+..+..+...|..+...|+.++..+
T Consensus        93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l  136 (158)
T PF09744_consen   93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL  136 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence            34444555555555555444444444444444444444444443

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.30  E-value=15  Score=42.41  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .....+-..=+--+.+-...++.|.+.+..|+.||.+|..++..+.++..+|+.++.-||.+|+.+
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~  718 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII  718 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            344444555666777788889999999999999999999999999999999999999999999843

>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli

Probab=80.24  E-value=18  Score=31.98  Aligned_cols=49  Identities=27%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN  327 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~  327 (421)
                      +.+||+-+.++|..+||||-+.    |+.-+-.+-.+-..|..+|.-+.++..
T Consensus        48 MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqq   96 (121)
T PF10669_consen   48 MKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQ   96 (121)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHH
Confidence            5678888888899999887543    344444444444446667666655543

The function is currently unknown.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.17  E-value=7.2  Score=39.33  Aligned_cols=48  Identities=29%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +.+++.|..+|+.+..+...+..++.++.+++.+|..+...|++.|.+
T Consensus        51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555556655555555555555555554

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=80.13  E-value=3.7  Score=44.34  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          305 AEELSRKVDSLIDENASLKSEI---------------NQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el---------------~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ++.|..+-+.|++||.+|+++.               .+|.++.++|..|.++|+..|.+++
T Consensus        75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~  136 (472)
T TIGR03752        75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ  136 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666666665533               2333445555555555666665553

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=80.03  E-value=27  Score=33.71  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ...|-.-...+..||..|+.+|..|.+++..|+..+..|..+-..++
T Consensus       151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~  197 (206)
T PF14988_consen  151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ  197 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566678889999999999999999999888888888877665

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.01  E-value=36  Score=32.29  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEI  326 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el  326 (421)
                      .+.+|+.+.+.|+.+...|+.++
T Consensus       128 ~i~~L~~e~~~L~~~~~~l~~~~  150 (189)
T PF10211_consen  128 EIEELEEEKEELEKQVQELKNKC  150 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	2e-16
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	3e-16
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-15
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-15
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	2e-15
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-15
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-13
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	6e-12
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	5e-11
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	1e-10
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	1e-09
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	6e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	8e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 16/58 (27%), Positives = 34/58 (58%)

Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338
           +K+ ++ + N+ +A R R +K+AE E L+ +   L  +N +LK   + L++  + L+ 
Sbjct: 1   MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 71.7 bits (176), Expect = 3e-16
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
           KRE R   NRE+AR SR +K+   + L  +V  L ++N +L  E+  L +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
           KR +  + NR +A RSR +++   + L +K + L   N  L+SE+  L     +L+Q 
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338
           KR  R++ N+ +A + R R++   + L  + D L DE ++L++EI  L +  EKL  
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
             +LK+ RR   NR  A   R+++  + EEL ++   L  E   L SE   +    + LR
Sbjct: 33  IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92

Query: 338 QENAALLEKLKSAQ 351
            +  AL    ++  
Sbjct: 93  SKYEALQNFARTVA 106

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 68.5 bits (168), Expect = 5e-15
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
           K ER++  NR +A +SR RK      L  KV +L  +N+ L S  N L E   +L+Q+
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
              LK++RR   NR  A+  R ++  +   L  +   LI +   LK E+++L+   +  +
Sbjct: 23  VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82

Query: 338 QENAALL 344
            ++  L 
Sbjct: 83  VKSEKLA 89

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
           N  +    +RK  NR + R  R RK+   + L  +V +L + ++S   E +QL +   +L
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62

Query: 337 RQENAAL 343
            +E   L
Sbjct: 63  EEELRIL 69

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 57.7 bits (139), Expect = 5e-11
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
           ++   + + R++ N  + R+SR + +    E   KV  L  EN  L+ ++ QLS     L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 337 RQ 338
           R 
Sbjct: 70  RN 71

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
            +   LKR R    N E+ARRSR RK    ++L  KV+ L+ +N  L++E+ +L +
Sbjct: 7   SDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338
            R++ N  + R+SR + +    E   KV  L  EN  L+ ++ QLS     LR 
Sbjct: 18  IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Length = 152

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 238 SPGMPTKLELRNAPGMNVKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRS 297
           +  M   L  R     + +A    + Q  +       + ++  L            ++  
Sbjct: 23  TDSMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQ 82

Query: 298 RLRK-QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346
            +R+ +      ++  + L     S   E N L +    L++E++ L+ +
Sbjct: 83  EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 19/83 (22%)

Query: 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI-------- 326
           +  E E  R+ R++      +R RL++   A +          E A  K ++        
Sbjct: 80  LTQEPESIRKWREE------QRKRLQELDAASK--VMEQEWR-EKA--KKDLEEWNQRQS 128

Query: 327 NQLSENSEKLRQENAALLEKLKS 349
            Q+ +N    R  + A  ++  +
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDA 151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 275  IQNERELKRERRKQSNRESARRSRLRKQAEA-----EELSRKVDSLIDENASLKSEINQL 329
            +Q E EL  E  +   R +A++  L +         EE   +   L  E   ++ ++  L
Sbjct: 901  LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960

Query: 330  SENSE-------KLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSG 382
             E  E       KL+ E      K+K  +     +I++ ED+         LL    +  
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKME----DDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 383  TVDRNMEEGGHLFEKNSNSGAKLHQLLD 410
            T +   EE     +  +    K   ++ 
Sbjct: 1017 TTNLAEEE--EKAKNLTKLKNKHESMIS 1042

