Citrus Sinensis ID: 014671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Secondary Structure (PSIPRED)
ccccccccccHHccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccHHHHHccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHccEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHccccEEEEcccccccccccccccHHHHHHHccEEEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEccHHHcccEEEcccccccccccccccccccccEEEEEEccccccccccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEEcHHHHHHccccccccHHHHHHHHccEccccEEEccccccccHHHHHHHHHHccccEEEEccccccccccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEccccHHHcHHHHHHHHHHHHcccEEEEEEEccHHHcccccccccHHHHHHHHHHHcHHHHEEccccccccHHHHHHccccEEEEcccccccccccccccccHcHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mtmeyesnswiwdglyyyphfFGGLMLTAALLGVStsyfggigvfslphlwsdcfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDElvvgvvsdeeiiankgppvlsMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNehkidyiihgddpcllpdgtDAYALAKKvgrykqikrtegvsstDIVGRILSSmedtkacedhnnaslprdplraiqskdahlsqflptsrrivqfsnckgpgpnarVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIytdqivrgsyhpimhlHERSLSVLACRYvdeviigapweVTKDMITTFNICLVVHgtvsetntpltgqsdpyeVAKSMGIFqllespksittTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Flexible Loop (DISEMBL)
mtmeyesnSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCfhkkkcgkkkrVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEeiiankgppvlsmEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKvgrykqikrtegvsstdivGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLlespksittTSVAQRIIANHEAYMKRNakkavsekkyyeqkmfvsgd
Low Complexity Region (SEG)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHkkkcgkkkRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Disordered region (IsUnstruct)
*******NSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRIL**********************************FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN*********YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY************************
Disordered Region (DISOPRED)
*******NSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLP******************RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED*********ASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYY**KMFV***
Disordered Region (DISEMBL)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Disordered Region (DISPRO)
******SNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDT**********************DAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q55BZ4	360	Ethanolamine-phosphate cy	yes	no	0.814	0.95	0.493	3e-95
Q99447	389	Ethanolamine-phosphate cy	yes	no	0.807	0.871	0.442	7e-84
Q922E4	404	Ethanolamine-phosphate cy	yes	no	0.830	0.863	0.434	1e-82
Q5EA75	389	Ethanolamine-phosphate cy	yes	no	0.802	0.866	0.445	1e-82
O88637	404	Ethanolamine-phosphate cy	yes	no	0.819	0.851	0.437	2e-82
Q8SQW6	322	Probable ethanolamine-pho	yes	no	0.740	0.965	0.355	3e-53
Q9UTI6	365	Probable ethanolamine-pho	yes	no	0.583	0.671	0.353	4e-46
P33412	323	Ethanolamine-phosphate cy	yes	no	0.726	0.944	0.320	3e-36
O74975	362	Probable choline-phosphat	no	no	0.314	0.364	0.449	7e-25
P49587	370	Choline-phosphate cytidyl	N/A	no	0.330	0.375	0.374	4e-24

>sp|Q55BZ4|PCY2_DICDI Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1

 Score =  349 bits (895), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/361 (49%), Positives = 240/361 (66%), Gaps = 19/361 (5%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           KK +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   
Sbjct: 7   KKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKA 66

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V   KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G++
Sbjct: 67  VRACKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKF 122

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQ 235
           + IKRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS 
Sbjct: 123 RFIKRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSH 178

Query: 236 FLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI 295
           FLPT+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++
Sbjct: 179 FLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRV 238

Query: 296 V---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN 352
           V   +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG      
Sbjct: 239 VHEQKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVL 298

Query: 353 TPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 412
            P  G  DPY++ + +GI++ ++  + +T T + +RII N   Y  RN KK   E  + E
Sbjct: 299 GP-EGGVDPYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIE 357

Query: 413 Q 413
           Q
Sbjct: 358 Q 358

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 4

>sp|Q99447|PCY2_HUMAN Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1

 Score =  311 bits (797), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 236/368 (64%), Gaps = 29/368 (7%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 18  GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 77

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 78  KMVQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query: 181 RYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSK 229
           RY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P   +   
Sbjct: 134 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGV--- 190

Query: 230 DAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLL 287
               SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++
Sbjct: 191 ----SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYII 246

Query: 288 VGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 344
            G++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV 
Sbjct: 247 AGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVC 306

Query: 345 HGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 404
           HG       P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK 
Sbjct: 307 HGKTE--IIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKE 364

Query: 405 VSEKKYYE 412
             E  + E
Sbjct: 365 AKELAFLE 372

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q922E4|PCY2_MOUSE Ethanolamine-phosphate cytidylyltransferase OS=Mus musculus GN=Pcyt2 PE=1 SV=1

 Score =  307 bits (787), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/382 (43%), Positives = 234/382 (61%), Gaps = 33/382 (8%)

Query: 58  KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSME 117
           K  G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + E
Sbjct: 15  KGPGDQRIVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQE 74

Query: 118 ERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK 177
           ER  +V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K
Sbjct: 75  ERYKMVQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVK 130

Query: 178 KVGRYKQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA---- 225
           + GRY++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A    
Sbjct: 131 QAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTL 190

Query: 226 ----------IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEI 275
                      QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ 
Sbjct: 191 SSEVSSQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDF 250

Query: 276 LKKARQLGD--FLLVGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 330
           L++  +L    +++ G++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ V
Sbjct: 251 LQEVHKLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSV 310

Query: 331 TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII 390
           T +++  F + LV HG       P    SDPY+  K  GIF  ++S   +TT  + QRII
Sbjct: 311 TAELLNHFKVDLVCHGKTE--IVPDRDGSDPYQEPKRRGIFYQIDSGSDLTTDLIVQRII 368

Query: 391 ANHEAYMKRNAKKAVSEKKYYE 412
            N   Y  RN KK   E  + E
Sbjct: 369 KNRLEYEARNQKKEAKELAFLE 390

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q5EA75|PCY2_BOVIN Ethanolamine-phosphate cytidylyltransferase OS=Bos taurus GN=PCYT2 PE=2 SV=1

 Score =  307 bits (786), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 231/366 (63%), Gaps = 29/366 (7%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +
Sbjct: 20  RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V  +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ GRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 183 KQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDA 231
           ++ KRT+GVS+TD+VGR+L       SS E +    ++ ++    P  R+P   +     
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGV----- 190

Query: 232 HLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVG 289
             SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G
Sbjct: 191 --SQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAG 248

Query: 290 IYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 346
           ++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG
Sbjct: 249 LHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKVDLVCHG 308

Query: 347 TVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVS 406
                  P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN KK   
Sbjct: 309 KTE--VVPDKDGSDPYEEPKRRGIFCQVDSGNDLTTDLIVQRIIKNRLEYEARNQKKEAK 366

Query: 407 EKKYYE 412
           E  + E
Sbjct: 367 ELAFQE 372

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O88637|PCY2_RAT Ethanolamine-phosphate cytidylyltransferase OS=Rattus norvegicus GN=Pcyt2 PE=1 SV=1

 Score =  306 bits (785), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/377 (43%), Positives = 232/377 (61%), Gaps = 33/377 (8%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +
Sbjct: 20  QRTVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKM 79

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
           V  +KWVDEV+  APY  T + +++    H  D+ +HG+D  L  DG D Y   K+ GRY
Sbjct: 80  VQAIKWVDEVVPAAPYVTTLETLDK----HNCDFCVHGNDITLTVDGRDTYEEVKQAGRY 135

Query: 183 KQIKRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA-SLPRDPLRA--------- 225
           ++ KRT+GVS+TD+VGR+L       SS E +    ++ ++   P  P  A         
Sbjct: 136 RECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKPPHPTPAGDTLSSEVS 195

Query: 226 -----IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR 280
                 QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  
Sbjct: 196 SQCPGGQSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVH 255

Query: 281 QLGD--FLLVGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI 335
           +L    +++ G++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++
Sbjct: 256 KLAKRPYVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELL 315

Query: 336 TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEA 395
             F + LV HG       P    SDPYE  K  GIF  ++S   +TT  + QRII N   
Sbjct: 316 NHFKVDLVCHGKTE--IVPDRDGSDPYEEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLE 373

Query: 396 YMKRNAKKAVSEKKYYE 412
           Y  RN KK   E  + E
Sbjct: 374 YEARNQKKEAKELAFLE 390

Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine. Catalyzes the formation of CDP-ethanolamine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q8SQW6|ECT1_ENCCU Probable ethanolamine-phosphate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=MUQ1 PE=1 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 29/340 (8%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V+ DGCFD+ HYGHANALRQ+KALGD L+ GV S   I   KG PV+  EER  +V G 
Sbjct: 8   KVWADGCFDMFHYGHANALRQSKALGDYLIAGVHSSLSINQEKGLPVMEDEERYEVVEGC 67

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEV+ +AP+ +T+  M     E+ +  + HG+D  L   G D+Y   +++G +++++
Sbjct: 68  RYVDEVVRDAPF-VTQTSM---IKEYGVSIVAHGNDIVLDSSGQDSYCQVRRMGIFREVE 123

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RT G+S+T+IVGR++  +++  +  D  N    +D        D  LS F+ +       
Sbjct: 124 RTFGISTTEIVGRMM--LKNRGSWLDGENGESSKDS----GYHDRLLSLFMSS------- 170

Query: 247 SNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR--GSYHPIM 304
               G     +VV++DG FDLFHAGHV  L+ AR +GD+L+VGI+ D+  +     +P++
Sbjct: 171 ---MGREKRGKVVFMDGNFDLFHAGHVASLRIARGMGDYLIVGIHDDETTKEYTRSYPVL 227

Query: 305 HLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEV 364
              ER L+++ACRYVDE+++ +P+ V  + I    I +V     S+  +   G  D  E 
Sbjct: 228 STKERMLTLMACRYVDEIVV-SPYLVGSEFIKRHGIDVVAPSFDSKDLSRYDGIKDVVEH 286

Query: 365 AKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 404
           + +   F  L      +   +  RII+N++ Y  R  K+ 
Sbjct: 287 SYAENRFNYL------SAEHIVNRIISNYQDYANRQKKRT 320

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.05c PE=2 SV=1

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 158/280 (56%), Gaps = 35/280 (12%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R+++DGC D  HYGH+NA+ QAK LG+ LV+G+ SDEEI  NKGPPV+++EER    +  
Sbjct: 10  RLWLDGCMDFFHYGHSNAILQAKQLGETLVIGIHSDEEITLNKGPPVMTLEERCLSANTC 69

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           KWVDEV+ +APY    ++M R    +   Y++HGDD     +G D Y  AK   +Y ++K
Sbjct: 70  KWVDEVVPSAPYVFDLEWMRR----YGCQYVVHGDDISTDANGDDCYRFAKAADQYLEVK 125

Query: 187 RTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIVQF 246
           RTEGVS+T+++ R+LSS+             +   P+  + S+   L +F   S  +  F
Sbjct: 126 RTEGVSTTELLDRLLSSVP----------LEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175

Query: 247 S-----NCKGP------------GPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLL 287
           +     N + P             P   ++YIDG +DLF   H+  L+   ++  G  ++
Sbjct: 176 TDVFIYNTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHISALELCTRMFPGIPIM 235

Query: 288 VGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAP 327
            GI+ D+  +    P+++L ER L++L C+Y+  +++G P
Sbjct: 236 AGIFADE--KCFEKPMLNLLERILNLLQCKYISSILVGPP 273

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|P33412|ECT1_YEAST Ethanolamine-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECT1 PE=1 SV=1

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 168/349 (48%), Gaps = 44/349 (12%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKAL----GDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +V++DGCFD  H+GHA A+ QA+        +L  GV +DE+I  NKG PV++  ER   
Sbjct: 9   KVWIDGCFDFTHHGHAGAILQARRTVSKENGKLFCGVHTDEDIQHNKGTPVMNSSERYEH 68

Query: 123 VSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY 182
               +W  EV+  APY     +M++    ++  Y++HGDD  +  +G D Y L K++GR+
Sbjct: 69  TRSNRWCSEVVEAAPYVTDPNWMDK----YQCQYVVHGDDITIDANGEDCYKLVKEMGRF 124

Query: 183 KQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSK-DAHLSQFLPTSR 241
           K +KRT GVS+T+I+ RIL+         D+   +         Q     H   F     
Sbjct: 125 KVVKRTYGVSTTEIIHRILTKKSLPPTHPDYYPTTQELSFYSVAQDAVSKHCYVFQRDLD 184

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKAR---QLGDFLLVGIYTDQIVRG 298
            ++     K    +   VY+DG FDLFH G ++ L+K +        L+VGI T      
Sbjct: 185 NVLVNGGYKFDAEDC--VYVDGDFDLFHMGDIDQLRKLKMDLHPDKKLIVGITTSDYSS- 241

Query: 299 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVH-GTVSETNTPLTG 357
               IM + ER LSVL+C+YVD VII A        ++ +N C   H GT          
Sbjct: 242 ---TIMTMKERVLSVLSCKYVDAVIIDAD----ATSMSQYN-CEKYHIGTA--------- 284

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVS 406
                 V  + G F      + +T   + +R+ +  E Y+ RN KK +S
Sbjct: 285 ------VLTAAGKFS-----EYLTKELIVKRVESQREVYIARNQKKGMS 322

Ethanolamine-phosphate cytidylyltransferase which catalyzes the second step of phosphatidylethanolamine biosynthesis. Involved in the maintenance of plasma membrane and required for proper sporulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 4

>sp|O74975|PCY1_SCHPO Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 6/138 (4%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GH   L QAK +     L+VG+ +D+     KG  V++ +ER   +
Sbjct: 102 VRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERAEAL 161

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              KWVDEV+ NAP+ IT +F+     EHKID++ H D P    D  D Y   KKVG++ 
Sbjct: 162 RHCKWVDEVLENAPWVITPEFLE----EHKIDFVAHDDIPYASDDSGDIYLPVKKVGKFI 217

Query: 184 QIKRTEGVSSTDIVGRIL 201
             KRTEGVS++D++ RI+
Sbjct: 218 PTKRTEGVSTSDLITRII 235

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CTP PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 24/163 (14%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGPPVLSMEERLA 121
           K V +Y DG +D++H GH   L QAK L +   L+VGV SD E    KG  V ++EER  
Sbjct: 90  KNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTE 149

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP------------------ 163
            +  ++WVDE+I+  P+ +T +F+ +    +KIDY+ H D P                  
Sbjct: 150 TLKHIRWVDEIISPCPWVVTPEFLEK----YKIDYVAHDDIPYANNQKKKKKKKSKGKSF 205

Query: 164 CLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
               +  D YA  K+ G++K  +RTEGVS+TD++ RIL + ED
Sbjct: 206 SFDEENEDIYAWLKRAGKFKATQRTEGVSTTDLIVRILKNYED 248

Controls phosphatidylcholine synthesis.

Plasmodium falciparum (isolate K1 / Thailand) (taxid: 5839)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
225462533	431	PREDICTED: ethanolamine-phosphate cytidy	0.992	0.967	0.803	0.0
224144239	401	predicted protein [Populus trichocarpa]	0.935	0.980	0.842	0.0
449507378	423	PREDICTED: ethanolamine-phosphate cytidy	0.988	0.981	0.803	0.0
356513223	420	PREDICTED: ethanolamine-phosphate cytidy	0.983	0.983	0.774	0.0
356523761	420	PREDICTED: ethanolamine-phosphate cytidy	0.983	0.983	0.778	0.0
224090479	395	predicted protein [Populus trichocarpa]	0.928	0.987	0.789	0.0
357520661	418	Ethanolamine-phosphate cytidylyltransfer	0.983	0.988	0.770	0.0
217074798	418	unknown [Medicago truncatula] gi|3885155	0.983	0.988	0.768	0.0
357520663	431	Ethanolamine-phosphate cytidylyltransfer	0.983	0.958	0.745	0.0
255570558	377	conserved hypothetical protein [Ricinus	0.842	0.938	0.838	1e-173

>gi|225462533|ref|XP_002265606.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/432 (80%), Positives = 377/432 (87%), Gaps = 15/432 (3%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV-FSLPHLWSDC--FHKKK 59
           M++E+NSWIW+G+Y+YPH FGG+MLTAA+LG+STS+FGGI V  SL + W D   FHK+K
Sbjct: 1   MDFENNSWIWEGVYHYPHLFGGIMLTAAVLGLSTSFFGGISVPSSLAYFWPDLGIFHKRK 60

Query: 60  CGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119
            GKK R+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER
Sbjct: 61  HGKK-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEER 119

Query: 120 LALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV 179
           L LVSGLKWVDEVIANAPYAITEQFM+ LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 
Sbjct: 120 LVLVSGLKWVDEVIANAPYAITEQFMDTLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKA 179

Query: 180 GRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASL---PRDPL-----RAIQSKDA 231
           GRYKQIKRTEGVSSTDIVGRILS ++DTK  EDHN ++     RD          QSK  
Sbjct: 180 GRYKQIKRTEGVSSTDIVGRILSYIKDTKTHEDHNGSTSLHGERDNTNEAEGEKCQSKGL 239

Query: 232 HLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIY 291
           HLS FLPTSRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEILK ARQLGDFLLVGI+
Sbjct: 240 HLSHFLPTSRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILKNARQLGDFLLVGIH 299

Query: 292 TDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTV 348
           TDQ V   RG+++PIMHLHERSLSVLACRYVDEVIIGAPW+VTKDMITTFNI LVVHGTV
Sbjct: 300 TDQTVSEHRGAHYPIMHLHERSLSVLACRYVDEVIIGAPWDVTKDMITTFNISLVVHGTV 359

Query: 349 SETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEK 408
           +E+N+ L G  DPYEV KSMGIF +LESPK ITTTSVAQRIIANHEAYMKRN KKA SEK
Sbjct: 360 AESNSFLNGARDPYEVPKSMGIFHMLESPKDITTTSVAQRIIANHEAYMKRNVKKAESEK 419

Query: 409 KYYEQKMFVSGD 420
           KYY +K +VSG+
Sbjct: 420 KYYAEKKYVSGE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144239|ref|XP_002325231.1| predicted protein [Populus trichocarpa] gi|222866665|gb|EEF03796.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/400 (84%), Positives = 367/400 (91%), Gaps = 7/400 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDC--FHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G  SLP++WSD   FHKKKC
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGFSSLPYMWSDLGIFHKKKC 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -QKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIA+APYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIADAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNN-ASLPRDPLRAIQSKDAHLSQFLPT 239
           RYKQIKRTEGVSSTDIVGRILSS++DTKACE+H++ +SLP   L+  QS  AH+SQFLPT
Sbjct: 180 RYKQIKRTEGVSSTDIVGRILSSLKDTKACENHDDSSSLPGIALKGSQSNSAHISQFLPT 239

Query: 240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV--- 296
           SRRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIV   
Sbjct: 240 SRRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEH 299

Query: 297 RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLT 356
           RG  HPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM+TTFNI LVVHGTV+E N+ L 
Sbjct: 300 RGKGHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMVTTFNITLVVHGTVAENNSLLA 359

Query: 357 GQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 396
           G+ DPY V KSM IF++L+SPK+ITTTSVAQRI+ANHEAY
Sbjct: 360 GEPDPYAVPKSMRIFRMLDSPKTITTTSVAQRIVANHEAY 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507378|ref|XP_004163014.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Cucumis sativus]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/423 (80%), Positives = 366/423 (86%), Gaps = 8/423 (1%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           M+YESNSWIWDG+YYYPH FGGLMLTAALLG STSYF GIGV SLP  WSD   F K+K 
Sbjct: 4   MDYESNSWIWDGVYYYPHLFGGLMLTAALLGFSTSYFSGIGVPSLPFFWSDFGIFQKRKS 63

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMH+GHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERL
Sbjct: 64  -EKKRIRVYMDGCFDLMHFGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERL 122

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 123 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 182

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRILSSM D    EDHN  SL  D ++   S  A LS FLPTS
Sbjct: 183 RYKQIKRTEGVSSTDIVGRILSSMNDATNSEDHNATSLNGDSMKESPSHGA-LSHFLPTS 241

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---R 297
            RIVQFSN +GPGPNAR+VYIDGAFDLFHAGH+EILK ARQLGDFLLVGI+ DQ V   R
Sbjct: 242 HRIVQFSNGRGPGPNARIVYIDGAFDLFHAGHIEILKIARQLGDFLLVGIHNDQTVSNLR 301

Query: 298 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
           G   PIMHLHERSLSVL CRYVDEVIIGAPWE+T+DMITTFNI LVVHGTV+E N+   G
Sbjct: 302 GKQFPIMHLHERSLSVLGCRYVDEVIIGAPWEITRDMITTFNISLVVHGTVAENNS-FAG 360

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 417
            SDPY V KSMGIF+LLESPK+ITTTS+A+RI+ANH+A+ KRNAKK  SEKKYY +K ++
Sbjct: 361 DSDPYAVPKSMGIFKLLESPKTITTTSIAKRIVANHDAFKKRNAKKVESEKKYYAEKKYI 420

Query: 418 SGD 420
            GD
Sbjct: 421 CGD 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513223|ref|XP_003525313.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/425 (77%), Positives = 376/425 (88%), Gaps = 12/425 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSD--CFHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FHKK
Sbjct: 1   MDYENNSWIWEGVNYYPRVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHKK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K C+DHN   +   P    QS+ +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCDDHNGTEV--KPQEENQSQASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-- 296
           TSRRIVQFSN KGPGPN+R+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ V  
Sbjct: 238 TSRRIVQFSNGKGPGPNSRIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 297 -RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 355
            RG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTVSE +  L
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVSEKS--L 355

Query: 356 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM 415
             + DPYE+ KSMGIF+LLESPK ITT +VAQRI+ANHEAY+KRNAKK  SE++YYE+K 
Sbjct: 356 NCELDPYEIPKSMGIFRLLESPKDITTATVAQRIMANHEAYVKRNAKKTRSEQRYYEEKK 415

Query: 416 FVSGD 420
           +VSGD
Sbjct: 416 YVSGD 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523761|ref|XP_003530503.1| PREDICTED: ethanolamine-phosphate cytidylyltransferase-like [Glycine max]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/425 (77%), Positives = 374/425 (88%), Gaps = 12/425 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGV--FSLPHLWSDC--FHKK 58
           M+YE+NSWIW+G+ YYP  FGGLM+TAALLG+STSYFGGIGV   SLP  WS+   FH+K
Sbjct: 1   MDYENNSWIWEGVNYYPCVFGGLMVTAALLGLSTSYFGGIGVPYLSLPCSWSNLGIFHQK 60

Query: 59  KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEE 118
           K GK+ R+RVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSMEE
Sbjct: 61  KSGKR-RIRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMEE 119

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           RLALVSGLKWVDEVI +APYAITEQF+NRLF+E+KIDY+IHGDDPCLLPDGTDAYA AKK
Sbjct: 120 RLALVSGLKWVDEVITDAPYAITEQFLNRLFHEYKIDYVIHGDDPCLLPDGTDAYAAAKK 179

Query: 179 VGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
            GRYKQIKRTEGVSSTDIVGRILSS+ D K CEDHN   +   P    QSK +H++QFLP
Sbjct: 180 AGRYKQIKRTEGVSSTDIVGRILSSLRDQKNCEDHNGTEV--KPQEENQSKASHIAQFLP 237

Query: 239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-- 296
           TSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHVEILK+AR+LGDFLLVGI++D+ V  
Sbjct: 238 TSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSE 297

Query: 297 -RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 355
            RG+++PIMHLHERSLSVLACRYVDEVIIG+PWE+T DMITTFNI +VVHGTV+E    L
Sbjct: 298 HRGNHYPIMHLHERSLSVLACRYVDEVIIGSPWEITNDMITTFNISVVVHGTVAEKT--L 355

Query: 356 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKM 415
             + DPYEV KSMGIF LLESPK ITT +VAQRI+ANHEAY+KRNAKK  SE++YYE+K 
Sbjct: 356 NCELDPYEVPKSMGIFHLLESPKDITTATVAQRIMANHEAYVKRNAKKTRSEQRYYEEKK 415

Query: 416 FVSGD 420
           +VSGD
Sbjct: 416 YVSGD 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090479|ref|XP_002308992.1| predicted protein [Populus trichocarpa] gi|222854968|gb|EEE92515.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/423 (78%), Positives = 362/423 (85%), Gaps = 33/423 (7%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKC 60
           MEYES+S IWDG+YYYPH FGGLMLTAALLG+STSYFGG+G   LP++WSD   F+KKK 
Sbjct: 1   MEYESSSSIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGLGYSYLPYMWSDLGVFYKKKS 60

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
            +KKR+RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI+ANKGPPVLSMEERL
Sbjct: 61  -EKKRIRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIVANKGPPVLSMEERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVIANAPYAITE+FMN LFNEHKIDYIIHGDDPCLLPDGTDAYALAKK G
Sbjct: 120 ALVSGLKWVDEVIANAPYAITEKFMNSLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVG                            QS  + +SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGS---------------------------QSNSSRISQFLPTS 212

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---R 297
           RRIVQFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIV   R
Sbjct: 213 RRIVQFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHR 272

Query: 298 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
           G  HPIMHLHERSLSVLAC YVDEVIIGAPWEVT+DM+TTFNI LVVHGTV+E+N+ L G
Sbjct: 273 GKGHPIMHLHERSLSVLACSYVDEVIIGAPWEVTRDMVTTFNISLVVHGTVAESNSLLAG 332

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 417
           + DPY V KSMGIF +L+SPK+ITTTSVAQRI+ANHEAY+KRNAKKA SEKKYY +K+ V
Sbjct: 333 EPDPYAVPKSMGIFWMLDSPKNITTTSVAQRIVANHEAYLKRNAKKAESEKKYYAEKVHV 392

Query: 418 SGD 420
           SGD
Sbjct: 393 SGD 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520661|ref|XP_003630619.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524641|gb|AET05095.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/423 (77%), Positives = 372/423 (87%), Gaps = 10/423 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---R 297
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ V   R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 298 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P   
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP--S 355

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 417
           + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA SEK+YYE++ +V
Sbjct: 356 EKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKAKSEKRYYEERKYV 415

Query: 418 SGD 420
           SGD
Sbjct: 416 SGD 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074798|gb|ACJ85759.1| unknown [Medicago truncatula] gi|388515515|gb|AFK45819.1| unknown [Medicago truncatula]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/423 (76%), Positives = 371/423 (87%), Gaps = 10/423 (2%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RV VYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVHVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPTS 240
           RYKQIKRTEGVSSTDIVGRI+SS+++ K CED N   +   P    QSK +H+SQFLPTS
Sbjct: 180 RYKQIKRTEGVSSTDIVGRIMSSLKEQKICEDRNGTDV--KPQEECQSKVSHISQFLPTS 237

Query: 241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---R 297
           RRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLLVGI++D+ V   R
Sbjct: 238 RRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLLVGIHSDETVSENR 297

Query: 298 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
           G+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVVHGTV+E + P   
Sbjct: 298 GNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVVHGTVAEKSLP--S 355

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFV 417
           + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA SEK+YYE++ +V
Sbjct: 356 EKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKAKSEKRYYEERKYV 415

Query: 418 SGD 420
           SGD
Sbjct: 416 SGD 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520663|ref|XP_003630620.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula] gi|355524642|gb|AET05096.1| Ethanolamine-phosphate cytidylyltransferase [Medicago truncatula]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/436 (74%), Positives = 371/436 (85%), Gaps = 23/436 (5%)

Query: 3   MEYESNSWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPH--LWSDCFHKKKC 60
           M+YESNSWIW+G+YYYPH FGGLM+TAALLG+STSYFG IGV SLP    W +   KKK 
Sbjct: 1   MDYESNSWIWEGVYYYPHLFGGLMVTAALLGLSTSYFGVIGVPSLPLPCSWYN-LGKKKK 59

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
             K+RVRVYMDGCFDLMHYGHANALRQAKALGDELVVG+VSDEEI+ANKGPPVLSM+ERL
Sbjct: 60  TGKRRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGLVSDEEIVANKGPPVLSMDERL 119

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
           ALVSGLKWVDEVI +APYAITE F+NRLF+E+ IDY+IHGDDPCLLPDGTDAYA AKK G
Sbjct: 120 ALVSGLKWVDEVITDAPYAITETFLNRLFHEYNIDYVIHGDDPCLLPDGTDAYAAAKKAG 179

Query: 181 RYKQIKRTEGVSSTDIV-------------GRILSSMEDTKACEDHNNASLPRDPLRAIQ 227
           RYKQIKRTEGVSSTDI              GRI+SS+++ K CED N   +   P    Q
Sbjct: 180 RYKQIKRTEGVSSTDISSYDEIYTWTSLTHGRIMSSLKEQKICEDRNGTDV--KPQEECQ 237

Query: 228 SKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLL 287
           SK +H+SQFLPTSRRIVQFSN KGPGPNAR+VYIDGAFDLFHAGHV++LK+AR+LGDFLL
Sbjct: 238 SKVSHISQFLPTSRRIVQFSNGKGPGPNARIVYIDGAFDLFHAGHVQMLKRARELGDFLL 297

Query: 288 VGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVV 344
           VGI++D+ V   RG+++PIMHLHERSLSVLA RYVDEVIIGAP E+TKDMITTFNI LVV
Sbjct: 298 VGIHSDETVSENRGNHYPIMHLHERSLSVLASRYVDEVIIGAPLEITKDMITTFNISLVV 357

Query: 345 HGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA 404
           HGTV+E + P   + DPYEV KS+GIF+LLESPK ITTTSVAQRI+ANH+AY+KRNAKKA
Sbjct: 358 HGTVAEKSLP--SEKDPYEVPKSIGIFRLLESPKDITTTSVAQRIMANHDAYVKRNAKKA 415

Query: 405 VSEKKYYEQKMFVSGD 420
            SEK+YYE++ +VSGD
Sbjct: 416 KSEKRYYEERKYVSGD 431

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570558|ref|XP_002526236.1| conserved hypothetical protein [Ricinus communis] gi|223534430|gb|EEF36133.1| conserved hypothetical protein [Ricinus communis]

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 301/359 (83%), Positives = 322/359 (89%), Gaps = 5/359 (1%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL MEERLALVSG
Sbjct: 20  IRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLPMEERLALVSG 79

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK+ GRYKQI
Sbjct: 80  LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKRAGRYKQI 139

Query: 186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNA-SLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEGVSSTDIVGRIL +  D K  E H++  SLP D  +  Q    HLSQFLPTSRRIV
Sbjct: 140 KRTEGVSSTDIVGRILFA-NDAKVSECHDDKLSLPGDACKGNQCNSVHLSQFLPTSRRIV 198

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---RGSYH 301
           QFSN KGPGPNARVVYIDGAFDLFHAGHVEIL+ ARQLGDFLLVGI+TDQIV   RG ++
Sbjct: 199 QFSNGKGPGPNARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGIHTDQIVSEHRGEHY 258

Query: 302 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDP 361
           PIMHLHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N+ L G SDP
Sbjct: 259 PIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAECNSLLAGISDP 318

Query: 362 YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD 420
           Y V KSMGIF+ LESPK+I T+SVAQRI+ANHEAYMKRN+KKA SEKKYY +K++VSGD
Sbjct: 319 YAVPKSMGIFRTLESPKNIITSSVAQRIVANHEAYMKRNSKKAKSEKKYYAEKVYVSGD 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2064123	421	PECT1 "phosphorylethanolamine	0.845	0.843	0.697	3.7e-135
DICTYBASE|DDB_G0270298	360	pctA "cytidylyltransferase dom	0.807	0.941	0.491	3.3e-86
FB|FBgn0032482	393	Pect "Phosphoethanolamine cyti	0.8	0.854	0.451	3.2e-81
UNIPROTKB|F5H8B1	407	PCYT2 "Ethanolamine-phosphate	0.423	0.437	0.464	8.4e-79
RGD|619970	404	Pcyt2 "phosphate cytidylyltran	0.438	0.455	0.460	1.4e-78
MGI|MGI:1915921	404	Pcyt2 "phosphate cytidylyltran	0.438	0.455	0.455	1.7e-78
UNIPROTKB|Q99447	389	PCYT2 "Ethanolamine-phosphate	0.804	0.868	0.454	1.6e-77
UNIPROTKB|Q5EA75	389	PCYT2 "Ethanolamine-phosphate	0.804	0.868	0.456	9e-77
ZFIN|ZDB-GENE-041010-132	397	pcyt2 "phosphate cytidylyltran	0.790	0.836	0.451	1.9e-76
UNIPROTKB|F1PIT0	385	PCYT2 "Uncharacterized protein	0.809	0.883	0.443	2.1e-75

TAIR|locus:2064123 PECT1 "phosphorylethanolamine cytidylyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 256/367 (69%), Positives = 302/367 (82%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRVYMDGCFD+MHYGH NALRQA+ALGD+LVVGVVSDEEIIANKGPPV  + ER+ +V  
Sbjct:    55 VRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKA 114

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEVI++APYAITE FM +LF+E++IDYIIHGDDPC+LPDGTDAYALAKK GRYKQI
Sbjct:   115 VKWVDEVISDAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQI 174

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PL--RAIQSKDAHLSQF 236
             KRTEGVSSTDIVGR+L  + +    + H+ +SL R        P       S    +S F
Sbjct:   175 KRTEGVSSTDIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHF 234

Query:   237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV 296
             LPTSRRIVQFSN KGPGP+AR++YIDGAFDLFHAGHVEIL++AR+LGDFLLVGI+ DQ V
Sbjct:   235 LPTSRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTV 294

Query:   297 ---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 353
                RG++ PIM+LHERSLSVLACRYVDEVIIGAPWEV++D ITTF+I LVVHGTV+E++ 
Sbjct:   295 SAKRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESDD 354

Query:   354 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 413
                 + +PY V  SMGIFQ+L+SP  ITT+++ +RI+ANHEAY KRNAKK  SEKKYYEQ
Sbjct:   355 FRKEEDNPYSVPISMGIFQVLDSPLDITTSTIIRRIVANHEAYQKRNAKKEASEKKYYEQ 414

Query:   414 KMFVSGD 420
             K FVSGD
Sbjct:   415 KSFVSGD 421

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=TAS

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

DICTYBASE|DDB_G0270298 pctA "cytidylyltransferase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 176/358 (49%), Positives = 238/358 (66%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RVY+DGCFDLMH+GHANALRQA+ LGD LVVGV +DEEI  NKGPPV++ +ER   V  
Sbjct:    10 IRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPPVMNEQERYKAVRA 69

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
              KW DEV   APY +TE++++ L      D+ +HG+D  +  DG D Y   KK G+++ I
Sbjct:    70 CKWADEVAEGAPYTLTEEYLDSL----NCDFCVHGEDISVGADGKDVYEGIKKSGKFRFI 125

Query:   186 KRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAI-------QSKDAHLSQFLP 238
             KRTEGVS+T++VGR+L   +D       N +     PL  +       QS    LS FLP
Sbjct:   126 KRTEGVSTTELVGRMLLCTKDHL----QNVSGEQTSPLGGVNPNVLHKQSPYTSLSHFLP 181

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-- 296
             T+R+IVQFS  + P PN +++Y+DG FDLFH GH E LK+AR LGD+L+VG++ D++V  
Sbjct:   182 TTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQARALGDYLIVGVHDDRVVHE 241

Query:   297 -RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPL 355
              +GS  PIM+LHER LSVL+CRYVDEV+IGAP+ VTKDMI + +I +VVHG       P 
Sbjct:   242 QKGSNFPIMNLHERVLSVLSCRYVDEVVIGAPFSVTKDMIDSLHINVVVHGDDQVVLGP- 300

Query:   356 TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 413
              G  DPY++ + +GI++ ++  + +T T + +RII N   Y  RN KK   E  + EQ
Sbjct:   301 EGGVDPYKLPRELGIYKEVKHTEGLTATEIVKRIIDNRLQYEARNRKKEAKEINFIEQ 358

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA;ISS

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0032482 Pect "Phosphoethanolamine cytidylyltransferase" [Drosophila melanogaster (taxid:7227)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 168/372 (45%), Positives = 249/372 (66%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++H+GHAN+LRQAKALGD+++VG+ +DEEI  +KGPPV + EER+ +V G
Sbjct:    21 VRVWCDGCYDMVHFGHANSLRQAKALGDKVIVGIHTDEEITKHKGPPVFTEEERVKMVKG 80

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T   ++    ++  D+ +HGDD  +  +G D Y L K   RYK++
Sbjct:    81 IKWVDEVVLGAPYVTTLDVLD----QNNCDFCVHGDDITMTAEGVDTYHLVKSANRYKEV 136

Query:   186 KRTEGVSSTDIVGRIL---------SSME-DT--------KACEDHNNAS-LPRDPLRAI 226
             KRT GVS+TD+VGR+L          S E D         +  + H  +S + +D   A 
Sbjct:   137 KRTAGVSTTDLVGRMLLLTRNHFRQGSAEYDIEKEVSILKRQIKSHPGSSNMGQDS--AA 194

Query:   227 QSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFL 286
             +S     SQFLPT+++I+QFS+ K P P  ++VY+ GAFDLFH GH++ L+KA++LGD+L
Sbjct:   195 KSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFHVGHLDFLEKAKKLGDYL 254

Query:   287 LVGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLV 343
             +VG++TD +V   +GS +PIM+LHER LSVLAC++V+EV+IGAP+ VT++++  F I +V
Sbjct:   255 IVGLHTDPVVNSYKGSNYPIMNLHERVLSVLACKFVNEVVIGAPYCVTEELLEHFKIDVV 314

Query:   344 VHGTVSETNTPLT---GQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRN 400
              HG      TP+    G+ DPY V K+  IF+L++S   +TT  + +RII++   Y +RN
Sbjct:   315 CHG-----RTPIALENGKIDPYAVPKTRAIFELIDSGNEMTTERIVERIISHRLEYERRN 369

Query:   401 AKKAVSEKKYYE 412
               K   E + +E
Sbjct:   370 QAKEKKEIEAFE 381

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISS

GO:0042439 "ethanolamine-containing compound metabolic process" evidence=NAS

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F5H8B1 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 418 (152.2 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
 Identities = 86/185 (46%), Positives = 123/185 (66%)

Query:   233 LSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGI 290
             +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G+
Sbjct:   208 VSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGL 267

Query:   291 YTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 347
             + DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG 
Sbjct:   268 HFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGK 327

Query:   348 VSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSE 407
              +E      G SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK   E
Sbjct:   328 -TEIIPDRDG-SDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKEAKE 385

Query:   408 KKYYE 412
               + E
Sbjct:   386 LAFLE 390

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

RGD|619970 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 88/191 (46%), Positives = 121/191 (63%)

Query:   227 QSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD-- 284
             QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  +L    
Sbjct:   202 QSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVHKLAKRP 261

Query:   285 FLLVGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNIC 341
             +++ G++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + 
Sbjct:   262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKVD 321

Query:   342 LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNA 401
             LV HG  +E   P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN 
Sbjct:   322 LVCHGK-TEI-VPDRDGSDPYEEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLEYEARNQ 379

Query:   402 KKAVSEKKYYE 412
             KK   E  + E
Sbjct:   380 KKEAKELAFLE 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1915921 Pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Mus musculus (taxid:10090)]

 Score = 409 (149.0 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 87/191 (45%), Positives = 121/191 (63%)

Query:   227 QSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD-- 284
             QS    +SQFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L++  +L    
Sbjct:   202 QSPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLQEVHKLAKRP 261

Query:   285 FLLVGIYTDQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNIC 341
             +++ G++ DQ V   +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + 
Sbjct:   262 YVIAGLHFDQEVNRYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLNHFKVD 321