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL----SENS 333
           +RELK+ + +  + E  ++  +  + +  +L RK+D    E  SL  ++N L    S  +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 334 EKLRQENAALLEKLKSAQLGNKQEIVLNED 363
           EKLR +   L    + A+    + + L E+
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 278 ERELKRERRKQSN--RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
            R LK     Q    R  A+R   + + EA      V+     +  L+++I QL    ++
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARS----VERYKKLHIGLENKIMQLQRKIDE 939

Query: 336 LRQENAALLEKLKSAQLGNKQEI 358
             +E  +LLEK+ + ++    E 
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTET 962

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335
           Q   +L+R +R           RL +   A E +  ++S +DE  SL   + +L + +  
Sbjct: 116 QANDDLERAKRATIMSLEDFEQRLNQ---AIERNAFLESELDEKESLLVSVQRLKDEARD 172

Query: 336 LRQENAALLEKLKSAQ 351
           LRQE A    + +  +
Sbjct: 173 LRQELAVRERQQEVTR 188

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 4/110 (3%)

Query: 15  PSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPY 74
             +  P  Q    M     A       ++ +PP    P             PAQ  +   
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT----PAQEQLHQQ 72

Query: 75  GAPYAAIYSTGGVYAHPAVPLGSHAHNHGVPTSPAAVTPLNTEAPTKSSG 124
                   +   ++  P V   ++            +          + G
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.52
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.41
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.4
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.36
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.29
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.2
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.04
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.89
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.86
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.78
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.49
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.68
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	97.01
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.59
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	95.62
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.52
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.5
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.83
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.79
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	94.66
3m48_A	33	General control protein GCN4; leucine zipper, synt	94.54
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	94.22
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.08
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	94.06
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	94.05
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	93.83
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	93.63
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	93.57
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.27
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.24
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	93.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.0
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	92.91
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	92.57
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	92.54
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	92.47
2bni_A	34	General control protein GCN4; four helix bundle, a	92.19
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.1
1uo4_A	34	General control protein GCN4; four helix bundle, c	92.1
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	92.07
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	91.71
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	91.66
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	91.52
2hy6_A	34	General control protein GCN4; protein design, para	91.52
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	91.24
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	91.22
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	90.97
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	90.84
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	90.68
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	90.43
1fmh_A	33	General control protein GCN4; coiled coil, leucine	90.13
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.07
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	89.71
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	89.66
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	89.61
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	89.16
2wt7_B	90	Transcription factor MAFB; transcription, transcri	88.45
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.93
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	87.64
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	87.39
3htk_A	60	Structural maintenance of chromosomes protein 5; S	87.17
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	87.07
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	86.93
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	86.78
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	86.64
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.61
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	86.55
3u06_A	412	Protein claret segregational; motor domain, stalk	86.52
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	86.48
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.66
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.47
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	85.45
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	85.42
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	85.31
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	85.2
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	84.9
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.79
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	84.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.55
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	84.34
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.29
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	84.28
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.26
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	84.21
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	84.17
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	84.0
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	83.66
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	83.65
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	83.47
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	83.45
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	83.38
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	83.31
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.23
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.1
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	82.97
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	82.93
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	82.88
3bas_A	89	Myosin heavy chain, striated muscle/general contro	82.84
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.82
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	82.73
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	82.2
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	82.14
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.11
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	82.01
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.38
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	81.24
2j5u_A	255	MREC protein; bacterial cell shape determining pro	81.24
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	81.07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.89
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	80.85
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	80.61
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	80.46
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	80.43
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	80.39

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.52  E-value=1.4e-14  Score=110.36  Aligned_cols=52  Identities=37%  Similarity=0.470  Sum_probs=49.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS  333 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~  333 (421)
                      ||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|+++|
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999998755

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.41  E-value=7.5e-13  Score=101.89  Aligned_cols=55  Identities=31%  Similarity=0.455  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L   55 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL   55 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999998744433

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.40  E-value=1.1e-12  Score=101.84  Aligned_cols=56  Identities=34%  Similarity=0.528  Sum_probs=51.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      ||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk   57 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999988887555444

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.36  E-value=1.1e-12  Score=101.44  Aligned_cols=54  Identities=37%  Similarity=0.470  Sum_probs=49.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  335 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~  335 (421)
                      |++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|++++..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~   54 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ   54 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999998874433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.29  E-value=4.2e-12  Score=99.08  Aligned_cols=51  Identities=33%  Similarity=0.492  Sum_probs=44.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      ++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus        11 ~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445999999999999999999999999999999999999999987553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.20  E-value=4e-11  Score=93.30  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      +|+.+++++||.||+|||.||++++++|+.+++.|+.+|..|..++..|+.       |+..|+.-|.
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~-------E~~~Lk~ll~   61 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK-------EIQYLKDLIE   61 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence            478899999999999999999999999999999999999999999988887       5666665553

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.04  E-value=5.7e-10  Score=88.95  Aligned_cols=61  Identities=30%  Similarity=0.353  Sum_probs=56.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL  344 (421)
Q Consensus       284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk  344 (421)
                      .||+..||.|+|..|.||++|+.+||.+|..|+.++..|..++..|+.++..|..||..||
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5699999999999999999999999999999999999999999999998888888888765

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.89  E-value=5.4e-09  Score=86.47  Aligned_cols=64  Identities=28%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.+...|+.+|.+||+|||.++++...+++.+++.|++||..|+.+|..|+.       |+..|+.-|..+
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-------E~~~Lr~ll~~~   76 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------ELSTLRNLFKQL   76 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence            3345667888999999999999999999999999999999999999998887       556666666543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.86  E-value=7.8e-09  Score=83.95  Aligned_cols=55  Identities=29%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL  336 (421)
Q Consensus       282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L  336 (421)
                      +...|+.+|++||+|||.++++...+++.+|..|+.||..|+.+|..|+.++..|
T Consensus        15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L   69 (78)
T 1gu4_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL   69 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555678899999999999999999999999999999999999999888744433

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.78  E-value=1.6e-10  Score=98.81  Aligned_cols=57  Identities=28%  Similarity=0.346  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      .++..++|.+||+++||.+|++||.||.+++++||.++..|..+...|..|+..|+.
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~   86 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999986666655555544444444443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.49  E-value=7.3e-07  Score=74.24  Aligned_cols=69  Identities=26%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      -.+-..+|..||.++||.+|+-||.||..+.++||.++..|..+...|+.++..+..       |...++.++..+
T Consensus        20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L   88 (90)
T 2wt7_B           20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence            446678899999999999999999999999999998888777777666666666665       666666666544

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.68  E-value=7.5e-05  Score=54.16  Aligned_cols=40  Identities=33%  Similarity=0.437  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      |+|+.+||.++.+|+..|.+|..+++.|+.       ||..||+.|+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~-------EN~mLRqvl~   41 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQN-------ENQMLRHILK   41 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHhc
Confidence            589999999999999999999998888875       9999999886

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=97.01  E-value=0.0029  Score=47.73  Aligned_cols=47  Identities=32%  Similarity=0.435  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+.|-++|+.|+.||..|++|++.-..++.+|+.|-.-+|+-|+.++
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            57899999999999999999999999999999999999999998876

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.59  E-value=0.00095  Score=55.62  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014660          279 RELKRERRKQSNRESARRSRLRKQAEAEELSR  310 (421)
Q Consensus       279 rE~KR~RRk~sNRESARRSRlRKqa~leeLE~  310 (421)
                      ..+|..||+.+||.+|++||.||.+.+++|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            44577889999999999999999999888763

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=95.62  E-value=0.043  Score=46.51  Aligned_cols=50  Identities=28%  Similarity=0.380  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          302 QAEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~-------el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      -+++-+||.+++.|+.||..|+.       +|..|..++++|+.||+.|+.+-.+-+
T Consensus        36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34566799999999999988887       788888889999999999988877643

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.52  E-value=0.049  Score=42.36  Aligned_cols=41  Identities=32%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE  345 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke  345 (421)
                      +..-|.++.+|.+-|..|.+|+..|+.++..|.+||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            35567899999999999999999999999999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.50  E-value=0.057  Score=44.17  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +.+.-|+.+++.|+.+|..|..++..++.....|..||.+|+++....+
T Consensus        20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq   68 (81)
T 2jee_A           20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ   68 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3455667788888888888888888888888888888888888887654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.16  E-value=0.086  Score=46.51  Aligned_cols=52  Identities=21%  Similarity=0.198  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..++
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566777777777777777777776666666666666666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.83  E-value=0.25  Score=50.40  Aligned_cols=42  Identities=24%  Similarity=0.396  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++.+.|++|...|+.+++..+++..++..|+..++++|+.+
T Consensus       536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.79  E-value=0.076  Score=44.96  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 014660          330 SENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       330 ~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      ++...+|+.|+..||++|..++.
T Consensus        74 ~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           74 REDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            35556777778888887776654

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=94.66  E-value=0.15  Score=39.19  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=23.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL  322 (421)
Q Consensus       286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L  322 (421)
                      .+-+||.++|+||.|=+..++....-...-..||..|
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            3445999999999998876665554444333344333

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=94.54  E-value=0.036  Score=38.39  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      +..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999999999999985

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=94.22  E-value=0.054  Score=37.68  Aligned_cols=28  Identities=29%  Similarity=0.512  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ++..||.+|+.|-.+|..|..++.+|++
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            5788999999999999999999998875

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.08  E-value=0.18  Score=36.76  Aligned_cols=45  Identities=29%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      -+..||.+|..|+.||..|+++.-.-+.-+.-|+.|...||.+|.
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie   48 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE   48 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence            356899999999999999999887777778888889999988874

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=94.06  E-value=0.095  Score=36.86  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      ++..||.+|+.|-.+|..|..++.+|++-+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            5778999999999999999999999987543

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=94.05  E-value=0.19  Score=37.46  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +.++..|+.-|..|..++..|+..|..++.|+.+|+.-|++
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq   43 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999999999988875

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=93.83  E-value=0.078  Score=37.29  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      ++..||.+|+.|-.+|..|..++.+|++.+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~   32 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENA   32 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999987554

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=93.63  E-value=0.86  Score=41.14  Aligned_cols=73  Identities=16%  Similarity=0.116  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +..+.+..+++.+.+...++.=...++++.+-..-++.|..|...|.-++..+.+++.+|+.||..|-+++-.
T Consensus        63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555556667777778888999999999999999999999999999999888754

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=93.57  E-value=0.17  Score=38.87  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ++++..|++-|-.|..+++.|+..|.+.+.|+.+|..-|++
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq   50 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ   50 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888999999999999999999999999999888875