Query:   342 LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNA 401
             LV HG  +E   P    SDPY+  K  GIF  ++S   +TT  + QRII N   Y  RN 
Sbjct:   322 LVCHGK-TEI-VPDRDGSDPYQEPKRRGIFYQIDSGSDLTTDLIVQRIIKNRLEYEARNQ 379

Query:   402 KKAVSEKKYYE 412
             KK   E  + E
Sbjct:   380 KKEAKELAFLE 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q99447 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 163/359 (45%), Positives = 236/359 (65%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV 255

Query:   297 ---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 353
                +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGK-TEIIP 314

Query:   354 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 412
                G SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y  RN KK   E  + E
Sbjct:   315 DRDG-SDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEYEARNQKKEAKELAFLE 372

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;TAS

GO:0008654 "phospholipid biosynthetic process" evidence=TAS

GO:0005575 "cellular_component" evidence=ND

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

UNIPROTKB|Q5EA75 PCYT2 "Ethanolamine-phosphate cytidylyltransferase" [Bos taurus (taxid:9913)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 164/359 (45%), Positives = 232/359 (64%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDHLIVGVHTDEEIAKHKGPPVFTQEERYKMVQA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++ +N    D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK-YN---CDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             KRT+GVS+TD+VGR+L       SS E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 KRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVYGLAERPYVIAGLHFDQEV 255

Query:   297 ---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 353
                +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYSVTAELLDHFKVDLVCHGK-TEV-V 313

Query:   354 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYE 412
             P    SDPYE  K  GIF  ++S   +TT  + QRII N   Y  RN KK   E  + E
Sbjct:   314 PDKDGSDPYEEPKRRGIFCQVDSGNDLTTDLIVQRIIKNRLEYEARNQKKEAKELAFQE 372

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0004306 "ethanolamine-phosphate cytidylyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-132 pcyt2 "phosphate cytidylyltransferase 2, ethanolamine" [Danio rerio (taxid:7955)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 160/354 (45%), Positives = 228/354 (64%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             +RV+ DGC+D++HYGH+N LRQAKA+GD LVVGV +DEEI  +KGPPV +  ER  ++  
Sbjct:    31 IRVWCDGCYDMVHYGHSNQLRQAKAMGDYLVVGVHTDEEIAKHKGPPVFTQAERYKMIRA 90

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDE++  APY  T + +++ +N    D+ +HGDD  L  DG D Y   K+ GRY++ 
Sbjct:    91 IKWVDEIVEGAPYVTTLETLDK-YN---CDFCVHGDDITLTVDGKDTYDEVKRTGRYREC 146

Query:   186 KRTEGVSSTDIVGRIL------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLPT 239
             KRT+GVS+TD+VGR+L       S  D  A + H + +  + P     S    +SQFL T
Sbjct:   147 KRTQGVSTTDLVGRMLLLTKAHHSNIDNAAYQVHTD-NFGKGPKG--HSPWTGVSQFLQT 203

Query:   240 SRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV- 296
             S++I+QF++ K P P   ++Y+ GAFDLFH GHV+ L+      +  +++VG++ DQ V 
Sbjct:   204 SQKIIQFASGKEPQPGDTIIYVAGAFDLFHIGHVDFLETVHGQAEKPYVIVGLHFDQEVN 263

Query:   297 --RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT- 353
               +G  +PIM++HER LSVLACRYV EV+IGAP+ V KD++  F + LV HG   +TN  
Sbjct:   264 RYKGKNYPIMNIHERILSVLACRYVSEVVIGAPYAVEKDLLDHFKVDLVCHG---KTNVF 320

Query:   354 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSE 407
             P    +DPY   K  GIF++L+S  ++TT  + QRII N   +  RN KK   E
Sbjct:   321 PDADGTDPYAEPKKRGIFRILDSSNNLTTDDIVQRIIENRLQFEARNQKKEAKE 374

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PIT0 PCYT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 160/361 (44%), Positives = 230/361 (63%)

Query:    66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
             VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER  +V  
Sbjct:    23 VRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEISKHKGPPVFTQEERYKMVRA 82

Query:   126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
             +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K  GRY++ 
Sbjct:    83 IKWVDEVVPAAPYVTTLETLDK----YSCDFCVHGNDITLTVDGRDTYEEVKAAGRYREC 138

Query:   186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNASLPRDPLRAIQSKDAHLSQFLP 238
             +RT+GVS+TD+VGR+L       S  E +    ++ + S  + P    ++    +SQFL 
Sbjct:   139 RRTQGVSTTDLVGRMLLVTKAHHSGQEISSEYREYAD-SFGKCP--GGRNPWTGVSQFLQ 195

Query:   239 TSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV 296
             TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K   L +  +++ G++ DQ V
Sbjct:   196 TSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHGLAERPYVIAGLHFDQEV 255

Query:   297 ---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT 353
                +G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT +++  F + LV HG  +E   
Sbjct:   256 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLDHFKVDLVCHGK-TEI-V 313

Query:   354 PLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQ 413
             P    SDPY+  K  GIF  ++S   +TT  + QRII N   Y  RN KK   E  + E 
Sbjct:   314 PDKDGSDPYQEPKRRGIFCQIDSGSDLTTDLIVQRIIKNRLEYEARNQKKEAKELAFLES 373

Query:   414 K 414
             +
Sbjct:   374 R 374

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BZ4	PCY2_DICDI	2, ., 7, ., 7, ., 1, 4	0.4930	0.8142	0.95	yes	no
Q99447	PCY2_HUMAN	2, ., 7, ., 7, ., 1, 4	0.4429	0.8071	0.8714	yes	no
Q5EA75	PCY2_BOVIN	2, ., 7, ., 7, ., 1, 4	0.4453	0.8023	0.8663	yes	no
Q922E4	PCY2_MOUSE	2, ., 7, ., 7, ., 1, 4	0.4345	0.8309	0.8638	yes	no
O88637	PCY2_RAT	2, ., 7, ., 7, ., 1, 4	0.4376	0.8190	0.8514	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.921
3rd Layer	2.7.7.39	LOW CONFIDENCE prediction!
4th Layer	2.7.7.14	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00007159001	SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (431 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016870001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (377 aa)						•	•		0.922
	GSVIVG00021187001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (331 aa)						•	•		0.909
	GSVIVG00008974001	SubName- Full=Chromosome undetermined scaffold_213, whole genome shotgun sequence; (358 aa)						•			0.909
	GSVIVG00002042001	SubName- Full=Chromosome undetermined scaffold_125, whole genome shotgun sequence; (359 aa)						•			0.909
	GSVIVG00017822001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (499 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
PLN02406	418	PLN02406, PLN02406, ethanolamine-phosphate cytidyl	0.0
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	1e-152
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	7e-77
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	2e-75
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	1e-40
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	8e-38
cd02173	152	cd02173, ECT, CTP:phosphoethanolamine cytidylyltra	1e-34
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	3e-34
cd02174	150	cd02174, CCT, CTP:phosphocholine cytidylyltransfer	2e-33
PTZ00308	353	PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl	8e-25
COG0615	140	COG0615, TagD, Cytidylyltransferase [Cell envelope	1e-24
cd02170	136	cd02170, cytidylyltransferase, cytidylyltransferas	1e-22
PLN02413	294	PLN02413, PLN02413, choline-phosphate cytidylyltra	3e-21
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	8e-19
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	8e-19
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	8e-16
TIGR00125	66	TIGR00125, cyt_tran_rel, cytidyltransferase-like d	3e-15
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	8e-15
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	4e-14
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	4e-14
TIGR01518	125	TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c	4e-14
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	6e-14
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	8e-14
TIGR02199	144	TIGR02199, rfaE_dom_II, rfaE bifunctional protein,	6e-13
cd02171	129	cd02171, G3P_Cytidylyltransferase, glycerol-3-phos	6e-13
cd02172	144	cd02172, RfaE_N, N-terminal domain of RfaE	9e-13
pfam01467	148	pfam01467, CTP_transf_2, Cytidylyltransferase	2e-11
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	4e-10
COG2870	467	COG2870, RfaE, ADP-heptose synthase, bifunctional	5e-10
PRK11316	473	PRK11316, PRK11316, bifunctional heptose 7-phospha	4e-09
PRK00777	153	PRK00777, PRK00777, phosphopantetheine adenylyltra	4e-07
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	1e-05
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	1e-04
PRK01170	322	PRK01170, PRK01170, phosphopantetheine adenylyltra	1e-04
cd02156	105	cd02156, nt_trans, nucleotidyl transferase superfa	2e-04
cd02064	180	cd02064, FAD_synthetase_N, FAD synthetase, N-termi	2e-04
COG1019	158	COG1019, COG1019, Predicted nucleotidyltransferase	5e-04
cd02163	153	cd02163, PPAT, Phosphopantetheine adenylyltransfer	7e-04
TIGR01510	155	TIGR01510, coaD_prev_kdtB, pantetheine-phosphate a	7e-04
COG0669	159	COG0669, CoaD, Phosphopantetheine adenylyltransfer	0.002
COG0196	304	COG0196, RibF, FAD synthase [Coenzyme metabolism]	0.002
PRK00168	159	PRK00168, coaD, phosphopantetheine adenylyltransfe	0.003

>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase

 Score =  710 bits (1833), Expect = 0.0
 Identities = 295/422 (69%), Positives = 333/422 (78%), Gaps = 14/422 (3%)

Query: 9   SWIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRV 68
             I    Y      GGLML A++LG+S + FG     SLP+ W D    KK  KKK VRV
Sbjct: 1   MSISSAKYVASCLIGGLMLGASVLGLSLAGFG----SSLPYAWPDLGIFKKKKKKKPVRV 56

Query: 69  YMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW 128
           YMDGCFD+MHYGHANALRQA+ALGDELVVGVVSDEEIIANKGPPV  M ER+ +VSG+KW
Sbjct: 57  YMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKW 116

Query: 129 VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT 188
           VDEVI +APYAITE+FMN+LFNE+ IDYIIHGDDPCLLPDGTDAYALAKK GRYKQIKRT
Sbjct: 117 VDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRT 176

Query: 189 EGVSSTDIVGRILSSMEDTKACEDHNNASLPRD-------PLRAIQSKDAHLSQFLPTSR 241
           EGVSSTDIVGR+L  + +    + HN++SL R                   +S FLPTSR
Sbjct: 177 EGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSR 236

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV---RG 298
           RIVQFSN KGPGP+AR+VYIDGAFDLFHAGHVEIL+ AR LGDFLLVGI+TDQ V   RG
Sbjct: 237 RIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRG 296

Query: 299 SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQ 358
           ++ PIM+LHERSLSVLACRYVDEVIIGAPWEV+KDMITTFNI LVVHGTV+E N  L G+
Sbjct: 297 AHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGE 356

Query: 359 SDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVS 418
            DPY V KSMGIFQ+LESP  ITT+++ +RI+ANHEAY KRN KKA SEK+YYE K FVS
Sbjct: 357 DDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKRNEKKAESEKRYYESKSFVS 416

Query: 419 GD 420
           GD
Sbjct: 417 GD 418

Length = 418

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  434 bits (1119), Expect = e-152
 Identities = 171/353 (48%), Positives = 239/353 (67%), Gaps = 16/353 (4%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV++DGCFD++H+GHANALRQA+ALGDEL VG  SDEEI+ NKGPPV+  EER   +  
Sbjct: 12  IRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRA 71

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
            KWVDEV+   PY    + + RL    + D+++HGDD  +  +G ++Y      G++K +
Sbjct: 72  CKWVDEVVEGYPYTTRLEDLERL----ECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVV 127

Query: 186 KRTEGVSSTDIVGRILSSMEDTKAC-EDHNNASLPRDPLRAIQSKDAHLSQFLPTSRRIV 244
           KRTEG+S+TD+VGR+L        C + H   S+    L +        S  L TSR+IV
Sbjct: 128 KRTEGISTTDLVGRML-------LCTKSHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIV 180

Query: 245 QFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYH 301
           QFSN + P P  R+VY+DG+FDLFH GH+ +L+KAR+LGD+L+VG++ DQ+V    GS +
Sbjct: 181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNY 240

Query: 302 PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDP 361
           PIM+L+ER L VL+CRYVDEV+IGAP++VTK++I + +I +VV G  S+      G SDP
Sbjct: 241 PIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNE-EGGSDP 299

Query: 362 YEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK 414
           YEV K+MGIF+ ++S   +TT S+  R++ N  A++KR AKK   E K  E K
Sbjct: 300 YEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKSQEIK 352

Length = 353

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  235 bits (601), Expect = 7e-77
 Identities = 87/152 (57%), Positives = 110/152 (72%), Gaps = 4/152 (2%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYHPIMHLHERSL 311
             +VVY+DGAFDLFH GH+E L+KAR+LGD+L+VG++ DQ V    GS +PIM+LHER L
Sbjct: 1   GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVL 60

Query: 312 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF 371
           SVLACRYVDEV+IGAP+ +TK++I  F I +VVHG   ET   L G+ DPY V K MGIF
Sbjct: 61  SVLACRYVDEVVIGAPYVITKELIEHFKIDVVVHGKTEETPDSLDGE-DPYAVPKEMGIF 119

Query: 372 QLLESPKSITTTSVAQRIIANHEAYMKRNAKK 403
           + ++S   +TT  +  RII N  AY  RN KK
Sbjct: 120 KEIDSGSDLTTRDIVNRIIKNRLAYEARNKKK 151

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  231 bits (591), Expect = 2e-75
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 6/145 (4%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLA 121
           + VRVY+DGCFDL HYGHANALRQAK LG  D L+VGV SDEEI  +KGPPV++ EER  
Sbjct: 1   RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYE 60

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR 181
            V   KWVDEV+  APY  T +F+++    +K DY+ HGDD  L  DG D Y   K  GR
Sbjct: 61  AVRHCKWVDEVVEGAPYVTTPEFLDK----YKCDYVAHGDDIYLDADGEDCYQEVKDAGR 116

Query: 182 YKQIKRTEGVSSTDIVGRILSSMED 206
           +K++KRTEGVS+TD++GRIL    D
Sbjct: 117 FKEVKRTEGVSTTDLIGRILLDYRD 141

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score =  140 bits (356), Expect = 1e-40
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 13/144 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKGPPVLSMEERLALVS 124
            RV+ DG FD++H GH   LRQAK LGDEL+V V  DE +I   K  P++  E+R  ++ 
Sbjct: 2   KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLE 61

Query: 125 GLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ 184
            L++VDEVI  AP+ I  + +     E+K D ++ GDD     +    Y L  K G + +
Sbjct: 62  SLRYVDEVILGAPWDIKFEDI----EEYKPDIVVLGDDQ-KFDEDDLKYEL-VKRGLFVE 115

Query: 185 IKRTEGV------SSTDIVGRILS 202
           +KRTEGV      S++DI+ RIL 
Sbjct: 116 VKRTEGVSTCELISTSDIIKRILE 139

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score =  133 bits (337), Expect = 8e-38
 Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 7/138 (5%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RVY  G FD++H GH   L +AK LGD L+VGV  DE +   K  P+L  E+R  +V  L
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI- 185
           K+VDEVI   P++  +        E K D I+ GDD     D  + Y   KK G+  ++ 
Sbjct: 63  KYVDEVILGHPWSYFKP-----LEELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVP 117

Query: 186 -KRTEGVSSTDIVGRILS 202
            K+TEG+SS+DI+ RIL 
Sbjct: 118 RKKTEGISSSDIIKRILE 135

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT)

 Score =  125 bits (316), Expect = 1e-34
 Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 8/138 (5%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           VY+DG FDL H GH   L +A+ LGD L+VGV  D+ +   KG   P++++ ER+  V  
Sbjct: 5   VYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDP--CLLPDGTDAYALAKKVGRYK 183
            ++VDEV+  APY IT++ +       KID ++HG         DG D YA+ K++G +K
Sbjct: 65  CRYVDEVVIGAPYVITKELIEHF----KIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFK 120

Query: 184 QIKRTEGVSSTDIVGRIL 201
           +I     +++ DIV RI+
Sbjct: 121 EIDSGSDLTTRDIVNRII 138

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini. Length = 152

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score =  128 bits (324), Expect = 3e-34
 Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG +DL H+GHA +L QAK L     L+VG  +DE     KG  V++ +ER   +
Sbjct: 28  VRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESL 87

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGT--DAYALAKKVGR 181
              KWVDEVI +AP+ IT++F+++    H+IDY+ H   P     G   D Y   KK+G+
Sbjct: 88  RHCKWVDEVIPDAPWVITQEFLDK----HRIDYVAHDALPYADASGAGKDVYEFVKKIGK 143

Query: 182 YKQIKRTEGVSSTDIVGRIL 201
           +K+ KRT+G+S++DI+ RI+
Sbjct: 144 FKETKRTDGISTSDIIMRIV 163

Length = 294

>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase

 Score =  121 bits (307), Expect = 2e-33
 Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 6/149 (4%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQ-IVRGSYHPIMHLHERSLSVLA 315
           VY+DG FDLFH GH   L++A++LG  D+L+VG+++D+ I +    P+M   ER  +V  
Sbjct: 5   VYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRH 64

Query: 316 CRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE 375
           C++VDEV+ GAP+  T + +  +    V HG   +         D Y+  K  G F+ ++
Sbjct: 65  CKWVDEVVEGAPYVTTPEFLDKYKCDYVAHG---DDIYLDADGEDCYQEVKDAGRFKEVK 121

Query: 376 SPKSITTTSVAQRIIANHEAYMKRNAKKA 404
             + ++TT +  RI+ ++  Y +RN ++ 
Sbjct: 122 RTEGVSTTDLIGRILLDYRDYHRRNLQRG 150

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity. Length = 150

>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional

 Score =  104 bits (260), Expect = 8e-25
 Identities = 48/162 (29%), Positives = 88/162 (54%), Gaps = 4/162 (2%)

Query: 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-IVRGSYHPIMHLHERSLS 312
           P    V++DG FD+ H GH   L++AR LGD L VG ++D+ I+R    P+MH  ER  +
Sbjct: 9   PGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEA 68

Query: 313 VLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQ 372
           + AC++VDEV+ G P+    + +       VVHG   + +  L G+ + Y+     G F+
Sbjct: 69  LRACKWVDEVVEGYPYTTRLEDLERLECDFVVHG--DDISVDLNGR-NSYQEIIDAGKFK 125

Query: 373 LLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK 414
           +++  + I+TT +  R++   ++++ ++  +   E   +   
Sbjct: 126 VVKRTEGISTTDLVGRMLLCTKSHLLKSVDEVQLESSLFPYT 167

Length = 353

>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 19/143 (13%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYH--PIMHLHERSLSVLAC 316
           V+ DG FD+ H GH+E L++A++LGD L+V +  D+ V       PIM   +R+  + + 
Sbjct: 4   VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESL 63

Query: 317 RYVDEVIIGAPWEVTKDMITTFNICLVVHG---TVSETNTPLTGQSDPYEVAKSMGIF-- 371
           RYVDEVI+GAPW++  + I  +   +VV G      E           YE+ K  G+F  
Sbjct: 64  RYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQKFDE-------DDLKYELVK-RGLFVE 115

Query: 372 ----QLLESPKSITTTSVAQRII 390
               + + + + I+T+ + +RI+
Sbjct: 116 VKRTEGVSTCELISTSDIIKRIL 138

Length = 140

>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYH-PIMHLHERSLSVLAC 316
            VY  G FD+ H GH+  L++A++LGD+L+VG+  D+ V      PI+   +R+  V A 
Sbjct: 3   RVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62

Query: 317 RYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES 376
           +YVDEVI+G PW   K +       ++V G   +    +  + + YE  K  G    +  
Sbjct: 63  KYVDEVILGHPWSYFKPLEELKP-DVIVLG--DDQKNGVDEE-EVYEELKKRGKVIEVPR 118

Query: 377 PKS--ITTTSVAQRIIA 391
            K+  I+++ + +RI+ 
Sbjct: 119 KKTEGISSSDIIKRILE 135

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136

>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase

 Score = 93.1 bits (231), Expect = 3e-21
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 250 KGPGPNARV--VYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIV-RGSYHPIM 304
               P+ R   VY DG +DLFH GH   L++A++L    +LLVG   D++  +     +M
Sbjct: 19  PSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVM 78

Query: 305 HLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEV 364
              ER  S+  C++VDEVI  APW +T++ +    I  V H  +   +    G+ D YE 
Sbjct: 79  TEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGK-DVYEF 137

Query: 365 AKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEK 408
            K +G F+  +    I+T+ +  RI+ ++  Y+ RN  +  S K
Sbjct: 138 VKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRK 181

Length = 294

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 79.6 bits (197), Expect = 8e-19
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
            V   G FD  H GH + L +AK L DEL+VGV SD+ +   KG PV S+EERL ++  L
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 127 KWVDEV 132
           K+VDE 
Sbjct: 61  KYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 82.0 bits (203), Expect = 8e-19
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 27/153 (17%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
            + K++ V+ +GCFD++H GH + L+QA+ALGD LVVGV SD  +   KG   P+   E+
Sbjct: 8   ARGKKI-VFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEED 66

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           R  +++ L  VD V+              +F+E   + +I    P +L  G D Y +   
Sbjct: 67  RAEVLAALSSVDYVV--------------IFDEDTPEELIGELKPDILVKGGD-YKVETL 111

Query: 179 V---------GRYKQIKRTEGVSSTDIVGRILS 202
           V         G+   +   EG S+T I+ +IL 
Sbjct: 112 VGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 73.3 bits (180), Expect = 8e-16
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG----SYHPIMHLHERSL 311
            +VV   G FDL H GH+ +L++A+ LGD L+V + TD+   G    +  P      R+ 
Sbjct: 1   MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQ---RAE 57

Query: 312 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHG 346
            + + RYVD VI    WE   + I  +N+ + V G
Sbjct: 58  ILESIRYVDLVIPETNWEQKIEDIKKYNVDVFVMG 92

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGS-YHPIMHLHERSLSVLAC 316
           +V   G FD FH GH+++L++A++L D L+VG+ +DQ V      P+  L ER   + A 
Sbjct: 1   IVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 317 RYVDEV 322
           +YVDE 
Sbjct: 61  KYVDEN 66

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 75.8 bits (187), Expect = 8e-15
 Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 26/144 (18%)

Query: 68  VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALVSG 125
           V+ +GCFD++H GH   L QA+ALGD L+VGV SD  +   KG   P+ S E+R A+++ 
Sbjct: 335 VFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAA 394

Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----- 180
           L+ VD V+              +F+E   + +I    P +L  G D Y + K VG     
Sbjct: 395 LESVDLVV--------------IFDEDTPEELIEAVKPDILVKGGD-YKIEKIVGADIVE 439

Query: 181 ----RYKQIKRTEGVSSTDIVGRI 200
                   I   EG S+T I+ +I
Sbjct: 440 AYGGEVLLIPFEEGKSTTKIIEKI 463

Length = 467

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 73.3 bits (181), Expect = 4e-14
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 67  RVYM-DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLALV 123
           ++ M +GCFD++H GH + L  A+ LGD L+V V SD  +   KG   PV  +E+R+A++
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 124 SGLKWVDEVIA 134
           + L+ VD V+ 
Sbjct: 401 AALEAVDWVVP 411

Length = 473

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACR 317
           V   G FDL H GH+ +L++A+QLGD+L+V + TD+          H +E    +L   R
Sbjct: 1   VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIR 60

Query: 318 YVDEVIIGAPWEVTKDMITTFNICLVVHG 346
           YVD VI    WE  K  I  FNI + V G
Sbjct: 61  YVDLVIPEKSWEQKKQDIIDFNIDVFVMG 89

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H+GH N L +AK LGD L+V + +DE  +  +     S E R  ++  +++VD 
Sbjct: 5   GTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDL 64

Query: 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGV 191
           VI    +   +Q +     +  ID  + GDD     +G   +   +   +   + RTEGV
Sbjct: 65  VIPEKSWEQKKQDI----IDFNIDVFVMGDD----WEGKFDFLKDECPLKVVYLPRTEGV 116

Query: 192 SSTDI 196
           S+T I
Sbjct: 117 STTKI 121

This model describes glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 125

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 68.6 bits (168), Expect = 6e-14
 Identities = 40/150 (26%), Positives = 50/150 (33%), Gaps = 25/150 (16%)

Query: 71  DGCFDLMHYGHANALRQAKALGDEL-VVGVVSDEEIIANKGPPVLSMEERLALVSGLKWV 129
            G FD +H GH   L QAK L D   +VGV SDE         + S EERL ++     V
Sbjct: 3   GGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES-PHKDTKNLFSAEERLEMLELALEV 61

Query: 130 DEVIANAP------YAITEQFMNRLFN----------EHKIDYIIHGDDPCLLPDGTDA- 172
           D  +          Y I                    E +I  +    D  L        
Sbjct: 62  DPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREE 121

Query: 173 ---YALAKKVGRYKQIKRTEGVSSTDIVGR 199
              Y L K V           +SST+I  R
Sbjct: 122 LDKYPLGKIVIPDLPYND---ISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FDL+H GH   L+ A++LGD LVV + SD  +    G P+   + R  +++ L +VD 
Sbjct: 11  GVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDY 70

Query: 132 V-IANAPYAITEQFMNRL---FNEHKIDYIIHGDD 162
           V + + P A   + ++ L         DY    +D
Sbjct: 71  VVLFDNPTA--LEIIDALQPNIYVKGGDYENPEND 103

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 7/73 (9%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYHPIMHLHERS--L 311
           ++V+ +G FD+ HAGHV  L++AR LGD L+VG+ +D  V+   G   PI    +R+  L
Sbjct: 12  KIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVL 71

Query: 312 SVLACRYVDEVII 324
           + L+   VD V+I
Sbjct: 72  AALSS--VDYVVI 82

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 144

>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K V  Y  G FDL+H GH N L +AKALGD+L+V V +DE         V+  E+R  ++
Sbjct: 2   KVVITY--GTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEIL 59

Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
             +++VD VI   P    EQ +  +   + +D  + GD      D    +   K+     
Sbjct: 60  ESIRYVDLVI---PETNWEQKIEDIKK-YNVDVFVMGD------DWEGKFDFLKEYCEVV 109

Query: 184 QIKRTEGVSSTDI 196
            + RT+G+SST +
Sbjct: 110 YLPRTKGISSTQL 122

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase. Length = 129

>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-IVRGSYHPIMHLHERSLSV 313
              VV   G FDL H GHV  L+ AR LGD L+V + +D+ + +G   PI     R+  +
Sbjct: 3   GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVL 62

Query: 314 LACRYVDEVII 324
            A  +VD V++
Sbjct: 63  AALGFVDYVVL 73

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose . Length = 144

>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 260 YIDGAFDLFHAGHVEILKKARQLGDFL-LVGIYTDQIVRGSYHPIMHLHERSLSVLACRY 318
              G FD  H GH+ +L++A++L D   +VG+ +D+        +    ER   +     
Sbjct: 1   LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNLFSAEERLEMLELALE 60

Query: 319 VDE-------------VIIGAP-------WEVTKDMITTFNICLVVHGTVSETNTPLTGQ 358
           VD               IIGA        W    +++  F I +V         T     
Sbjct: 61  VDPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVF--L 118

Query: 359 SDPYEVAKSMGIFQLLESPKSITTTSVAQR 388
            +  +      I         I++T + +R
Sbjct: 119 REELDKYPLGKIVIPDLPYNDISSTEIRER 148

This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +H GH   LR+A  LG  + +G+ SDE   + K   V   E RL  +   K++  
Sbjct: 8   GTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNL--KKFLKA 65

Query: 132 VIANAPYAITE 142
           V  +  Y I +
Sbjct: 66  VEYDREYEIVK 76

Length = 153

>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 7/73 (9%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYHPIMHLHERS--L 311
           +VV+ +G FD+ HAGHV  L +AR LGD L+VG+ +D  V+   G   PI    +R+  L
Sbjct: 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVL 392

Query: 312 SVLACRYVDEVII 324
           + L    VD V+I
Sbjct: 393 AALES--VDLVVI 403

Length = 467

>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 7/72 (9%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYHPIMHLHERS--L 311
           ++V  +G FD+ HAGHV  L  AR+LGD L+V + +D  V+   G   P+  L +R   L
Sbjct: 341 KIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVL 400

Query: 312 SVLACRYVDEVI 323
           + L    VD V+
Sbjct: 401 AALEA--VDWVV 410

Length = 473

>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSY--HPIMHLHERSLSVLAC 316
           V + G FD  H GH  +L+KA +LG  + +G+ +D+  + SY  H +     R  ++   
Sbjct: 4   VAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAK-SYKKHKVRPYEVRLKNLK-- 60

Query: 317 RYVDEVIIGAPWEVTK 332
           +++  V     +E+ K
Sbjct: 61  KFLKAVEYDREYEIVK 76

Length = 153

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 62  KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLA 121
           K K ++V + G FD +H GH   L  A  +GD + +G+ SDE     K   +   E RL 
Sbjct: 2   KIKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLR 61

Query: 122 LVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC 164
            +                    F+  +  ++  + I+  DDP 
Sbjct: 62  NLR------------------NFLESIKADY--EEIVPIDDPY 84

Length = 158

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPV 113
              + G F  +H GH   L++A   GDE+V+G+ SDE +  NK  P+
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYPI 48

Length = 322

>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR 297
           +  + G F   H GH  +LKKA + GD +++G+ +D+ VR
Sbjct: 2   ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVR 41

Length = 322

>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPP-----VLSMEERLALVSGL 126
           G    +H GHA  + +AK + D+ VV +  +  +   + P        S+EE +++  G 
Sbjct: 6   GEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDISVC-GE 64

Query: 127 KWVD 130
            +  
Sbjct: 65  DFQQ 68

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain. Length = 105

>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS-----DEEIIANKGPPVL-SMEERLALV 123
           G FD +H GH   ++  K +  E  L   V++      E  + +K PP L ++EE+L L+
Sbjct: 6   GNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELL 65

Query: 124 SGLKWVDEVIA----NAPYAIT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
             L  VD ++         +++ E+F+  L  +    +++ G D       +    L K+
Sbjct: 66  ESLG-VDYLLVLPFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKE 124

Query: 179 VGRYKQIKRT---------EGVSSTDI 196
           +G+    + T         E VSST I
Sbjct: 125 LGKKYGFEVTVVPPVTLDGERVSSTRI 151

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation. Length = 180

>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSY-HPIMHLHER 309
             V + G FD  H GH ++L+ A ++GD + +G+ +D++ +      I     R
Sbjct: 6   MKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVR 59

Length = 158

>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L      + E
Sbjct: 6   GSFDPITNGHLDIIERASKLFDEVIVAVAVN----PSK-KPLFSLEERVEL------IRE 54

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHG 160
              + P    + F   L +   +H  + I+ G
Sbjct: 55  ATKHLPNVEVDGFDGLLVDFARKHGANVIVRG 86

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli. Length = 153

>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A AL DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 6   GSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SKK-PLFSLEERVELI 52

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 155

>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
           G FD +  GH + +++A AL DE++V V     I  +K  P+ S+EER+ L+       E
Sbjct: 9   GSFDPITNGHLDIIKRASALFDEVIVAVA----INPSKK-PLFSLEERVELIR------E 57

Query: 132 VIANAPYAITEQFMNRLFN---EHKIDYIIHGDDPCLLPDGTD 171
              + P      F   L +   +     ++ G     L   +D
Sbjct: 58  ATKHLPNVEVVGFSGLLVDYAKKLGATVLVRG-----LRAVSD 95

Length = 159

>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 24/147 (16%)

Query: 72  GCFDLMHYGHANALRQAKALGDE--LVVGVVS----DEEIIANKGPPVLSM--EERLALV 123
           G FD +H GH   L QA    ++  L V V++      E++    PP       E++ L+
Sbjct: 22  GNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLL 81

Query: 124 SGLKWVDEVIA---NAPYA-IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK 178
           +G   VD ++    +  +A ++ E+F+  L  +  + +I+ G D            L ++
Sbjct: 82  AGYG-VDALVVLDFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRE 140

Query: 179 VGRYKQIKRTE---------GVSSTDI 196
           +G  K  + T           +SST I
Sbjct: 141 LG-QKGFEVTIVPKINEEGIRISSTAI 166

Length = 304

>gnl|CDD|234674 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + + +A  L DE++V V  +     +K  P+ S+EER+ L+
Sbjct: 8   GSFDPITNGHLDIIERASRLFDEVIVAVAIN----PSKK-PLFSLEERVELI 54

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	100.0
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	100.0
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	100.0
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	100.0
PLN02413	294	choline-phosphate cytidylyltransferase	100.0
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	100.0
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.97
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.97
cd02174	150	CCT CTP:phosphocholine cytidylyltransferase. CTP:p	99.97
KOG2803	358	consensus Choline phosphate cytidylyltransferase/P	99.97
PLN02413	294	choline-phosphate cytidylyltransferase	99.97
COG0615	140	TagD Cytidylyltransferase [Cell envelope biogenesi	99.96
PLN02406	418	ethanolamine-phosphate cytidylyltransferase	99.96
cd02173	152	ECT CTP:phosphoethanolamine cytidylyltransferase (	99.96
KOG2804	348	consensus Phosphorylcholine transferase/cholinepho	99.95
PTZ00308	353	ethanolamine-phosphate cytidylyltransferase; Provi	99.95
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.95
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.95
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.93
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.93
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.92
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.92
cd02172	144	RfaE_N N-terminal domain of RfaE. RfaE is a protei	99.91
TIGR02199	144	rfaE_dom_II rfaE bifunctional protein, domain II.	99.91
cd02170	136	cytidylyltransferase cytidylyltransferase. The cyt	99.9
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.89
TIGR01518	125	g3p_cytidyltrns glycerol-3-phosphate cytidylyltran	99.88
cd02171	129	G3P_Cytidylyltransferase glycerol-3-phosphate cyti	99.87
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.86
PRK11316	473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.85
PRK07143	279	hypothetical protein; Provisional	99.85
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.83
COG2870	467	RfaE ADP-heptose synthase, bifunctional sugar kina	99.81
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	99.8
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	99.79
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	99.75
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.74
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.71
PRK00777	153	phosphopantetheine adenylyltransferase; Provisiona	99.68
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.64
PRK00168	159	coaD phosphopantetheine adenylyltransferase; Provi	99.58
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.58
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.56
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.56
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	99.55
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.55
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.52
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	99.52
cd02163	153	PPAT Phosphopantetheine adenylyltransferase. Phosp	99.52
PLN02388	177	phosphopantetheine adenylyltransferase	99.51
cd02039	143	cytidylyltransferase_like Cytidylyltransferase-lik	99.49
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.48
PRK01170	322	phosphopantetheine adenylyltransferase/unknown dom	99.48
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.46
PF01467	157	CTP_transf_2: Cytidylyltransferase; InterPro: IPR0	99.46
TIGR01527	165	arch_NMN_Atrans nicotinamide-nucleotide adenylyltr	99.46
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.45
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	99.45
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	99.45
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.45
TIGR00125	66	cyt_tran_rel cytidyltransferase-related domain. Pr	99.44
cd02064	180	FAD_synthetase_N FAD synthetase, N-terminal domain	99.44
TIGR01510	155	coaD_prev_kdtB pantetheine-phosphate adenylyltrans	99.42
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	99.41
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	99.39
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.39
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	99.35
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	99.35
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	99.33
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.3
cd02166	163	NMNAT_Archaea Nicotinamide/nicotinate mononucleoti	99.3
PRK13964	140	coaD phosphopantetheine adenylyltransferase; Provi	99.29
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	99.26
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.26
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	99.26
COG1019	158	Predicted nucleotidyltransferase [General function	99.22
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	99.2
cd02164	143	PPAT_CoAS phosphopantetheine adenylyltransferase d	99.15
COG0669	159	CoaD Phosphopantetheine adenylyltransferase [Coenz	99.09
cd02168	181	NMNAT_Nudix Nicotinamide/nicotinate mononucleotide	99.09
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.08
PRK07143	279	hypothetical protein; Provisional	99.07
PRK08099	399	bifunctional DNA-binding transcriptional repressor	99.03
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	98.98
PLN02388	177	phosphopantetheine adenylyltransferase	98.97
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.97
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	98.97
PRK13670	388	hypothetical protein; Provisional	98.96
PRK01153	174	nicotinamide-nucleotide adenylyltransferase; Provi	98.94
cd02167	158	NMNAT_NadR Nicotinamide/nicotinate mononucleotide	98.9
PRK00071	203	nadD nicotinic acid mononucleotide adenylyltransfe	98.83
PRK08887	174	nicotinic acid mononucleotide adenylyltransferase;	98.83
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	98.83
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.83
cd02165	192	NMNAT Nicotinamide/nicotinate mononucleotide adeny	98.82
COG1019	158	Predicted nucleotidyltransferase [General function	98.79
PRK13671	298	hypothetical protein; Provisional	98.76
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.75
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	98.73
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.65
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.63
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	98.61
TIGR00482	193	nicotinate (nicotinamide) nucleotide adenylyltrans	98.61
cd02169	297	Citrate_lyase_ligase Citrate lyase ligase. Citrate	98.56
PRK13671	298	hypothetical protein; Provisional	98.53
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	98.52
PRK07152	342	nadD putative nicotinate-nucleotide adenylyltransf	98.51
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.51
smart00764	182	Citrate_ly_lig Citrate lyase ligase C-terminal dom	98.46
COG1057	197	NadD Nicotinic acid mononucleotide adenylyltransfe	98.43
PRK13793	196	nicotinamide-nucleotide adenylyltransferase; Provi	98.43
TIGR00124	332	cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP	98.42
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.42
PRK06973	243	nicotinic acid mononucleotide adenylyltransferase;	98.28
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	98.2
cd09286	225	NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti	98.17
COG1056	172	NadR Nicotinamide mononucleotide adenylyltransfera	98.16
KOG3351	293	consensus Predicted nucleotidyltransferase [Genera	98.06
PF06574	157	FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof	98.05
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	98.04
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	97.99
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	97.83
PLN02660	284	pantoate--beta-alanine ligase	97.75
PRK13670	388	hypothetical protein; Provisional	97.71
COG3053	352	CitC Citrate lyase synthetase [Energy production a	97.62
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	97.52
COG1323	358	Predicted nucleotidyltransferase [General function	97.47
PLN02945	236	nicotinamide-nucleotide adenylyltransferase/nicoti	97.37
COG1323	358	Predicted nucleotidyltransferase [General function	97.21
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	97.1
PF05636	388	HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr	96.92
PF08218	182	Citrate_ly_lig: Citrate lyase ligase C-terminal do	96.75
TIGR00018	282	panC pantoate--beta-alanine ligase. This family is	95.92
COG3053	352	CitC Citrate lyase synthetase [Energy production a	95.87
PRK00380	281	panC pantoate--beta-alanine ligase; Reviewed	95.75
PLN02660	284	pantoate--beta-alanine ligase	95.6
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	94.96
PRK04149	391	sat sulfate adenylyltransferase; Reviewed	94.78
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	94.78
cd00560	277	PanC Pantoate-beta-alanine ligase. PanC Pantoate-b	94.66
cd00517	353	ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also	94.47
COG2046	397	MET3 ATP sulfurylase (sulfate adenylyltransferase)	94.39
PF01747	215	ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002	94.29
KOG3199	234	consensus Nicotinamide mononucleotide adenylyl tra	93.99
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	93.76
PF02569	280	Pantoate_ligase: Pantoate-beta-alanine ligase; Int	92.65
COG0414	285	PanC Panthothenate synthetase [Coenzyme metabolism	91.5
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	90.87
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	90.85
KOG3042	283	consensus Panthothenate synthetase [Coenzyme trans	89.97
PLN02341	470	pfkB-type carbohydrate kinase family protein	83.91
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	81.49