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.27  E-value=0.51  Score=41.55  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.+++++.++..|+.++..++.++..+.+++..|+.++..|..++..+
T Consensus        82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555555444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.24  E-value=0.4  Score=39.17  Aligned_cols=47  Identities=28%  Similarity=0.409  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      |-++++|..+-..|..+|..++.....|..++.+|+.|...-.++|.
T Consensus        26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555544

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=93.13  E-value=0.11  Score=36.12  Aligned_cols=28  Identities=7%  Similarity=0.287  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ++..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            5778999999999999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.00  E-value=0.52  Score=48.09  Aligned_cols=52  Identities=21%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .+-++.+..++++.+.++.+++.++++++..+++++.++.|...|+.++...
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~  556 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK  556 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence            3444555667777777777777777777777777777777777777766553

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=92.91  E-value=0.17  Score=41.15  Aligned_cols=47  Identities=28%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +++++..++..|+.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus         7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l   53 (79)
T 3cvf_A            7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA   53 (79)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777776666666666654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=92.57  E-value=0.15  Score=35.30  Aligned_cols=27  Identities=4%  Similarity=0.244  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      +..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578999999999999999999999886

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=92.54  E-value=0.084  Score=51.05  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  343 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L  343 (421)
                      ..+.+|+.+++.|.+.|..|..++..+++++.+|+.|+..|
T Consensus        54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL   94 (251)
T 3m9b_A           54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   94 (251)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556777777777777666666666666444444444443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=92.47  E-value=0.46  Score=35.67  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL  343 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L  343 (421)
                      +.+|..++..|.+.|..|...+...+.++..|..|...|
T Consensus        11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A           11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677777777777777777666666555555554443

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=92.19  E-value=0.16  Score=35.36  Aligned_cols=28  Identities=7%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ++..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5678999999999999999999999875

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.10  E-value=0.81  Score=51.79  Aligned_cols=18  Identities=17%  Similarity=0.307  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 014660          334 EKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       334 ~~L~~EN~~LkekL~~lq  351 (421)
                      ..|+.||..|++++.++.
T Consensus      1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555555555555443

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=92.10  E-value=0.17  Score=35.28  Aligned_cols=28  Identities=7%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ++..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4578999999999999999999999875

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=92.07  E-value=0.68  Score=40.27  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      ..+|+.|+.|+..|..+|.....+.++|+.+|..|..+|..
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~  110 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence            34566677777777777777777777777777777777653

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=91.71  E-value=0.21  Score=34.50  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      +..||.+|+.|-.+|..|..|+.+|++
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            578999999999999999999998875

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=91.66  E-value=0.67  Score=34.79  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.++..|+.++..|..++.+|.+-+.+.+.|...|+++|..+
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667778888888888888888888888888888888888765

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=91.52  E-value=0.47  Score=38.16  Aligned_cols=50  Identities=16%  Similarity=0.114  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      +++++||.|+..++.-...|-..+.+-+.++.+|..+.+.|.++|+.++.
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46788999999888888889888988899899999999999998887663

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=91.52  E-value=0.21  Score=34.74  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSEN  332 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~  332 (421)
                      ++..||.+|+.|-.+|..|..++.+|++-
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46789999999999999999999998863

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=91.24  E-value=0.017  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014660          279 RELKRERRKQSNRESARRSRLRKQA  303 (421)
Q Consensus       279 rE~KR~RRk~sNRESARRSRlRKqa  303 (421)
                      ...|..||+-+||++|++||+||.+
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3457788999999999999999854

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=91.22  E-value=0.76  Score=36.78  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++..++..++.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~   47 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL   47 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666667777777777766666666666666666666554

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=90.97  E-value=1.1  Score=36.78  Aligned_cols=35  Identities=34%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .||..|..+|..|.+++..|+.+|..|++-....|
T Consensus        46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q   80 (83)
T 1uii_A           46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777788888877777788888877665443

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=90.84  E-value=2.1  Score=32.65  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      +..|+.+...|..+...|..++..|..|...|+..|
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555666666666665555555555555544

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=90.68  E-value=0.97  Score=38.46  Aligned_cols=46  Identities=17%  Similarity=0.117  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      ..+++++..+.+|++++....+++..++..+..|..+...|+.+|.
T Consensus        37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A           37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555566666666666666666666554

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=90.43  E-value=0.35  Score=45.04  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccccccCCCCcchhhhhhhccCCCCcc
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVD  385 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~~~~~~~~~p~~~e~lls~vd~~~~~~  385 (421)
                      -..-|..|..||..|..++.....++..|+.+.+.|++++...+  +....|-+.         -+++|++.+....-.+
T Consensus        18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~---------i~~DL~e~LTGl~V~~   88 (190)
T 4emc_A           18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE---------VIKDLYEYLCNVRVHK   88 (190)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHSEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh---------HHHHHHHHccCcEEEE
Confidence            33445555666666666666655555555556556655554322  222222222         4667777665544433


Q ss_pred             ccccccccccc
Q 014660          386 RNMEEGGHLFE  396 (421)
Q Consensus       386 ~~~~~~~~~~~  396 (421)
                      .-..+++.+|.
T Consensus        89 ~~ed~~~~~FD   99 (190)
T 4emc_A           89 SYEDDSGLWFD   99 (190)
T ss_dssp             CCCCSSCEEEE
T ss_pred             EEEcCCCeEEE
Confidence            33333434443