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=100.00  E-value=6.5e-93  Score=720.12  Aligned_cols=405  Identities=73%  Similarity=1.129  Sum_probs=366.4

Q ss_pred             ccccccccccccchhhhHHHHhhhhccccccCcccccCcccchH--HHhhcccCCCCceEEEEecccCcCCHHHHHHHHH
Q 014671           10 WIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSD--CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQ   87 (420)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~q   87 (420)
                      +.+.+.++++|.+||+|+++|+||+++++++    ..+|++|++  .+  ++.++.+..|||++||||++|.||+++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~rV~~~G~FDllH~GH~~~L~q   75 (418)
T PLN02406          2 SISSAKYVASCLIGGLMLGASVLGLSLAGFG----SSLPYAWPDLGIF--KKKKKKKPVRVYMDGCFDMMHYGHANALRQ   75 (418)
T ss_pred             CccccceeeehhhHHHHHHHHHHHHHhcccc----ccccccchhhhhh--ccccCCCceEEEEcCeeCCCCHHHHHHHHH
Confidence            3456788899999999999999999998886    236777887  33  444556678999999999999999999999


Q ss_pred             HHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHHHHHHHhhcCccEEEEcCCCCCCC
Q 014671           88 AKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLP  167 (420)
Q Consensus        88 A~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~  167 (420)
                      |+++||+|+|||++|+.+..+|++|+++++||++++++|+|||+|++++||.++.+|+.+++++++||++|||+||+..+
T Consensus        76 Ak~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~  155 (418)
T PLN02406         76 ARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLP  155 (418)
T ss_pred             HHHhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccC
Confidence            99999999999999999988899999999999999999999999999999999999999898999999999999999888


Q ss_pred             CCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccccccccccccCCCCCCCchh-------hhcCcccccccccccc
Q 014671          168 DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLR-------AIQSKDAHLSQFLPTS  240 (420)
Q Consensus       168 ~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  240 (420)
                      ++.+.|...+..|+++.++|++++|||+|++||+.++++|+....+...++.++|+.       .+.+..+.+++|++++
T Consensus       156 ~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  235 (418)
T PLN02406        156 DGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTS  235 (418)
T ss_pred             CchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcccccccH
Confidence            999999999999999999999999999999999999999875433322333333331       1223456778999999


Q ss_pred             cchhccccCCCCCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CCC-CCCCHHHHHHhhhhcc
Q 014671          241 RRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SYH-PIMHLHERSLSVLACR  317 (420)
Q Consensus       241 ~~i~~~~~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~~-pi~~~~ER~~~v~~~~  317 (420)
                      ++|.||++|+.|.+++++||++|+||+||.||+++|++|+++||+|||||++|+++++  |++ |+|+++||+++|++|+
T Consensus       236 ~~i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack  315 (418)
T PLN02406        236 RRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACR  315 (418)
T ss_pred             HHHHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999987  544 9999999999999999


Q ss_pred             ccceEEEcCCCCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHH
Q 014671          318 YVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYM  397 (420)
Q Consensus       318 ~VD~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~  397 (420)
                      |||+||+++||..+.++|++++||++|||++|....+...+.|+|.+++.+|++..++++.++|||+||+||++||++|+
T Consensus       316 ~VD~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~  395 (418)
T PLN02406        316 YVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQ  395 (418)
T ss_pred             cccEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999988655555567899999999999999999999999999999999999999


Q ss_pred             HHHhhhhHhHHHHHHhcccccCC
Q 014671          398 KRNAKKAVSEKKYYEQKMFVSGD  420 (420)
Q Consensus       398 ~r~~~k~~~e~~~~~~~~~~~~~  420 (420)
                      +||++|+++|..+|++|.||+||
T Consensus       396 ~Rn~~K~~ke~~~~~~~~~~~~~  418 (418)
T PLN02406        396 KRNEKKAESEKRYYESKSFVSGD  418 (418)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCC
Confidence            99999999999999999999997

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-88  Score=648.74  Aligned_cols=346  Identities=52%  Similarity=0.856  Sum_probs=317.3

Q ss_pred             CCCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCcccc
Q 014671           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (420)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~  141 (420)
                      +.++.|||++||||++|+||.++|+||+++||.|+||||+|++|..+||+|+|+++||++|+++|||||+|++++||.++
T Consensus         5 ~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt   84 (358)
T KOG2803|consen    5 KNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTT   84 (358)
T ss_pred             CCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeecc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccccccccccccCCCCCCC
Q 014671          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRD  221 (420)
Q Consensus       142 ~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~~~~~~~~~~~~~~~~~  221 (420)
                      .+++    ++|+||++|||+|.+..++|.|+|.+.|++|++++++||+|||||+|+.||+..+++++ +++...+..+..
T Consensus        85 ~~~m----d~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~~  159 (358)
T KOG2803|consen   85 LEWM----DKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQRELS  159 (358)
T ss_pred             HHHH----HHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhhh
Confidence            9988    47999999999999999999999999999999999999999999999999999999888 332222222222


Q ss_pred             ch----hhhcCcccccccccccccchhccccCCCCCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcccc
Q 014671          222 PL----RAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR  297 (420)
Q Consensus       222 ~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~  297 (420)
                      ++    +...++|+++++|+|++++|+||++|+.|.|+.++||++|.|||||.||+++|++|+++||+|||||++|+.++
T Consensus       160 ~~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vn  239 (358)
T KOG2803|consen  160 FSSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVN  239 (358)
T ss_pred             hccccCCcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcchh
Confidence            32    33457899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C--CCC-CCCCHHHHHHhhhhccccceEEEcCCCCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEe
Q 014671          298 G--SYH-PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLL  374 (420)
Q Consensus       298 ~--~~~-pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~  374 (420)
                      +  |.+ ||||++||.++|++|||||+|++++||..+.++++.++++.+++|.....    ....+||..++..|++.++
T Consensus       240 eykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~----~~~~~py~~~k~~~i~~~~  315 (358)
T KOG2803|consen  240 EYKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGTIPDF----RDPSDPYADPKRRGIFEEA  315 (358)
T ss_pred             hhccCCCccchHHHHHHHHhhhcccceEEEcCchhccHHHHHhcCceEEEEeccccc----cCccCccccchhhcchhhc
Confidence            8  665 99999999999999999999999999999999999999999999983222    2345699999999999999


Q ss_pred             CCCCCCCHHHHHHHHHhchHhHHHHHhhhhHhHHHHHHhccc
Q 014671          375 ESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMF  416 (420)
Q Consensus       375 ~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k~~~e~~~~~~~~~  416 (420)
                      .+..++||+.|++||+.||++|++||+||+.+|+.+++++..
T Consensus       316 ~~~~dltte~Iv~RIis~r~~Ye~Rn~kk~~k~~~~~~~~~~  357 (358)
T KOG2803|consen  316 DSGSDLTTELIVERIISNRQAYEARNQKKEGKEAPLNEAQHR  357 (358)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhcc
Confidence            999999999999999999999999999999999999998643

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=100.00  E-value=2.5e-78  Score=608.09  Aligned_cols=343  Identities=48%  Similarity=0.813  Sum_probs=310.2

Q ss_pred             CCCCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccc
Q 014671           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (420)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~  140 (420)
                      ++.++++||++||||++|.||+++|+||+++|+.|+||+++|+.+.+.|++|+++++||++++++|+|||+|+++.||..
T Consensus         7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~   86 (353)
T PTZ00308          7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT   86 (353)
T ss_pred             CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence            34456899999999999999999999999999999999999999988888899999999999999999999999889977


Q ss_pred             cHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccccccccccccCCCCCC
Q 014671          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR  220 (420)
Q Consensus       141 ~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~~~~~~~~~~~~~~~~  220 (420)
                      +.+|+    ++++||+||||+||++|.+|.++|+.+++.|+++.++|++++|||+|++||+.++++++.... ....+  
T Consensus        87 ~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~~~~~--  159 (353)
T PTZ00308         87 RLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-DEVQL--  159 (353)
T ss_pred             hHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-ccccc--
Confidence            77776    578999999999999999999999999999999999999999999999999999998764221 11111  


Q ss_pred             CchhhhcCcccccccccccccchhccccCCCCCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--
Q 014671          221 DPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--  298 (420)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--  298 (420)
                        + ...+.++..++|++++++|.+|+.+..|.+++++||++|+||+||.||+++|++|+++||+|||||++|++++.  
T Consensus       160 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~K  236 (353)
T PTZ00308        160 --E-SSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQK  236 (353)
T ss_pred             --c-cccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhc
Confidence              1 12234556788999999999999998888889999999999999999999999999999999999999999987  


Q ss_pred             CCC-CCCCHHHHHHhhhhccccceEEEcCCCCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCC
Q 014671          299 SYH-PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESP  377 (420)
Q Consensus       299 ~~~-pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~  377 (420)
                      |++ |+|+++||++++++|++||+|++++|+..+.+++++++||++|||.||.... .+++.|+|++++.+|++..++++
T Consensus       237 g~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~-~~~~~d~y~~~k~~G~~~~i~~~  315 (353)
T PTZ00308        237 GSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVN-EEGGSDPYEVPKAMGIFKEVDSG  315 (353)
T ss_pred             CCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCcccc-CCCcccchHHHhcCceEEEeCCC
Confidence            434 9999999999999999999999999999999999999999999999986432 24467899999999999999999


Q ss_pred             CCCCHHHHHHHHHhchHhHHHHHhhhhHhHHHHHHhc
Q 014671          378 KSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQK  414 (420)
Q Consensus       378 ~~~Stt~Ii~RI~~~~~~~~~r~~~k~~~e~~~~~~~  414 (420)
                      +++|||+||+||++||++|++||++|.++|..+|+.+
T Consensus       316 ~~~sTt~ii~RI~~~r~~~~~r~~~k~~~e~~~~~~~  352 (353)
T PTZ00308        316 CDLTTDSIVDRVVKNRLAFLKRQAKKRAKEIKSQEIK  352 (353)
T ss_pred             CCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999875

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=100.00  E-value=1.4e-37  Score=279.36  Aligned_cols=149  Identities=56%  Similarity=0.932  Sum_probs=136.8

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CCC-CCCCHHHHHHhhhhccccceEEEcCCCCch
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SYH-PIMHLHERSLSVLACRYVDEVIIGAPWEVT  331 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~~-pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~  331 (420)
                      ++++||++|+||+||.||+++|++|+++||+|||||++|++++.  +++ |+|+++||+++|++|++||+|++++|+.++
T Consensus         1 ~~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~   80 (152)
T cd02173           1 GDKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVIT   80 (152)
T ss_pred             CCeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcch
Confidence            36899999999999999999999999999999999999999976  444 999999999999999999999999999888


Q ss_pred             HHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhh
Q 014671          332 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKA  404 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k~  404 (420)
                      .+++++++||++++|.+|..++. ..+.++|.+++.+|++.++++++++|||+|++||+++|+.|++||++|.
T Consensus        81 ~~~~~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~  152 (152)
T cd02173          81 KELIEHFKIDVVVHGKTEETPDS-LDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE  152 (152)
T ss_pred             HHHHHHhCCCEEEECCCCccccc-cCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence            99999999999999999865421 2346789999999999999999999999999999999999999999984

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>PLN02413 choline-phosphate cytidylyltransferase

Probab=100.00  E-value=5.2e-37  Score=294.96  Aligned_cols=153  Identities=32%  Similarity=0.573  Sum_probs=138.2

Q ss_pred             CCCCCeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCC
Q 014671          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPW  328 (420)
Q Consensus       252 ~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~  328 (420)
                      +.....+||++|+||+||+||+++|++||++|  |+|||||++|+++++ +++|+|+++||+++|++|+|||+||+++||
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~  102 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPW  102 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCc
Confidence            44556899999999999999999999999996  799999999999988 556999999999999999999999999999


Q ss_pred             CchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhhH
Q 014671          329 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAV  405 (420)
Q Consensus       329 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k~~  405 (420)
                      .++.++|++++||+++||++...+ ....+.|+|..++.+|++.+++++.++|||+||+||+++|+.|++||.+|..
T Consensus       103 ~~t~efI~~~kpDiVvhGd~~~~d-~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~rg~  178 (294)
T PLN02413        103 VITQEFLDKHRIDYVAHDALPYAD-ASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGY  178 (294)
T ss_pred             cccHHHHHHhCCCEEEECCCCCcc-ccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999753322 1124578999999999999999999999999999999999999999999843

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=100.00  E-value=4.7e-36  Score=268.80  Aligned_cols=145  Identities=34%  Similarity=0.634  Sum_probs=134.4

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  332 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~  332 (420)
                      .++||++|+||+||.||+++|++|+++|  |+|||||++|+++++ ++.|+|+++||+++|++|+|||+|++++|+..+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~   81 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP   81 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence            3679999999999999999999999999  999999999999987 4349999999999999999999999999998889


Q ss_pred             HHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhh
Q 014671          333 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKK  403 (420)
Q Consensus       333 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k  403 (420)
                      +++++++||++++|+||..+   ..+.++|+.++.+|++.++++++++|||+|++||+++++.|++||..+
T Consensus        82 ~~i~~~~~d~vv~G~d~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~  149 (150)
T cd02174          82 EFLDKYKCDYVAHGDDIYLD---ADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQR  149 (150)
T ss_pred             HHHHHhCCCEEEECCCCCCC---CCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhcc
Confidence            99999999999999999764   234678888999999999999999999999999999999999999864

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.97  E-value=3.4e-32  Score=237.87  Aligned_cols=130  Identities=35%  Similarity=0.648  Sum_probs=117.9

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +.|+++||||+||+||+++|++||++||+|+|.+..|+++.+  |+.|||+++||++++.+|||||+|++++||+.+.++
T Consensus         2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~   81 (140)
T COG0615           2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED   81 (140)
T ss_pred             cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence            349999999999999999999999999999999999999886  555999999999999999999999999999998899


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCC------CCHHHHHHHHHh
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKS------ITTTSVAQRIIA  391 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~------~Stt~Ii~RI~~  391 (420)
                      +++++||++++|+||..+    .+.+.+...+ +|.+.++.++++      +||+.|++||..
T Consensus        82 i~~~k~Div~lG~D~~~d----~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          82 IEEYKPDIVVLGDDQKFD----EDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             HHHhCCCEEEECCCCcCC----hHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            999999999999999843    4566777777 999999999988      888999998864

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.97  E-value=2.7e-32  Score=261.05  Aligned_cols=145  Identities=32%  Similarity=0.635  Sum_probs=136.7

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  332 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~  332 (420)
                      --.||.+|.|||||.||.+.|+|||+++  -+|||||++|+...+ ++..+|+..||++.|..|||||+||.++||.++.
T Consensus        63 PVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~lt~  142 (348)
T KOG2804|consen   63 PVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWTLTP  142 (348)
T ss_pred             ceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCccccH
Confidence            3579999999999999999999999987  699999999999988 7789999999999999999999999999999999


Q ss_pred             HHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhh
Q 014671          333 DMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKK  403 (420)
Q Consensus       333 ~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k  403 (420)
                      +||+++++|+|+|.+.....   ...+|.|+..|.+|.|+...++.|+||++||-||+..++.|.+||..+
T Consensus       143 EFL~~HKIDfVAHDdIPY~s---~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~R  210 (348)
T KOG2804|consen  143 EFLEKHKIDFVAHDDIPYVS---AGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLAR  210 (348)
T ss_pred             HHHHhcccceeeccCccccC---CCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcc
Confidence            99999999999999886654   356799999999999999999999999999999999999999999887

>cd02174 CCT CTP:phosphocholine cytidylyltransferase

Probab=99.97  E-value=1.2e-30  Score=233.82  Aligned_cols=139  Identities=60%  Similarity=0.997  Sum_probs=128.1

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~  142 (420)
                      ++|||+.|+||++|.||+++|++|+++|  |.|+|||++|+.+..+|++|+++++||++++++|+|||+|++..|+..+.
T Consensus         2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~   81 (150)
T cd02174           2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP   81 (150)
T ss_pred             CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence            5689999999999999999999999999  99999999999988888889999999999999999999999998888777


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccccc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDT  207 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~~~  207 (420)
                      +|+    ++++||++++|+||..+..+.+.|+.+++.|+++.+++++++|||.|++||+.....+
T Consensus        82 ~~i----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~  142 (150)
T cd02174          82 EFL----DKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDY  142 (150)
T ss_pred             HHH----HHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHH
Confidence            776    4689999999999988777778899999999999999999999999999999875543

CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.

>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=257.65  Aligned_cols=136  Identities=30%  Similarity=0.499  Sum_probs=126.4

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI  335 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i  335 (420)
                      -.||++||||++|.||.+.|+|||++||+|||||++|+.+.. +..|+|+++||++++.+|||||+||.++|+.++.+++
T Consensus         9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~~m   88 (358)
T KOG2803|consen    9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLEWM   88 (358)
T ss_pred             eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccHHHH
Confidence            359999999999999999999999999999999999999988 5559999999999999999999999999999999999


Q ss_pred             hhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHh
Q 014671          336 TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEA  395 (420)
Q Consensus       336 ~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~  395 (420)
                      +++++|++|||+|...   ++.+.|.|...|.+|++.+++++.|+|||+|+.|++.-...
T Consensus        89 d~y~cd~vvHGdDit~---~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~  145 (358)
T KOG2803|consen   89 DKYGCDYVVHGDDITL---DADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRN  145 (358)
T ss_pred             HHhCCeEEEeCCccee---cCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccC
Confidence            9999999999998544   36789999999999999999999999999999998764433

>PLN02413 choline-phosphate cytidylyltransferase

Probab=99.97  E-value=1.1e-29  Score=244.48  Aligned_cols=141  Identities=43%  Similarity=0.767  Sum_probs=127.6

Q ss_pred             CCCCceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCc
Q 014671           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPY  138 (420)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~  138 (420)
                      ...++.+||++||||++|.||+++|++|+++|  +.|+|||++|+.+...|++|+++++||+++|++|+|||+|++++||
T Consensus        23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP~  102 (294)
T PLN02413         23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPW  102 (294)
T ss_pred             CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCCc
Confidence            45678899999999999999999999999996  7999999999999889999999999999999999999999999999


Q ss_pred             cccHHHHHHHHhhcCccEEEEcCCCCCC--CCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccc
Q 014671          139 AITEQFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (420)
Q Consensus       139 ~~~~~fl~~ll~~~~~d~vV~G~D~~~g--~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~  205 (420)
                      ..+++|++    +++||++|||++....  ..+.+.|..+++.|++..++|++++|||+|++||+..+.
T Consensus       103 ~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~  167 (294)
T PLN02413        103 VITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYN  167 (294)
T ss_pred             cccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHH
Confidence            98888885    6899999999854432  245678999999999999999999999999999997644

>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]

Probab=99.96  E-value=1.2e-29  Score=221.85  Aligned_cols=131  Identities=44%  Similarity=0.724  Sum_probs=116.6

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhh-cCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~-~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      ++||+.||||++|.||+++|+||+++||+|+|++..|+.+.. +|++|+++++||++++++|+|||+|++++||.++.++
T Consensus         2 ~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~   81 (140)
T COG0615           2 KRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED   81 (140)
T ss_pred             cEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence            579999999999999999999999999999999999988765 6669999999999999999999999999999998887


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCC------CChHHHHHHHHh
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG------VSSTDIVGRILS  202 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~------ISST~Ir~rI~~  202 (420)
                      ++    +++||+|++|+||. +..+...|...+ .|.+..++|+++      +||++|++++..
T Consensus        82 i~----~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~  139 (140)
T COG0615          82 IE----EYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE  139 (140)
T ss_pred             HH----HhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence            74    78999999999999 555555565555 999999999987      899999998863

>PLN02406 ethanolamine-phosphate cytidylyltransferase

Probab=99.96  E-value=1.4e-29  Score=257.68  Aligned_cols=135  Identities=32%  Similarity=0.627  Sum_probs=123.1

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchH
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  332 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~  332 (420)
                      +...+||++||||++|.||+++|++|+++||+|||||++|+.+.+ ++.|+|+++||+++|++|+|||+|++++|+.++.
T Consensus        51 ~~~~rV~~~G~FDllH~GH~~~L~qAk~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~  130 (418)
T PLN02406         51 KKPVRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITE  130 (418)
T ss_pred             CCceEEEEcCeeCCCCHHHHHHHHHHHHhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccch
Confidence            345789999999999999999999999999999999999999987 4459999999999999999999999999998877


Q ss_pred             HHH----hhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHh
Q 014671          333 DMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA  391 (420)
Q Consensus       333 ~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~  391 (420)
                      +++    ++++||++|||+||...   +.+.|.|.+.+.+|++.++++++++|||+|++||+.
T Consensus       131 d~~~~li~~~~~D~vVhGdD~~~~---~~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~  190 (418)
T PLN02406        131 EFMNKLFNEYNIDYIIHGDDPCLL---PDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL  190 (418)
T ss_pred             HHHHHHHHHhCCCEEEECCCcccc---CCchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            766    48999999999998642   456788999999999999999999999999999985

>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)

Probab=99.96  E-value=5.7e-28  Score=217.09  Aligned_cols=135  Identities=40%  Similarity=0.723  Sum_probs=122.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhccccccEEEeCCCccccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~  142 (420)
                      .++||+.|+||++|.||+++|++|+++||.|+|||++|+.+...|+  .|+++++||++++++|+|||+|++..|+.++.
T Consensus         2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~   81 (152)
T cd02173           2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK   81 (152)
T ss_pred             CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence            4689999999999999999999999999999999999999887776  69999999999999999999999988887766


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCC--CCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g--~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                      +|+    ++++||++++|.||...  ..+.+.|..+++.|.+..+++++++|||+|++||+..
T Consensus        82 ~~~----~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~  140 (152)
T cd02173          82 ELI----EHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN  140 (152)
T ss_pred             HHH----HHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            766    57899999999999754  3456779999999999999999999999999999865

CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.

>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]

Probab=99.95  E-value=1.8e-28  Score=234.95  Aligned_cols=140  Identities=44%  Similarity=0.712  Sum_probs=130.9

Q ss_pred             CCCceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCcc
Q 014671           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYA  139 (420)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~  139 (420)
                      ..++.|||++|.||++|.||++.|+||+++.  -+|+|||.+|+...+.||..||+..||++.|++|+|||+|+.++||.
T Consensus        60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~  139 (348)
T KOG2804|consen   60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT  139 (348)
T ss_pred             CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence            5788999999999999999999999999998  58999999999988999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccc
Q 014671          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (420)
Q Consensus       140 ~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~  205 (420)
                      ++++||+    ++++|+|+|.+-+..+.+..+.|..+|+.|++++..||+||||++|+-||...+.
T Consensus       140 lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD  201 (348)
T KOG2804|consen  140 LTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYD  201 (348)
T ss_pred             ccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHH
Confidence            9999985    6899999999888776666778999999999999999999999999999987653

>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional

Probab=99.95  E-value=8.9e-28  Score=242.09  Aligned_cols=141  Identities=30%  Similarity=0.554  Sum_probs=127.4

Q ss_pred             CCCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCC
Q 014671          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWE  329 (420)
Q Consensus       251 ~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~  329 (420)
                      ...++.++||++|+||++|.||+++|++|+++||.|+||+++|+.+.+ ++.|+|+++||+++|++|+|||+|+++.|+.
T Consensus         6 ~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~   85 (353)
T PTZ00308          6 PKKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYT   85 (353)
T ss_pred             CCCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCC
Confidence            344567899999999999999999999999999999999999999977 4459999999999999999999999988888


Q ss_pred             chHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchH
Q 014671          330 VTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHE  394 (420)
Q Consensus       330 ~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~  394 (420)
                      .+.+++++++||++|+|+||..+   ..+.+.|..++..|++.++++++++|||+|++||+....
T Consensus        86 ~~~~fI~~l~~d~vv~GdD~~~g---~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~  147 (353)
T PTZ00308         86 TRLEDLERLECDFVVHGDDISVD---LNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTK  147 (353)
T ss_pred             chHHHHHHhCCCEEEECCCCCCC---CCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhh
Confidence            88889999999999999998765   345677889999999999999999999999999986433

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.95  E-value=8.8e-27  Score=205.08  Aligned_cols=133  Identities=44%  Similarity=0.675  Sum_probs=119.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      +++|+++|+||++|.||+.+|++|+++++.++|++++|+.+.+.|++|+++.+||++++++|+|||.++...|++    |
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~----~   76 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS----Y   76 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC----H
Confidence            468999999999999999999999999999999999998776666679999999999999999999999877664    4


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEec--cCCCCChHHHHHHHHh
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK--RTEGVSSTDIVGRILS  202 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~--r~~~ISST~Ir~rI~~  202 (420)
                      ++.+ .+++++++|+|+||.||.++++.++.+++.|..+.+.  ++.++|||.||++|+.
T Consensus        77 ~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          77 FKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             hHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence            4433 4578999999999999999999999999999988888  7788999999999964

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.95  E-value=9.1e-27  Score=207.57  Aligned_cols=135  Identities=24%  Similarity=0.370  Sum_probs=117.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      .++|+++|+||++|.||+++|++|+++|+.++|++++|+.+.+.+.+|++|.+||++++++++|||.++.. |+...++|
T Consensus         4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~f   82 (144)
T cd02172           4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALEI   82 (144)
T ss_pred             CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHHH
Confidence            46899999999999999999999999999999999999877655557999999999999999999999984 55445677


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCC-----ccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhcc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDG-----TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSM  204 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g-----~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~  204 (420)
                      ++    +++++++|+|+||+||.++     .+.++.+++.|....+.+++++|||+|++||+..+
T Consensus        83 i~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~sts~li~~i~~~~  143 (144)
T cd02172          83 ID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFTGEIVFSSSALINRIFDEL  143 (144)
T ss_pred             HH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEecCCCcchHHHHHHHHhhc
Confidence            74    6899999999999999875     67888999887654444999999999999998653

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.93  E-value=7.6e-26  Score=225.25  Aligned_cols=133  Identities=29%  Similarity=0.415  Sum_probs=118.9

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CCC-CCCCHHHHHHhhhhccccceEEEcCCCCch
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SYH-PIMHLHERSLSVLACRYVDEVIIGAPWEVT  331 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~~-pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~  331 (420)
                      ..++|+++||||++|.||+.||.+||++||.||||+++|.++++  |.. ||.+++.|+.++.++..||.|++++. +++
T Consensus       331 ~~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~e-dTP  409 (467)
T COG2870         331 GKKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDE-DTP  409 (467)
T ss_pred             cCeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecC-CCH
Confidence            35699999999999999999999999999999999999999998  555 99999999999999999999999885 567


Q ss_pred             HHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhc
Q 014671          332 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIAN  392 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~  392 (420)
                      .++|+.++||++|+|.||..+..  .+.  ..+..++|.+..++...+.|||.||++|.+.
T Consensus       410 ~~LI~~~~PdilVKGgDy~~~~i--~g~--~~v~~~GG~v~~i~f~~g~STt~ii~ki~~~  466 (467)
T COG2870         410 EELIEAVKPDILVKGGDYKIEKI--VGA--DIVEAYGGEVLLIPFEEGKSTTKIIEKIRAK  466 (467)
T ss_pred             HHHHHHhCcceEEccCCCChhhc--cch--hhhhhcCCeEEEEecccCCcHHHHHHHHhcc
Confidence            89999999999999999977643  222  2456789999999999999999999999653

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.93  E-value=3.1e-25  Score=197.70  Aligned_cols=130  Identities=35%  Similarity=0.535  Sum_probs=109.3

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhccccccEEEeCCCccccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~  142 (420)
                      .++|+++|+||++|.||+++|++|+++|+.++|++++|+.....++  +|+++.+||.+++++|+|||+++...+. ..+
T Consensus        11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~   89 (144)
T TIGR02199        11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE   89 (144)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence            5689999999999999999999999999999999999997654444  6899999999999999999999984332 235


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhC-CeEEEeccCCCCChHHHHHHHH
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTEGVSSTDIVGRIL  201 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~-g~~~~v~r~~~ISST~Ir~rI~  201 (420)
                      +|+    ++++++++|+|+||++..  ...++.+++. +++..+++++++|||+||+||+
T Consensus        90 ~fi----~~l~~~~vv~G~d~~~~~--~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~  143 (144)
T TIGR02199        90 ELI----GELKPDILVKGGDYKVET--LVGAELVESYGGQVVLLPFVEGRSTTAIIEKIL  143 (144)
T ss_pred             HHH----HHhCCCEEEECCCCCCCc--chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence            666    468999999999998833  2234556655 5899999999999999999996

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.92  E-value=1.5e-24  Score=189.13  Aligned_cols=128  Identities=32%  Similarity=0.496  Sum_probs=108.4

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      +++|+++|+||++|.||+.+|++|+++++.+++++++|+.....+.++++|++||++++++++|||+++...++   ++|
T Consensus         1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f   77 (129)
T cd02171           1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK   77 (129)
T ss_pred             CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence            45899999999999999999999999999999999998743322336899999999999999999999754333   345


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHh
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~  202 (420)
                      ++.+ ++++++++++|+||      .++++.+++.+++..++++.++|||.||++|..
T Consensus        78 ~~~~-~~l~~~~vv~G~d~------~g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~  128 (129)
T cd02171          78 IEDI-KKYNVDVFVMGDDW------EGKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK  128 (129)
T ss_pred             HHHH-HHhCCCEEEECCCC------cchHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence            5543 67999999999999      356788999999999999889999999999863

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.92  E-value=1.3e-24  Score=188.93  Aligned_cols=123  Identities=35%  Similarity=0.508  Sum_probs=102.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHHHHH
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNR  147 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~fl~~  147 (420)
                      |++.|+||++|.||+++|++|+++|+.++|++++|+.....+.+|+++.+||++++++|+|||.+++..|+   ++|++.
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~   77 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD   77 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence            57999999999999999999999999999999999876544558899999999999999999999775544   345554


Q ss_pred             HHhhcCccEEEEcCCCCCCCCCccHHHHHHhC--CeEEEeccCCCCChHHHHHHH
Q 014671          148 LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRI  200 (420)
Q Consensus       148 ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~--g~~~~v~r~~~ISST~Ir~rI  200 (420)
                      + ++++|+++++|+||.      ++++.+++.  .++..+++++++|||.||+.|
T Consensus        78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            3 689999999999992      455666654  356778889999999999864

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02172 RfaE_N N-terminal domain of RfaE

Probab=99.91  E-value=9.8e-24  Score=188.06  Aligned_cols=138  Identities=25%  Similarity=0.335  Sum_probs=114.5

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchH
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK  332 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~  332 (420)
                      +++++|++.|+||++|.||..+|++|+++++.++|++++|+.++. +..|+++++||++++++|+|||.|++.+ ...++
T Consensus         2 ~~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~~   80 (144)
T cd02172           2 RGKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLFD-NPTAL   80 (144)
T ss_pred             CCCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEECC-CCCHH
Confidence            356899999999999999999999999999999999999987766 3359999999999999999999999864 45678


Q ss_pred             HHHhhcCccEEEEcCCcCCCCCC---CCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014671          333 DMITTFNICLVVHGTVSETNTPL---TGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       333 ~~i~~~~~d~vv~G~d~~~~~~~---~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                      +++++++|+++|+|.||....-.   ....+...+.+.+|.+.+. +++++|||+|++||+.++
T Consensus        81 ~fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~  143 (144)
T cd02172          81 EIIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDEL  143 (144)
T ss_pred             HHHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhc
Confidence            99999999999999998764210   0112233445555666777 999999999999998875

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .

>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II

Probab=99.91  E-value=8.9e-24  Score=188.34  Aligned_cols=131  Identities=30%  Similarity=0.429  Sum_probs=113.4

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CC-CCCCCHHHHHHhhhhccccceEEEcCCCCch
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SY-HPIMHLHERSLSVLACRYVDEVIIGAPWEVT  331 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~-~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~  331 (420)
                      ++++|++.|+||.+|.||..+|++|+++|+.++|||+.|+....  +. .|+++++||++++++|++||.|+++++. .+
T Consensus        10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~   88 (144)
T TIGR02199        10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TP   88 (144)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CH
Confidence            46899999999999999999999999999999999999998764  33 4899999999999999999999997654 56


Q ss_pred             HHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHH-hCCeEEEeCCCCCCCHHHHHHHHHh
Q 014671          332 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAK-SMGIFQLLESPKSITTTSVAQRIIA  391 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k-~~G~~~~~~~~~~~Stt~Ii~RI~~  391 (420)
                      ++|++.++|+++|+|.||..+.     ...+...+ .+|++..+++++++|||.|++||++
T Consensus        89 ~~fi~~l~~~~vv~G~d~~~~~-----~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~  144 (144)
T TIGR02199        89 EELIGELKPDILVKGGDYKVET-----LVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK  144 (144)
T ss_pred             HHHHHHhCCCEEEECCCCCCCc-----chhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence            8999999999999999987643     12234444 4568999999999999999999963

RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.

>cd02170 cytidylyltransferase cytidylyltransferase

Probab=99.90  E-value=6.1e-23  Score=180.66  Aligned_cols=132  Identities=32%  Similarity=0.605  Sum_probs=115.0

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +++|++.|+||++|.||+.+|++|++++|.++|+++.|..++. ++.|+++.+||++++++|++||.|++.+|++... .
T Consensus         1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~-~   79 (136)
T cd02170           1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK-P   79 (136)
T ss_pred             CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH-H
Confidence            4789999999999999999999999999999999999987765 4459999999999999999999999999887654 5


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeC--CCCCCCHHHHHHHHHh
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE--SPKSITTTSVAQRIIA  391 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~--~~~~~Stt~Ii~RI~~  391 (420)
                      +.+++||+++.|.||..+   ......+..+++.|..+.+.  .+..+|||.|+++|+.
T Consensus        80 l~~~~~~~vv~G~d~~fg---~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~  135 (136)
T cd02170          80 LEELKPDVIVLGDDQKNG---VDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE  135 (136)
T ss_pred             HHHHCCCEEEECCCCCCC---CcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence            678999999999998664   23344567788889988888  8889999999999853

The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.89  E-value=1.3e-22  Score=212.52  Aligned_cols=133  Identities=28%  Similarity=0.387  Sum_probs=118.0

Q ss_pred             CCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC--CC-CCCCCHHHHHHhhhhccccceEEEcCCCC
Q 014671          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG--SY-HPIMHLHERSLSVLACRYVDEVIIGAPWE  329 (420)
Q Consensus       253 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~--~~-~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~  329 (420)
                      ..++++|++.|+||++|.||+++|++|+++||+|+|||++|+.+++  +. .|+++++||.+.+++|++||+|+..+ ..
T Consensus       337 ~~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~  415 (473)
T PRK11316        337 ARGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-ED  415 (473)
T ss_pred             hcCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CC
Confidence            3457999999999999999999999999999999999999999976  43 39999999999999999999998876 44


Q ss_pred             chHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q 014671          330 VTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII  390 (420)
Q Consensus       330 ~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~  390 (420)
                      .+.+++++++||++++|+||..+.    ....+.+.+.+|+++++++++++|||+|++||.
T Consensus       416 ~~~~~~~~~~~d~vv~G~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~  472 (473)
T PRK11316        416 TPQRLIAEILPDLLVKGGDYKPEE----IAGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR  472 (473)
T ss_pred             CHHHHHHHhCCCEEEECCCCCCCc----cccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence            678999999999999999986542    133567788999999999999999999999995

>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase

Probab=99.88  E-value=2.5e-22  Score=174.59  Aligned_cols=123  Identities=33%  Similarity=0.481  Sum_probs=103.2

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHHHhh
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITT  337 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i~~  337 (420)
                      |++.|+||++|.||.++|++|+++|++++|||++|+.... ++.|+++++||++++++|+|||.|+++.++....+.++.
T Consensus         1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l~~   80 (125)
T TIGR01518         1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDIID   80 (125)
T ss_pred             CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHHHH
Confidence            5789999999999999999999999999999999987665 455999999999999999999999888887777777899


Q ss_pred             cCccEEEEcCCcCCCCCCCCCCChHHHHHh-CCeEEEeCCCCCCCHHHHHHHH
Q 014671          338 FNICLVVHGTVSETNTPLTGQSDPYEVAKS-MGIFQLLESPKSITTTSVAQRI  389 (420)
Q Consensus       338 ~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~-~G~~~~~~~~~~~Stt~Ii~RI  389 (420)
                      ++||++++|.||..+      .+  .+.+. ++....++++..+|||.|++.|
T Consensus        81 ~~~~~vv~G~D~~g~------~~--~l~~~~~~~v~~v~~~~~vSST~Ir~~~  125 (125)
T TIGR01518        81 FNIDVFVMGDDWEGK------FD--FLKDECPLKVVYLPRTEGVSTTKIKKEI  125 (125)
T ss_pred             cCCCEEEECCCccch------HH--HHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence            999999999998432      11  11122 3456678888899999998764

Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.

>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase

Probab=99.87  E-value=1.3e-21  Score=170.69  Aligned_cols=127  Identities=30%  Similarity=0.493  Sum_probs=108.6

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +++|++.|+||++|.||..+|++|+++++.|+|+|++|+.... ++.|++|++||++++++|++||.|+.+.++....+.
T Consensus         1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~~~   80 (129)
T cd02171           1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKIED   80 (129)
T ss_pred             CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChHHH
Confidence            4689999999999999999999999999999999999975433 445999999999999999999999877666656666


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHh
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA  391 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~  391 (420)
                      ++.++|+++++|.||..+         ++.+++.|.+..++.+..+|||.|.+.|.+
T Consensus        81 ~~~l~~~~vv~G~d~~g~---------~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~  128 (129)
T cd02171          81 IKKYNVDVFVMGDDWEGK---------FDFLKEYCEVVYLPRTKGISSTQLKEMLKK  128 (129)
T ss_pred             HHHhCCCEEEECCCCcch---------HHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence            788999999999987322         355677788889999999999999998853

Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.86  E-value=2.5e-21  Score=178.63  Aligned_cols=134  Identities=25%  Similarity=0.365  Sum_probs=104.3

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCC---eEEEEEecchh--hh--hcCC-CCCCcHHHHHHHHhccccccEEEeCCCcc
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGD---ELVVGVVSDEE--II--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPYA  139 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd---~LiVgV~sd~~--i~--~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~~  139 (420)
                      |++.|+|||+|.||+.+|++|+++|+   ...+.++.++.  ..  ..+. .++++.++|+++++++. ||+++. .|++
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~-~~f~   79 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLV-LPFD   79 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEE-eCCC
Confidence            78999999999999999999999975   24444554443  21  2222 67999999999999985 999998 3442


Q ss_pred             -----cc-HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-----eEEEeccC----CCCChHHHHHHHHhc
Q 014671          140 -----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKRT----EGVSSTDIVGRILSS  203 (420)
Q Consensus       140 -----~~-~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-----~~~~v~r~----~~ISST~Ir~rI~~~  203 (420)
                           .+ ++|+++++.+.+++++|+|+||+||.++.++.+.|++.+     ++..++..    ..||||.||+.|.++
T Consensus        80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G  158 (180)
T cd02064          80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG  158 (180)
T ss_pred             HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence                 12 478888776669999999999999999999888776643     35566653    469999999999865

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional

Probab=99.85  E-value=5.7e-21  Score=200.18  Aligned_cols=133  Identities=30%  Similarity=0.454  Sum_probs=113.4

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhccccccEEEeCCCcccc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~  141 (420)
                      ..++|++.|+||++|.||+++|++|+++|+.++|||++|+.+...|+  .|++++++|.+++++|++||++++.. ....
T Consensus       339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~  417 (473)
T PRK11316        339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP  417 (473)
T ss_pred             CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence            36889999999999999999999999999999999999998876675  68999999999999999999998732 2223


Q ss_pred             HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHh
Q 014671          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (420)
Q Consensus       142 ~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~  202 (420)
                      .+|+    ++++||++++|+||.+... .+.+...+.+|+++.+++++++|||+|++||.+
T Consensus       418 ~~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~~  473 (473)
T PRK11316        418 QRLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIRQ  473 (473)
T ss_pred             HHHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHhC
Confidence            4554    5678999999999987532 345566678899999999999999999999963

>PRK07143 hypothetical protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=185.28  Aligned_cols=137  Identities=16%  Similarity=0.258  Sum_probs=111.3

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CCCCCCcHHHHHHHHhccccccEEEeCCCcc---
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KGPPVLSMEERLALVSGLKWVDEVIANAPYA---  139 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~---  139 (420)
                      +.+.|+++|+|||+|.||+.||++|++.++.++|...++|..... +.+++++.+||.++++++ ++|.++. .||+   
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~   91 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEEL   91 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHH
Confidence            345799999999999999999999999988777766666543222 225699999999999998 7898887 3443   


Q ss_pred             ---ccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEecc----CCCCChHHHHHHHHhc
Q 014671          140 ---ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (420)
Q Consensus       140 ---~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r----~~~ISST~Ir~rI~~~  203 (420)
                         ..++|+++++. ++++.||+|+||+||+++.++++.|++.+ .+..++.    ...||||.||+.|.++
T Consensus        92 a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         92 QNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             hCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence               12589988774 99999999999999999999999999988 5665553    2359999999999865

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.83  E-value=3.5e-20  Score=184.06  Aligned_cols=135  Identities=24%  Similarity=0.332  Sum_probs=106.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeE---EEEEecchhh---h-hcCC-CCCCcHHHHHHHHhccccccEEEeCCCc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDEL---VVGVVSDEEI---I-ANKG-PPVLSMEERLALVSGLKWVDEVIANAPY  138 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~L---iVgV~sd~~i---~-~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~  138 (420)
                      .|+++|+|||+|.||+++|++|+++|+.+   .+.++.|+..   . ..+. +++++.+||.++++++ +||.++. .||
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-gVD~~~~-~~F   92 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-GVDYVLV-LPF   92 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-CCCEEEE-ecC
Confidence            79999999999999999999999998643   3345555432   1 1222 6799999999999999 4999997 455


Q ss_pred             c------ccHHHHHHHH-hhcCccEEEEcCCCCCCCCCccHHHHHHhCC-----eEEEecc----CCCCChHHHHHHHHh
Q 014671          139 A------ITEQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILS  202 (420)
Q Consensus       139 ~------~~~~fl~~ll-~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-----~~~~v~r----~~~ISST~Ir~rI~~  202 (420)
                      +      ..++|+++++ ++++++++|+|+||+||.++.++++.|++.+     ++..++.    ...||||.||+.|.+
T Consensus        93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~  172 (305)
T PRK05627         93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE  172 (305)
T ss_pred             CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence            3      1248998855 5699999999999999999999999988863     3455543    357999999999986


Q ss_pred             c
Q 014671          203 S  203 (420)
Q Consensus       203 ~  203 (420)
                      +
T Consensus       173 G  173 (305)
T PRK05627        173 G  173 (305)
T ss_pred             C
Confidence            5

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=1.5e-19  Score=180.51  Aligned_cols=132  Identities=36%  Similarity=0.507  Sum_probs=116.1

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhccccccEEEeCCCccccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~  142 (420)
                      .+.|++.||||.+|.||..+|.||+++||.|+||++||.++.+.||  +||.+++.|+.++.++..||+|++     |++
T Consensus       332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~e  406 (467)
T COG2870         332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDE  406 (467)
T ss_pred             CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecC
Confidence            3489999999999999999999999999999999999999988898  899999999999999999999998     466


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHh
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~  202 (420)
                      |+-.++++.++||++|.|-||+... =.+.-.....+|++..++..++.|||.|+++|..
T Consensus       407 dTP~~LI~~~~PdilVKGgDy~~~~-i~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~  465 (467)
T COG2870         407 DTPEELIEAVKPDILVKGGDYKIEK-IVGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA  465 (467)
T ss_pred             CCHHHHHHHhCcceEEccCCCChhh-ccchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence            6777788899999999999996431 1233334567889999999999999999999975

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=99.80  E-value=1.3e-19  Score=163.74  Aligned_cols=131  Identities=26%  Similarity=0.417  Sum_probs=90.6

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHhC---Ce--EEEEEecchhhhhc--CC-CCCCcHHHHHHHHhccccccEEEe
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKALG---DE--LVVGVVSDEEIIAN--KG-PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~lg---d~--LiVgV~sd~~i~~~--K~-~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      ...+.++++|+|||+|+||+.||++|.+.+   +.  +++.+.++|.....  +. ..+++.+||.++++.+ +||+++.
T Consensus         3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~   81 (157)
T PF06574_consen    3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV   81 (157)
T ss_dssp             T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred             CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE
Confidence            345689999999999999999999999997   32  34444444432222  22 5699999999999997 8999876


Q ss_pred             CCCccc-----c-HHHHHHHHh-hcCccEEEEcCCCCCCCCCccHHHHHHhCCe-----EEEeccC----CCCChHH
Q 014671          135 NAPYAI-----T-EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKRT----EGVSSTD  195 (420)
Q Consensus       135 ~~p~~~-----~-~~fl~~ll~-~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~-----~~~v~r~----~~ISST~  195 (420)
                       .||+-     + ++|+++++. ++++..||+|+||+||+++.++.+.|++.++     +..++..    ..||||+
T Consensus        82 -~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr  157 (157)
T PF06574_consen   82 -IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR  157 (157)
T ss_dssp             -E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred             -ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence             33421     1 489999776 8999999999999999999999999999885     3444432    2499985

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=99.79  E-value=6.3e-19  Score=173.69  Aligned_cols=134  Identities=19%  Similarity=0.282  Sum_probs=103.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhC-----CeEEEEEecchhhhhc--CCCCCCcHHHHHHHHhccccccEEEeCCCcc-
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIAN--KGPPVLSMEERLALVSGLKWVDEVIANAPYA-  139 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lg-----d~LiVgV~sd~~i~~~--K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~-  139 (420)
                      ++++|+|||+|.||+.||++|++.+     ...++.+.++|.....  +.+++++.+||.++++.+ +||.++. .||+ 
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~   78 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE   78 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence            5799999999999999999999875     2345555555442222  223499999999999997 8999988 4442 


Q ss_pred             ----cc-HHHHHHHHh-hcCccEEEEcCCCCCCCCCccHHHHHHhCCeE-----EEecc---CCCCChHHHHHHHHhc
Q 014671          140 ----IT-EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY-----KQIKR---TEGVSSTDIVGRILSS  203 (420)
Q Consensus       140 ----~~-~~fl~~ll~-~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~-----~~v~r---~~~ISST~Ir~rI~~~  203 (420)
                          ++ ++|+++++. +++++.||+|+||+||.++.++++.|++.++.     ..++.   ...||||.||+.|.++
T Consensus        79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G  156 (288)
T TIGR00083        79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG  156 (288)
T ss_pred             HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence                12 379988774 59999999999999999999999999998752     22222   2469999999999976

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=99.75  E-value=8.9e-18  Score=165.84  Aligned_cols=137  Identities=22%  Similarity=0.321  Sum_probs=106.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCC-----eEEEEEecchhhhhcCC---CCCCcHHHHHHHHhccccccEEEeCC
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANA  136 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd-----~LiVgV~sd~~i~~~K~---~pi~t~eER~~ll~~~~~VD~vi~~~  136 (420)
                      ...|+++|+|||+|+||+.+|++|++.+.     .+++.+.+.|.....+.   ..+++.++|.++++.+ +||.++. .
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~   92 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L   92 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence            45799999999999999999999998762     23444444443222221   2399999999999998 8999987 3


Q ss_pred             Ccc--cc----HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCe----EEEeccC--C--CCChHHHHHHHHh
Q 014671          137 PYA--IT----EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR----YKQIKRT--E--GVSSTDIVGRILS  202 (420)
Q Consensus       137 p~~--~~----~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~----~~~v~r~--~--~ISST~Ir~rI~~  202 (420)
                      +|+  +.    ++|++.+++.++++.+|+|+||+||.++.++.++|+..|+    +..++..  +  .||||.||+.+..
T Consensus        93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~  172 (304)
T COG0196          93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE  172 (304)
T ss_pred             eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence            343  21    4899877789999999999999999999999999999885    4444432  3  4999999999885


Q ss_pred             c
Q 014671          203 S  203 (420)
Q Consensus       203 ~  203 (420)
                      +
T Consensus       173 g  173 (304)
T COG0196         173 G  173 (304)
T ss_pred             C
Confidence            4

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.74  E-value=9.7e-18  Score=146.68  Aligned_cols=131  Identities=19%  Similarity=0.244  Sum_probs=99.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccc-ccEEEe-CCCc---cc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-VDEVIA-NAPY---AI  140 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~-VD~vi~-~~p~---~~  140 (420)
                      +++++|+||++|.||+.++++|++++ +.++|++.+++.... +..++++.++|+++++.+.. ++.++. ..+.   ..
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~   79 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL   79 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence            37899999999999999999999999 999999988875432 13579999999999999863 666654 2111   11


Q ss_pred             cHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHh---CCeEEEeccC---CCCChHHHHHH
Q 014671          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VGRYKQIKRT---EGVSSTDIVGR  199 (420)
Q Consensus       141 ~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~---~g~~~~v~r~---~~ISST~Ir~r  199 (420)
                      +.+|+..++..++++++++|.|+.++.++++. +.++.   ..+++.+++.   ..||||.||++
T Consensus        80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             HHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence            22466666677999999999999999887764 33333   2356666776   46999999974

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.71  E-value=1.9e-17  Score=149.02  Aligned_cols=132  Identities=26%  Similarity=0.335  Sum_probs=94.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccH---
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE---  142 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~---  142 (420)
                      ++|+++|+||++|.||..+|++|++++|+|+|||++|+.+.++|..|+++.++|++|++.  +++.+.+...+.+.+   
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d   79 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD   79 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence            479999999999999999999999999999999999987766666799999999999995  566554433332211   


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC----eEEEecc-----CCCCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r-----~~~ISST~Ir~rI~~~  203 (420)
                      .|....  ..++|++|+|+|-..+  +...-+..++.|    ++..++.     ...+|||.||+++.+.
T Consensus        80 ~~gp~~--~~~~d~ivvs~et~~~--~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~  145 (153)
T PRK00777         80 PYGPAL--EDDFDAIVVSPETYPG--ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE  145 (153)
T ss_pred             cCCCcc--ccCCCEEEEChhhhhh--HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence            121111  2369999999994332  222223344444    2445554     4569999999988754

>PRK00777 phosphopantetheine adenylyltransferase; Provisional

Probab=99.68  E-value=2.2e-16  Score=142.20  Aligned_cols=129  Identities=22%  Similarity=0.346  Sum_probs=91.3

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhc----cccceEEEc---CCC
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLAC----RYVDEVIIG---APW  328 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~----~~VD~Vvi~---~~~  328 (420)
                      +.|++.|+||++|.||+.+|++|+.+||+|+|||++|+.+.. ++.|+++.++|+++++.+    ...+.+.+.   +++
T Consensus         2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d~~   81 (153)
T PRK00777          2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDDPY   81 (153)
T ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccccC
Confidence            469999999999999999999999999999999999998865 446999999999999853    222333321   233


Q ss_pred             CchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe----EEEeCC-----CCCCCHHHHHHHHHhchH
Q 014671          329 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLLES-----PKSITTTSVAQRIIANHE  394 (420)
Q Consensus       329 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~~~~-----~~~~Stt~Ii~RI~~~~~  394 (420)
                      ..+   + ..++|++|.|+|...+     ........++.|.    ...++.     +..+|||.|++++.+.+.
T Consensus        82 gp~---~-~~~~d~ivvs~et~~~-----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~~  147 (153)
T PRK00777         82 GPA---L-EDDFDAIVVSPETYPG-----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEHG  147 (153)
T ss_pred             CCc---c-ccCCCEEEEChhhhhh-----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcccc
Confidence            222   2 2369999999873221     1112233444552    234443     567999999999887654

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.64  E-value=9.9e-16  Score=138.75  Aligned_cols=131  Identities=18%  Similarity=0.240  Sum_probs=97.9

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+|||+|.||+.++++|++++|.|+|+++.+.    .+.|+++.++|+++++. ++.+|.|.+......+.+.
T Consensus         1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~~   76 (159)
T PRK00168          1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SKKPLFSLEERVELIREATAHLPNVEVVSFDGLLVDF   76 (159)
T ss_pred             CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CCCCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHHH
Confidence            368999999999999999999999999999999998875    34689999999999988 8999999987766678999


Q ss_pred             HhhcCccEEEEcCC-cCCCCCCCCCCChHHHHHhC----CeEEEeCCC--CCCCHHHHHHHHHhch
Q 014671          335 ITTFNICLVVHGTV-SETNTPLTGQSDPYEVAKSM----GIFQLLESP--KSITTTSVAQRIIANH  393 (420)
Q Consensus       335 i~~~~~d~vv~G~d-~~~~~~~~~~~d~~~~~k~~----G~~~~~~~~--~~~Stt~Ii~RI~~~~  393 (420)
                      ++.++++++++|-+ |..  +.. ..+.....+.+    +.+..+..+  .++|||.|.+||..+.
T Consensus        77 ~~~~~~~~~~~gl~~w~d--~e~-~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g~  139 (159)
T PRK00168         77 AREVGATVIVRGLRAVSD--FEY-EFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLGG  139 (159)
T ss_pred             HHHcCCCEEEecCcchhh--HHH-HHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcCC
Confidence            99999999999943 211  100 00000111122    223233333  3699999999997654

>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.58  E-value=1.3e-14  Score=131.51  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCccccHHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~~~f  144 (420)
                      ++++++|+||++|.||+.++++|++.+|+|+|++.+++    .| .++++.++|++|++. ++.++.+.+..--+++.++
T Consensus         2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~~   76 (159)
T PRK00168          2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVDF   76 (159)
T ss_pred             cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHHH
Confidence            57999999999999999999999999999999987764    24 579999999999987 8888887664212233444


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHH--HHh-C----CeEEEeccC--CCCChHHHHHHHHhc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYAL--AKK-V----GRYKQIKRT--EGVSSTDIVGRILSS  203 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~--lk~-~----g~~~~v~r~--~~ISST~Ir~rI~~~  203 (420)
                      +    +++++++++.|-|-..  +.......  +.+ .    ..+..+...  ..||||.||+++..+
T Consensus        77 ~----~~~~~~~~~~gl~~w~--d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g  138 (159)
T PRK00168         77 A----REVGATVIVRGLRAVS--DFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG  138 (159)
T ss_pred             H----HHcCCCEEEecCcchh--hHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence            4    5678999999954211  11111111  111 1    112222222  259999999999854

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.58  E-value=5.5e-15  Score=147.05  Aligned_cols=126  Identities=19%  Similarity=0.316  Sum_probs=93.6

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhc--cccceEEEc---CCCCch
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLAC--RYVDEVIIG---APWEVT  331 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~--~~VD~Vvi~---~~~~~~  331 (420)
                      +|++.||||+||.||+.+|++|+++||+|||||++|+.+++ ++.| .|+++|+++|+++  ++++.+.+.   +|+.. 
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gp-   79 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGN-   79 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCC-
Confidence            69999999999999999999999999999999999999987 4448 9999999999995  777765553   34433 


Q ss_pred             HHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe----EEEeC-----CCCCCCHHHHHHHHHhc
Q 014671          332 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLLE-----SPKSITTTSVAQRIIAN  392 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~~~-----~~~~~Stt~Ii~RI~~~  392 (420)
                        .+...+||++|.+++...+     +.......++.|.    ++.++     ....+|||.|++.-+..
T Consensus        80 --t~~~~~~d~IVVS~ET~~~-----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~  142 (322)
T PRK01170         80 --TLYEEDYEIIVVSPETYQR-----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG  142 (322)
T ss_pred             --CcccCCCCEEEEecccccc-----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence              3456789999999875332     2222334455563    22332     12347999999965554

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.56  E-value=4.3e-14  Score=128.76  Aligned_cols=125  Identities=23%  Similarity=0.343  Sum_probs=85.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHH-hcccccc-E---EEeCCCcccc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV-SGLKWVD-E---VIANAPYAIT  141 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll-~~~~~VD-~---vi~~~p~~~~  141 (420)
                      |++++|+||++|.||++++++|++.+|+|++++.++..  ..|..+.++.+||++|+ ++++.++ .   +++.......
T Consensus         1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~   78 (165)
T TIGR01527         1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN   78 (165)
T ss_pred             CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence            47899999999999999999999999999999988764  23444555679999999 4556553 3   2221111111


Q ss_pred             HHHHHHHHhh--cCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEec---cCCCCChHHHHHHHHhc
Q 014671          142 EQFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK---RTEGVSSTDIVGRILSS  203 (420)
Q Consensus       142 ~~fl~~ll~~--~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~---r~~~ISST~Ir~rI~~~  203 (420)
                      ..+.. .+..  -++|+|+.|+..        ....+++.| ++..++   |+ ++|||+||++|.++
T Consensus        79 ~~w~~-~v~~~~p~~D~vf~~~~~--------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        79 SIWVS-YVESMTPPFDVVYSNNPL--------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             HHHHH-HHHHhCCCCCEEEECCHH--------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence            11211 1111  178999999432        245666666 445555   54 89999999999864

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.56  E-value=1.4e-14  Score=128.53  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=80.9

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +++++++|+|||+|.||++++++|.+++|.|+|+|..++    +|+|.++++||.++++. .+..++|-+....++..++
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K~plFsleER~~l~~~~~~~l~nV~V~~f~~Llvd~   77 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SKKPLFSLEERVELIREATKHLPNVEVVGFSGLLVDY   77 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----CcCCCcCHHHHHHHHHHHhcCCCceEEEecccHHHHH
Confidence            589999999999999999999999999999999999998    77899999999988865 4777888887777789999


Q ss_pred             HhhcCccEEEEcCC
Q 014671          335 ITTFNICLVVHGTV  348 (420)
Q Consensus       335 i~~~~~d~vv~G~d  348 (420)
                      .++.++.++|||=.
T Consensus        78 ak~~~a~~ivRGLR   91 (159)
T COG0669          78 AKKLGATVLVRGLR   91 (159)
T ss_pred             HHHcCCCEEEEecc
Confidence            99999999999953

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=99.55  E-value=4.4e-14  Score=130.72  Aligned_cols=125  Identities=22%  Similarity=0.211  Sum_probs=92.9

Q ss_pred             cccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccccEE---------Ee--CCCcc
Q 014671           72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEV---------IA--NAPYA  139 (420)
Q Consensus        72 G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~v---------i~--~~p~~  139 (420)
                      -.|||+|+||..++++|.+.++.+.|.+.+.      + .+.++.++|++|++.. +....+         +.  ..|--
T Consensus         6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~   78 (182)
T smart00764        6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSY   78 (182)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhh
Confidence            3799999999999999999999888777653      2 3577999999999852 222211         11  11111


Q ss_pred             c---------------cHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC----eEEEecc----CCCCChHHH
Q 014671          140 I---------------TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSSTDI  196 (420)
Q Consensus       140 ~---------------~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r----~~~ISST~I  196 (420)
                      +               .++|++.+.+++++..|++|+||+||.++.|+.+.|++.+    ++..+++    .+.+|||.|
T Consensus        79 ~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~I  158 (182)
T smart00764       79 FLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTV  158 (182)
T ss_pred             hcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHHHH
Confidence            1               1378875556799999999999999999999999988763    3456665    234999999


Q ss_pred             HHHHHhc
Q 014671          197 VGRILSS  203 (420)
Q Consensus       197 r~rI~~~  203 (420)
                      |+.|.++
T Consensus       159 R~~L~~G  165 (182)
T smart00764      159 RKLLKEG  165 (182)
T ss_pred             HHHHHcC
Confidence            9999754

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.55  E-value=4.4e-15  Score=130.93  Aligned_cols=126  Identities=29%  Similarity=0.424  Sum_probs=92.2

Q ss_pred             EEcCccccCCHHHHHHHHHHHhcCCE-EEEEEecCccccCCCCCCCCHHHHHHhhhhccccce-----------------
Q 014671          260 YIDGAFDLFHAGHVEILKKARQLGDF-LLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDE-----------------  321 (420)
Q Consensus       260 ~~~G~FDl~H~GHi~~L~~Ak~~gd~-LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~-----------------  321 (420)
                      ++.|+|||+|.||+.+|++|++++|. ++|+|.+|....+.++++++.++|+.+++.+..++.                 
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~~~   80 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKKYP   80 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHHST
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhhcc
Confidence            57899999999999999999999997 788899888776544499999999999999887777                 


Q ss_pred             -----EEEcCC-------CCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCC-eEEEeCCCCCCCHHHHHHH
Q 014671          322 -----VIIGAP-------WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLESPKSITTTSVAQR  388 (420)
Q Consensus       322 -----Vvi~~~-------~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~~~~~~~~Stt~Ii~R  388 (420)
                           ++++++       |....++++.+++.++.++.++.....   ..+.+......+ .+........+|||+|.+|
T Consensus        81 ~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~  157 (157)
T PF01467_consen   81 DVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETI---SDDEILEKYPLGIIFILDPPRNEISSTEIRER  157 (157)
T ss_dssp             SSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEE---EHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred             ccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchh---hhccccccccceeEEEecCCCCccCHHHHhcC
Confidence                 888888       777788999999999999865433211   111222222233 3334455567999999987

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.52  E-value=6.9e-14  Score=125.93  Aligned_cols=125  Identities=21%  Similarity=0.265  Sum_probs=85.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCccccHHHHH
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFMN  146 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~~~fl~  146 (420)
                      ++++|+||++|.||..++++|.+.+|++++++++++    .| .++++.++|++|++. ++.++.+.+..-.+++.+++ 
T Consensus         2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l-   75 (153)
T cd02163           2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA-   75 (153)
T ss_pred             EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH-
Confidence            689999999999999999999999999999998764    24 478999999999986 67777776532112344544 


Q ss_pred             HHHhhcCccEEEEcCCCCCCCCCccHHHH--HHhCC----eEEEeccCC---CCChHHHHHHHHhc
Q 014671          147 RLFNEHKIDYIIHGDDPCLLPDGTDAYAL--AKKVG----RYKQIKRTE---GVSSTDIVGRILSS  203 (420)
Q Consensus       147 ~ll~~~~~d~vV~G~D~~~g~~g~~~~~~--lk~~g----~~~~v~r~~---~ISST~Ir~rI~~~  203 (420)
                         +.++.+++++|-|-....  ......  +.+.+    ....+..++   .+|||.||+++..+
T Consensus        76 ---~~l~~~~~i~G~d~~~~~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g  136 (153)
T cd02163          76 ---RKHGANVIVRGLRAVSDF--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG  136 (153)
T ss_pred             ---HHcCCCEEEECCcchhhH--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence               567899999995521111  111111  11111    112222332   49999999999965

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=99.52  E-value=6.8e-14  Score=138.69  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=96.3

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-cc---------ccEEEe
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW---------VDEVIA  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~---------VD~vi~  134 (420)
                      .+++-+.|+|||+|.||..++++|.+.+|.++|.+.+.      + ++.++.++|++|++.. +.         -|.++.
T Consensus       114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~  186 (297)
T cd02169         114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS  186 (297)
T ss_pred             CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence            46889999999999999999999999999888877552      2 5788999999999841 11         122222


Q ss_pred             CCCcc----------------cc-HHHHHHHH-hhcCccEEEEcCCCCCCCCCccHHHHHHhCCe-----EEEecc----
Q 014671          135 NAPYA----------------IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----  187 (420)
Q Consensus       135 ~~p~~----------------~~-~~fl~~ll-~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~-----~~~v~r----  187 (420)
                      ...|.                ++ ++|++ ++ +++++..||+|+||+||.++.++..+++. |+     +..++.    
T Consensus       187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~-~~~~gf~v~~v~~~~~~  264 (297)
T cd02169         187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE-LLSPAIEVIEIERKKYD  264 (297)
T ss_pred             cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh-cccCCCEEEEecccccC
Confidence            21110                00 27887 66 56999999999999999999999555555 43     344443    


Q ss_pred             CCCCChHHHHHHHHhc
Q 014671          188 TEGVSSTDIVGRILSS  203 (420)
Q Consensus       188 ~~~ISST~Ir~rI~~~  203 (420)
                      ...||||.||+.|.++
T Consensus       265 g~~ISST~IR~~l~~G  280 (297)
T cd02169         265 GQPISASTVRQLLKEG  280 (297)
T ss_pred             CcEEcHHHHHHHHHcC
Confidence            2359999999999876

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>cd02163 PPAT Phosphopantetheine adenylyltransferase

Probab=99.52  E-value=7.8e-14  Score=125.58  Aligned_cols=129  Identities=19%  Similarity=0.239  Sum_probs=95.4

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHHHh
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDMIT  336 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~i~  336 (420)
                      ++++.|+|||+|.||+.++++|++.+|.|+|+++++.    .+.|.++.++|+.|++. ++.++.+.+..-...+.+.++
T Consensus         1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l~   76 (153)
T cd02163           1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SKKPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFAR   76 (153)
T ss_pred             CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHHH
Confidence            4689999999999999999999999999999998775    34589999999999976 799999988765557889999


Q ss_pred             hcCccEEEEcCCcCCCCCCCCCCChHHHHHhC-----CeEEEeCCCC--CCCHHHHHHHHHhch
Q 014671          337 TFNICLVVHGTVSETNTPLTGQSDPYEVAKSM-----GIFQLLESPK--SITTTSVAQRIIANH  393 (420)
Q Consensus       337 ~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-----G~~~~~~~~~--~~Stt~Ii~RI~~~~  393 (420)
                      .++.+++++|.|.-.+ +  +.........+.     ..+..+..+.  ++|||.|.+|+..+.
T Consensus        77 ~l~~~~~i~G~d~~~~-~--e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g~  137 (153)
T cd02163          77 KHGANVIVRGLRAVSD-F--EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFGG  137 (153)
T ss_pred             HcCCCEEEECCcchhh-H--HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcCC
Confidence            9999999999542111 1  000011111111     1233333332  599999999998754

Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=99.51  E-value=1.4e-14  Score=132.78  Aligned_cols=138  Identities=18%  Similarity=0.198  Sum_probs=92.0

Q ss_pred             CCCCceEEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhccc----c---ccE
Q 014671           61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLK----W---VDE  131 (420)
Q Consensus        61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~~----~---VD~  131 (420)
                      .......|+++|+||++|.||+.||++|.++| +.++||+++|+.....+. ..+.+.++|.+.++..-    .   ++.
T Consensus        15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i   94 (177)
T PLN02388         15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA   94 (177)
T ss_pred             CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence            33446789999999999999999999999998 479999999997533222 56999999999998621    1   122


Q ss_pred             EEeCCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCe--EEEec---c---CCCCChHHHHHHHHhc
Q 014671          132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIK---R---TEGVSSTDIVGRILSS  203 (420)
Q Consensus       132 vi~~~p~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~--~~~v~---r---~~~ISST~Ir~rI~~~  203 (420)
                      +-+..||..+.       ..-++|++|++..-..|...-..+...+....  +..++   .   ...||||.||+|+.+.
T Consensus        95 ~~i~D~~Gpt~-------~~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~  167 (177)
T PLN02388         95 EPIIDPYGPSI-------VDENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK  167 (177)
T ss_pred             EEecCCCCCcc-------cCCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence            22345554331       12368999999886665433333322221112  22222   1   2369999999999876


Q ss_pred             cc
Q 014671          204 ME  205 (420)
Q Consensus       204 ~~  205 (420)
                      .+
T Consensus       168 ~~  169 (177)
T PLN02388        168 AV  169 (177)
T ss_pred             HH
Confidence            54

>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain

Probab=99.49  E-value=1.2e-13  Score=120.81  Aligned_cols=129  Identities=19%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcC-CEEEEEEecCccccCCCCCCCCHHHHHHhhhhccc-cceEEEcCCCCc-----
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRY-VDEVIIGAPWEV-----  330 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~g-d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~-VD~Vvi~~~~~~-----  330 (420)
                      ++++.|+||++|.||..+|++|++++ |.++|++.+|......+.++++.++|+.+++++.. +|.|++......     
T Consensus         1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~~   80 (143)
T cd02039           1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILLA   80 (143)
T ss_pred             CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccCH
Confidence            57899999999999999999999999 99999999986443222489999999999999985 777777432211     


Q ss_pred             ---hHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCC-eEEEeCCC---CCCCHHHHHHH
Q 014671          331 ---TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLESP---KSITTTSVAQR  388 (420)
Q Consensus       331 ---~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~~~~~---~~~Stt~Ii~R  388 (420)
                         ....+..+++++++.|.|+..+- ..++. ........+ .++.+++.   ..+|||.|.+|
T Consensus        81 ~~~~~~~~~~~~~~~~v~G~d~~~~~-~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~  143 (143)
T cd02039          81 VVFILKILLKVGPDKVVVGEDFAFGK-NASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL  143 (143)
T ss_pred             HHHHHHHHHHcCCcEEEECCccccCC-chhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence               12356678999999999976652 12221 111111233 23344444   56999999764

Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.48  E-value=4.2e-13  Score=122.09  Aligned_cols=126  Identities=21%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHh-cccccc------EEEeCCCcc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIANAPYA  139 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD------~vi~~~p~~  139 (420)
                      +++++|+||++|.||+.++++|.+.+|+|+|++.++...  .+....++.+||++|++ ++..+|      .+++...+.
T Consensus         1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~   78 (163)
T cd02166           1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE   78 (163)
T ss_pred             CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence            378999999999999999999999999999998776532  22345578899999999 455554      333322122


Q ss_pred             ccHHHHHHHHhhc-CccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEeccC--CCCChHHHHHHHHh
Q 014671          140 ITEQFMNRLFNEH-KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT--EGVSSTDIVGRILS  202 (420)
Q Consensus       140 ~~~~fl~~ll~~~-~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~--~~ISST~Ir~rI~~  202 (420)
                      ..+.+...+.... ++|+++.|++|..        ..+++.| .+..++++  .++|+|.||++|.+
T Consensus        79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            3334443332222 4789999965321        2334444 44566764  47999999999874

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional

Probab=99.48  E-value=8.7e-14  Score=138.53  Aligned_cols=125  Identities=25%  Similarity=0.379  Sum_probs=89.4

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc--ccccEEEe---CCCcccc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KWVDEVIA---NAPYAIT  141 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~--~~VD~vi~---~~p~~~~  141 (420)
                      +|++.|+||.+|.||..+|++|+++||.|+|||++|+.+.++|..| .++++|+++|+++  +.++.+..   ..||..+
T Consensus         2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt   80 (322)
T PRK01170          2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT   80 (322)
T ss_pred             EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence            6999999999999999999999999999999999999887666667 9999999999984  45554322   3344322


Q ss_pred             HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC----eEEEecc---CC--CCChHHHHHHHH
Q 014671          142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR---TE--GVSSTDIVGRIL  201 (420)
Q Consensus       142 ~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r---~~--~ISST~Ir~rI~  201 (420)
                      .       ...++|++|+|.+-..+.  ...-+..++.|    +++.++.   .+  .+|||.||+.-.
T Consensus        81 ~-------~~~~~d~IVVS~ET~~~~--~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~ei  140 (322)
T PRK01170         81 L-------YEEDYEIIVVSPETYQRA--LKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEI  140 (322)
T ss_pred             c-------ccCCCCEEEEeccccccH--HHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhc
Confidence            1       235799999999965542  22222333444    2333332   22  389999998644

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.46  E-value=1.1e-13  Score=106.23  Aligned_cols=64  Identities=42%  Similarity=0.662  Sum_probs=58.4

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccce
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDE  321 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~  321 (420)
                      ++++.|+||++|.||+.+|++|++++|.++|+|.+|+..+. ++.|+++.++|..++++|.++|.
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   65 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE   65 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence            58999999999999999999999999999999999888776 33499999999999999998874

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)

Probab=99.46  E-value=9.3e-14  Score=122.45  Aligned_cols=130  Identities=28%  Similarity=0.327  Sum_probs=75.9

Q ss_pred             EEecccCcCCHHHHHHHHHHHHhCCe-EEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccE----------------
Q 014671           69 YMDGCFDLMHYGHANALRQAKALGDE-LVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE----------------  131 (420)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~lgd~-LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~----------------  131 (420)
                      +++|+||++|.||+.+|++|++.++. +++++.++....+. ++++++.++|++|++.+...+.                
T Consensus         1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~~   79 (157)
T PF01467_consen    1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKKY   79 (157)
T ss_dssp             EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHHS
T ss_pred             CeeeEcCcccHHHHHHHHHHHHhcccccccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhhc
Confidence            57999999999999999999999986 57777777754322 2489999999999998666655                


Q ss_pred             ------EEeCCCc--ccc-HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEeccCCCCChHHHHHH
Q 014671          132 ------VIANAPY--AIT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRTEGVSSTDIVGR  199 (420)
Q Consensus       132 ------vi~~~p~--~~~-~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~~~ISST~Ir~r  199 (420)
                            ++.+.+.  .+. .....+++..+++.++..+.+..........+......+ .+........||||+||+|
T Consensus        80 ~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~  157 (157)
T PF01467_consen   80 PDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER  157 (157)
T ss_dssp             TSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred             cccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence                  4444330  000 011233444555666666644321111111121112211 2334444567999999986

Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....

>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase

Probab=99.46  E-value=9.4e-13  Score=119.97  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhh-hhccccc-e---EEEcCCCCchHH
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSV-LACRYVD-E---VIIGAPWEVTKD  333 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v-~~~~~VD-~---Vvi~~~~~~~~~  333 (420)
                      .++.|+|||||.||++++++|++.+|+|+|+|.++..-. +.++.++.+||.+|+ ++++.++ .   +++.... ...+
T Consensus         2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~~~-k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~-~~~~   79 (165)
T TIGR01527         2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQESH-TLENPFTAGERILMITQSLKEVGDLTYYIIPIEDI-ERNS   79 (165)
T ss_pred             eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCc-cHHH
Confidence            578999999999999999999999999999999887422 334555778999999 6678774 3   2222222 2334


Q ss_pred             HHhhc------CccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEE-EeC---CCCCCCHHHHHHHHHhc
Q 014671          334 MITTF------NICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQ-LLE---SPKSITTTSVAQRIIAN  392 (420)
Q Consensus       334 ~i~~~------~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~-~~~---~~~~~Stt~Ii~RI~~~  392 (420)
                      .+..+      ++|+++.|...           .....++.|..+ .++   ++ .+|+|.|.++|.++
T Consensus        80 ~w~~~v~~~~p~~D~vf~~~~~-----------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~  136 (165)
T TIGR01527        80 IWVSYVESMTPPFDVVYSNNPL-----------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG  136 (165)
T ss_pred             HHHHHHHHhCCCCCEEEECCHH-----------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence            55666      78999988311           134556677543 444   44 79999999999875

In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.45  E-value=6.1e-13  Score=119.98  Aligned_cols=119  Identities=22%  Similarity=0.311  Sum_probs=79.8

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccccc----EEEeCCCccccH
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD----EVIANAPYAITE  142 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD----~vi~~~p~~~~~  142 (420)
                      +++++|+||++|.||+.++++|++.+|.|++++..++    .| .+..+.++|++|++.+- .|    .|....  +++.
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~-~~~~~~~v~~~e--~yt~   72 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SK-KPLFSLEERVELIKDAT-KHLPNVRVDVFD--GLLV   72 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHH-hhCCCeEEcCcc--chHH
Confidence            3789999999999999999999999999999987542    34 47889999999998752 33    222211  2334


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHh---CC-------eEEEeccCC---CCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VG-------RYKQIKRTE---GVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~---~g-------~~~~v~r~~---~ISST~Ir~rI~~~  203 (420)
                      +++    +.++.++++.|-|-.      .+++.+.+   ..       ..+.+...+   .||||.||+++..+
T Consensus        73 dt~----~~l~~~~~i~G~~~~------~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  136 (155)
T TIGR01510        73 DYA----KELGATFIVRGLRAA------TDFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG  136 (155)
T ss_pred             HHH----HHcCCCEEEecCcch------hhHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence            444    567889999985421      11111110   11       112222232   69999999999865

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.45  E-value=1.3e-12  Score=122.74  Aligned_cols=136  Identities=21%  Similarity=0.182  Sum_probs=91.3

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccEEEeC----
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIAN----  135 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vi~~----  135 (420)
                      .+++++++|+|||+|.||+.++++|++..  |.+++.+++.+.   .|. +.+.+.++|++|++. +...+.+...    
T Consensus         3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~   79 (203)
T PRK00071          3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL   79 (203)
T ss_pred             CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence            35688999999999999999999999876  788888776652   343 368899999999974 3343433321    


Q ss_pred             --CCccccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC----------------------
Q 014671          136 --APYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT----------------------  188 (420)
Q Consensus       136 --~p~~~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~----------------------  188 (420)
                        ...++|.+.++.+.+.+ ++   ++++|.|--..-..+..++.+-+...+.+++|.                      
T Consensus        80 ~~~~~syT~~tl~~l~~~~-p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i  158 (203)
T PRK00071         80 ERPGPSYTIDTLRELRARY-PDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAI  158 (203)
T ss_pred             hCCCCCCHHHHHHHHHHHC-CCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCE
Confidence              23445667777665555 44   899999843322333344444444444433331                      


Q ss_pred             -------CCCChHHHHHHHHhc
Q 014671          189 -------EGVSSTDIVGRILSS  203 (420)
Q Consensus       189 -------~~ISST~Ir~rI~~~  203 (420)
                             ..||||+||+++.++
T Consensus       159 ~~~~~~~~~ISST~IR~~l~~g  180 (203)
T PRK00071        159 TLLDVPLLAISSTAIRERIKEG  180 (203)
T ss_pred             EEEeCCCCccCHHHHHHHHHcC
Confidence                   249999999999854

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=99.45  E-value=5.8e-13  Score=124.55  Aligned_cols=137  Identities=23%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccE------EE
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDE------VI  133 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~------vi  133 (420)
                      .+++++++|+|||+|.||+.+.++|.+..  |.|++.++..+   ..|. +...+.++|++|++- ++....      .+
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~   78 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI   78 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence            46789999999999999999999999975  77777776655   3344 679999999999973 322222      22


Q ss_pred             eCCCccccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCC---------------------
Q 014671          134 ANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTE---------------------  189 (420)
Q Consensus       134 ~~~p~~~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~---------------------  189 (420)
                      ...+.++|-++++.+.+++++|   ++++|.|--..-..+-.++.+-+.+++..++|..                     
T Consensus        79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~  158 (197)
T COG1057          79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP  158 (197)
T ss_pred             HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence            3345567788998877688888   5899999654445566777888888887766632                     


Q ss_pred             --CCChHHHHHHHHhc
Q 014671          190 --GVSSTDIVGRILSS  203 (420)
Q Consensus       190 --~ISST~Ir~rI~~~  203 (420)
                        .||||.||+++..+
T Consensus       159 ~~~ISSt~IR~~~~~~  174 (197)
T COG1057         159 RLDISSTEIRERIRRG  174 (197)
T ss_pred             cccCchHHHHHHHhCC
Confidence              49999999999865

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.45  E-value=4.7e-13  Score=118.64  Aligned_cols=89  Identities=22%  Similarity=0.309  Sum_probs=75.0

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCC-CCchHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP-WEVTKDM  334 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~-~~~~~~~  334 (420)
                      +++++.|+|||+|.||++++++|.+++|+|+|++..+.    .++|.++.++|..+++ +++..+.|.+... .+++.++
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~~   77 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DKSNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAEI   77 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CCCCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHHH
Confidence            68999999999999999999999999999999999875    4558999999998884 4566666666432 4678899


Q ss_pred             HhhcCccEEEEcCCc
Q 014671          335 ITTFNICLVVHGTVS  349 (420)
Q Consensus       335 i~~~~~d~vv~G~d~  349 (420)
                      .++.+.+++|+|=..
T Consensus        78 ~~~~~a~~ivrGlR~   92 (140)
T PRK13964         78 AKKLGANFLIRSARN   92 (140)
T ss_pred             HHHCCCeEEEEecCC
Confidence            999999999999543

>TIGR00125 cyt_tran_rel cytidyltransferase-related domain

Probab=99.44  E-value=2.1e-13  Score=104.81  Aligned_cols=64  Identities=52%  Similarity=0.768  Sum_probs=57.0

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccccc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD  130 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD  130 (420)
                      +++++|+||++|.||+.++++|+++++.+++++.+|+.....|..++++.++|.++++.+.+++
T Consensus         1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   64 (66)
T TIGR00125         1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD   64 (66)
T ss_pred             CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence            4799999999999999999999999999999999987765555459999999999999987765

Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.