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=90.13  E-value=0.35  Score=32.78  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENS  333 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~  333 (421)
                      ++..|+.+|.+.+.||-+|.+++.+|..+|
T Consensus         2 evaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            356788899999999999988888887765

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.07  E-value=0.53  Score=35.35  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      ..|+.|+.||..|+.++..|.       .++..|+.+|.
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~-------~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIV-------EENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence            445555555555555555554       46666666654

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=89.71  E-value=0.59  Score=35.10  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEI  326 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el  326 (421)
                      ++|+.+++.|++++.+|+.++
T Consensus        29 ~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           29 AEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=89.66  E-value=3.4  Score=33.79  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660          290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG  353 (421)
Q Consensus       290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~  353 (421)
                      |=.||-.+-.|-|+   -+..++...+..|..+.++|.....++..|..|...|+.++.+++..
T Consensus        14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~   74 (81)
T 1wt6_A           14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE   74 (81)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45556555555443   34556677888999999999999999999999999999999987643

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=89.61  E-value=0.25  Score=47.72  Aligned_cols=44  Identities=25%  Similarity=0.253  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660          309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL  352 (421)
Q Consensus       309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql  352 (421)
                      +.++..|+.++..|..++..|.+.+..++.|+..||++|..++.
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77899999999999999999999999999999999999998863

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=89.16  E-value=0.57  Score=33.04  Aligned_cols=30  Identities=37%  Similarity=0.550  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          316 IDENASLKSEINQLSENSEKLRQENAALLE  345 (421)
Q Consensus       316 ~~EN~~L~~el~~L~e~~~~L~~EN~~Lke  345 (421)
                      -+||..|..+|..-.+++.+|+.||..|++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            368899999999999999999999998864

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=88.45  E-value=3.9  Score=33.92  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          320 ASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ..|..++..|..+.+.|..||..+..++..+
T Consensus        51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~   81 (90)
T 2wt7_B           51 HHLENEKTQLIQQVEQLKQEVSRLARERDAY   81 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555777777666554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.93  E-value=8.7  Score=30.42  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      .++.++.++...+..+..+..+|..|+.++..|+.+...+.++|..
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=87.64  E-value=2.8  Score=35.52  Aligned_cols=30  Identities=30%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      -..+.+|+.+|+.|+.||+.|+.+....++
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            467788888899888888888888777664

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=87.39  E-value=7  Score=33.74  Aligned_cols=46  Identities=17%  Similarity=0.131  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ...-+.++..|+.+|..|+.|...-+........       ||..|+.++..+
T Consensus        35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~-------e~e~Lr~e~~~l   80 (120)
T 3i00_A           35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAAD-------DCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            4455666677777777766666665555444444       555555555544

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=87.17  E-value=4  Score=30.20  Aligned_cols=48  Identities=25%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A           10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555566666666666666666666666666666666655554

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=87.07  E-value=3.4  Score=31.10  Aligned_cols=46  Identities=11%  Similarity=0.187  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      +.+++|..+|.+|..+...|..++..|+........|-.+--++|.
T Consensus         4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD   49 (52)
T 1jcd_A            4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3567777777777777777777777777766666666555555554

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=86.93  E-value=4.9  Score=33.05  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ||+|+.-+-=++.+.+.|+.--+.|       ..+|..-++++..|+.+...++.+|..|
T Consensus        25 rEaA~Ee~YfrqkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l   77 (84)
T 1gmj_A           25 REQAEEERYFRARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566655533333333333322222       3333333444444444555555555544

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=86.78  E-value=0.82  Score=31.81  Aligned_cols=28  Identities=7%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      ++..||.+|+.|-.++..|..|+.+|++
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~   29 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678999999999999999998888875

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=86.64  E-value=3.8  Score=32.38  Aligned_cols=29  Identities=28%  Similarity=0.274  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      .+|+.....|..||..|+.+|..|+.++.
T Consensus        39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           39 VTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444445555555555555544444

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.61  E-value=12  Score=30.83  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      .++.++..++.++..+..+|..|+.++..|+.+...+.++|
T Consensus        27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L   67 (101)
T 3u1c_A           27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL   67 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=86.55  E-value=2  Score=43.50  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .++++++|+++++.|++++..|..++..|.+++.+.+.+-+.|..+|+++
T Consensus         8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el   57 (403)
T 4etp_A            8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL   57 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45667777777777777777777777777777777776677777777664

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=86.52  E-value=1.9  Score=43.93  Aligned_cols=50  Identities=16%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+++++|++++++|++++..+..++..+.+++.+.+.+.+.|..+|.+++
T Consensus         9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~   58 (412)
T 3u06_A            9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR   58 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45677888888888888888888888888888777777777777777653

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=86.48  E-value=3.6  Score=32.70  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .-+.|...-..-...+.+.+.+...++.+...|..++..|...+..+.........+|....
T Consensus        14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666677788888888888888888888888888888888888888888877543

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.66  E-value=1.3  Score=35.98  Aligned_cols=18  Identities=22%  Similarity=0.322  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 014660          331 ENSEKLRQENAALLEKLK  348 (421)
Q Consensus       331 e~~~~L~~EN~~LkekL~  348 (421)
                      .+.+.|..|+..|+.+|.
T Consensus        37 ~rvdELt~E~e~l~~El~   54 (77)
T 2w83_C           37 AKVDELTCEKDVLQGELE   54 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            334444444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.47  E-value=9.9  Score=34.75  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      |+.+.-...+++ -|+=.--|+||+.  .+|...+..|+..+..|...+..|......|+.|+..|..+|..
T Consensus        12 ekQL~E~n~kLk-~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q   80 (168)
T 3o0z_A           12 QKQLEEANDLLR-TESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA   80 (168)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443444443 3444445566666  66777777777777777777777777777777777666666654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=85.45  E-value=4.8  Score=34.53  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          321 SLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .....+..|.....+|+.+...|+.+|.++
T Consensus        94 eeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           94 DEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444443