>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme

Probab=99.44  E-value=7.4e-13  Score=122.25  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=93.1

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCC---EEEEEEecCcccc----C-C-CCCCCCHHHHHHhhhhccccceEEEcCCC-
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGD---FLLVGIYTDQIVR----G-S-YHPIMHLHERSLSVLACRYVDEVIIGAPW-  328 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd---~LiVgV~~D~~v~----~-~-~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~-  328 (420)
                      |++-|+||.+|.||..+|++|+++++   ...|.++-|....    . + ..|+++.++|+++++++. ||.|++.+.. 
T Consensus         2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~   80 (180)
T cd02064           2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK   80 (180)
T ss_pred             EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence            78999999999999999999999975   3566666555432    1 2 248999999999999998 9999985321 


Q ss_pred             ----CchHHHHhhc----CccEEEEcCCcCCCCCCCCCCChH---HHHHhCC-eEEEeCC----CCCCCHHHHHHHHHhc
Q 014671          329 ----EVTKDMITTF----NICLVVHGTVSETNTPLTGQSDPY---EVAKSMG-IFQLLES----PKSITTTSVAQRIIAN  392 (420)
Q Consensus       329 ----~~~~~~i~~~----~~d~vv~G~d~~~~~~~~~~~d~~---~~~k~~G-~~~~~~~----~~~~Stt~Ii~RI~~~  392 (420)
                          ....+|++.+    +|+.+|.|.||....- ..+ +..   ...+..| ....++.    ...+|||.|.+.|.+.
T Consensus        81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~-~~g-~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G  158 (180)
T cd02064          81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKG-RSG-DAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG  158 (180)
T ss_pred             HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCC-CCC-CHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence                1345565543    7999999999976521 111 222   2334445 3455554    3679999999988655


Q ss_pred             h
Q 014671          393 H  393 (420)
Q Consensus       393 ~  393 (420)
                      .
T Consensus       159 ~  159 (180)
T cd02064         159 D  159 (180)
T ss_pred             C
Confidence            4

FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial

Probab=99.42  E-value=2.2e-12  Score=116.40  Aligned_cols=130  Identities=20%  Similarity=0.261  Sum_probs=89.0

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEEcCCCCchHHHHh
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKDMIT  336 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi~~~~~~~~~~i~  336 (420)
                      ++++.|+|||+|.||+.++++|++.+|.|+++++.+.    .+.+..+.++|+.|++.+ ..-+.+.+......+.+.++
T Consensus         1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p----~k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~dt~~   76 (155)
T TIGR01510         1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNP----SKKPLFSLEERVELIKDATKHLPNVRVDVFDGLLVDYAK   76 (155)
T ss_pred             CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCC----CCCCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHHHHH
Confidence            4789999999999999999999999999999998553    445889999999999775 44455555444457889999


Q ss_pred             hcCccEEEEcCCcCCCCCCCCCCChHHHHH----hCCeEEEeCCC--CCCCHHHHHHHHHhch
Q 014671          337 TFNICLVVHGTVSETNTPLTGQSDPYEVAK----SMGIFQLLESP--KSITTTSVAQRIIANH  393 (420)
Q Consensus       337 ~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k----~~G~~~~~~~~--~~~Stt~Ii~RI~~~~  393 (420)
                      .+++++++.|-+.-.+ +. .........+    .......+..+  .++|||.|.+|+..++
T Consensus        77 ~l~~~~~i~G~~~~~~-~~-~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~  137 (155)
T TIGR01510        77 ELGATFIVRGLRAATD-FE-YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFGG  137 (155)
T ss_pred             HcCCCEEEecCcchhh-HH-HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcCC
Confidence            9999999999542111 10 0000000000    01222222222  2799999999998764

This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.41  E-value=2.2e-12  Score=124.50  Aligned_cols=118  Identities=21%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-ccc----------ccE
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKW----------VDE  131 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~----------VD~  131 (420)
                      +++++++|+||++|.||+.++++|.+..  |++++.+..++   ..| ....+.++|++|++. ++.          .|.
T Consensus        22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~   97 (243)
T PRK06973         22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD   97 (243)
T ss_pred             ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence            4578999999999999999999999875  88888887765   234 567799999999973 221          111


Q ss_pred             EEeCCCccccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEec
Q 014671          132 VIANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIK  186 (420)
Q Consensus       132 vi~~~p~~~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~  186 (420)
                      -+.....++|.+.++.+-+++.++   ++++|.|--..-..+..++.+-+...+++++
T Consensus        98 Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~~  155 (243)
T PRK06973         98 EIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAAT  155 (243)
T ss_pred             hhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEEE
Confidence            122223456678888776777455   7899998544334444445444444444333

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=99.39  E-value=2.1e-12  Score=120.19  Aligned_cols=134  Identities=19%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccccEEEe------CCC
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIA------NAP  137 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~vi~------~~p  137 (420)
                      +++++|+|||+|.||..+++.|++.+  |.+++.+..++.   .|..+..+.++|++|++.+ .....+..      ...
T Consensus         1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~   77 (192)
T cd02165           1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG   77 (192)
T ss_pred             CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence            36899999999999999999999998  999988876542   3435788999999999853 22222322      112


Q ss_pred             ccccHHHHHHHHhhcC-cc-EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC--------------------------C
Q 014671          138 YAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------------E  189 (420)
Q Consensus       138 ~~~~~~fl~~ll~~~~-~d-~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~--------------------------~  189 (420)
                      ..+|.+.++.+.+.+. .+ ++++|.|--.....+..++.+-+...+.+++|.                          .
T Consensus        78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (192)
T cd02165          78 PSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLL  157 (192)
T ss_pred             CCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCcc
Confidence            3456677777665552 34 788899853333334444555555555555442                          2


Q ss_pred             CCChHHHHHHHHhc
Q 014671          190 GVSSTDIVGRILSS  203 (420)
Q Consensus       190 ~ISST~Ir~rI~~~  203 (420)
                      .||||+||+++.++
T Consensus       158 ~iSST~IR~~~~~g  171 (192)
T cd02165         158 NISSTEIRERLKNG  171 (192)
T ss_pred             ccCHHHHHHHHHcC
Confidence            49999999999854

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.39  E-value=8e-13  Score=117.79  Aligned_cols=121  Identities=28%  Similarity=0.355  Sum_probs=79.7

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhcc----c-cc--cEEEeCC
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSGL----K-WV--DEVIANA  136 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~~----~-~V--D~vi~~~  136 (420)
                      +|+++|+||++|.||+.+|++|.+++ +.+++|+++|+... .|.  .++++.++|+++++.+    . .+  +.+-+..
T Consensus         1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~-~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d   79 (143)
T cd02164           1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLK-NKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD   79 (143)
T ss_pred             CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcc-cCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence            48899999999999999999999998 88999999998443 333  3689999999999863    1 01  1222344


Q ss_pred             CccccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHH-hCC----eEEEecc------CCCCChHHHHH
Q 014671          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR------TEGVSSTDIVG  198 (420)
Q Consensus       137 p~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk-~~g----~~~~v~r------~~~ISST~Ir~  198 (420)
                      ||..+..       .-.+|++|+...-..|..   ..+..+ +.|    ++..++.      ...||||.||+
T Consensus        80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~---~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~  142 (143)
T cd02164          80 PYGPTGT-------DPDLEAIVVSPETYPGAL---KINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR  142 (143)
T ss_pred             CCCCccc-------CCCCCEEEEcHHHhhhHH---HHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence            5443321       135789999877544322   222222 233    1233332      23599999996

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=99.35  E-value=5.5e-12  Score=115.99  Aligned_cols=133  Identities=17%  Similarity=0.100  Sum_probs=90.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccc--cEEEe-C------
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV--DEVIA-N------  135 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~V--D~vi~-~------  135 (420)
                      ++++++|+|||+|.||+.+++++ +..|++++.+....   +.+ ++..+.++|++|++.+ ...  ..+.+ +      
T Consensus         3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~   77 (174)
T PRK08887          3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY   77 (174)
T ss_pred             eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence            57899999999999999999996 45698888876521   112 3677999999999752 111  12221 0      


Q ss_pred             --CCccccHHHHHHHHhhcC-cc-EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          136 --APYAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       136 --~p~~~~~~fl~~ll~~~~-~d-~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                        .+..+|.+++..+.+++. .+ ++++|.|-......+..++.+-+...+...++...||||+||+++..+
T Consensus        78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g  149 (174)
T PRK08887         78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACPEKVPIRSTDIRNALQNG  149 (174)
T ss_pred             cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence              222345677777666552 22 577798854333334446666566667777776789999999999854

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=99.35  E-value=7e-12  Score=116.93  Aligned_cols=132  Identities=20%  Similarity=0.216  Sum_probs=86.4

Q ss_pred             EEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHh-ccccccEEEeC------CCc
Q 014671           69 YMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVS-GLKWVDEVIAN------APY  138 (420)
Q Consensus        69 ~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~-~~~~VD~vi~~------~p~  138 (420)
                      +++|+|||+|.||+.++++|.+..  |.+++.+...+.   .|. +...+.++|++|++ ++...+.+...      ...
T Consensus         1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~   77 (193)
T TIGR00482         1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP   77 (193)
T ss_pred             CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence            368999999999999999999985  778887776653   343 34579999999997 33333333321      223


Q ss_pred             cccHHHHHHHHhhcC-cc-EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC----------------------------
Q 014671          139 AITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT----------------------------  188 (420)
Q Consensus       139 ~~~~~fl~~ll~~~~-~d-~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~----------------------------  188 (420)
                      ++|.+.++.+-+++. .+ ++++|.|--..-..+..++.+-+...+.+++|.                            
T Consensus        78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~  157 (193)
T TIGR00482        78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPR  157 (193)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCc
Confidence            456677877666552 23 788999843322233344444444444444431                            


Q ss_pred             CCCChHHHHHHHHhc
Q 014671          189 EGVSSTDIVGRILSS  203 (420)
Q Consensus       189 ~~ISST~Ir~rI~~~  203 (420)
                      ..||||+||+++.++
T Consensus       158 ~~iSST~IR~~l~~g  172 (193)
T TIGR00482       158 VPISSTEIRQRIRQG  172 (193)
T ss_pred             cccCHHHHHHHHHcC
Confidence            259999999999854

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=99.33  E-value=2.3e-11  Score=121.13  Aligned_cols=134  Identities=19%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEE---EEEEecCccccC------CCCCCCCHHHHHHhhhhccccceEEEcCCC
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVRG------SYHPIMHLHERSLSVLACRYVDEVIIGAPW  328 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~L---iVgV~~D~~v~~------~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~  328 (420)
                      .|++-|+||.+|.||..+|++|+++++.+   .|.++-|...+.      ...++++.+||...+++|. ||.+++.+..
T Consensus        15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~F~   93 (305)
T PRK05627         15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLPFD   93 (305)
T ss_pred             EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence            79999999999999999999999998765   345555554321      2348999999999999998 9999984321


Q ss_pred             -----CchHHHHhh-----cCccEEEEcCCcCCCCCCCCCCChHHH---HHhCC-eEEEeCC----CCCCCHHHHHHHHH
Q 014671          329 -----EVTKDMITT-----FNICLVVHGTVSETNTPLTGQSDPYEV---AKSMG-IFQLLES----PKSITTTSVAQRII  390 (420)
Q Consensus       329 -----~~~~~~i~~-----~~~d~vv~G~d~~~~~~~~~~~d~~~~---~k~~G-~~~~~~~----~~~~Stt~Ii~RI~  390 (420)
                           -..++|++.     ++|+.+|.|.||....  ...-+...+   .+..| .+..++.    ...+|||.|.+.|.
T Consensus        94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~--~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~  171 (305)
T PRK05627         94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGK--KRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALA  171 (305)
T ss_pred             HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCC--CCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHH
Confidence                 145667764     8999999999997652  111122222   22234 3444433    36799999999886


Q ss_pred             hchH
Q 014671          391 ANHE  394 (420)
Q Consensus       391 ~~~~  394 (420)
                      +..-
T Consensus       172 ~G~i  175 (305)
T PRK05627        172 EGDL  175 (305)
T ss_pred             cCCH
Confidence            6543

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.30  E-value=4.7e-12  Score=117.16  Aligned_cols=129  Identities=15%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-cc--cc--EEEe-CCC-cc-
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW--VD--EVIA-NAP-YA-  139 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~--VD--~vi~-~~p-~~-  139 (420)
                      ++++|+||++|.||+.++++|.+.+|+|+|++.+.+.. +.+ ++.++.+||++|++.+ ..  +|  .+.. ..| +. 
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~   79 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY   79 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence            58999999999999999999999999999999876532 122 3568999999999873 21  11  2221 111 11 


Q ss_pred             ccHHHHHH---HHh---hcCccEEEEcCCCCCCCCCccHHH-HHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          140 ITEQFMNR---LFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       140 ~~~~fl~~---ll~---~~~~d~vV~G~D~~~g~~g~~~~~-~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                      .+.-+..+   ...   .-+++++++|.|...    ...|. .+.+.+ +..++..+.+|||+||++|..+
T Consensus        80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~~-~~~~p~~~~iSsT~IR~~i~~~  145 (181)
T cd02168          80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQWD-YLEVPNYPDLNATDIRRAYFEG  145 (181)
T ss_pred             ChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCcC-eecCccccccCHHHHHHHHHhc
Confidence            12222222   111   125688999977621    11111 112222 3355556689999999999863

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal

Probab=99.30  E-value=1.9e-11  Score=111.22  Aligned_cols=120  Identities=19%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccc------eEEEcCCCCch
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVD------EVIIGAPWEVT  331 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD------~Vvi~~~~~~~  331 (420)
                      .++.|+|||||.||+.++++|.+.+|.|+|+|.++....+ +.+.++.+||+.|++ +++.+|      .|+....... 
T Consensus         2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~~~-~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~~-   79 (163)
T cd02166           2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESHT-LENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIER-   79 (163)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCCc-
Confidence            5789999999999999999999999999999987764432 345578899999998 667775      3333222222 


Q ss_pred             HHHHhhc------CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeCC--CCCCCHHHHHHHHHh
Q 014671          332 KDMITTF------NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLES--PKSITTTSVAQRIIA  391 (420)
Q Consensus       332 ~~~i~~~------~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~~--~~~~Stt~Ii~RI~~  391 (420)
                      .+...++      +.|+++-|.+|...           .....|. +..++.  .+++|+|.|.+.|.+
T Consensus        80 ~~~w~~~v~~~vp~~div~~g~~~~~~-----------~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~  137 (163)
T cd02166          80 NSLWVSYVESLTPPFDVVYSGNPLVAR-----------LFKEAGYEVRRPPMFNREEYSGTEIRRLMLG  137 (163)
T ss_pred             hHHHHHHHHHHCCCCCEEEECchHHHH-----------hhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence            2344444      67888888543221           2223443 335565  347999999999864

This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.

>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional

Probab=99.29  E-value=2.5e-11  Score=107.66  Aligned_cols=88  Identities=24%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCC-ccccHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAP-YAITEQ  143 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p-~~~~~~  143 (420)
                      +++++.|+|||+|.||+.++++|.+++|+++|++..++    .| +++++.++|+++++. ++....+-.... -.+..+
T Consensus         2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v~   76 (140)
T PRK13964          2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTAE   76 (140)
T ss_pred             eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHHH
Confidence            57999999999999999999999999999999998764    34 478999999999964 222232222110 122334


Q ss_pred             HHHHHHhhcCccEEEEcCC
Q 014671          144 FMNRLFNEHKIDYIIHGDD  162 (420)
Q Consensus       144 fl~~ll~~~~~d~vV~G~D  162 (420)
                      |    .++.+++++|.|=.
T Consensus        77 ~----~~~~~a~~ivrGlR   91 (140)
T PRK13964         77 I----AKKLGANFLIRSAR   91 (140)
T ss_pred             H----HHHCCCeEEEEecC
Confidence            4    46789999999954

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=99.26  E-value=9e-11  Score=107.97  Aligned_cols=127  Identities=20%  Similarity=0.312  Sum_probs=82.2

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-c--cc--cEE-EeCCC-cc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K--WV--DEV-IANAP-YA  139 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~--~V--D~v-i~~~p-~~  139 (420)
                      +++++|.||++|.||+.++++|.+.+|+|+|++.+...  ..+....++.+||++|++.. .  .+  +.+ +...| ..
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~   79 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE   79 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence            68999999999999999999999999999998865431  12223457889999999852 1  12  122 22112 22


Q ss_pred             ccHHHHHHHHhh-cCccEEEEcCCCCCCCCCccHHHHHHhCCe-EEEec--cCCCCChHHHHHHHHhc
Q 014671          140 ITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVGR-YKQIK--RTEGVSSTDIVGRILSS  203 (420)
Q Consensus       140 ~~~~fl~~ll~~-~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~-~~~v~--r~~~ISST~Ir~rI~~~  203 (420)
                      ..+.+...+... ..+|+++.|+.+        .....++.|- +...+  ....+|+|+||++|.++
T Consensus        80 ~~~~w~~~v~~~~~~~d~v~~~~~y--------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g  139 (174)
T PRK01153         80 FNSIWVSHVESYTPPFDVVYTGNPL--------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG  139 (174)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECChH--------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence            333344433222 256899998532        1223334443 44544  34679999999999754

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.26  E-value=1.7e-11  Score=123.92  Aligned_cols=134  Identities=16%  Similarity=0.199  Sum_probs=88.0

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-cccc--EEE-eCCCc
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD--EVI-ANAPY  138 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD--~vi-~~~p~  138 (420)
                      .+..+++++|.||++|.||+.++++|.+.+|+|+|++.+...-. .+ +..++.+||++|++.+ +.++  .+. ...|-
T Consensus         4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~-~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d   81 (340)
T PRK05379          4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR-SI-KNPFSFEERAQMIRAALAGIDLARVTIRPLRD   81 (340)
T ss_pred             ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC-cC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECCC
Confidence            34678999999999999999999999999999999998754221 22 3458999999999864 3232  222 11121


Q ss_pred             c-cc-HHH---HHHHHh---hcCccEEEEcCCCCCCCCCccHHH-HHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          139 A-IT-EQF---MNRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       139 ~-~~-~~f---l~~ll~---~~~~d~vV~G~D~~~g~~g~~~~~-~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                      . +. .-+   +.....   ..++|++++|.|+.    ....|. ...+.| +..++..+++|+|+||++|..+
T Consensus        82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~----~~~~~~~~f~~~~-~~~~~~~~~~s~T~iR~~~~~~  150 (340)
T PRK05379         82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD----ASSYYLRSFPQWE-LVDVPNTEDLSATEIRDAYFEG  150 (340)
T ss_pred             CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC----CChHHHHhccccc-cccCCcccccCccHHHHHHHcC
Confidence            1 12 212   222221   25788999997762    222232 222333 3356667889999999999865

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=99.26  E-value=3.2e-11  Score=122.03  Aligned_cols=135  Identities=21%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHh--CCeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccEEEe------
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA------  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~l--gd~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vi~------  134 (420)
                      |++++++|+|||+|.||+.++++|.+.  .|++++.+...+   +.|. .+..+.++|++|++. +...+.+..      
T Consensus         1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~   77 (342)
T PRK07152          1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK   77 (342)
T ss_pred             CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence            357899999999999999999999987  388888887655   3344 345556999999963 222222222      


Q ss_pred             CCCccccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC--------------------CCC
Q 014671          135 NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------EGV  191 (420)
Q Consensus       135 ~~p~~~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~--------------------~~I  191 (420)
                      ....++|.+.++.+.+++ |+   ++++|.|.-..-..+..++.+-+...+++++|.                    ..|
T Consensus        78 ~~~~syt~~tl~~l~~~~-p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i  156 (342)
T PRK07152         78 RQNVSYTIDTIKYFKKKY-PNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI  156 (342)
T ss_pred             CCCCCcHHHHHHHHHHhC-CCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence            122345667776665555 44   889999965444455567777777777777663                    249


Q ss_pred             ChHHHHHHHHhc
Q 014671          192 SSTDIVGRILSS  203 (420)
Q Consensus       192 SST~Ir~rI~~~  203 (420)
                      |||+||+++..+
T Consensus       157 SST~IR~~~~~~  168 (342)
T PRK07152        157 SSTKIRKGNLLG  168 (342)
T ss_pred             CHHHHHHHHHcC
Confidence            999999999865

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=99.22  E-value=5.3e-11  Score=105.19  Aligned_cols=127  Identities=26%  Similarity=0.294  Sum_probs=87.9

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc----cccc-c-EEEeCC
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKWV-D-EVIANA  136 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~----~~~V-D-~vi~~~  136 (420)
                      .+...|.++|+||.+|.||..||+.|..+|+.+++|++||+.+..++..++.|.+.|++-|..    .+.- . .+-++.
T Consensus         3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D   82 (158)
T COG1019           3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD   82 (158)
T ss_pred             ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence            456789999999999999999999999999999999999998876666899999999998875    1111 1 333466


Q ss_pred             CccccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHH-hCCe----EEEecc-----CCCCChHHHHHH
Q 014671          137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVGR----YKQIKR-----TEGVSSTDIVGR  199 (420)
Q Consensus       137 p~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk-~~g~----~~~v~r-----~~~ISST~Ir~r  199 (420)
                      ||..+.+       .-..+++|+...-.-+   .-..+.++ +.|.    +..++.     ...+|||.||+-
T Consensus        83 p~G~t~~-------~~~~e~iVVS~ET~~~---Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg  145 (158)
T COG1019          83 PYGPTVE-------DPDFEAIVVSPETYPG---ALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG  145 (158)
T ss_pred             CCCCCCC-------cCceeEEEEccccchh---HHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence            7765532       1246888888653221   22222222 2331    344443     125999999954

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=99.20  E-value=1.3e-10  Score=105.18  Aligned_cols=126  Identities=21%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhcc-cc---ccEEE---eCCCcc
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KW---VDEVI---ANAPYA  139 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~-~~---VD~vi---~~~p~~  139 (420)
                      ++++|+||++|.||+.++++|.+.+|+|+|++.+.+..   |. +..++.++|++|++.. ..   +....   .+.|+.
T Consensus         2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~---~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~   78 (158)
T cd02167           2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR---DDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEY   78 (158)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc---cccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCC
Confidence            57899999999999999999999999999999887632   22 5678999999999853 22   21111   122321


Q ss_pred             c--c---HHHHHHHHhhc---CccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEe--cc-CCCCChHHHHHHHH
Q 014671          140 I--T---EQFMNRLFNEH---KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQI--KR-TEGVSSTDIVGRIL  201 (420)
Q Consensus       140 ~--~---~~fl~~ll~~~---~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v--~r-~~~ISST~Ir~rI~  201 (420)
                      -  -   ...+...+.+.   ++|+++.|+++..     ..+......| +...+  .+ ...+|+|.||+-..
T Consensus        79 ~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~-----~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~  147 (158)
T cd02167          79 PNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEA-----AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF  147 (158)
T ss_pred             chhHHHHHHHHHHHHhhhcCCCCCEEEEccCcch-----hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence            0  1   12233333321   6789999977521     1111122233 33332  23 35799999998644

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes

Probab=99.15  E-value=1.2e-10  Score=103.75  Aligned_cols=121  Identities=22%  Similarity=0.335  Sum_probs=78.9

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcC-CEEEEEEecCccccCCC--CCCCCHHHHHHhhhhc-ccc------ceEEEcCCC
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGSY--HPIMHLHERSLSVLAC-RYV------DEVIIGAPW  328 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~g-d~LiVgV~~D~~v~~~~--~pi~~~~ER~~~v~~~-~~V------D~Vvi~~~~  328 (420)
                      |++.|+||++|.||..+|++|.+++ |.++|||++|+....++  .++++.++|+++++.+ ...      +-+-+.+|+
T Consensus         2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~~   81 (143)
T cd02164           2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDPY   81 (143)
T ss_pred             EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence            7899999999999999999999998 89999999998554432  2699999999888765 221      233345666


Q ss_pred             CchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe----EEEe------CCCCCCCHHHHHH
Q 014671          329 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLL------ESPKSITTTSVAQ  387 (420)
Q Consensus       329 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~~------~~~~~~Stt~Ii~  387 (420)
                      +.+.   ..-..|.+|-..+-..     .+......-++.|-    .+.+      .....+|||.|.+
T Consensus        82 Gpt~---~~~~~d~lVVS~ET~~-----~~~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~  142 (143)
T cd02164          82 GPTG---TDPDLEAIVVSPETYP-----GALKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR  142 (143)
T ss_pred             CCcc---cCCCCCEEEEcHHHhh-----hHHHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence            5542   1234677766543211     12222223344451    1122      2345699998865

The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.

>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]

Probab=99.09  E-value=4.1e-10  Score=100.26  Aligned_cols=88  Identities=25%  Similarity=0.394  Sum_probs=69.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccccEEEeCCCccccHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAPYAITEQ  143 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~vi~~~p~~~~~~  143 (420)
                      ++++++.|+|||+++||+.+|++|.++.|+++|+|..++    .| +|+++++||.+|++.. +..+.|-.. .|   ..
T Consensus         2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~-~f---~~   72 (159)
T COG0669           2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVV-GF---SG   72 (159)
T ss_pred             CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEE-ec---cc
Confidence            568999999999999999999999999999999998765    34 7999999999999852 233333321 12   12


Q ss_pred             HHHHHHhhcCccEEEEcC
Q 014671          144 FMNRLFNEHKIDYIIHGD  161 (420)
Q Consensus       144 fl~~ll~~~~~d~vV~G~  161 (420)
                      .+-++.++.++.++|.|=
T Consensus        73 Llvd~ak~~~a~~ivRGL   90 (159)
T COG0669          73 LLVDYAKKLGATVLVRGL   90 (159)
T ss_pred             HHHHHHHHcCCCEEEEec
Confidence            555566789999999994

>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain

Probab=99.09  E-value=3e-10  Score=105.14  Aligned_cols=125  Identities=13%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cc--cc--eEEEcC-CCC-ch
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RY--VD--EVIIGA-PWE-VT  331 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~--VD--~Vvi~~-~~~-~~  331 (420)
                      .++.|+|||||.||+.++++|.+.+|+|+|+|.+..... .+++.++.+||..|++.+ ..  +|  .|.+.. +.. ..
T Consensus         2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~-~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~~   80 (181)
T cd02168           2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR-NIKNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLYS   80 (181)
T ss_pred             eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC-CCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCCC
Confidence            578999999999999999999999999999998875432 223568999999999875 32  12  333311 111 01


Q ss_pred             HH----HHhh-------cCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHh
Q 014671          332 KD----MITT-------FNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIA  391 (420)
Q Consensus       332 ~~----~i~~-------~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~  391 (420)
                      .+    .+++       .++|+++.|.+++.+.+...      ....-| +..++...++|+|.|.+++..
T Consensus        81 ~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~~~~~~------lfpe~~-~~~~p~~~~iSsT~IR~~i~~  144 (181)
T cd02168          81 DNLWLAEVQQQVLEIAGGSASVGLVGHRKDASSYYLR------SFPQWD-YLEVPNYPDLNATDIRRAYFE  144 (181)
T ss_pred             hHHHHHHHHHhChHhhCCCCcEEEeCCccCCCcccee------ecCCcC-eecCccccccCHHHHHHHHHh
Confidence            11    1111       24688888877643322110      001112 234455567999999999987

N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.08  E-value=1.1e-09  Score=110.73  Aligned_cols=130  Identities=15%  Similarity=0.231  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccc--eEEEcC-CCC
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVD--EVIIGA-PWE  329 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD--~Vvi~~-~~~  329 (420)
                      +..+++++.|+||+||.||+.++++|.+.+|.|+|++.+.......+ +.++.+||..|++.+ +.+|  .|.+.. +..
T Consensus         4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~~~~-~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d~   82 (340)
T PRK05379          4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIK-NPFSFEERAQMIRAALAGIDLARVTIRPLRDS   82 (340)
T ss_pred             ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCCcCC-CCCCHHHHHHHHHHHhhcCCCceEEEEECCCC
Confidence            34689999999999999999999999999999999998764333233 448999999999776 5443  233311 111


Q ss_pred             c-hHH----HHhh-------cCccEEEEcCCcCCCCCCCCCCChHHH--HHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014671          330 V-TKD----MITT-------FNICLVVHGTVSETNTPLTGQSDPYEV--AKSMGIFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       330 ~-~~~----~i~~-------~~~d~vv~G~d~~~~~~~~~~~d~~~~--~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                      . ..+    .++.       -++|+++.|.++..+        ++..  ...-|.. .++..+++|+|.|.++|+.+.
T Consensus        83 ~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~--------~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~~  151 (340)
T PRK05379         83 LYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDAS--------SYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEGR  151 (340)
T ss_pred             CcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCC--------hHHHHhccccccc-cCCcccccCccHHHHHHHcCC
Confidence            1 111    2221       467889999765332        2221  1122322 456677899999999997644

>PRK07143 hypothetical protein; Provisional

Probab=99.07  E-value=5e-09  Score=103.11  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=96.6

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcccc-CCCC-CCCCHHHHHHhhhhccccceEEEcCCC----
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR-GSYH-PIMHLHERSLSVLACRYVDEVIIGAPW----  328 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~-~~~~-pi~~~~ER~~~v~~~~~VD~Vvi~~~~----  328 (420)
                      ..+.|++-|.||-+|.||..+|++|++.++.++|...+++... +++. ++++.+||...+++|. ||.+++-+..    
T Consensus        14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~a   92 (279)
T PRK07143         14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEELQ   92 (279)
T ss_pred             CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHHh
Confidence            3568999999999999999999999999999999888765432 1223 7999999999999986 6888774321    


Q ss_pred             -CchHHHHhh---cCccEEEEcCCcCCCCCCCCCCChHHHHHhCC-eEEEeC----CCCCCCHHHHHHHHHhc
Q 014671          329 -EVTKDMITT---FNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLE----SPKSITTTSVAQRIIAN  392 (420)
Q Consensus       329 -~~~~~~i~~---~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~~~----~~~~~Stt~Ii~RI~~~  392 (420)
                       -.+++|++.   ++++.+|.|.|+....  ...-+... ++..+ .+..++    ....+|||.|.+-|.+.
T Consensus        93 ~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~--~r~G~~~~-L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G  162 (279)
T PRK07143         93 NLSGNDFIEKLTKNQVSFFVVGKDFRFGK--NASWNADD-LKEYFPNVHIVEILKINQQKISTSLLKEFIEFG  162 (279)
T ss_pred             CCCHHHHHHHHHhcCCCEEEECCCcccCC--CCCCCHHH-HHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence             135667665   7999999999987662  12223433 34444 444443    23469999998776544

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=99.03  E-value=3.3e-09  Score=109.54  Aligned_cols=130  Identities=19%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-----hhcCCCCCCcHHHHHHHHhcc-ccccEEEe----
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSGL-KWVDEVIA----  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-----~~~K~~pi~t~eER~~ll~~~-~~VD~vi~----  134 (420)
                      .++++++|+|||+|.||+.+|++|.+++|.|+|+|.+++.-     ...+.+..++.++|.+|++.. +..+.|.+    
T Consensus        52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~  131 (399)
T PRK08099         52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN  131 (399)
T ss_pred             CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            45899999999999999999999999999999999887631     111225688999999999863 33222211    


Q ss_pred             --CC-CccccH----HHHHHHHhh--cCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEec--c-CCCCChHHHHHHHH
Q 014671          135 --NA-PYAITE----QFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRIL  201 (420)
Q Consensus       135 --~~-p~~~~~----~fl~~ll~~--~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r-~~~ISST~Ir~rI~  201 (420)
                        +. +|....    +.+...+.+  .++++++.|.++     +...|  ++..| +...++  | ..+||+|.||+--.
T Consensus       132 ~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~-----d~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~  204 (399)
T PRK08099        132 EEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ-----DAPQY--EEHLGIETVLVDPKRTFMNISGTQIRENPF  204 (399)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC-----ChHHH--HHhcCCceeeeccccccCCcCHHHHhhCHH
Confidence              11 222221    223333333  368999999775     11333  33323 344444  3 34799999998654

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=98.98  E-value=3.6e-09  Score=101.18  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhC--Ce-E-EE----EEecchhhhhcCCCCCCcHHHHHHHHh-ccccccEEE----
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALG--DE-L-VV----GVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVI----  133 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lg--d~-L-iV----gV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD~vi----  133 (420)
                      ..+++|+||++|.||+.++++|.+..  +. + ++    ....++   ..| ....+.++|++|++ ++.....+.    
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~   77 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWIRVDDW   77 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCEEEEeh
Confidence            46789999999999999999998875  32 1 21    122221   123 56789999999998 332222222    


Q ss_pred             --eCCCccccHHHHHHHHhhc
Q 014671          134 --ANAPYAITEQFMNRLFNEH  152 (420)
Q Consensus       134 --~~~p~~~~~~fl~~ll~~~  152 (420)
                        ....+.+|-+.++.+.+++
T Consensus        78 E~~~~~~syT~~TL~~l~~~~   98 (225)
T cd09286          78 ESLQPEWMRTAKVLRHHREEI   98 (225)
T ss_pred             hccCCccccHHHHHHHHHHHh
Confidence              2222445667777766555

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>PLN02388 phosphopantetheine adenylyltransferase

Probab=98.97  E-value=5.7e-09  Score=95.99  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             CCCCCCeEEEEcCccccCCHHHHHHHHHHHhcC-CEEEEEEecCccccCC--CCCCCCHHHHHHhhhhc-cc------cc
Q 014671          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGS--YHPIMHLHERSLSVLAC-RY------VD  320 (420)
Q Consensus       251 ~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g-d~LiVgV~~D~~v~~~--~~pi~~~~ER~~~v~~~-~~------VD  320 (420)
                      .+......|++.|+||.+|.||-.+|++|.+++ +.++||+++|+....+  +..++++++|...+.+. .-      +.
T Consensus        14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~   93 (177)
T PLN02388         14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQ   93 (177)
T ss_pred             CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEE
Confidence            334446789999999999999999999999998 4899999999976542  33899999999888764 21      23


Q ss_pred             eEEEcCCCCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCC-----eEE--Ee--C-CCCCCCHHHHHHHHH
Q 014671          321 EVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-----IFQ--LL--E-SPKSITTTSVAQRII  390 (420)
Q Consensus       321 ~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-----~~~--~~--~-~~~~~Stt~Ii~RI~  390 (420)
                      -+-+.+|++.+.   ..-++|.+|-+.+-..+     +......-+..|     +++  .+  + ....+|||.|.+|..
T Consensus        94 i~~i~D~~Gpt~---~~~~~d~LVVS~ET~~g-----~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~  165 (177)
T PLN02388         94 AEPIIDPYGPSI---VDENLEAIVVSKETLPG-----GLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEA  165 (177)
T ss_pred             EEEecCCCCCcc---cCCCCCEEEEcHhHhhh-----HHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHH
Confidence            444567776542   23457778777642221     221222333444     221  11  1 245799999999987


Q ss_pred             hch
Q 014671          391 ANH  393 (420)
Q Consensus       391 ~~~  393 (420)
                      ++.
T Consensus       166 ~~~  168 (177)
T PLN02388        166 EKA  168 (177)
T ss_pred             HHH
Confidence            665

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.97  E-value=3.7e-10  Score=95.03  Aligned_cols=57  Identities=23%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~  126 (420)
                      +++.|+||++|.||+.++++|++++|.+++++..++....  ..++.+.++|.++++++
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~--~~~~~~~~~R~~~l~~~   58 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV--WQDPHELEERKESIEED   58 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc--cCChHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988875432  23689999999999985

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=98.97  E-value=5.4e-09  Score=100.70  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--CeE-EEEEecchhhhhcCCCCCCcHHHHHHHHh-ccccccEE------Ee
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DEL-VVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEV------IA  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~L-iVgV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD~v------i~  134 (420)
                      ....+.+|+||++|.||+.+++.|++.-  |.+ +|.+-..+.-...+.+...+.++|++|++ ++.....+      +.
T Consensus        22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~  101 (236)
T PLN02945         22 RVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMVDPWEAR  101 (236)
T ss_pred             eEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEecHHHhC
Confidence            3456778899999999999999988864  332 22222222111112236779999999997 32222211      22


Q ss_pred             CCCccccHHHHHHHHhhcC-------c--c-EEEEcCCC
Q 014671          135 NAPYAITEQFMNRLFNEHK-------I--D-YIIHGDDP  163 (420)
Q Consensus       135 ~~p~~~~~~fl~~ll~~~~-------~--d-~vV~G~D~  163 (420)
                      ...++.|.+.++.+.++++       +  + ++++|.|.
T Consensus       102 ~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~  140 (236)
T PLN02945        102 QSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL  140 (236)
T ss_pred             CCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence            2224456677766655552       2  3 78999983

>PRK13670 hypothetical protein; Provisional

Probab=98.96  E-value=2.2e-09  Score=110.28  Aligned_cols=104  Identities=19%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCC-eEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCcccc----H
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGD-ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT----E  142 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd-~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~----~  142 (420)
                      +=++==|||+|.||+.+|++|++.+. .++++|-|-..+.+ ..+++++.++|.+++..+ +||.|++ .||.+.    +
T Consensus         4 ~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~sae   80 (388)
T PRK13670          4 TGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQSAD   80 (388)
T ss_pred             eEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCCHH
Confidence            33444699999999999999999762 34445555544433 226699999999999997 9999998 566544    4


Q ss_pred             HHHHH---HHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCe
Q 014671          143 QFMNR---LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       143 ~fl~~---ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~  181 (420)
                      +|+..   ++++++++.||+|.|       .++.+.|++.++
T Consensus        81 ~F~~~aV~iL~~l~v~~lv~G~e-------~g~~~~L~~~~~  115 (388)
T PRK13670         81 FFAEGAVSILDALGVDSLVFGSE-------SGDIEDFQKIAK  115 (388)
T ss_pred             HHHHhHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHHH
Confidence            78887   778899999999999       344555655543