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=85.42  E-value=11  Score=29.12  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=35.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL  344 (421)
Q Consensus       286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk  344 (421)
                      -..+||+-|-.-=   +..+++|...+..-..+....+.+|..|+..+..|+.|...||
T Consensus        21 ia~knr~EaE~~y---~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           21 VAAKNLQEAEEWY---KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344655544322   2235667777777666777777778888877777777777665

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=85.31  E-value=16  Score=31.29  Aligned_cols=42  Identities=14%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ..|+.++..|+..+..|...|..|...+..|+...+..-.-|
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL   79 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL   79 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence            344444444555554554444444444444444443333333

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=85.20  E-value=3.2  Score=32.84  Aligned_cols=31  Identities=13%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          321 SLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .|..++..|..+...|+.+|..|+.+|..++
T Consensus        51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555556666666666778888888876553

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=84.90  E-value=3.2  Score=33.79  Aligned_cols=35  Identities=37%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .||..|..+|..+.+++..|+.||..|++-+...+
T Consensus        34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~   68 (79)
T 2zxx_A           34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ   68 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888888888776654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.79  E-value=9.1  Score=35.91  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN  340 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN  340 (421)
                      +++.|+.+++.++.++..|..++..+.++.+.+..+.
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l  127 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ  127 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555444444444433333

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=84.70  E-value=1.1  Score=35.54  Aligned_cols=31  Identities=16%  Similarity=0.137  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENS  333 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~  333 (421)
                      .|+..|+.++..|+.+...|+.++..|+.++
T Consensus        47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l   77 (83)
T 1nkp_B           47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555554444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.55  E-value=9.2  Score=38.22  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~  349 (421)
                      +|.+.+.++++....+.+++.|+++.++++.++..|..++.+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (487)
T 3oja_A          426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS  467 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence            333333344444444444444444444444444444444433

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=84.34  E-value=6.3  Score=32.32  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          279 RELKRERRKQSNRESARRSRL---RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       279 rE~KR~RRk~sNRESARRSRl---RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      --.||.|=.+.=|.|-...|.   --+.++++|+.+-..|+.+...|..|+..|+.-+.++-
T Consensus        16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p   77 (87)
T 1hjb_A           16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            334455555544444433333   34567888899999999999999999998887665544

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.29  E-value=0.57  Score=37.88  Aligned_cols=36  Identities=33%  Similarity=0.393  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660          318 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG  353 (421)
Q Consensus       318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~  353 (421)
                      |-..|+.+|..|.+++.+|+.||..||.-..--++.
T Consensus        16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~   51 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQLE   51 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            445677778888888888888999999876543333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=84.28  E-value=14  Score=31.98  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      .++.++..|+.+...|..++..+...+..+..+...|+.++
T Consensus       220 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (284)
T 1c1g_A          220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL  260 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444443333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.26  E-value=16  Score=30.06  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=9.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Q 014660          285 RRKQSNRESARRSRLRKQAEAEEL  308 (421)
Q Consensus       285 RRk~sNRESARRSRlRKqa~leeL  308 (421)
                      ....++|+....-....+++++.|
T Consensus        28 ~~lEke~~~l~~el~~le~E~~~L   51 (96)
T 3q8t_A           28 EDVEKNRKVVAENLEKVQAEAERL   51 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333444444333333333333333

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=84.21  E-value=4.5  Score=32.40  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQ  328 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~  328 (421)
                      |.+.+++|+.++.+++.++..|+.++..
T Consensus        38 kd~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           38 RDALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555444444444444433

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=84.17  E-value=7.8  Score=31.47  Aligned_cols=42  Identities=12%  Similarity=0.240  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      -+|..+++.|+.|...|+-.++.+.-++..|......+-..|
T Consensus        23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL   64 (83)
T 2xdj_A           23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555554444444444444443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.00  E-value=1.5  Score=44.66  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+|..++..|+++...|..+.+.++.+...+..|...|+++++.++
T Consensus        45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~   90 (428)
T 4b4t_K           45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ   90 (428)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555666666666666666666666666666677777777777665

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=83.66  E-value=4.4  Score=29.83  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +||.+|+.|+.-...|..++++|-.++..   -...||++|..++
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE   43 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE   43 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            57888888888888888888777665553   3467777776654

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=83.65  E-value=12  Score=32.06  Aligned_cols=62  Identities=21%  Similarity=0.225  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 014660          290 NRESARRSRLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENS-------EKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       290 NRESARRSRlRKqa~leeLE~rVe~L~~---EN~~L~~el~~L~e~~-------~~L~~EN~~LkekL~~lq  351 (421)
                      |=.+|.+.=..|+..|++|++++..++.   ....|+.++...+..+       +++-.|...|.++|..++
T Consensus        32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq  103 (110)
T 2v4h_A           32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence            3445666666677777777777776666   4455666555444333       445556666666666554