>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.94  E-value=8.5e-09  Score=94.91  Aligned_cols=124  Identities=20%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-c--cc--ceEEEcC-C-CCc
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-R--YV--DEVIIGA-P-WEV  330 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~--~V--D~Vvi~~-~-~~~  330 (420)
                      ++++.|+||+||.||+.++++|.+.+|.|+|+|.+...-. ++.+.++.+||..|++.. .  .+  +.+.+.. + ...
T Consensus         2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~~~-~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~~   80 (174)
T PRK01153          2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQESH-TLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIEF   80 (174)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcch
Confidence            4788999999999999999999999999999997543111 234457999999988753 2  22  2333321 2 222


Q ss_pred             hHHHHhhc-----CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeC--CCCCCCHHHHHHHHHhch
Q 014671          331 TKDMITTF-----NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLE--SPKSITTTSVAQRIIANH  393 (420)
Q Consensus       331 ~~~~i~~~-----~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~--~~~~~Stt~Ii~RI~~~~  393 (420)
                      ...+....     .+|+++-|..+..           ......|. ....+  ....+|+|.|.++|.++.
T Consensus        81 ~~~w~~~v~~~~~~~d~v~~~~~y~~-----------~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g~  140 (174)
T PRK01153         81 NSIWVSHVESYTPPFDVVYTGNPLVA-----------RLFREAGYEVRQPPMFNREEYSGTEIRRRMIEGD  140 (174)
T ss_pred             HHHHHHHHHHhCCCCCEEEECChHHH-----------HhchhhCCeEecCCccccCCCCHHHHHHHHHcCC
Confidence            22233323     5588777742211           11223443 23333  345799999999998654

>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins

Probab=98.90  E-value=1.5e-08  Score=91.91  Aligned_cols=129  Identities=18%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEE---cCCCCc---
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVII---GAPWEV---  330 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi---~~~~~~---  330 (420)
                      +.++.|+|||+|.||+.++++|.+.+|.|+|++.++..-+ .+++.++.++|..|++.. +.-+.+.+   ..+...   
T Consensus         1 igl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~~-~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~~   79 (158)
T cd02167           1 IGIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTRD-DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEYP   79 (158)
T ss_pred             CEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCccc-ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCc
Confidence            3578999999999999999999999999999999886332 344678999999888664 55344444   111111   


Q ss_pred             --h---H----HHHhhc---CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeC--C-CCCCCHHHHHHHHHhchH
Q 014671          331 --T---K----DMITTF---NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLE--S-PKSITTTSVAQRIIANHE  394 (420)
Q Consensus       331 --~---~----~~i~~~---~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~--~-~~~~Stt~Ii~RI~~~~~  394 (420)
                        -   .    ..+.+.   ++|+++-|.++...        .+....+.|. ...++  + ...+|.|.|.+-..++++
T Consensus        80 ~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~--------~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w~  151 (158)
T cd02167          80 NGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAA--------FELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYWY  151 (158)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchh--------hhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHHH
Confidence              1   1    122221   56888877654221        1111234454 22222  2 457999999988777665


Q ss_pred             h
Q 014671          395 A  395 (420)
Q Consensus       395 ~  395 (420)
                      .
T Consensus       152 ~  152 (158)
T cd02167         152 H  152 (158)
T ss_pred             h
Confidence            4

NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase

>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.83  E-value=6.1e-08  Score=91.13  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEc------C
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIG------A  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~------~  326 (420)
                      ++++++.|+||++|.||+.++++|++..  |.+++.++.....+ ...+.++.++|+.|++. ++..+.+.+.      .
T Consensus         4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k-~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~   82 (203)
T PRK00071          4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHK-PQKPLAPLEHRLAMLELAIADNPRFSVSDIELERP   82 (203)
T ss_pred             cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhCC
Confidence            5799999999999999999999999866  88888777664222 22368899999988854 5777766664      1


Q ss_pred             CCCchHHHHhhc---Ccc---EEEEcCCc
Q 014671          327 PWEVTKDMITTF---NIC---LVVHGTVS  349 (420)
Q Consensus       327 ~~~~~~~~i~~~---~~d---~vv~G~d~  349 (420)
                      ....|.+.++.+   -|+   +++.|.|.
T Consensus        83 ~~syT~~tl~~l~~~~p~~~~~fiiG~D~  111 (203)
T PRK00071         83 GPSYTIDTLRELRARYPDVELVFIIGADA  111 (203)
T ss_pred             CCCCHHHHHHHHHHHCCCCcEEEEEcHHH
Confidence            123345555443   355   67889874

>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.83  E-value=4.3e-08  Score=90.22  Aligned_cols=131  Identities=13%  Similarity=0.070  Sum_probs=83.1

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-ccc--ceEEEcCC-----
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYV--DEVIIGAP-----  327 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~V--D~Vvi~~~-----  327 (420)
                      ++|.+..|+|||+|.||+.+.+++ ...|.+++..+...   ..+++..+.++|+.|++.+ +..  +.+.+...     
T Consensus         2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~   77 (174)
T PRK08887          2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY   77 (174)
T ss_pred             CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---cccCCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence            478999999999999999999996 46799888865521   1112778999999988654 432  34555221     


Q ss_pred             ----CCchHHHHhhcC---cc---EEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014671          328 ----WEVTKDMITTFN---IC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       328 ----~~~~~~~i~~~~---~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                          ...|.+.++.++   |+   +++.|.|...+ +..|.. ...+.+... +...++..++|+|.|.+++..++
T Consensus        78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~-l~~W~~-~~~i~~~~~-l~~~~~~~~ISST~IR~~l~~g~  150 (174)
T PRK08887         78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLK-FAKFYK-ADEITQRWT-VMACPEKVPIRSTDIRNALQNGK  150 (174)
T ss_pred             cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHH-HHHhCC-HHHHHhhCe-EEEeCCCCCcCHHHHHHHHHcCC
Confidence                112334444432   32   45669875443 222322 223333333 44446667899999999997654

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=98.83  E-value=2.1e-09  Score=90.48  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC  316 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~  316 (420)
                      +++.|+||++|.||+.++++|++++|.+++++..+..... +.++.+.++|..+++++
T Consensus         2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~~~~~~~~~R~~~l~~~   58 (105)
T cd02156           2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-WQDPHELEERKESIEED   58 (105)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-cCChHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999998876542 33799999999999988

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.83  E-value=1.7e-08  Score=94.18  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=51.2

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL  126 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~  126 (420)
                      ....+++|-|.++|+||+.+|++|.+.||+|+|++.|...-...  +..+|..||.+|++..
T Consensus         4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a   63 (196)
T PRK13793          4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN   63 (196)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence            45789999999999999999999999999999999996643211  4578899999999874

>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase

Probab=98.82  E-value=4.9e-08  Score=90.86  Aligned_cols=91  Identities=15%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEEcC------CC
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA------PW  328 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi~~------~~  328 (420)
                      |+++.|+|||+|.||+.+++.|++.+  |.|+|.+..+...  ++.+.++.++|++|++.+ +....+.+..      ..
T Consensus         1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~--k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~   78 (192)
T cd02165           1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPH--KPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP   78 (192)
T ss_pred             CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence            46889999999999999999999998  9999988766422  224788999999998754 5556666631      12


Q ss_pred             CchHHHHhhc---Ccc---EEEEcCCcC
Q 014671          329 EVTKDMITTF---NIC---LVVHGTVSE  350 (420)
Q Consensus       329 ~~~~~~i~~~---~~d---~vv~G~d~~  350 (420)
                      ..|.+.++.+   -|+   +++-|.|.-
T Consensus        79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l  106 (192)
T cd02165          79 SYTIDTLEELRERYPNAELYFIIGSDNL  106 (192)
T ss_pred             CCHHHHHHHHHHhccCCCEEEEEcHHHh
Confidence            3344444443   343   567888743

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.

>COG1019 Predicted nucleotidyltransferase [General function prediction only]

Probab=98.79  E-value=6.6e-09  Score=92.00  Aligned_cols=125  Identities=22%  Similarity=0.329  Sum_probs=84.5

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhc----ccc-c-eEEEcCC
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLAC----RYV-D-EVIIGAP  327 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~----~~V-D-~Vvi~~~  327 (420)
                      +..+|.+.|+||.+|.||-.+|+.|-.+|+.+++|+++|+.+++ ++.++.|++.|...|...    +.= + -|-+.+|
T Consensus         4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~Dp   83 (158)
T COG1019           4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDDP   83 (158)
T ss_pred             cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecCC
Confidence            35689999999999999999999999999999999999999998 556999999999776552    211 1 3445777


Q ss_pred             CCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe----EEEe-----CCCCCCCHHHHHH
Q 014671          328 WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLL-----ESPKSITTTSVAQ  387 (420)
Q Consensus       328 ~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~~-----~~~~~~Stt~Ii~  387 (420)
                      ++.+.   ..-..|++|-..+-.     +........-.+.|.    +..+     .....+|||.|.+
T Consensus        84 ~G~t~---~~~~~e~iVVS~ET~-----~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrr  144 (158)
T COG1019          84 YGPTV---EDPDFEAIVVSPETY-----PGALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRR  144 (158)
T ss_pred             CCCCC---CcCceeEEEEccccc-----hhHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhh
Confidence            76542   222456666554311     111222223334552    2222     2335799998875

>PRK13671 hypothetical protein; Provisional

Probab=98.76  E-value=2.9e-08  Score=98.31  Aligned_cols=88  Identities=25%  Similarity=0.403  Sum_probs=70.1

Q ss_pred             ecccCcCCHHHHHHHHHHHHh--CCeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhccccccEEEeCCCcccc----HH
Q 014671           71 DGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT----EQ  143 (420)
Q Consensus        71 ~G~FD~lH~GH~~lL~qA~~l--gd~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~----~~  143 (420)
                      +-.|||+|.||..++++|++.  +|.+++++..++   ..|+ +.+++.++|++|+..+ +||.|++ -|+.+.    +.
T Consensus         6 IaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sAe~   80 (298)
T PRK13671          6 IAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAAHI   80 (298)
T ss_pred             EeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhchHH
Confidence            447999999999999999997  488888887776   3455 6677999999999998 9999997 454333    23


Q ss_pred             HH---HHHHhhcCccEEEEcCCC
Q 014671          144 FM---NRLFNEHKIDYIIHGDDP  163 (420)
Q Consensus       144 fl---~~ll~~~~~d~vV~G~D~  163 (420)
                      |-   -.++..+++|.++.|.++
T Consensus        81 FA~gaV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         81 FAKGAIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCC
Confidence            43   237788999999999764

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.75  E-value=1.4e-07  Score=95.22  Aligned_cols=129  Identities=21%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEE--EeCCCcccc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEV--IANAPYAIT  141 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~v--i~~~p~~~~  141 (420)
                      .+++.+.|+|||+|+||+.++++|.+++|.++|.|..+      + +++++.++|++|++. ++..+.|  +...+|-++
T Consensus       139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is  211 (332)
T TIGR00124       139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS  211 (332)
T ss_pred             CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence            47899999999999999999999999999999999632      2 579999999999985 2222212  222223221


Q ss_pred             H------------------------HHHHHHHhhcCccEEEEcCCCCCCCCCccHHH-HHH---------hCCeEEEecc
Q 014671          142 E------------------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-LAK---------KVGRYKQIKR  187 (420)
Q Consensus       142 ~------------------------~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~-~lk---------~~g~~~~v~r  187 (420)
                      .                        -|-+.+...+++..-.+|+.+..-.  +..|. .++         ..-+..+++|
T Consensus       212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R  289 (332)
T TIGR00124       212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR  289 (332)
T ss_pred             cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence            0                        1223344568888899999875422  23344 233         1235678887


Q ss_pred             C----CCCChHHHHHHHHh
Q 014671          188 T----EGVSSTDIVGRILS  202 (420)
Q Consensus       188 ~----~~ISST~Ir~rI~~  202 (420)
                      .    ..+|.|.||+.|.+
T Consensus       290 ~~~~~~~~SASaIR~~L~~  308 (332)
T TIGR00124       290 KLAAGGPISASTVRELLAK  308 (332)
T ss_pred             ecCCCCeeCHHHHHHHHHc
Confidence            3    24999999999964

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=98.73  E-value=1.5e-08  Score=99.61  Aligned_cols=113  Identities=20%  Similarity=0.257  Sum_probs=86.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CC--CCCCcHHHHHHHHhccccccEEEeCCCcccc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT  141 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~  141 (420)
                      --.|.+.|.   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.+.++|+++++.+ +||.++....-.+.
T Consensus        24 ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~   99 (277)
T cd00560          24 IGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMY   99 (277)
T ss_pred             EEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcC
Confidence            346789999   99999999999999999888888888753221 22  4588899999999997 89999642211222


Q ss_pred             -HHHHHHHHhhcCccEEEEcC----------------------C-CCCCCCCccHHHHHHhCCe
Q 014671          142 -EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       142 -~~fl~~ll~~~~~d~vV~G~----------------------D-~~~g~~g~~~~~~lk~~g~  181 (420)
                       ++|+..+.+..++..+++|.                      | +.||.++.+....+++.++
T Consensus       100 p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~  163 (277)
T cd00560         100 PEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVR  163 (277)
T ss_pred             CCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHH
Confidence             25554233457889999999                      9 9999999999888888754

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.65  E-value=1.7e-07  Score=96.87  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccc-----cC-CCCCCCCHHHHHHhhhhc-cccceEEE
Q 014671          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-----RG-SYHPIMHLHERSLSVLAC-RYVDEVII  324 (420)
Q Consensus       252 ~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v-----~~-~~~pi~~~~ER~~~v~~~-~~VD~Vvi  324 (420)
                      |....+++++.|+||++|.||+.++++|.+++|.|+|+|.++..-     +. +..+.++.++|..+++.. +..+.|.+
T Consensus        48 ~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v  127 (399)
T PRK08099         48 PRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKI  127 (399)
T ss_pred             hhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEE
Confidence            444567999999999999999999999999999999999987621     11 234789999999888765 67665655


Q ss_pred             cC----C---C--C--c----hHHHHhh--cCccEEEEcCCcCCCCCCCCCCChHHHHHhCC-eEEEeCC---CCCCCHH
Q 014671          325 GA----P---W--E--V----TKDMITT--FNICLVVHGTVSETNTPLTGQSDPYEVAKSMG-IFQLLES---PKSITTT  383 (420)
Q Consensus       325 ~~----~---~--~--~----~~~~i~~--~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G-~~~~~~~---~~~~Stt  383 (420)
                      ..    +   +  +  .    ....+..  .++|+++-|.++..        +.|  .+..| .++.++.   ..++|.|
T Consensus       128 ~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d~--------~~~--~~~~~~~~~~vd~~r~~~~iSaT  197 (399)
T PRK08099        128 HAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQDA--------PQY--EEHLGIETVLVDPKRTFMNISGT  197 (399)
T ss_pred             EecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCCh--------HHH--HHhcCCceeeeccccccCCcCHH
Confidence            31    1   1  0  0    1112322  25788888865421        122  23334 2333432   2467888


Q ss_pred             HHHHHHHhchHh
Q 014671          384 SVAQRIIANHEA  395 (420)
Q Consensus       384 ~Ii~RI~~~~~~  395 (420)
                      .|.+--.++++.
T Consensus       198 ~IR~~p~~~w~~  209 (399)
T PRK08099        198 QIRENPFRYWEY  209 (399)
T ss_pred             HHhhCHHHHHHh
Confidence            887776666554

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.63  E-value=1.4e-07  Score=95.08  Aligned_cols=68  Identities=16%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccce-EEE
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDE-VII  324 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~-Vvi  324 (420)
                      ++++++.|+|||+|.||+.++++|.+++|.|+|.+.....-. ++.+.++.++|+.+++. |+.... |.+
T Consensus         1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~~v~v   70 (325)
T TIGR01526         1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYDS-KAKRPPPVQDRLRWLREIFKYQKNQIFI   70 (325)
T ss_pred             CcEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcCc-cCCCCCCHHHHHHHHHHHhccCCCeEEE
Confidence            358899999999999999999999999999999998732111 34588999999998854 576666 554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=98.61  E-value=3.1e-08  Score=97.67  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CC--CCCCcHHHHHHHHhccccccEEEeCCCcccc-H
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E  142 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~-~  142 (420)
                      -|.+.|+   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.|.++|.++++.+ +||.++....-.+. +
T Consensus        26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~  101 (281)
T PRK00380         26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQ  101 (281)
T ss_pred             EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCc
Confidence            4567777   99999999999999999888888777753221 22  4588999999999997 89999874221222 2


Q ss_pred             HHHHHHHhhcCccEEEEcC----------------------CC-CCCCCCccHHHHHHhCCe
Q 014671          143 QFMNRLFNEHKIDYIIHGD----------------------DP-CLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~----------------------D~-~~g~~g~~~~~~lk~~g~  181 (420)
                      +|...++.. ++..+++|.                      |+ .||.++.+....+++.++
T Consensus       102 ~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~  162 (281)
T PRK00380        102 GLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVA  162 (281)
T ss_pred             cceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHH
Confidence            454433222 267889999                      99 899999988888877653

>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase

Probab=98.61  E-value=5.2e-07  Score=84.18  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=60.0

Q ss_pred             EcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcC------CCCch
Q 014671          261 IDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA------PWEVT  331 (420)
Q Consensus       261 ~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~------~~~~~  331 (420)
                      ..|+|||+|.||+.++++|++..  |.+++..+.+...+ ......+.++|++|++ +++..+.+.+..      ....|
T Consensus         2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k-~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT   80 (193)
T TIGR00482         2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHK-KTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPSYT   80 (193)
T ss_pred             ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCCCH
Confidence            57999999999999999999875  77777666554222 1224579999999986 567666666642      12234


Q ss_pred             HHHHhhc---Ccc---EEEEcCCc
Q 014671          332 KDMITTF---NIC---LVVHGTVS  349 (420)
Q Consensus       332 ~~~i~~~---~~d---~vv~G~d~  349 (420)
                      .+.++.+   -|+   +++-|.|.
T Consensus        81 ~~tl~~l~~~~p~~~~~~iiG~D~  104 (193)
T TIGR00482        81 IDTLKHLKKKYPDVELYFIIGADA  104 (193)
T ss_pred             HHHHHHHHHHCCCCeEEEEEcHHH
Confidence            4544443   243   56889874

This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.

>cd02169 Citrate_lyase_ligase Citrate lyase ligase

Probab=98.56  E-value=3.8e-07  Score=90.72  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCC----
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWE----  329 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~----  329 (420)
                      .++++-+-|+|||+|.||+.++++|.+.+|.++|.+-..      +.+.++.++|+++++. ++..+.+.+....+    
T Consensus       113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~  186 (297)
T cd02169         113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS  186 (297)
T ss_pred             CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence            468999999999999999999999999999988888653      2578999999988865 34444333321110    


Q ss_pred             ----------------------chHHHH----hhcCccEEEEcCCcCCCCCCCCCCChHHHHHh---CCe-EEEeC----
Q 014671          330 ----------------------VTKDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVAKS---MGI-FQLLE----  375 (420)
Q Consensus       330 ----------------------~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~---~G~-~~~~~----  375 (420)
                                            .+.+|+    +++++..++-|.|+....- ..++  ....+.   .|. +..++    
T Consensus       187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~-r~G~--~~l~~~~~~~gf~v~~v~~~~~  263 (297)
T cd02169         187 SATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVT-AIYN--QTMQEELLSPAIEVIEIERKKY  263 (297)
T ss_pred             cccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCc-chhH--HHHHHhcccCCCEEEEeccccc
Confidence                                  123344    4578999999999877631 2222  222222   243 22332    


Q ss_pred             CCCCCCHHHHHHHHHhchHh
Q 014671          376 SPKSITTTSVAQRIIANHEA  395 (420)
Q Consensus       376 ~~~~~Stt~Ii~RI~~~~~~  395 (420)
                      ....+|||.|.+-|.+..-.
T Consensus       264 ~g~~ISST~IR~~l~~G~v~  283 (297)
T cd02169         264 DGQPISASTVRQLLKEGNLE  283 (297)
T ss_pred             CCcEEcHHHHHHHHHcCCHH
Confidence            23569999999888766544

Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.

>PRK13671 hypothetical protein; Provisional

Probab=98.53  E-value=2.4e-07  Score=91.83  Aligned_cols=85  Identities=16%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             CccccCCHHHHHHHHHHHhc--CCEEEEEEecCccccCCCCCCCCHHHHHHhhhhccccceEEEcC-CCC-c--------
Q 014671          263 GAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGA-PWE-V--------  330 (420)
Q Consensus       263 G~FDl~H~GHi~~L~~Ak~~--gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~-~~~-~--------  330 (420)
                      -+|||||.||+.++++|++.  +|.+|+....|. +.+|..++++..+|++|++.+ .||-|+--+ ++. .        
T Consensus         7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~qrg~pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~FA~g   84 (298)
T PRK13671          7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-TQRGEIAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIFAKG   84 (298)
T ss_pred             eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-CCCCCCCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHHHHH
Confidence            36999999999999999997  588888776665 444555777999999999998 799998421 111 1        


Q ss_pred             hHHHHhhcCccEEEEcCCc
Q 014671          331 TKDMITTFNICLVVHGTVS  349 (420)
Q Consensus       331 ~~~~i~~~~~d~vv~G~d~  349 (420)
                      ...++..+++|.++-|.++
T Consensus        85 aV~lL~~lgvd~l~FGsE~  103 (298)
T PRK13671         85 AIKKLNKEKIDKLIFGSES  103 (298)
T ss_pred             HHHHHHHcCCCEEEECCCC
Confidence            3568889999999999875

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=98.52  E-value=1.8e-07  Score=94.18  Aligned_cols=58  Identities=24%  Similarity=0.124  Sum_probs=49.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~  125 (420)
                      ++++++|+|||+|.||+.++++|.+++|+|+|++.+.+..  .|..+..+.++|++|++.
T Consensus         2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~--~~~~~~~~~~~R~~~l~~   59 (325)
T TIGR01526         2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYD--SKAKRPPPVQDRLRWLRE   59 (325)
T ss_pred             cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcC--ccCCCCCCHHHHHHHHHH
Confidence            4789999999999999999999999999999999774311  133678899999999975

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated

Probab=98.51  E-value=8.7e-07  Score=89.85  Aligned_cols=133  Identities=19%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhc--CCEEEEEEecCccccCCCC-CCCCHHHHHHhhh-hccccceEEEcC-----
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRGSYH-PIMHLHERSLSVL-ACRYVDEVIIGA-----  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~--gd~LiVgV~~D~~v~~~~~-pi~~~~ER~~~v~-~~~~VD~Vvi~~-----  326 (420)
                      ++|++..|+|||+|.||+.+.++|.+.  .|.+++..+.+.--  ++. +..+.++|++|++ +++..+.+.+..     
T Consensus         1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~--K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~   78 (342)
T PRK07152          1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPF--KKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKR   78 (342)
T ss_pred             CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--CCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhC
Confidence            468999999999999999999999975  48888777654321  333 4555689998884 456656666521     


Q ss_pred             -CCCchHHHH---hhcCcc---EEEEcCCcCCCCCCCCCCChHHHHHhCCeEE------------------EeCC-CCCC
Q 014671          327 -PWEVTKDMI---TTFNIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQ------------------LLES-PKSI  380 (420)
Q Consensus       327 -~~~~~~~~i---~~~~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~------------------~~~~-~~~~  380 (420)
                       ....|.+.+   ++.-|+   +++-|.|...+ +..|. +...+.+..+.++                  .++. ..++
T Consensus        79 ~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~-l~~W~-~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i  156 (342)
T PRK07152         79 QNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEK-FKKWK-NIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI  156 (342)
T ss_pred             CCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhh-ccccc-CHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence             112233433   333354   77889885443 22222 2333333332211                  1211 2469


Q ss_pred             CHHHHHHHHHhc
Q 014671          381 TTTSVAQRIIAN  392 (420)
Q Consensus       381 Stt~Ii~RI~~~  392 (420)
                      |||+|.+|+..+
T Consensus       157 SST~IR~~~~~~  168 (342)
T PRK07152        157 SSTKIRKGNLLG  168 (342)
T ss_pred             CHHHHHHHHHcC
Confidence            999999998765

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.51  E-value=7.3e-07  Score=81.49  Aligned_cols=60  Identities=23%  Similarity=0.308  Sum_probs=51.5

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~  125 (420)
                      ++++.++.|.|-++|.||+++++.|.+..|+|+|++.|+..-..  ...-+|..||..|++.
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t--~~nPfTagER~~mi~~   61 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHT--LKNPFTAGERIPMIRD   61 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccc--ccCCCCccchhHHHHH
Confidence            46789999999999999999999999999999999999874322  1456788999999884

>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain

Probab=98.46  E-value=1.9e-06  Score=79.95  Aligned_cols=122  Identities=14%  Similarity=0.116  Sum_probs=79.7

Q ss_pred             ccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEEcCC-------CC------
Q 014671          264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAP-------WE------  329 (420)
Q Consensus       264 ~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi~~~-------~~------  329 (420)
                      .|||+|.||++++++|.+.+|.++|.+.+.      +.+.++.++|.+|++.. +..+.|.+...       .+      
T Consensus         7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~~~~   80 (182)
T smart00764        7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE------DASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSYFL   80 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCceEEEEEeC------CCCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChhhhc
Confidence            699999999999999999999988888765      24678999999888664 54443333111       00      


Q ss_pred             -------------chHHHH----hhcCccEEEEcCCcCCCCCCCCCCChHHHH--HhCCe-EEEeCC----CCCCCHHHH
Q 014671          330 -------------VTKDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVA--KSMGI-FQLLES----PKSITTTSV  385 (420)
Q Consensus       330 -------------~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~--k~~G~-~~~~~~----~~~~Stt~I  385 (420)
                                   .+++|+    +++++..++-|.|+..+.- ..+ +...+.  ...|. ...+++    ...+|+|.|
T Consensus        81 ~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~-~~G-~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST~I  158 (182)
T smart00764       81 KEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVT-AIY-NQTMKQTLLSPAIEVVEIERKKANGQPISASTV  158 (182)
T ss_pred             CchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCC-Ccc-CHHHHHHHhhCCCEEEEEecccCCCcEECHHHH
Confidence                         123344    4589999999999877632 222 222221  23343 334433    345899999


Q ss_pred             HHHHHhch
Q 014671          386 AQRIIANH  393 (420)
Q Consensus       386 i~RI~~~~  393 (420)
                      .+-|.+..
T Consensus       159 R~~L~~G~  166 (182)
T smart00764      159 RKLLKEGN  166 (182)
T ss_pred             HHHHHcCC
Confidence            88775443

Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.

>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.43  E-value=1.8e-06  Score=81.06  Aligned_cols=95  Identities=16%  Similarity=0.107  Sum_probs=63.3

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCC-CCCCCHHHHHHhh-hhccccceEEEc-----
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSY-HPIMHLHERSLSV-LACRYVDEVIIG-----  325 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~-~pi~~~~ER~~~v-~~~~~VD~Vvi~-----  325 (420)
                      ++++++..|+|||.|.||+.+.++|.+.-  |.|+.-.+...-  .++ ++.-+.++|..|+ ++++..+...+.     
T Consensus         2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p--~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~   79 (197)
T COG1057           2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPP--HKKKKELASAEHRLAMLELAIEDNPRFEVSDREIK   79 (197)
T ss_pred             CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCC--CCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHH
Confidence            47899999999999999999999998765  555544443321  133 4799999999777 556666553331     


Q ss_pred             C-CCCchHH---HHh-hcCccE---EEEcCCcCC
Q 014671          326 A-PWEVTKD---MIT-TFNICL---VVHGTVSET  351 (420)
Q Consensus       326 ~-~~~~~~~---~i~-~~~~d~---vv~G~d~~~  351 (420)
                      . ....|.+   .++ +++||.   ++-|.|.-.
T Consensus        80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~  113 (197)
T COG1057          80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLA  113 (197)
T ss_pred             cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhh
Confidence            1 1122333   344 677873   789987433

>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional

Probab=98.43  E-value=4.7e-07  Score=84.58  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=51.1

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC  316 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~  316 (420)
                      ..+.++.|.|.|||.||++.+++|.+.+|+|||||.|..... ..+.-|+..||.+|+...
T Consensus         4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~-t~~NPFTa~ER~~MI~~a   63 (196)
T PRK13793          4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMER-NIKNPFLAIEREQMILSN   63 (196)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCC-CCCCCCCHHHHHHHHHHh
Confidence            467899999999999999999999999999999999965332 334678999999888665

>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase

Probab=98.42  E-value=5.5e-07  Score=90.94  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEc
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIG  325 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~  325 (420)
                      +++++..+.|+|||||.||+.++++|.+++|.++|.|..+      +++.++.++|..+++. ++..+.|.+.
T Consensus       137 ~~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~~~~f~~~~R~~~v~~~~~~~~nv~v~  203 (332)
T TIGR00124       137 PGNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------DASLFSYDERFALVKQGIQDLSNVTVH  203 (332)
T ss_pred             CCCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------CCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            3468999999999999999999999999999999999753      2579999999988865 4666666553

ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.42  E-value=6e-07  Score=85.32  Aligned_cols=134  Identities=25%  Similarity=0.284  Sum_probs=85.4

Q ss_pred             cCCCCceEEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCC--CCCCcHHHHHHHHhc----ccc---c
Q 014671           60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSG----LKW---V  129 (420)
Q Consensus        60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~ll~~----~~~---V  129 (420)
                      ++..+..++..+|+||-+|.||.-+|..|..++ |+++|||+.|+.+.+ |.  ..+-|.++|++.+..    ++.   |
T Consensus       137 ~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~l~~  215 (293)
T KOG3351|consen  137 GPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPDLNV  215 (293)
T ss_pred             cchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCCceE
Confidence            445567789999999999999999999999998 899999998887643 33  468899999998875    221   3


Q ss_pred             cEEEeCCCccccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCe--EEEeccC---CCCChHHHHHHHH
Q 014671          130 DEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKRT---EGVSSTDIVGRIL  201 (420)
Q Consensus       130 D~vi~~~p~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~--~~~v~r~---~~ISST~Ir~rI~  201 (420)
                      +.+=+-.||..+-       ..-..+.+|+...-..|...-.....-+...+  +..+..-   +.+|+|++++.-.
T Consensus       216 ~~vpi~Dp~GPt~-------~d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv  285 (293)
T KOG3351|consen  216 RVVPIHDPFGPTI-------TDPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV  285 (293)
T ss_pred             EEEecccCCCCCc-------cCCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence            3333345554331       11245678887765444322211111111111  3334333   3489999887544

>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional

Probab=98.28  E-value=1.3e-05  Score=77.63  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhhh
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA  315 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~  315 (420)
                      .++|.+..|+||++|.||+.+.++|.+..  |.+++..+.+.-   .+.+..+.++|++|++.
T Consensus        21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K~~~~~~~~Rl~M~~l   80 (243)
T PRK06973         21 PRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QKADVSAAEHRLAMTRA   80 (243)
T ss_pred             CceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CCCCCCCHHHHHHHHHH
Confidence            35799999999999999999999998764  777777665531   23567899999998853

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=98.20  E-value=6.9e-06  Score=81.46  Aligned_cols=132  Identities=13%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcC-----CEEEEEEecCccc--cCCC-CCCCCHHHHHHhhhhccccceEEEcCCC--
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIV--RGSY-HPIMHLHERSLSVLACRYVDEVIIGAPW--  328 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~g-----d~LiVgV~~D~~v--~~~~-~pi~~~~ER~~~v~~~~~VD~Vvi~~~~--  328 (420)
                      |++-|.||-+|.||-.+|++|++.+     ...++.....+..  .... .++++.+||...++++. ||.+++-+..  
T Consensus         1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~~F~~~   79 (288)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVVVFDEE   79 (288)
T ss_pred             CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEeCCCHH
Confidence            4677999999999999999888653     3345544443321  1111 24999999999999985 8988885431  


Q ss_pred             ---CchHHHHh-----hcCccEEEEcCCcCCCCCCCCCCChHHHH---HhCCeEEEe-C---CCCCCCHHHHHHHHHhch
Q 014671          329 ---EVTKDMIT-----TFNICLVVHGTVSETNTPLTGQSDPYEVA---KSMGIFQLL-E---SPKSITTTSVAQRIIANH  393 (420)
Q Consensus       329 ---~~~~~~i~-----~~~~d~vv~G~d~~~~~~~~~~~d~~~~~---k~~G~~~~~-~---~~~~~Stt~Ii~RI~~~~  393 (420)
                         -.+++|++     ++++..+|.|.|+....-  ..-+...+.   +..|..+.+ +   ....+|||.|.+-|.+..
T Consensus        80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~--~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G~  157 (288)
T TIGR00083        80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHD--RQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNGD  157 (288)
T ss_pred             HHcCCHHHHHHHHHHhccCCcEEEECCCccCCCC--CCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcCC
Confidence               13444543     478999999999876521  122332222   233432222 1   225699999988776544

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic

Probab=98.17  E-value=1.4e-05  Score=76.50  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCC--E--EEEEEecCcccc-CCCCCCCCHHHHHHhhh-hccccceEEEc
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGD--F--LLVGIYTDQIVR-GSYHPIMHLHERSLSVL-ACRYVDEVIIG  325 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd--~--LiVgV~~D~~v~-~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~  325 (420)
                      +.+..|+|||+|.||+.++++|.+..+  .  .+|.+.--..-. ..+.+..+.++|+.|++ ++...+.+.+.
T Consensus         2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~   75 (225)
T cd09286           2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVD   75 (225)
T ss_pred             EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEE
Confidence            578899999999999999999987653  2  232221111101 13357889999999886 66666666653

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.

>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]

Probab=98.16  E-value=3.1e-06  Score=77.40  Aligned_cols=62  Identities=23%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-cc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CR  317 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~  317 (420)
                      +++..++-|.|.|||.||+..+++|.+..|.|||+|.||..... ....++..||..|++. ++
T Consensus         2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t-~~nPfTagER~~mi~~~L~   64 (172)
T COG1056           2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHT-LKNPFTAGERIPMIRDRLR   64 (172)
T ss_pred             CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccc-ccCCCCccchhHHHHHHHH
Confidence            46789999999999999999999999999999999999974432 2356788899988874 44

>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]

Probab=98.06  E-value=4.8e-06  Score=79.30  Aligned_cols=66  Identities=33%  Similarity=0.512  Sum_probs=55.4

Q ss_pred             CCCCCCCeEEEEcCccccCCHHHHHHHHHHHhcC-CEEEEEEecCccccCCCC--CCCCHHHHHHhhhh
Q 014671          250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGSYH--PIMHLHERSLSVLA  315 (420)
Q Consensus       250 ~~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g-d~LiVgV~~D~~v~~~~~--pi~~~~ER~~~v~~  315 (420)
                      .++..+..++.+.|+||=+|.||-=+|..|..++ |.|||||+.|+...++..  -+-|.++|.+.|..
T Consensus       136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~  204 (293)
T KOG3351|consen  136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSN  204 (293)
T ss_pred             ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHH
Confidence            4455566789999999999999999999999997 899999999998876322  68899999976644

>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=98.05  E-value=1.8e-05  Score=71.65  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcC---CEEEEEEecC--c--cccC-CCC-CCCCHHHHHHhhhhccccceEEEc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLG---DFLLVGIYTD--Q--IVRG-SYH-PIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g---d~LiVgV~~D--~--~v~~-~~~-pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      .++.|++=|.||-+|.||-.+|++|.+.+   +...+.++=|  +  ..+. ... .+++.+||...++++. ||.+++-
T Consensus         4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G-vd~~~~~   82 (157)
T PF06574_consen    4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG-VDYVIVI   82 (157)
T ss_dssp             -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT-ESEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC-CCEEEEe
Confidence            46789999999999999999999988776   3333333333  2  1221 222 7999999999999985 8988774


Q ss_pred             CC-----CCchHHHHh-----hcCccEEEEcCCcCCC
Q 014671          326 AP-----WEVTKDMIT-----TFNICLVVHGTVSETN  352 (420)
Q Consensus       326 ~~-----~~~~~~~i~-----~~~~d~vv~G~d~~~~  352 (420)
                      +.     .-.+++|++     ++++..+|-|.|+...
T Consensus        83 ~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG  119 (157)
T PF06574_consen   83 PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFG  119 (157)
T ss_dssp             -CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EES
T ss_pred             cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCC
Confidence            32     123556665     4789999999998766

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=98.04  E-value=5.4e-05  Score=69.32  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=84.0

Q ss_pred             ccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccc---------cEEEeCCCcc--c
Q 014671           73 CFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWV---------DEVIANAPYA--I  140 (420)
Q Consensus        73 ~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~V---------D~vi~~~p~~--~  140 (420)
                      +-.|+++||+.|+++|.+.+|.|.|-|.+.+       ..+++.++|++|++. ++..         |++|..+.|.  |
T Consensus         7 NaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsYF   79 (182)
T PF08218_consen    7 NANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSYF   79 (182)
T ss_pred             cCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhhh
Confidence            5689999999999999999999888777654       478999999999985 2222         3334333221  0


Q ss_pred             c-H--------------HHHHHHHhhcCccEEEEcCCCCCCCCCccHHH-----HHHhC-CeEEEeccCC----CCChHH
Q 014671          141 T-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-----LAKKV-GRYKQIKRTE----GVSSTD  195 (420)
Q Consensus       141 ~-~--------------~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~-----~lk~~-g~~~~v~r~~----~ISST~  195 (420)
                      . +              -|.+.+...+++..-.+|+.+....  ...|.     +|... -++++++|.+    .||.|.
T Consensus        80 lK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v--T~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~  157 (182)
T PF08218_consen   80 LKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV--TRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASR  157 (182)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH--HHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHH
Confidence            0 0              2333355678999999999875422  22232     33334 3678899854    499999


Q ss_pred             HHHHHHhc
Q 014671          196 IVGRILSS  203 (420)
Q Consensus       196 Ir~rI~~~  203 (420)
                      +|+.|.++
T Consensus       158 VR~~l~~~  165 (182)
T PF08218_consen  158 VRKLLKEG  165 (182)
T ss_pred             HHHHHHcC
Confidence            99999865

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=97.99  E-value=8.5e-05  Score=74.05  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCC--EE-EEEEecCccccC--CCC----CCCCHHHHHHhhhhccccceEEEcC
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGD--FL-LVGIYTDQIVRG--SYH----PIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd--~L-iVgV~~D~~v~~--~~~----pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      ...|++-|.||-+|.||-.+|++|++.+.  .+ .+.++-++--.+  .+.    -++++++|.+.+..+. ||.+++..
T Consensus        15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~   93 (304)
T COG0196          15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD   93 (304)
T ss_pred             CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence            46799999999999999999999886542  12 333333332222  111    3899999999999997 89888843


Q ss_pred             CC-----CchHHHHh----hcCccEEEEcCCcCCCCCCCCCCChHHHHHhCC---e-EEEeCCC----CCCCHHHHHHHH
Q 014671          327 PW-----EVTKDMIT----TFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG---I-FQLLESP----KSITTTSVAQRI  389 (420)
Q Consensus       327 ~~-----~~~~~~i~----~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G---~-~~~~~~~----~~~Stt~Ii~RI  389 (420)
                      ..     -...+|++    .++++.+|-|.|+....-  ...+ ...++..|   . ...++..    ..+|||.|.+-+
T Consensus        94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~--~~g~-~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L  170 (304)
T COG0196          94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKG--RQGN-AELLRELGQKGFEVTIVPKINEEGIRISSTAIRQAL  170 (304)
T ss_pred             CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCC--CCCC-HHHHHHhccCCceEEEeccEecCCcEEchHHHHHHH
Confidence            32     13445555    889999999999876531  1112 23333333   2 3333322    249999998876


Q ss_pred             HhchH
Q 014671          390 IANHE  394 (420)
Q Consensus       390 ~~~~~  394 (420)
                      .+..-
T Consensus       171 ~~gdl  175 (304)
T COG0196         171 REGDL  175 (304)
T ss_pred             hcCCH
Confidence            55443

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=97.83  E-value=4e-05  Score=75.65  Aligned_cols=65  Identities=29%  Similarity=0.280  Sum_probs=53.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      --|.+.|+   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+++.++|.++++.+ +||.++.
T Consensus        25 g~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   92 (282)
T TIGR00018        25 GFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA   92 (282)
T ss_pred             EEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            35679999   99999999999999999888888877753221 22  4588999999999997 8999986

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>PLN02660 pantoate--beta-alanine ligase

Probab=97.75  E-value=6.5e-05  Score=74.11  Aligned_cols=65  Identities=26%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      --|.+.|.   +|.||+.||++|++.++.++|.+..+|.-... ..  +.+.|.++|+++++.+ +||.++.
T Consensus        24 gfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~   91 (284)
T PLN02660         24 ALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFN   91 (284)
T ss_pred             EEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence            45788999   99999999999999999888888877754221 22  4688999999999997 8999986

>PRK13670 hypothetical protein; Provisional

Probab=97.71  E-value=6.4e-05  Score=77.57  Aligned_cols=87  Identities=20%  Similarity=0.272  Sum_probs=64.0

Q ss_pred             EcCccccCCHHHHHHHHHHHhcCC-EEEEEEecCccccCCCCCCCCHHHHHHhhhhccccceEEEcCCC---CchHH---
Q 014671          261 IDGAFDLFHAGHVEILKKARQLGD-FLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---EVTKD---  333 (420)
Q Consensus       261 ~~G~FDl~H~GHi~~L~~Ak~~gd-~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~---~~~~~---  333 (420)
                      +---||+||.||..+|++|++... .++++|-+-..+.+|..++++..+|+++++.+. ||.|+.-+..   ....+   
T Consensus         6 IIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~G-vD~vielpf~~a~~sae~F~~   84 (388)
T PRK13670          6 IIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENG-VDLVVELPFLYSVQSADFFAE   84 (388)
T ss_pred             EEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcC-CCEEEEeCCchHhCCHHHHHH
Confidence            334599999999999999998642 355555566666664446999999999999985 8999885431   12233   


Q ss_pred             ----HHhhcCccEEEEcCC
Q 014671          334 ----MITTFNICLVVHGTV  348 (420)
Q Consensus       334 ----~i~~~~~d~vv~G~d  348 (420)
                          ++..++++.+|.|.|
T Consensus        85 ~aV~iL~~l~v~~lv~G~e  103 (388)
T PRK13670         85 GAVSILDALGVDSLVFGSE  103 (388)
T ss_pred             hHHHHHHHcCCCEEEEcCC
Confidence                345588999999988

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=97.62  E-value=0.0011  Score=65.16  Aligned_cols=138  Identities=19%  Similarity=0.168  Sum_probs=92.5

Q ss_pred             ccCCCCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc----------ccc
Q 014671           59 KCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----------LKW  128 (420)
Q Consensus        59 ~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~----------~~~  128 (420)
                      +.+...++++-+.-+-.|+.+||+.|++||.+.||.|.+-+.+++       ...++.++|.+|++.          ..+
T Consensus       139 k~r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsg  211 (352)
T COG3053         139 KLRHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSG  211 (352)
T ss_pred             HhccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecC
Confidence            334445677888889999999999999999999998876666544       367999999999974          224


Q ss_pred             ccEEEeCCCcc--cc-H--------------HHHHHHHhhcCccEEEEcCCCCCCCCCc---cHHHHHHhCC------eE
Q 014671          129 VDEVIANAPYA--IT-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGT---DAYALAKKVG------RY  182 (420)
Q Consensus       129 VD~vi~~~p~~--~~-~--------------~fl~~ll~~~~~d~vV~G~D~~~g~~g~---~~~~~lk~~g------~~  182 (420)
                      -|++|..+.|.  |- +              -|-+.+...+++..-.+|..+..-.-..   .--.+|.+.+      ++
T Consensus       212 sdYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~v  291 (352)
T COG3053         212 SDYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEV  291 (352)
T ss_pred             CCeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEE
Confidence            56666554442  11 0              1222244568899999998874321110   1122444433      36


Q ss_pred             EEeccC----CCCChHHHHHHHHhc
Q 014671          183 KQIKRT----EGVSSTDIVGRILSS  203 (420)
Q Consensus       183 ~~v~r~----~~ISST~Ir~rI~~~  203 (420)
                      ++++|.    ..||.|.+|+.+.+.
T Consensus       292 vei~Rk~~~~~~ISAS~VR~~l~~~  316 (352)
T COG3053         292 VEIERKKYQEMPISASRVRQLLAKN  316 (352)
T ss_pred             EEeehhhhcCCcccHHHHHHHHHhC
Confidence            777774    369999999998853

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=97.52  E-value=0.00015  Score=74.88  Aligned_cols=88  Identities=26%  Similarity=0.437  Sum_probs=38.2

Q ss_pred             EecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhccccccEEEeCCCcccc----H
Q 014671           70 MDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT----E  142 (420)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~----~  142 (420)
                      ++-=|+|+|.||...|++|++..  |. +|+|-|-..+  ..| |.+++--.|.++.-.+ ++|.|++ -|+.+.    +
T Consensus         6 IIaEYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFv--QRGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~qsA~   80 (388)
T PF05636_consen    6 IIAEYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFV--QRGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYALQSAE   80 (388)
T ss_dssp             -E---TT--HHHHHHHHHHH---TSSE-EEEEE--TTS--BTSSB-SS-HHHHHHHHHHH-T-SEEEE----G-------
T ss_pred             eEEeECCccHHHHHHHHHHhccCCCCE-EEEEECCCcc--cCCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccccccc
Confidence            34458999999999999999864  65 5556565544  345 7799999999997765 8999998 455443    2


Q ss_pred             HHH---HHHHhhcCccEEEEcCC
Q 014671          143 QFM---NRLFNEHKIDYIIHGDD  162 (420)
Q Consensus       143 ~fl---~~ll~~~~~d~vV~G~D  162 (420)
                      .|-   -.++..+++|.++.|..
T Consensus        81 ~FA~gaV~lL~~lgvd~l~FGsE  103 (388)
T PF05636_consen   81 YFARGAVSLLNALGVDYLSFGSE  103 (388)
T ss_dssp             -----------------------
T ss_pred             ccccccccccccccccccccccc
Confidence            343   23778889999998865

; PDB: 3GMI_A.

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.47  E-value=0.00027  Score=71.73  Aligned_cols=86  Identities=24%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             cccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhccccccEEEeCCCccccH---H-H
Q 014671           72 GCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAITE---Q-F  144 (420)
Q Consensus        72 G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~---~-f  144 (420)
                      --||++|.||+.+|++|+++.  |..++++..| ..  ..+ +++.+-.+|.++.-+. ++|.|++ -|+.++.   + |
T Consensus         8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~--qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~f   82 (358)
T COG1323           8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FT--QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPYF   82 (358)
T ss_pred             eecCcccccHHHHHHHHHHhccCCceEEeeecc-hh--hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCchh
Confidence            359999999999999999853  6555555444 33  234 7899999999999885 8999998 5554442   2 2


Q ss_pred             H---HHHHhhcCccEEEEcCC
Q 014671          145 M---NRLFNEHKIDYIIHGDD  162 (420)
Q Consensus       145 l---~~ll~~~~~d~vV~G~D  162 (420)
                      .   ..++..+++|.|+.|..
T Consensus        83 a~~av~il~~l~~~~i~fgse  103 (358)
T COG1323          83 ATRAVRILNALGGDDIAFGSP  103 (358)
T ss_pred             hHHHHHHHHhcCCCeEEEeCC
Confidence            2   12556788888888754

>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase

Probab=97.37  E-value=0.00053  Score=66.14  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcC--C-EEEEEEecCccccC-CCCCCCCHHHHHHhhh-hccccceEEE
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLG--D-FLLVGIYTDQIVRG-SYHPIMHLHERSLSVL-ACRYVDEVII  324 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d-~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~-~~~~VD~Vvi  324 (420)
                      +...+.+..|+|||+|.||+.+.+.|++.-  | ..+|++.--..-.. .+....+.++|+.|++ ++..-..+-+
T Consensus        20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V   95 (236)
T PLN02945         20 RTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMV   95 (236)
T ss_pred             CceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEe
Confidence            345677888899999999999999888643  3 33444332221111 2236779999999985 5555444443

>COG1323 Predicted nucleotidyltransferase [General function prediction only]

Probab=97.21  E-value=0.00075  Score=68.61  Aligned_cols=83  Identities=23%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             ccccCCHHHHHHHHHHHh-c-CCEEEEEEecCccccCCCCCCCCHHHHHHhhhhccccceEEEcCC--------CC--ch
Q 014671          264 AFDLFHAGHVEILKKARQ-L-GDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAP--------WE--VT  331 (420)
Q Consensus       264 ~FDl~H~GHi~~L~~Ak~-~-gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~--------~~--~~  331 (420)
                      -||+||.||.-+|++|++ . +|..++++..| .+++|..++++-.+|..+.+++. +|.||..+-        +-  -.
T Consensus         9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~qRgepai~~k~~r~~~aL~~g-~D~VIelP~~~s~q~a~~fa~~a   86 (358)
T COG1323           9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQRGEPAIGHKWERKKMALEGG-ADLVIELPLERSGQGAPYFATRA   86 (358)
T ss_pred             ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhhcCCCccccHHHHHhhhhhcC-ceEEEEcceEEecCCCchhhHHH
Confidence            499999999999999997 3 45555555555 67777779999999999999885 798888432        11  13


Q ss_pred             HHHHhhcCccEEEEcCC
Q 014671          332 KDMITTFNICLVVHGTV  348 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d  348 (420)
                      ...+..+++|.++.|..
T Consensus        87 v~il~~l~~~~i~fgse  103 (358)
T COG1323          87 VRILNALGGDDIAFGSP  103 (358)
T ss_pred             HHHHHhcCCCeEEEeCC
Confidence            34667778888888864

>TIGR00339 sopT ATP sulphurylase

Probab=97.10  E-value=0.0041  Score=64.19  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHh--CCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccc-c---cEE-EeCCC
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-V---DEV-IANAP  137 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~l--gd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~-V---D~v-i~~~p  137 (420)
                      -++|++.=+||++|.||..++++|.+.  +|.|++.+.--+    .| +-.++.+-|+++++.+.- .   +.+ +.-.|
T Consensus       183 w~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~  257 (383)
T TIGR00339       183 WDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP  257 (383)
T ss_pred             CCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence            357888999999999999999999997  687766655432    23 367899999999986311 1   111 21123


Q ss_pred             cccc----HHHHHH--HHhhcCccEEEEcCCCC
Q 014671          138 YAIT----EQFMNR--LFNEHKIDYIIHGDDPC  164 (420)
Q Consensus       138 ~~~~----~~fl~~--ll~~~~~d~vV~G~D~~  164 (420)
                      +.+.    .+.+..  +.+.|+|.++++|.|..
T Consensus       258 ~em~~agpreall~Aiir~nyG~th~IiG~Dha  290 (383)
T TIGR00339       258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDHA  290 (383)
T ss_pred             hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCC
Confidence            3221    244544  44679999999998863

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function

Probab=96.92  E-value=0.0014  Score=67.71  Aligned_cols=86  Identities=17%  Similarity=0.332  Sum_probs=42.0

Q ss_pred             CccccCCHHHHHHHHHHHhc-CCEEEEEEecCccccCCCCCCCCHHHHHHhhhhccccceEEEcCC-CC---------ch
Q 014671          263 GAFDLFHAGHVEILKKARQL-GDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-WE---------VT  331 (420)
Q Consensus       263 G~FDl~H~GHi~~L~~Ak~~-gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~-~~---------~~  331 (420)
                      --|.|||.||.-+|++||+. +.-.||+|-|-.++.+|..-+++--.|+++.+.+. ||-|+--+- +.         -.
T Consensus         8 aEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~~G-aDLViELP~~~a~qsA~~FA~ga   86 (388)
T PF05636_consen    8 AEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALKNG-ADLVIELPVVYALQSAEYFARGA   86 (388)
T ss_dssp             ---TT--HHHHHHHHHHH---TSSEEEEEE--TTSBTSSB-SS-HHHHHHHHHHHT--SEEEE---G-------------
T ss_pred             EeECCccHHHHHHHHHHhccCCCCEEEEEECCCcccCCCeeeCCHHHHHHHHHHcC-CCEEEECCCcccccccccccccc
Confidence            34899999999999999975 43356678888899988779999999999988885 898876211 11         13


Q ss_pred             HHHHhhcCccEEEEcCCc
Q 014671          332 KDMITTFNICLVVHGTVS  349 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~  349 (420)
                      ..++..+++|.++-|.+.
T Consensus        87 V~lL~~lgvd~l~FGsE~  104 (388)
T PF05636_consen   87 VSLLNALGVDYLSFGSES  104 (388)
T ss_dssp             ------------------
T ss_pred             cccccccccccccccccc
Confidence            457888889999999764

; PDB: 3GMI_A.

>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6

Probab=96.75  E-value=0.017  Score=53.23  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             cccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEc
Q 014671          265 FDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIG  325 (420)
Q Consensus       265 FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~  325 (420)
                      -.||+.||.-++++|.+.+|.|.|=|-+++      ...|+..+|..+|+. ++..++|++-
T Consensus         8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD------~S~Fpf~~R~~LVk~G~~~L~NV~V~   63 (182)
T PF08218_consen    8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED------RSLFPFADRYELVKEGTADLPNVTVH   63 (182)
T ss_pred             CCCCccHHHHHHHHHHHhCCEEEEEEEccc------cCcCCHHHHHHHHHHHhCcCCCEEEE
Confidence            468999999999999999999988887765      479999999988854 7888888874

2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity

>TIGR00018 panC pantoate--beta-alanine ligase

Probab=95.92  E-value=0.015  Score=57.51  Aligned_cols=68  Identities=22%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             CCeEEE--EcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC---C-CCCCCCHHHHHHhhhhccccceEEEcC
Q 014671          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG---S-YHPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       255 ~~~iV~--~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~---~-~~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      +++|++  +-|.   +|.||..++++|++.+|.+||.+..++.--.   . ..-+++++++.+.++++ .||.++.++
T Consensus        21 g~~ig~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~   94 (282)
T TIGR00018        21 GKTVGFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAPS   94 (282)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECCC
Confidence            455544  6677   9999999999999999999999987764422   1 12578999999998887 488887754

This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.

>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]

Probab=95.87  E-value=0.018  Score=56.85  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhh-hhccccceEEEc
Q 014671          252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSV-LACRYVDEVIIG  325 (420)
Q Consensus       252 ~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v-~~~~~VD~Vvi~  325 (420)
                      +.+++||.-+-..-.||+.||--+++||.+.||.|-+=|-+++      ...++.++|..+| +.+++.+.|.+-
T Consensus       141 r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD------~S~f~y~~R~~Lv~~G~~~l~Nvt~H  209 (352)
T COG3053         141 RHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED------SSLFPYEDRLDLVKKGTADLPNVTVH  209 (352)
T ss_pred             ccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc------cccCCHHHHHHHHHHhhccCCceEEe
Confidence            3457899988899999999999999999999999877776664      4689999999655 567888888773

>PRK00380 panC pantoate--beta-alanine ligase; Reviewed

Probab=95.75  E-value=0.031  Score=55.44  Aligned_cols=70  Identities=21%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-C---CCCCCCHHHHHHhhhhccccceEEEcC
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-S---YHPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~---~~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      +++|+++. +.--+|.||..++++|++.++.++|.+..++.--. +   ..-++++++|...++++. ||.+++..
T Consensus        21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~G-vD~v~~p~   94 (281)
T PRK00380         21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAG-VDLVFAPS   94 (281)
T ss_pred             CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcC-CCEEEeCC
Confidence            56676665 55559999999999999999999999887754322 1   125778999999988874 88888753

>PLN02660 pantoate--beta-alanine ligase

Probab=95.60  E-value=0.031  Score=55.41  Aligned_cols=68  Identities=24%  Similarity=0.277  Sum_probs=52.1

Q ss_pred             CCeE--EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC---C-CCCCCCHHHHHHhhhhccccceEEEcC
Q 014671          255 NARV--VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG---S-YHPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       255 ~~~i--V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~---~-~~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      +++|  |.+=|.   +|.||..++++|++.+|.++|.+..++.--.   . ...++++++|...++++. ||.|+.++
T Consensus        20 g~~igfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~P~   93 (284)
T PLN02660         20 GKRIALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALG-VDAVFNPH   93 (284)
T ss_pred             CCeEEEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcC-CCEEECCC
Confidence            3454  445566   9999999999999999999999987765422   1 225789999999888874 88887654

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=94.96  E-value=0.068  Score=52.87  Aligned_cols=66  Identities=24%  Similarity=0.308  Sum_probs=39.9

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC---CCCCcHHHHHHHHhccccccEEEe
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~---~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      +-+..+.=-+|-||+.|+++|++.+|.++|.+.-+|.=.....   ...-+.+.=+++++.. +||.++.
T Consensus        24 igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~   92 (280)
T PF02569_consen   24 IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA   92 (280)
T ss_dssp             EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred             EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence            4444455567999999999999999999998877764211111   3345567777888875 8998885

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>PRK04149 sat sulfate adenylyltransferase; Reviewed

Probab=94.78  E-value=0.66  Score=48.15  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccc----ccEEEe-CCCcc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPYA  139 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~----VD~vi~-~~p~~  139 (420)
                      -++|++.=+-+++|.||..|++.|.+.+|.|++-..    + ..+.+-=++.+-|++-.+++.-    -+.++. ..|..
T Consensus       186 w~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~pl----v-G~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~  260 (391)
T PRK04149        186 WKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNPL----V-GETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAA  260 (391)
T ss_pred             CCeEEEeecCCCCchHHHHHHHHHHHhcCeEEEecC----c-CCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence            457888889999999999999999999995444222    1 1122346778888888776311    122222 12221


Q ss_pred             c-----cHHHHHHHH-hhcCccEEEEcCCCC
Q 014671          140 I-----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       140 ~-----~~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      .     .+..+..++ +.++|..+++|.|..
T Consensus       261 mryAGPrEa~lhAivrkN~GcTh~IvGrDHA  291 (391)
T PRK04149        261 MRYAGPREAIFHAIVRKNYGCTHFIVGRDHA  291 (391)
T ss_pred             hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            1     134556655 459999999999863

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=94.78  E-value=0.11  Score=51.00  Aligned_cols=76  Identities=28%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             hhcccCCCCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhh-hcCC--CCCCcHHHHHHHHhccccccEE
Q 014671           56 HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEV  132 (420)
Q Consensus        56 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~v  132 (420)
                      .+.|+++++  +|-+.=+.-.+|-||+.|+++|++.+|.++|.+.-+|.=. ++..  ...-+++.=+++++.. +||.+
T Consensus        14 ~~~~r~~gk--~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~v   90 (285)
T COG0414          14 IKALRKEGK--RVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIV   90 (285)
T ss_pred             HHHHHHcCC--EEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEE
Confidence            345555443  5666667778999999999999999999888887766411 1111  2233444555555553 66666


Q ss_pred             Ee
Q 014671          133 IA  134 (420)
Q Consensus       133 i~  134 (420)
                      +.
T Consensus        91 F~   92 (285)
T COG0414          91 FA   92 (285)
T ss_pred             eC
Confidence            63

>cd00560 PanC Pantoate-beta-alanine ligase

Probab=94.66  E-value=0.083  Score=52.29  Aligned_cols=89  Identities=19%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             CCeEE--EEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC---C-CCCCCCHHHHHHhhhhccccceEEEcCCC
Q 014671          255 NARVV--YIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG---S-YHPIMHLHERSLSVLACRYVDEVIIGAPW  328 (420)
Q Consensus       255 ~~~iV--~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~---~-~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~  328 (420)
                      +++|+  .+-|.   +|.||..++++|++.+|.++|.+..++.--.   . ..-+.+++++.+.++++ .||.+......
T Consensus        21 ~~~ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~   96 (277)
T cd00560          21 GKTIGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVE   96 (277)
T ss_pred             CCeEEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHH
Confidence            44554  45666   9999999999999999999999988764422   1 12478899999998887 47877432211


Q ss_pred             Cc-hHHHH----hhcCccEEEEcC
Q 014671          329 EV-TKDMI----TTFNICLVVHGT  347 (420)
Q Consensus       329 ~~-~~~~i----~~~~~d~vv~G~  347 (420)
                      .. +.+|+    ...++..++.|.
T Consensus        97 ~m~p~~f~~~~v~~~~~~~il~G~  120 (277)
T cd00560          97 EMYPEGLFSTFVDVGPLSEVLEGA  120 (277)
T ss_pred             HcCCCCCceEEEecCCCceEEecC
Confidence            11 12222    234556667777

PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.

>cd00517 ATPS ATP-sulfurylase

Probab=94.47  E-value=0.95  Score=46.40  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc--cc--cEEEe-CCC
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK--WV--DEVIA-NAP  137 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~--~V--D~vi~-~~p  137 (420)
                      -++|++.=+-+++|.||..+++.|.+.+  +.|++-+.-     ..+.+-=++.+-|++-.+.+.  +.  +.++. ..|
T Consensus       156 w~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plv-----G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp  230 (353)
T cd00517         156 WRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLV-----GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILP  230 (353)
T ss_pred             CCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEecc-----CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence            3478888899999999999999999987  444332221     112234577788887776531  22  33332 223


Q ss_pred             ccc-----cHHHHHHHH-hhcCccEEEEcCCCC
Q 014671          138 YAI-----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       138 ~~~-----~~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      ...     .+..+..++ +.++|.++++|.|..
T Consensus       231 ~~mryAGPrEallhAiirkN~GcThfIvGrDHA  263 (353)
T cd00517         231 LPMRYAGPREALWHAIIRKNYGATHFIVGRDHA  263 (353)
T ss_pred             chhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            221     134555555 459999999999874

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be

>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]

Probab=94.39  E-value=0.54  Score=48.04  Aligned_cols=96  Identities=20%  Similarity=0.163  Sum_probs=62.1

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc----ccccEEEeC-CCc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL----KWVDEVIAN-APY  138 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~----~~VD~vi~~-~p~  138 (420)
                      .-++|++.=++|++|.||-.+.+.|...+|.|.|-+.--     .+.+-=++.+-|++..+.+    --=|.++.. .|+
T Consensus       182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~plVG-----~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~  256 (397)
T COG2046         182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPLVG-----ATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA  256 (397)
T ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEeeec-----cccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence            346899999999999999999999999999654433211     1223345567777665542    113555542 222


Q ss_pred             ccc-----HHHHHHHHh-hcCccEEEEcCCCC
Q 014671          139 AIT-----EQFMNRLFN-EHKIDYIIHGDDPC  164 (420)
Q Consensus       139 ~~~-----~~fl~~ll~-~~~~d~vV~G~D~~  164 (420)
                      ..-     +.-+..+++ .++|...++|-|.+
T Consensus       257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHA  288 (397)
T COG2046         257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHA  288 (397)
T ss_pred             HhhhcCcHHHHHHHHHHhhcCCeeeeecCCCC
Confidence            211     244555664 59999999999975

>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2

Probab=94.29  E-value=0.49  Score=45.15  Aligned_cols=94  Identities=19%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc----cccEEEe-CCCcc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIA-NAPYA  139 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~----~VD~vi~-~~p~~  139 (420)
                      ++|++.=+-+++|.||..+++.|.+.+ |.|.+-+.--     .+.+--++.+-|++-.+.+.    --+.++. ..|..
T Consensus        21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG-----~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~   95 (215)
T PF01747_consen   21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG-----PTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLP   95 (215)
T ss_dssp             SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES-----B-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC-----CCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCch
Confidence            357777779999999999999999986 7555443221     12234567788877766521    1123332 12221


Q ss_pred             --cc---HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          140 --IT---EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       140 --~~---~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                        +.   +.-+..++ +.++|..+++|.|..
T Consensus        96 mr~aGPrEallhAiirkN~GcTh~IvGrdhA  126 (215)
T PF01747_consen   96 MRYAGPREALLHAIIRKNYGCTHFIVGRDHA  126 (215)
T ss_dssp             ---SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred             hcccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence              11   24455555 459999999999975

7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....

>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]

Probab=93.99  E-value=1.1  Score=42.38  Aligned_cols=61  Identities=21%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhC----C-eEEEEEecchhhhhcCCCCCCcHHHHHHHHhc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALG----D-ELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lg----d-~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~  125 (420)
                      .+...++.|+|.++-.+|..+++-|+..-    . +++=|+-| |.-..+|.+-+.+...|+.|++.
T Consensus         7 ~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El   72 (234)
T KOG3199|consen    7 TPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL   72 (234)
T ss_pred             ceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence            34556889999999999999999999853    2 34445544 32234666789999999999985

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=93.76  E-value=0.18  Score=54.07  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchh-hhhcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~-i~~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      ++-+.-+.=.+|-||+.|+++|++.+|.++|.+.-+|. ......  ...-++++=+++++.. +||.|+.
T Consensus        21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~   90 (512)
T PRK13477         21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFA   90 (512)
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEEC
Confidence            56667788889999999999999999998888865553 111111  3455678888888886 8999885

>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []

Probab=92.65  E-value=0.2  Score=49.59  Aligned_cols=69  Identities=19%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      +++|.+++= -=-+|.||+.++++|++.+|.+||.|.-++.=-. +.   +..-+++.=++.+++. .||.|..+
T Consensus        21 ~~~igfVPT-MGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~P   93 (280)
T PF02569_consen   21 GKTIGFVPT-MGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFAP   93 (280)
T ss_dssp             TSSEEEEEE--SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE--
T ss_pred             CCeEEEECC-CchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEcC
Confidence            456655541 2235999999999999999999999997764332 11   1122333334444444 58877764

Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....

>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]

Probab=91.50  E-value=0.36  Score=47.40  Aligned_cols=72  Identities=24%  Similarity=0.379  Sum_probs=48.9

Q ss_pred             CCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCC--CCCCHHHHHHhhhhccccceEEEc
Q 014671          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYH--PIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       253 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~--pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      ..+++|.+++ +---+|.||+.++++|++.+|.+||.|.-+..=.. +..  .+--..+|-..++.-..||-+..+
T Consensus        19 ~~gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~gvd~vF~P   93 (285)
T COG0414          19 KEGKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKEGVDIVFAP   93 (285)
T ss_pred             HcCCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhcCCcEEeCC
Confidence            3456777776 34468999999999999999999999998874432 111  233344555555555567766553

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=90.87  E-value=0.34  Score=52.00  Aligned_cols=68  Identities=21%  Similarity=0.369  Sum_probs=43.6

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEcC
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      +|++++ |-=-+|.||+.++++|++.+|.+||.|..++.=.. +.   .-.-++++=.+.++.. .||.|..++
T Consensus        21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P~   92 (512)
T PRK13477         21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAPS   92 (512)
T ss_pred             cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECCC
Confidence            555554 23348999999999999999999999987763322 10   1122334334444444 588776654

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=90.85  E-value=2.6  Score=46.00  Aligned_cols=97  Identities=15%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc---cccEEEe-CCCcc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA  139 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~---~VD~vi~-~~p~~  139 (420)
                      +-++|+..=+-+++|.||..+++.|.+.+|.. +-+++  .+-..| +--++.+-|++-.+.+.   --+.++. ..|..
T Consensus       185 gw~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~  260 (568)
T PRK05537        185 GWRRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGMTK-PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLA  260 (568)
T ss_pred             CCCcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCCCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccch
Confidence            34578888899999999999999999988832 23333  111111 34667788887776531   1122221 11221


Q ss_pred             --c---cHHHHHHHH-hhcCccEEEEcCCCC
Q 014671          140 --I---TEQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       140 --~---~~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                        +   .+..+..++ +.++|.++++|.|..
T Consensus       261 mryaGpreai~hAi~r~N~Gcth~ivGrdhA  291 (568)
T PRK05537        261 MRMAGPREALWHAIIRRNYGCTHFIVGRDHA  291 (568)
T ss_pred             hcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence              1   134555555 459999999999864

>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]

Probab=89.97  E-value=0.78  Score=43.54  Aligned_cols=62  Identities=24%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             cccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhh-cCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        72 G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~-~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      -+.-.+|-||..|++|+++..++.+|.+.-+|.-.. ...  ...-++..-+..++++ +||.++.
T Consensus        30 PTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvvfa   94 (283)
T KOG3042|consen   30 PTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVVFA   94 (283)
T ss_pred             cccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEEEc
Confidence            345568999999999999999988888776664211 111  1122344455667776 7777663

>PLN02341 pfkB-type carbohydrate kinase family protein

Probab=83.91  E-value=0.29  Score=51.88  Aligned_cols=30  Identities=13%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcC
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLG  283 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g  283 (420)
                      .++++++++|+||.+|.||+.||.++..-|
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (470)
T PLN02341        412 LNEDDTFWAELLKNSDCSEISFLSKMAING  441 (470)
T ss_pred             CCcchhHHHHhhcccccchhhhhhhhhhcc
Confidence            367899999999999999999999988766

>TIGR00339 sopT ATP sulphurylase

Probab=81.49  E-value=4  Score=42.34  Aligned_cols=89  Identities=15%  Similarity=0.094  Sum_probs=57.3

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhc--CCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-c-ccc--eEEE-cCCCC
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-R-YVD--EVII-GAPWE  329 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~--gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~-~VD--~Vvi-~~~~~  329 (420)
                      +.|+--=+||++|.||..+.+.|.+.  .|.|++-..--.    .+.-.++.+-|+.+++.+ . +-.  .|++ ..|+.
T Consensus       184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~e  259 (383)
T TIGR00339       184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TKPGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLA  259 (383)
T ss_pred             CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCHHHHHHHHHHHHhhCCCCCceEEEecchH
Confidence            44556789999999999999999986  676555443332    223688999999888776 2 222  3322 11211


Q ss_pred             -----ch---HH--HHhhcCccEEEEcCCc
Q 014671          330 -----VT---KD--MITTFNICLVVHGTVS  349 (420)
Q Consensus       330 -----~~---~~--~i~~~~~d~vv~G~d~  349 (420)
                           ..   ..  +-+.+.+..++-|.|.
T Consensus       260 m~~agpreall~Aiir~nyG~th~IiG~Dh  289 (383)
T TIGR00339       260 MRYAGPREAIWHAIIRKNYGATHFIVGRDH  289 (383)
T ss_pred             hhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence                 11   11  3345788899999775

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		2e-79
3elb_A	341	Human Ctp: Phosphoethanolamine Cytidylyltransferase		4e-15
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		2e-24
3hl4_A	236	Crystal Structure Of A Mammalian Ctp:phosphocholine		5e-21
1coz_A	129	Ctp:glycerol-3-Phosphate Cytidylyltransferase From		8e-12
2b7l_A	132	Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid		4e-10
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		1e-09
3glv_A	143	Crystal Structure Of The Lipopolysaccharide Core Bi		1e-04

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/347 (44%), Positives = 221/347 (63%), Gaps = 29/347 (8%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           VRV+ DGC+D +HYGH+N LRQA+A GD L+VGV +DEEI  +KGPPV + EER   V  
Sbjct: 8   VRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQA 67
Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
           +KWVDEV+  APY  T + +++    +  D+ +HG+D  L  DG D Y   K+ GRY++ 
Sbjct: 68  IKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 123
Query: 186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDAHLS 234
           KRT+GVS+TD+VGR L       SS E +    ++ ++    P  R+P   +       S
Sbjct: 124 KRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGV-------S 176
Query: 235 QFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYT 292
           QFL TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ 
Sbjct: 177 QFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHF 236
Query: 293 DQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVS 349
           DQ V   +G  +PI +LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG   
Sbjct: 237 DQEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTE 296
Query: 350 ETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 396
               P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y
Sbjct: 297 --IIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341

>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTD-QIVRGSYHPIMHLHERSL 311
           G  A  V+ DG +D  H GH   L++AR  GD+L+VG++TD +I +    P+    ER  
Sbjct: 4   GRRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYK 63
Query: 312 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF 371
            V A ++VDEV+  AP+  T + +  +N    VHG  ++    + G+ D YE  K  G +
Sbjct: 64  XVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG--NDITLTVDGR-DTYEEVKQAGRY 120
Query: 372 QLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYY 411
           +  +  + ++TT +  R +   +A+   ++++  SE + Y
Sbjct: 121 RECKRTQGVSTTDLVGRXLLVTKAH--HSSQEXSSEYREY 158

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  V++  ER   V
Sbjct: 77  VRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAV 136
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
              ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D Y   K+ G + 
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFA 192
Query: 184 QIKRTEGVSSTDIVGRIL 201
             +RTEG+S++DI+ RI+
Sbjct: 193 PTQRTEGISTSDIITRIV 210

>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 242 RIVQFSNCKG-PGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRG 298
           R+     C+G P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++   
Sbjct: 61  RVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHN 120
Query: 299 -SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
                +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H  +  ++    G
Sbjct: 121 FKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSS---AG 177
Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 409
             D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+
Sbjct: 178 SDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229

>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTD----QIVRGSYHPIMHLHERSLSVLACRY 318
           G FDL H GH+++L++A+QLGD+L+V I TD    Q  + +YH   H   R L +   RY
Sbjct: 8   GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRY 64
Query: 319 VDEVIIGAPWEVTKDMITTFNICLVVHG 346
           VDEVI    WE  K  I   NI + V G
Sbjct: 65  VDEVIPEKNWEQKKQDIIDHNIDVFVMG 92

>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHE-RSLSVLACRYVDE 321
           G +DL H GH+E+L++AR++GD+L+V + TD+  +  +    + +E R + + + RYVD 
Sbjct: 8   GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDL 67
Query: 322 VIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSIT 381
           VI    W   +D +  F++ + V G   E         D  EV         L+  + I+
Sbjct: 68  VIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFL--KDKCEVI-------YLKRTEGIS 118
Query: 382 TTSVAQRI 389
           TT + Q +
Sbjct: 119 TTKIKQEL 126

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +RV   G FD++H GH + L+++K LGDELVV V  D     N   P+     RLAL+S 
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 126 LKWVDEVI 133
           LK VD  I
Sbjct: 63  LKVVDRAI 70

>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core Biosynthesis Protein From Thermoplasma Volcanium Gss1 Length = 143

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYH-PIMHLHERSLSVLACRYVDE 321
           G FD+ H GH+  LK++++LGD L+V +  D   R +   PI   + R   +   + VD 
Sbjct: 9   GVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDR 68
Query: 322 VIIGAPWEVTKDMI 335
            I+G   ++ K +I
Sbjct: 69  AILGHEGDMMKTVI 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-141
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	1e-47
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	7e-40
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	5e-60
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	2e-49
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	5e-54
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	3e-33
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	7e-54
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	1e-33
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	6e-23
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	2e-17
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	6e-10
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	5e-09
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	3e-06
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	5e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	7e-06
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	1e-04
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	4e-05
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	5e-05
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	9e-05
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	1e-04
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	2e-04
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	2e-04
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	2e-04
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	3e-04
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	3e-04
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  406 bits (1046), Expect = e-141
 Identities = 151/345 (43%), Positives = 222/345 (64%), Gaps = 15/345 (4%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERL 120
           G ++ VRV+ DGC+D++HYGH+N LRQA+A+GD L+VGV +DEEI  +KGPPV + EER 
Sbjct: 3   GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERY 62

Query: 121 ALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG 180
            +V  +KWVDEV+  APY  T + +    +++  D+ +HG+D  L  DG D Y   K+ G
Sbjct: 63  KMVQAIKWVDEVVPAAPYVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 118

Query: 181 RYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLRAIQSKDA----HLSQF 236
           RY++ KRT+GVS+TD+VGR+L   +   + ++ ++                     +SQF
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGRNPWTGVSQF 178

Query: 237 LPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQ 294
           L TS++I+QF++ K P P   V+Y+ GAFDLFH GHV+ L+K  +L +  +++ G++ DQ
Sbjct: 179 LQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQ 238

Query: 295 IVR---GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSET 351
            V    G  +PIM+LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG     
Sbjct: 239 EVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEI- 297

Query: 352 NTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 396
             P    SDPY+  K  GIF+ ++S  ++TT  + QRII N   Y
Sbjct: 298 -IPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  165 bits (419), Expect = 1e-47
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 54  CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGP 111
            F   K  +     +Y+ G FDL H GH + L +   L +   ++ G+  D+E+   KG 
Sbjct: 187 QFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGK 246

Query: 112 --PVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL-LPD 168
             P++++ ER   V   ++V EV+  APYA+T + +    +  K+D + HG    +   D
Sbjct: 247 NYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELL----SHFKVDLVCHGKTEIIPDRD 302

Query: 169 GTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           G+D Y   K+ G ++QI     +++  IV RI+++  +
Sbjct: 303 GSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLE 340

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341

 Score =  144 bits (365), Expect = 7e-40
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR---GSYHPIMHLHER 309
           G  A  V+ DG +D+ H GH   L++AR +GD+L+VG++TD+ +    G   P+    ER
Sbjct: 4   GRRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKG--PPVFTQEER 61

Query: 310 SLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG 369
              V A ++VDEV+  AP+  T + +  +N    VHG      T      D YE  K  G
Sbjct: 62  YKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG---NDITLTVDGRDTYEEVKQAG 118

Query: 370 IFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYYEQKMFVSGD 420
            ++  +  + ++TT +  R++   +A+       +   +          G 
Sbjct: 119 RYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYADSFGKCPGGR 169

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  194 bits (494), Expect = 5e-60
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 6/154 (3%)

Query: 55  FHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPP 112
              +    ++ VRVY DG FDL H GHA AL QAK L     L+VGV SDE     KG  
Sbjct: 66  EACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFT 125

Query: 113 VLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDA 172
           V++  ER   V   ++VDEV+ NAP+ +T +F+     EH+ID++ H D P       D 
Sbjct: 126 VMNENERYDAVQHCRYVDEVVRNAPWTLTPEFL----AEHRIDFVAHDDIPYSSAGSDDV 181

Query: 173 YALAKKVGRYKQIKRTEGVSSTDIVGRILSSMED 206
           Y   K+ G +   +RTEG+S++DI+ RI+   + 
Sbjct: 182 YKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDV 215

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236

 Score =  167 bits (423), Expect = 2e-49
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 15/233 (6%)

Query: 189 EGVSSTDIVGRIL---SSMEDTKACEDHNNASLPRDPL----RAIQSKDAHLSQFLPTSR 241
           +  SS  +  R         +    ED   + + R  +     A  S +  +    P  R
Sbjct: 2   DAQSSAKVNSRKRRKEVPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVR 61

Query: 242 RIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRGS 299
             ++ +    P      VY DG FDLFH+GH   L +A+ L    +L+VG+ +D++   +
Sbjct: 62  VTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTH-N 120

Query: 300 YH--PIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
           +    +M+ +ER  +V  CRYVDEV+  APW +T + +    I  V H  +  ++    G
Sbjct: 121 FKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSS---AG 177

Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKY 410
             D Y+  K  G+F   +  + I+T+ +  RI+ +++ Y +RN ++  + K+ 
Sbjct: 178 SDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 230