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=83.47  E-value=4.3  Score=32.59  Aligned_cols=46  Identities=17%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      .+-+.++..|+....---+-.++|..++-.|-.||..|.++|..++
T Consensus        28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~   73 (75)
T 3a7o_A           28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK   73 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence            3333444444444444444467788888888999999999998776

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=83.45  E-value=12  Score=31.95  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      -+.+.+.+++.|......|..+|..|.+++...+..|..|...-..+
T Consensus        63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl  109 (129)
T 2fxo_A           63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL  109 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666666666666666666666655555555555544443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=83.38  E-value=8.4  Score=35.73  Aligned_cols=15  Identities=20%  Similarity=0.463  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHHH
Q 014660          322 LKSEINQLSENSEKL  336 (421)
Q Consensus       322 L~~el~~L~e~~~~L  336 (421)
                      |+..|..|...+..|
T Consensus       107 l~~~ireLEq~NDdl  121 (189)
T 2v71_A          107 LHKYVRELEQANDDL  121 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHH
Confidence            333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=83.31  E-value=4.5  Score=36.50  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR  337 (421)
Q Consensus       305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~  337 (421)
                      ++.|..++..|+-++..|..++..|++++..|.
T Consensus        98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555555554444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.23  E-value=5.5  Score=33.51  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 014660          330 SENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       330 ~e~~~~L~~EN~~LkekL~~l  350 (421)
                      +.+...++..|..|+++|.+.
T Consensus        75 r~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           75 RKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            445566677777777777653

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.10  E-value=2.5  Score=44.77  Aligned_cols=17  Identities=12%  Similarity=0.136  Sum_probs=9.8

Q ss_pred             hhhhHHHHHHHHHHHhH
Q 014660          275 IQNERELKRERRKQSNR  291 (421)
Q Consensus       275 ~qdErE~KR~RRk~sNR  291 (421)
                      +.-|++++....+++|+
T Consensus        56 dkqErDltkrINELKnq   72 (562)
T 3ghg_A           56 DEVNQDFTNRINKLKNS   72 (562)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HhhcCcHHHHHHHHHHH
Confidence            44566666665555554

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=82.97  E-value=2  Score=34.38  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK  335 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~  335 (421)
                      |-+++...+.+++.|+.+..++..+|..|+.+|.+
T Consensus        31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555444444444443

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=82.93  E-value=5.2  Score=32.84  Aligned_cols=34  Identities=35%  Similarity=0.450  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          317 DENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      .||..|..+|..+.+++..|+.||..|++-....
T Consensus        38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~   71 (83)
T 1wlq_A           38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777777777777777777655543

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=82.88  E-value=2.2  Score=34.18  Aligned_cols=19  Identities=21%  Similarity=0.377  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014660          330 SENSEKLRQENAALLEKLK  348 (421)
Q Consensus       330 ~e~~~~L~~EN~~LkekL~  348 (421)
                      .++.+.|+.|+..|+.+|.
T Consensus        60 ~~e~~~L~~e~~~L~~~L~   78 (80)
T 1nlw_A           60 VHQIDQLQREQRHLKRQLE   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3333344445555555544

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=82.84  E-value=17  Score=29.31  Aligned_cols=52  Identities=19%  Similarity=0.309  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      +-.....+|+.+...|.++...|..++..+.+.|..|......|-.+|.+++
T Consensus        32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~   83 (89)
T 3bas_A           32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556788889999999999988899999999999999999999998875

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.82  E-value=5.4  Score=32.93  Aligned_cols=10  Identities=10%  Similarity=0.112  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 014660          337 RQENAALLEK  346 (421)
Q Consensus       337 ~~EN~~Lkek  346 (421)
                      ..|...|..+
T Consensus        73 ~dE~~Sl~~q   82 (96)
T 3q8t_A           73 DDELKSVENQ   82 (96)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=82.73  E-value=5.4  Score=32.29  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          319 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       319 N~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ...|..+...+..+...|+.+|..|+.+|..++
T Consensus        54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~   86 (88)
T 1nkp_A           54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344556666666666677778888888888765

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=82.20  E-value=6.3  Score=32.42  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          311 KVDSLIDENASLKSEINQLSENSE  334 (421)
Q Consensus       311 rVe~L~~EN~~L~~el~~L~e~~~  334 (421)
                      ++..++.++..+..++..|+.++.
T Consensus        31 ~~k~~e~~~~~~E~ei~sL~kKiq   54 (101)
T 3u59_A           31 DKKQAEDRCKQLEEEQQGLQKKLK   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333333333333333333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=82.14  E-value=20  Score=29.58  Aligned_cols=58  Identities=14%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~  348 (421)
                      .+.|..--..-+..+..++.+...++.+...|..++..|..++..+.......+.+|.
T Consensus        18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe   75 (101)
T 3u1c_A           18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL   75 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444455555555555555555555555555555544444444444443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.11  E-value=2.7  Score=30.52  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          302 QAEAEELSRKVDSLIDENASLKSEI  326 (421)
Q Consensus       302 qa~leeLE~rVe~L~~EN~~L~~el  326 (421)
                      +....+||.+|..|+.||+.||+-+
T Consensus        16 e~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           16 ENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            4456788899999999998888755

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=82.01  E-value=5.8  Score=30.44  Aligned_cols=19  Identities=21%  Similarity=0.279  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014660          331 ENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       331 e~~~~L~~EN~~LkekL~~  349 (421)
                      .+...|+.+|..|+.++..
T Consensus        37 ~~v~~L~~eN~~L~~ev~~   55 (63)
T 2dgc_A           37 DKVEELLSKNYHLENEVAR   55 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.60  E-value=18  Score=32.99  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=22.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI  326 (421)
Q Consensus       287 k~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el  326 (421)
                      ++.-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+
T Consensus        74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~  113 (168)
T 3o0z_A           74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL  113 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456666666666666666665555555544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.38  E-value=13  Score=37.20  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE  339 (421)
Q Consensus       297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E  339 (421)
                      -|.|.+++++....+.+.|++||..|+.++..+..+.......
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (487)
T 3oja_A          429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT  471 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence            3344455555555566666666666666555555544444333

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=81.24  E-value=12  Score=28.30  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEK  346 (421)
Q Consensus       312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek  346 (421)
                      +..|+.+...|..+...|..++..|+.|+..|+..
T Consensus        24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~   58 (62)
T 1jnm_A           24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQK   58 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444333

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=81.24  E-value=0.7  Score=43.99  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 014660          315 LIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       315 L~~EN~~L~~el~~L~e---~~~~L~~EN~~LkekL~~l  350 (421)
                      |.+||.+|++|+.+|+.   ++..|+.||.+||+.|...
T Consensus        24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~   62 (255)
T 2j5u_A           24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT   62 (255)
T ss_dssp             --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34444444444444443   3456788999999987643

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=81.07  E-value=2.7  Score=29.32  Aligned_cols=20  Identities=20%  Similarity=0.458  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 014660          329 LSENSEKLRQENAALLEKLK  348 (421)
Q Consensus       329 L~e~~~~L~~EN~~LkekL~  348 (421)
                      .++.++.|+.+|..|.+++.
T Consensus        12 ~qqDIddlkrQN~~Le~Qir   31 (34)
T 1a93_B           12 HQQDIDDLKRQNALLEQQVR   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHH
Confidence            33333333345555555544

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.89  E-value=11  Score=28.25  Aligned_cols=38  Identities=34%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660          310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL  347 (421)
Q Consensus       310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL  347 (421)
                      ..+..|+.+...|..+...|..++..|+.|+..|+..|
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34666666666677777777777777777766666655

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=80.85  E-value=21  Score=28.93  Aligned_cols=52  Identities=21%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ..|++++-|.+--+.|+.=-+.|..-|.+|.++...|......|+.+.+++.
T Consensus        22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888777888887788888888888888888888999998888765

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=80.61  E-value=6.8  Score=33.31  Aligned_cols=57  Identities=12%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccc
Q 014660          303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIV  359 (421)
Q Consensus       303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~  359 (421)
                      =+++-|..+++.++.....|+.++.....+++.+......|+.++..++  +.+-.++|
T Consensus        30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI   88 (103)
T 4h22_A           30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML   88 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999998875  44444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=80.46  E-value=8.2  Score=33.58  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660          318 ENASLKSEINQLSENSEKLRQENAALLEKLKSA  350 (421)
Q Consensus       318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l  350 (421)
                      ...+|+.||..|.+++..+..|..+||.+...+
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~  104 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL  104 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence            355555666666666666666666666555544

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=80.43  E-value=7.1  Score=32.06  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 014660          310 RKVDSLIDENASLKSEINQLSE  331 (421)
Q Consensus       310 ~rVe~L~~EN~~L~~el~~L~e  331 (421)
                      .+|..|+++|..|..++..++.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~   44 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKG   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3555666666666555555544

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=80.39  E-value=4.9  Score=32.30  Aligned_cols=49  Identities=22%  Similarity=0.325  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 014660          301 KQAEAEELSRKVDSLIDENASLKSEINQL------SENSEKLRQENAALLEKLKS  349 (421)
Q Consensus       301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L------~e~~~~L~~EN~~LkekL~~  349 (421)
                      -|.+++.|+.+++.|+.+...|..++..-      -.++..|..+...|..+|..
T Consensus        20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~   74 (89)
T 2lw1_A           20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ   74 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            34568889999999999988888887531      23455555566666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	0.002
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	0.004

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 19/86 (22%)

Query: 284 ERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENAS--------------LKSEINQ 328
           ++R   N  E  RR  ++       L   V SL  E AS              ++ + + 
Sbjct: 1   DKRAHHNALERKRRDHIKDSFH--SLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT 58

Query: 329 LSENSEKLRQENAALLEKLKSAQLGN 354
             ++ + L+++NA L ++++   LG 
Sbjct: 59  HQQDIDDLKRQNALLEQQVR--ALGG 82

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL---IDENASLKSEINQLSENS 333
           NE E K  R          +  +    ++   +  +  L         L+    +     
Sbjct: 6   NEME-KNRRAHLRLSLEKLKGLVPLGPDSSRHT-TLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 334 EKLRQENAALLEKLK 348
           ++L++E   L  +L+
Sbjct: 64  DQLQREQRHLKRQLE 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	94.14
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.29

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.14  E-value=0.01  Score=45.78  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014660          280 ELKRERRKQSNRESARRSRLRKQAEAEEL  308 (421)
Q Consensus       280 E~KR~RRk~sNRESARRSRlRKqa~leeL  308 (421)
                      -.+-.||+=+||.+||+||+||-...++|
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            34667899999999999999998876553

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.29  E-value=1.2  Score=33.67  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660          320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ  351 (421)
Q Consensus       320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq  351 (421)
                      ..|..++..|..+...|..++..|+.+|..++
T Consensus        55 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555555666666666667777777776554