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  174 bits (445), Expect = 5e-54
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + GD      D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129

 Score =  120 bits (303), Expect = 3e-33
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-RGSYHPIMHLHERSLSVLA 315
           + V   G FDL H GH+++L++A+QLGD+L+V I TD+   +           R L +  
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILET 61

Query: 316 CRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE 375
            RYVDEVI    WE  K  I   NI + V G   E           ++  K       L 
Sbjct: 62  IRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWE---------GKFDFLKDQCEVVYLP 112

Query: 376 SPKSITTTSVAQRIIA 391
             + I+TT + + I  
Sbjct: 113 RTEGISTTKIKEEIAG 128

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  174 bits (444), Expect = 7e-54
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           RV   G +DL+HYGH   LR+A+ +GD L+V + +DE             E+R  ++  +
Sbjct: 3   RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VD VI    +   E  +     +  +D  + G       D    +   K       +K
Sbjct: 63  RYVDLVIPEKGWGQKEDDV----EKFDVDVFVMGH------DWEGEFDFLKDKCEVIYLK 112

Query: 187 RTEGVSSTDIVGRILS 202
           RTEG+S+T I   +  
Sbjct: 113 RTEGISTTKIKQELYG 128

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132

 Score =  121 bits (307), Expect = 1e-33
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYH--PIMHLHERSLSVL 314
           + V   G +DL H GH+E+L++AR++GD+L+V + TD+  +   H        +R + + 
Sbjct: 2   KRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQ-IKHKKSYYDYEQRKMMLE 60

Query: 315 ACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLL 374
           + RYVD VI    W   +D +  F++ + V G   +           ++  K       L
Sbjct: 61  SIRYVDLVIPEKGWGQKEDDVEKFDVDVFVMG--HD-------WEGEFDFLKDKCEVIYL 111

Query: 375 ESPKSITTTSVAQRIIANHE 394
           +  + I+TT + Q +     
Sbjct: 112 KRTEGISTTKIKQELYGKDA 131

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 43/161 (26%)

Query: 61  GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEE 118
           G     RV   G FD++H GH + L+++K LGDELVV V  D           P+     
Sbjct: 1   GMI---RVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTA--RNNGKIPIFDENS 55

Query: 119 RLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPD----GTDAYA 174
           RLAL+S LK VD  I              L +E  +   +      + PD    G D   
Sbjct: 56  RLALISELKVVDRAI--------------LGHEGDMMKTVI----EVKPDIITLGYD-QK 96

Query: 175 LAKKVGRYKQIKR-------------TEGVSSTDIVGRILS 202
             +   + K  K               +  SS+ +  +I+ 
Sbjct: 97  FDEAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIME 137

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR-GSYHPIMHLHERSLSVLA 315
             V   G FD+ H GH+  LK++++LGD L+V +  D   R     PI   + R   +  
Sbjct: 3   IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62

Query: 316 CRYVDEVIIG 325
            + VD  I+G
Sbjct: 63  LKVVDRAILG 72

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V + G F+ +H GH   +  A  LG   +   V+ + +   +   VL    R   V   
Sbjct: 2   KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRY 61

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKI 154
                        IT  +   L  + + 
Sbjct: 62  VMRKYGFEPEIVKITNPYGKTLDVDFEY 89

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACR 317
           V + G F+  H GH +++  A +LG   + +G+ +D++ R     ++    R+ +V    
Sbjct: 3   VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYV 62

Query: 318 YVDEVIIGAPWEVTKDMITTFNICLVVHGTVSET 351
                      ++T     T ++         ET
Sbjct: 63  MRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPET 96

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365

 Score = 48.0 bits (113), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-----IIANKGPPVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD          +K   + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVIANAPYAI 140
           +RL       W+ ++       I
Sbjct: 60  DRLR------WMQQIFKYQKNQI 76

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Length = 181

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R  + G     H GH   ++      DEL++ + S +   + + P   +  ER+ +++  
Sbjct: 5   RGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDP--FTAGERVMMLT-- 60

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQ-- 184
           K + E    A         +   N   + +I       L P     Y+    V R     
Sbjct: 61  KALSENGIPASRYYIIPVQDIECNALWVGHIKM-----LTPPFDRVYSGNPLVQRLFSED 115

Query: 185 --------IKRTEGVSSTDI 196
                   +   +  S T++
Sbjct: 116 GYEVTAPPLFYRDRYSGTEV 135

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 16/93 (17%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 66  VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
           +R ++ G F   H GH   +++     DE+++G+ S ++    + P   +  ER+ +++ 
Sbjct: 1   LRGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP--FTAGERILMIT- 57

Query: 126 LKWVDEVIANAP-YAITEQFMNRLFNEHKIDYI 157
                + + +           +  FN   + Y+
Sbjct: 58  -----QSLKDYDLTYYPIPIKDIEFNSIWVSYV 85

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHER 309
           R   I G F  FH GH+E++KK  +  D +++GI + Q      +P     ER
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFT-AGER 52

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Length = 160

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVL-SMEERLALV 123
           G FD +  GH + +++A  L +++ V V+ +     +K    L S EERLA++
Sbjct: 7   GSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAII 55

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Length = 158

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++  +Y  G FD +  GH + + +A  + D +++ + +      +K  P+ ++EER+AL 
Sbjct: 1   QKRAIY-PGTFDPITNGHIDIVTRATQMFDHVILAIAAS----PSKK-PMFTLEERVALA 54

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Length = 162

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           K + +Y  G FD +  GH + + +A  L ++++V           K  P L +EER+ L+
Sbjct: 5   KPIAIY-PGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RKD-PHLKLEERVNLI 58

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Length = 187

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 56  HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLS 115
            + +      V VY  G FD +  GH + +R+A ++ D LVVGV         K  P  S
Sbjct: 14  AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADS----RAKK-PFFS 67

Query: 116 MEERLALV 123
           +EERL + 
Sbjct: 68  LEERLKIA 75

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} PDB: 3nd6_A* 3nd7_A* Length = 171

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           +++ ++  G FD M  GH N + ++  L DE+++GV  +     +K   + + EE+  L+
Sbjct: 2   RKIALF-PGSFDPMTNGHLNLIERSAKLFDEVIIGVFIN----TSKQ-TLFTPEEKKYLI 55

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Length = 168

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLAL 122
           +  + V   G FD + YGH + + ++    DE+ V V+ +    + K     S+EER+ L
Sbjct: 2   EHTIAVI-PGSFDPITYGHLDIIERSTDRFDEIHVCVLKN----SKKE-GTFSLEERMDL 55

Query: 123 V 123
           +
Sbjct: 56  I 56

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
             + V   G FD + YGH + +++   + +++ V V+++    ++K  P+ S+EER  L+
Sbjct: 2   ASIAVC-PGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNN----SSKK-PLFSVEERCELL 55

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 3lcj_A* 3rba_A* 1tfu_A* 3rff_A 3rhs_A* Length = 177

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 56  HKKKCGKKKRVRVYMD-----GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG 110
           H    G   R   +M      G FD +  GH +   +A A  DE+VV ++ +      K 
Sbjct: 8   HHHSSGLVPR-GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVN----PAKT 62

Query: 111 PPVLSMEERLALV 123
             +  ++ER+A+V
Sbjct: 63  -GMFDLDERIAMV 74

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Length = 173

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 72  GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           G FD +  GH + +++A ++ DELVV V  +      K   + ++EER  L+
Sbjct: 19  GSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKK-CMFTLEERKKLI 65

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Length = 157

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 64  KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
           ++V +Y  G FD +  GH + + ++  L ++L+V V         K  P+ S++ERL ++
Sbjct: 2   QKVGIY-PGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AKN-PMFSLDERLKMI 55

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 45/365 (12%), Positives = 93/365 (25%), Gaps = 117/365 (32%)

Query: 141 TEQFMNRLFNEHKIDYIIHGDDP---------CLLPDGTDAY------ALAKKVGRYKQI 185
            +     + ++ +ID+II   D           LL    +         L      YK +
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFL 94

Query: 186 K---RTEGVSSTDIVGRILSSME----DTKACEDHNNASLPR-DPLRAIQSKDAHLSQFL 237
               +TE    + +    +   +    D +    +N   + R  P   ++     L +  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQ---ALLELR 148

Query: 238 PTSRRIVQFSNCKGPGPN--ARVVYIDGAFDLFHAGHV------------EILKKARQLG 283
           P    ++      G G    A  V +           +             +L+  ++L 
Sbjct: 149 PAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL- 205

Query: 284 DFLLVGIYTDQIVRGSYHPIMHLHE---------------RSLSVLACRYVDEVIIGAPW 328
               +          S +  + +H                  L VL       V      
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----LNV-----Q 254

Query: 329 EVTKDMITTFNI-C--LV---------VHGTVSETNTPLTGQSDPYEVAKSMGIF----- 371
                    FN+ C  L+              + T+  L   S      +   +      
Sbjct: 255 --NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 372 -QLLESPKSITTTS-VAQRIIA-------NHEAYMKRNAKKAVSE--------------K 408
            +  + P+ + TT+     IIA             K      ++               +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 409 KYYEQ 413
           K +++
Sbjct: 373 KMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	100.0
3hl4_A	236	Choline-phosphate cytidylyltransferase A; rossmann	99.97
3elb_A	341	Ethanolamine-phosphate cytidylyltransferase; kenne	99.95
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.9
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.89
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.88
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.83
1coz_A	129	Protein (glycerol-3-phosphate cytidylyltransferase	99.82
2b7l_A	132	Glycerol-3-phosphate cytidylyltransferase; rossman	99.82
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.79
3glv_A	143	Lipopolysaccharide core biosynthesis protein; stru	99.79
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.77
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.75
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.75
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.72
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.72
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.71
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.7
3nv7_A	157	Phosphopantetheine adenylyltransferase; helicobact	99.7
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.69
3k9w_A	187	Phosphopantetheine adenylyltransferase; niaid, ssg	99.69
4f3r_A	162	Phosphopantetheine adenylyltransferase; phosphopan	99.68
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.66
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.65
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.64
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.63
3f3m_A	168	Phosphopantetheine adenylyltransferase; PPAT, coen	99.63
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.62
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.62
3nbk_A	177	Phosphopantetheine adenylyltransferase; PPAT, PHP;	99.6
3nd5_A	171	Phosphopantetheine adenylyltransferase; PPAT, coen	99.59
1vlh_A	173	Phosphopantetheine adenylyltransferase; TM0741, st	99.55
1qjc_A	158	Phosphopantetheine adenylyltransferase; coenzyme A	99.54
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.54
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.54
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.49
1o6b_A	169	Phosphopantetheine adenylyltransferase; structural	99.47
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.44
1od6_A	160	PPAT, phosphopantetheine adenylyltransferase; coen	99.41
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	99.41
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.41
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	99.35
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.35
2qtr_A	189	Nicotinate (nicotinamide) nucleotide adenylyltran;	99.33
1kam_A	194	Deamido-NAD(+), nicotinate-nucleotide adenylyltran	99.31
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	99.31
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	99.29
3do8_A	148	Phosphopantetheine adenylyltransferase; protein wi	99.29
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	99.26
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	99.24
1yum_A	242	'probable nicotinate-nucleotide adenylyltransferas	99.23
1k4m_A	213	NAMN adenylyltransferase; nucleotidyltransferase;	99.2
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.11
3h05_A	177	Uncharacterized protein VPA0413; nucleotidylyl, tr	99.09
2h29_A	189	Probable nicotinate-nucleotide adenylyltransferase	99.08
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	99.05
1ej2_A	181	Nicotinamide mononucleotide adenylyltransferase; d	99.03
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.01
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	99.01
1f9a_A	168	Hypothetical protein MJ0541; alpha/beta, transfera	99.0
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	98.91
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	98.87
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.85
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	98.71
1nup_A	252	FKSG76; NAD biosynthesis, mitochondria, pyridine a	98.7
1kqn_A	279	Nmnat, nicotinamide mononucleotide adenylyl transf	98.67
2ejc_A	280	Pantoate--beta-alanine ligase; X-RAY diffraction,	98.58
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	98.53
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	98.34
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	98.34
3gmi_A	357	UPF0348 protein MJ0951; protein with unknown funct	98.24
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	97.51
1v8f_A	276	Pantoate-beta-alanine ligase; rossmann fold, dimer	96.98
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	96.96
3ag6_A	283	Pantothenate synthetase; ATP-dependent enzyme, ATP	96.63
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	96.45
3q12_A	287	Pantoate--beta-alanine ligase; structural genomics	96.4
3cov_A	301	Pantothenate synthetase; pantothenate biosynthesis	96.12
3inn_A	314	Pantothenate synthetase; ssgcid, SBRI, UW, decode,	95.62
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	95.28
3uk2_A	283	Pantothenate synthetase; AMP, structural genomics,	95.18
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	95.15
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.04
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	94.75
3mxt_A	285	Pantothenate synthetase; alpha-beta-alpha, structu	94.64
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	92.97
3n8h_A	264	Pantothenate synthetase; alpha-beta sandwich, liga	92.76
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	92.57
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	91.92
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	91.36
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	86.93

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-72  Score=557.77  Aligned_cols=328  Identities=45%  Similarity=0.805  Sum_probs=278.6

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccH
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE  142 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~  142 (420)
                      .++++|++.||||++|.||+++|++|+++||+|+|||++|+.+...|++|++|++||++++++|+|||+|++..|+....
T Consensus         5 ~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~~~   84 (341)
T 3elb_A            5 RRAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTL   84 (341)
T ss_dssp             CCCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSSCCH
T ss_pred             CCceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCCCHH
Confidence            46789999999999999999999999999999999999999876677789999999999999999999999977776667


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccccccccccccC--CCCCC
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNN--ASLPR  220 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~~~~~~~~~~~--~~~~~  220 (420)
                      +|+    ++++||++|+|+||++|.++.+.|+.+++.|+++.+++++++|||+|++||+.++++|+...+...  .+...
T Consensus        85 efi----~~~~~d~vV~G~D~~~g~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~~~~~~~~~~~~~~~~~~  160 (341)
T 3elb_A           85 ETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTKAHHSSQEMSSEYREYAD  160 (341)
T ss_dssp             HHH----HHTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC--------------------
T ss_pred             HHH----HHhCCCEEEECCCCCCCCCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhccccccccccchhhHHHHH
Confidence            886    478999999999999999999999999999999999999999999999999999999886432211  11223


Q ss_pred             Cchhh--hcCcccccccccccccchhccccCCCCCCCCeEEEEcCccccCCHHHHHHHHHHHhcCC--EEEEEEecCccc
Q 014671          221 DPLRA--IQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIV  296 (420)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd--~LiVgV~~D~~v  296 (420)
                      .++..  +.++++.+++|++++++|.||++|+.|.+++++||++|+|||||.||+++|++|+++||  +|||||++|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v  240 (341)
T 3elb_A          161 SFGKCPGGRNPWTGVSQFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEV  240 (341)
T ss_dssp             -----------CCCCCCCCCCHHHHHHHCCCCCCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHH
T ss_pred             hhccCccccCCCcceecccCCcceeeeeccCCCCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhh
Confidence            34322  34678889999999999999999999999999999999999999999999999999999  999999999988


Q ss_pred             cC--CC-CCCCCHHHHHHhhhhccccceEEEcCCCCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEE
Q 014671          297 RG--SY-HPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQL  373 (420)
Q Consensus       297 ~~--~~-~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~  373 (420)
                      ++  |+ +|+|+++||+++|++|++||+|++++|+.++.+++++++||++|||++|...+  ..+.|+|.+++.+|++.+
T Consensus       241 ~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~~~~~l~~~~~~~~~~~~iv~G~d~~~~~--~~g~d~y~~~k~~G~~~~  318 (341)
T 3elb_A          241 NHYKGKNYPIMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPD--RDGSDPYQEPKRRGIFRQ  318 (341)
T ss_dssp             HHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEEECSSCCHHHHHHTTCSEEEECSSCCCCC--TTSCCTTHHHHHHTCEEE
T ss_pred             HhhcCCCCCCCCHHHHHHHHHHcCCCCCEEECCCCcchHHHHHhcCCcEEEECCCCcccc--CCccchHHHHHhCCEEEE
Confidence            76  55 49999999999999999999999999999899999999999999999987754  346789999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHhchHhH
Q 014671          374 LESPKSITTTSVAQRIIANHEAY  396 (420)
Q Consensus       374 ~~~~~~~Stt~Ii~RI~~~~~~~  396 (420)
                      +++++++|||+||+||++||++|
T Consensus       319 i~~~~~~STt~ii~RI~~nr~~~  341 (341)
T 3elb_A          319 IDSGSNLTTDLIVQRIITNRLEY  341 (341)
T ss_dssp             CCCSCCCCHHHHHHHHHC-----
T ss_pred             cCCCCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999887

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-34  Score=271.11  Aligned_cols=153  Identities=33%  Similarity=0.647  Sum_probs=130.1

Q ss_pred             CCCCCCeEEEEcCccccCCHHHHHHHHHHHhc--CCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCC
Q 014671          251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAP  327 (420)
Q Consensus       251 ~~~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~--gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~  327 (420)
                      .+.+.+++||++|+||+||.||+++|++|+++  ||+|||||++|+.+.+ ++.|+|+++||+++|++|++||+|++++|
T Consensus        71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~p  150 (236)
T 3hl4_A           71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAP  150 (236)
T ss_dssp             CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSCC
T ss_pred             CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECCc
Confidence            44566789999999999999999999999999  5899999999998876 44699999999999999999999999999


Q ss_pred             CCchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhchHhHHHHHhhhhHh
Q 014671          328 WEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVS  406 (420)
Q Consensus       328 ~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~~~~~~r~~~k~~~  406 (420)
                      |.++.+++++++||+++||+++...   ..+.++|..+++.|+++++++++++|||+|++||++++..|++||.+|..+
T Consensus       151 ~~l~~d~i~~~~~d~Vv~GDd~~~~---~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~~  226 (236)
T 3hl4_A          151 WTLTPEFLAEHRIDFVAHDDIPYSS---AGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYT  226 (236)
T ss_dssp             SSCCHHHHHHTTCCEEEEESSCCCC---SSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC-----------
T ss_pred             CcCcHHHHHHcCCCEEEECCccccC---CCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCCC
Confidence            9988999999999999999886543   345678999999999999999999999999999999999999999999543

>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}

Probab=99.97  E-value=4.5e-30  Score=242.80  Aligned_cols=142  Identities=43%  Similarity=0.685  Sum_probs=130.9

Q ss_pred             cCCCCceEEEEecccCcCCHHHHHHHHHHHHh--CCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCC
Q 014671           60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAP  137 (420)
Q Consensus        60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~l--gd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p  137 (420)
                      .+..++++||+.|+||++|.||+++|++|+++  +|+|+|||++|+.+...|++|+++.+||++++++|+|||+|+++.|
T Consensus        71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~p  150 (236)
T 3hl4_A           71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAP  150 (236)
T ss_dssp             CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSCC
T ss_pred             CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECCc
Confidence            34467889999999999999999999999999  5899999999998877788899999999999999999999999999


Q ss_pred             ccccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhccc
Q 014671          138 YAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME  205 (420)
Q Consensus       138 ~~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~~~  205 (420)
                      |.++.+|++    +++||+||+|+|+.++.++.+.|+.+++.|+++.+++++++|||+|++||+....
T Consensus       151 ~~l~~d~i~----~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~  214 (236)
T 3hl4_A          151 WTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYD  214 (236)
T ss_dssp             SSCCHHHHH----HTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CcCcHHHHH----HcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHH
Confidence            988888874    6899999999999998888899999999999999999999999999999998644

>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}

Probab=99.95  E-value=6.1e-28  Score=241.12  Aligned_cols=136  Identities=31%  Similarity=0.531  Sum_probs=123.6

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHH
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD  333 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~  333 (420)
                      .+++|+++|+||+||.||+++|++|+++||+|+|||++|+.+.+ ++.|+++++||++++++|++||+|++++++..+.+
T Consensus         6 ~~~~v~~~G~FD~lH~GH~~lL~~A~~l~d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~~~e   85 (341)
T 3elb_A            6 RAVRVWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYVTTLE   85 (341)
T ss_dssp             CCCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSSCCHH
T ss_pred             CceEEEEEeeCCCCCHHHHHHHHHHHHhCCcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCCCHHH
Confidence            36789999999999999999999999999999999999998765 44599999999999999999999999988878899


Q ss_pred             HHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014671          334 MITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       334 ~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                      ++++++||++|+|+||..+   ..+.+.|...+.+|+++++++++++|||+|++||+...
T Consensus        86 fi~~~~~d~vV~G~D~~~g---~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~  142 (341)
T 3elb_A           86 TLDKYNCDFCVHGNDITLT---VDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVT  142 (341)
T ss_dssp             HHHHTTCSEEEECSCCCBC---TTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC--
T ss_pred             HHHHhCCCEEEECCCCCCC---CCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            9999999999999999775   24567888888999999999999999999999998853

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.90  E-value=1.7e-23  Score=181.57  Aligned_cols=129  Identities=29%  Similarity=0.466  Sum_probs=95.6

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      |++++++|+|||+|.||+.++++|+++++.++|++++|+.....+.+|+++.+||++|+++++++|.++...++.   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (132)
T 2b7l_A            1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWG---QK   77 (132)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTTCCEEEEECCGG---GH
T ss_pred             CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhccCCCCCCCHHHHHHHHHhcCCCCEEEECCChH---HH
Confidence            357999999999999999999999999999999999998542212268999999999999998899998755543   67


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                      ++. +++++++++|+|+||.      +.++.|++.+++..+++...||||.||++|.++
T Consensus        78 ~~~-~~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           78 EDD-VEKFDVDVFVMGHDWE------GEFDFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHH-HHHTTCCEEEECGGGT------TTTGGGTTTSEEEECSSCC--------------
T ss_pred             HHH-HHHcCCCEEEECCCCc------CcHHHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            765 5788999999999983      234467888999999998889999999999865

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.89  E-value=2.3e-23  Score=179.85  Aligned_cols=128  Identities=34%  Similarity=0.495  Sum_probs=105.7

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      |++++++|+|||+|.||+.++++|++.+|.++|++++++.......+++++.+||++|+++++++|.++...++.   +|
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~---~~   77 (129)
T 1coz_A            1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWE---QK   77 (129)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCST---TH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHH---HH
Confidence            357999999999999999999999999999999999987322112268999999999999998899988765553   56


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHh
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS  202 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~  202 (420)
                      ++. +++++++++++|+||.      +.++.|++.+++..+++...||||.||++|.+
T Consensus        78 ~~~-l~~~~~~~iv~G~D~~------~~~~~L~~~~~v~~~~~~~~iSST~IR~~i~~  128 (129)
T 1coz_A           78 KQD-IIDHNIDVFVMGDDWE------GKFDFLKDQCEVVYLPRTEGISTTKIKEEIAG  128 (129)
T ss_dssp             HHH-HHHTTCSEEEEEGGGT------TTTGGGTTTSEEEEECCCTTCCHHHHHHTC--
T ss_pred             HHH-HHHhCCcEEEECCCCC------CcHHHHHhCCeEEEcCCCCCcCHHHHHHHHHh
Confidence            655 5678999999999983      23456788899999999889999999998763

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.88  E-value=2.3e-22  Score=177.41  Aligned_cols=135  Identities=33%  Similarity=0.447  Sum_probs=89.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      |++++++|+|||+|.||+.+|++|+++++.++|++++++.....+.++++|.+||+++++++++||.++...|.    +|
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~----~f   77 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEG----DM   77 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTT----CH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCch----hH
Confidence            57899999999999999999999999999999999998865432237899999999999999889999986443    36


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEec--c--CCCCChHHHHHHHHhcccc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R--TEGVSSTDIVGRILSSMED  206 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r--~~~ISST~Ir~rI~~~~~~  206 (420)
                      ++ ++++++++++|+|+||+|+.  ....+..++.| .+..++  .  ...||||.||++|.+..++
T Consensus        78 ~~-~~~~l~~~~iv~G~d~~f~~--~~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~~~  141 (143)
T 3glv_A           78 MK-TVIEVKPDIITLGYDQKFDE--AELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELIGE  141 (143)
T ss_dssp             HH-HHHHHCCSEEEECTTCHHHH--HHHHHHHHHHTCCCEEEECCCCC-------------------
T ss_pred             HH-HHHhcCCCEEEECCCCCCCH--HHHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHhcc
Confidence            64 66789999999999998842  11122223233 333322  2  2469999999999876553

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.83  E-value=1.3e-20  Score=185.68  Aligned_cols=136  Identities=21%  Similarity=0.202  Sum_probs=109.1

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeE---EEEEecch--h-hhhc---CC-CCCCcHHHHHHHHhccccccEEEe
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDEL---VVGVVSDE--E-IIAN---KG-PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~L---iVgV~sd~--~-i~~~---K~-~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      ...|+++|+|||+|.||+.+|++|++.|+.+   .++++.|+  . +...   +. +++++.+||.++++++ +||.++.
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l-GVD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE-GVEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH-TCCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc-CCCEEEE
Confidence            4579999999999999999999999998542   44455554  2 2211   12 5799999999999998 6999987


Q ss_pred             CCCcc-----cc-HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCe--EEEecc----CCCCChHHHHHHHHh
Q 014671          135 NAPYA-----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKR----TEGVSSTDIVGRILS  202 (420)
Q Consensus       135 ~~p~~-----~~-~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~--~~~v~r----~~~ISST~Ir~rI~~  202 (420)
                       .||+     .+ ++|+++++.+++++.+|+|+||+||. +.++.+.|++.|+  +..++.    ...||||.||+.|.+
T Consensus        99 -~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~  176 (308)
T 3op1_A           99 -LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILD  176 (308)
T ss_dssp             -ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCSTTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHH
T ss_pred             -ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHc
Confidence             4443     22 48998888899999999999999999 9999999998875  666665    245999999999986


Q ss_pred             c
Q 014671          203 S  203 (420)
Q Consensus       203 ~  203 (420)
                      +
T Consensus       177 G  177 (308)
T 3op1_A          177 G  177 (308)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*

Probab=99.82  E-value=3.2e-20  Score=160.09  Aligned_cols=126  Identities=34%  Similarity=0.491  Sum_probs=106.1

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccc-cCCCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v-~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||+.++++|++++|.++|+++.|+.. .+++.|+++.+||++++++|+++|.|++..++..+.+.
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~d~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~~   80 (129)
T 1coz_A            1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQD   80 (129)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHhcCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHHHH
Confidence            36899999999999999999999999999999999998732 12446899999999999999999999987777667777


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHH
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRII  390 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~  390 (420)
                      +++++|++++.|.||..+.         ...+..|.+..+++...+|||.|.++|.
T Consensus        81 l~~~~~~~iv~G~D~~~~~---------~~L~~~~~v~~~~~~~~iSST~IR~~i~  127 (129)
T 1coz_A           81 IIDHNIDVFVMGDDWEGKF---------DFLKDQCEVVYLPRTEGISTTKIKEEIA  127 (129)
T ss_dssp             HHHTTCSEEEEEGGGTTTT---------GGGTTTSEEEEECCCTTCCHHHHHHTC-
T ss_pred             HHHhCCcEEEECCCCCCcH---------HHHHhCCeEEEcCCCCCcCHHHHHHHHH
Confidence            8899999999999984321         1245568888999988999999998764

>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}

Probab=99.82  E-value=2.5e-20  Score=161.46  Aligned_cols=128  Identities=28%  Similarity=0.488  Sum_probs=95.7

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcccc-CCCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR-GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~-~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||+.+|++|++++|.++|+++.|+... +++.|+++.+||++++++|+++|.|++..++..+.+.
T Consensus         1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~~~   80 (132)
T 2b7l_A            1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQKEDD   80 (132)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTTCCEEEEECCGGGHHHH
T ss_pred             CeEEEEeeecCcCCHHHHHHHHHHHHhCCcEEEEEECCHHHhccCCCCCCCHHHHHHHHHhcCCCCEEEECCChHHHHHH
Confidence            368999999999999999999999999999999999987432 2445899999999999999999999996666666677


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhc
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIAN  392 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~  392 (420)
                      +++++|++++.|.|+..+.         ...+..|.+..++....+|||.|.++|.+.
T Consensus        81 ~~~~~~~~iv~G~D~~~~~---------~~L~~~~~v~~i~~~~~iSST~IR~~i~~g  129 (132)
T 2b7l_A           81 VEKFDVDVFVMGHDWEGEF---------DFLKDKCEVIYLKRTEGISTTKIKQELYGK  129 (132)
T ss_dssp             HHHTTCCEEEECGGGTTTT---------GGGTTTSEEEECSSCC--------------
T ss_pred             HHHcCCCEEEECCCCcCcH---------HHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence            8899999999999984321         124556889899988899999999988664

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.79  E-value=2.3e-19  Score=175.99  Aligned_cols=130  Identities=21%  Similarity=0.267  Sum_probs=101.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCe---EEEEEecc--hhhhhcC-CCCCCcHHHHHHHHhccccccEEEeCCCc---
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDE---LVVGVVSD--EEIIANK-GPPVLSMEERLALVSGLKWVDEVIANAPY---  138 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~---LiVgV~sd--~~i~~~K-~~pi~t~eER~~ll~~~~~VD~vi~~~p~---  138 (420)
                      |+++|+||++|.||+++|++|+++|+.   ..+++++|  +.+...+ .+++++.+||+++++++. ++.+++   |   
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~---F~~~   77 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLD---FFRI   77 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEEC---HHHH
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEE---hHHh
Confidence            789999999999999999999999864   22444444  4332222 257999999999999987 555554   3   


Q ss_pred             --cccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEeccC----CCCChHHHHHHHHhc
Q 014671          139 --AITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT----EGVSSTDIVGRILSS  203 (420)
Q Consensus       139 --~~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~----~~ISST~Ir~rI~~~  203 (420)
                        ...++|+++++  ++++++|+|+||+||.++.++.+.|++.| ++..++..    ..||||.||+.|.++
T Consensus        78 a~ls~~~Fi~~il--l~~~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G  147 (293)
T 1mrz_A           78 KDLTPEGFVERYL--SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  147 (293)
T ss_dssp             TTCCHHHHHHHHC--TTCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHh--cCCCEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence              12257888766  89999999999999999999999998754 67777753    469999999999875

>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}

Probab=99.79  E-value=9.6e-20  Score=160.60  Aligned_cols=133  Identities=22%  Similarity=0.341  Sum_probs=90.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +++|++.|+||++|.||..+|++|++++|.++|+|+.|+...+ ++.|+++.+||++++++|++||.|++..+.+ ..++
T Consensus         2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~-f~~~   80 (143)
T 3glv_A            2 MIRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD-MMKT   80 (143)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC-HHHH
T ss_pred             ceEEEEEeecCCCCHHHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh-HHHH
Confidence            6899999999999999999999999999999999999886653 4569999999999999999999999988776 4578


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe---EEEeCC--CCCCCHHHHHHHHHhchH
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI---FQLLES--PKSITTTSVAQRIIANHE  394 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~---~~~~~~--~~~~Stt~Ii~RI~~~~~  394 (420)
                      +++++++++|+|.|+..+     ..+.....+..|.   .+....  ...+|||.|.+.|.+.+.
T Consensus        81 ~~~l~~~~iv~G~d~~f~-----~~~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~~  140 (143)
T 3glv_A           81 VIEVKPDIITLGYDQKFD-----EAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELIG  140 (143)
T ss_dssp             HHHHCCSEEEECTTCHHH-----HHHHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred             HHhcCCCEEEECCCCCCC-----HHHHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHhc
Confidence            999999999999986332     1112223333442   222222  346999999999977653

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.77  E-value=4.7e-19  Score=177.09  Aligned_cols=136  Identities=16%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCe---EEEEEecchh---hh-hcC-CCCCCcHHHHHHHHhccccccEEEeCCC
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDE---LVVGVVSDEE---II-ANK-GPPVLSMEERLALVSGLKWVDEVIANAP  137 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~---LiVgV~sd~~---i~-~~K-~~pi~t~eER~~ll~~~~~VD~vi~~~p  137 (420)
                      ..|+++|+|||+|.||+.||++|++.++.   ..+++++|+.   +. ..+ .+++++.++|+++++++ +||.++. .|
T Consensus        16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~-gVD~v~v-~~   93 (338)
T 2x0k_A           16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESF-GIDGVLV-ID   93 (338)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT-TCSEEEE-EC
T ss_pred             CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc-CCCEEEE-cc
Confidence            47999999999999999999999998854   4666777663   21 122 15699999999999997 6999886 33


Q ss_pred             cc-----cc-HHHHHH-HHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC----eEEEeccC----CCCChHHHHHHHHh
Q 014671          138 YA-----IT-EQFMNR-LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKRT----EGVSSTDIVGRILS  202 (420)
Q Consensus       138 ~~-----~~-~~fl~~-ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g----~~~~v~r~----~~ISST~Ir~rI~~  202 (420)
                      |+     .+ ++|+++ ++++++++++|+|+||+||.++.++.+.|++.+    ++..++..    ..||||.||+.|.+
T Consensus        94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~g~~V~~v~~~~~~~~~ISST~IR~~L~~  173 (338)
T 2x0k_A           94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSE  173 (338)
T ss_dssp             TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTTTSEEEEECCCEETTEECSHHHHHHHHHT
T ss_pred             ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcCCeEEEEECcEecCCcccccchHHHHHhc
Confidence            42     22 479988 446799999999999999999999998888765    45666652    35999999999986


Q ss_pred             c
Q 014671          203 S  203 (420)
Q Consensus       203 ~  203 (420)
                      +
T Consensus       174 G  174 (338)
T 2x0k_A          174 G  174 (338)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.75  E-value=4.7e-19  Score=158.88  Aligned_cols=127  Identities=19%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||++++++|++++|+|+|++++|.    .|+|+++.+||+++++. ++.+|.|.+....+.+.++
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~~~~   77 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AKNPMFSLDERLKMIQLATKSFKNVECVAFEGLLAYL   77 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GGCCSSCHHHHHHHHHHHHTTSTTEEEEEECSCHHHH
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CCCCCCCHHHHHHHHHHHhcCCCcEEEEecCchHHHH
Confidence            478999999999999999999999999999999999986    45699999999999987 7899998876556678899


Q ss_pred             HhhcCccEEEEc----CCcCCCCCCCCCCChHHHHHhCC---eEEEeCCCC---CCCHHHHHHHHHhc
Q 014671          335 ITTFNICLVVHG----TVSETNTPLTGQSDPYEVAKSMG---IFQLLESPK---SITTTSVAQRIIAN  392 (420)
Q Consensus       335 i~~~~~d~vv~G----~d~~~~~~~~~~~d~~~~~k~~G---~~~~~~~~~---~~Stt~Ii~RI~~~  392 (420)
                      +++++||++++|    +||+..      .+.....+..+   ..++++..+   .+|||.|.+.+..+
T Consensus        78 ~~~~~~~~ivrG~r~~~D~~ye------~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           78 AKEYHCKVLVRGLRVVSDFEYE------LQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             HHHTTCCCBCCCCSCCCCHHHH------HHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             HHHcCCCEEEECCcccchhhhh------HHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            999999999999    444321      11111223332   223344443   79999988876544

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.75  E-value=1.8e-18  Score=159.35  Aligned_cols=132  Identities=21%  Similarity=0.240  Sum_probs=94.7

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCcccc
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAIT  141 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~  141 (420)
                      +.++++++.|+|||+|.||+.++++|++++|+++|+|.+++    .| +|+++.+||++|++. ++++|.+.. .+|+  
T Consensus        20 ~~mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v-~~f~--   91 (187)
T 3k9w_A           20 GSMVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKV-MGFT--   91 (187)
T ss_dssp             CCCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEE-EEES--
T ss_pred             CCcEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEE-Eech--
Confidence            44689999999999999999999999999999999999875    23 589999999999998 678998876 2332  


Q ss_pred             HHHHHHHHhhcCccEEEEc----CCCCCCCCCccHHHHHHhCCeEEEeccC---CCCChHHHHHHHHhc
Q 014671          142 EQFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRT---EGVSSTDIVGRILSS  203 (420)
Q Consensus       142 ~~fl~~ll~~~~~d~vV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r~---~~ISST~Ir~rI~~~  203 (420)
                       ++..+++++++++++|+|    .||.+...-......+....+.+.+...   ..||||.||+++..+
T Consensus        92 -~~~~d~l~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  159 (187)
T 3k9w_A           92 -GLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLG  159 (187)
T ss_dssp             -SCHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             -hhHHHHHHHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcC
Confidence             233344567899999999    5554211000000111112234444443   369999999999865

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.72  E-value=1.4e-17  Score=147.93  Aligned_cols=129  Identities=17%  Similarity=0.231  Sum_probs=93.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCccccHHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~~~f  144 (420)
                      ++++++|+|||+|.||+.++++|++.+|.++++++.++    .| +++++.++|++|++. +.++|.+... +++   .|
T Consensus         2 ~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~-~~~---~~   72 (158)
T 1qjc_A            2 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SK-KPMFTLEERVALAQQATAHLGNVEVV-GFS---DL   72 (158)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SS-CCSSCHHHHHHHHHHHTTTCTTEEEE-EEC---SC
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhcCCCeEEc-ccc---hH
Confidence            57999999999999999999999999999999998875    34 478999999999985 7788877652 232   12


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHH-HhC---C-eEEEeccC--CCCChHHHHHHHHhc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALA-KKV---G-RYKQIKRT--EGVSSTDIVGRILSS  203 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~l-k~~---g-~~~~v~r~--~~ISST~Ir~rI~~~  203 (420)
                      ..+++++++++++++|.|+.++.........+ +..   . .+..++..  ..||||.||++|.++
T Consensus        73 ~~~~l~~l~~~~~v~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g  138 (158)
T 1qjc_A           73 MANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQ  138 (158)
T ss_dssp             HHHHHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEeccchhhhHHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcC
Confidence            23345678999999999976644322221111 221   1 22333332  369999999999865

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.72  E-value=4.4e-18  Score=153.29  Aligned_cols=128  Identities=16%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI  335 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~i  335 (420)
                      ++++++.|+|||+|.||++++++|++++|+|+|+++.|.    .++|+++.+||+++++.+...|.|.+....+.+.+++
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~~~~   80 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RKDPHLKLEERVNLIADVLTDERVEVLPLTGLLVDFA   80 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC----------CCHHHHHHHHHHHCCCTTEEEEECCSCHHHHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----ccCCCCCHHHHHHHHHHhhCCCCEEEEeccchHHHHH
Confidence            589999999999999999999999999999999999886    4569999999999998765449887766666888999


Q ss_pred             hhcCccEEEEcC----CcCCCCCCCCCCChHHHHHhC--C-eEEEeCCC---CCCCHHHHHHHHHhch
Q 014671          336 TTFNICLVVHGT----VSETNTPLTGQSDPYEVAKSM--G-IFQLLESP---KSITTTSVAQRIIANH  393 (420)
Q Consensus       336 ~~~~~d~vv~G~----d~~~~~~~~~~~d~~~~~k~~--G-~~~~~~~~---~~~Stt~Ii~RI~~~~  393 (420)
                      ++++++++++|-    ||+..      .+.....+..  + ..+++...   ..+|||.|.+++..+.
T Consensus        81 ~~~~~~~~v~G~r~~~Df~~e------~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~  142 (162)
T 4f3r_A           81 KTHQANFILRGLRAVSDFDYE------FQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLGG  142 (162)
T ss_dssp             HHTTCCEEEEEECSHHHHHHH------HHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTTC
T ss_pred             HHcCCCEEEECCCchhhhhhH------HHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcCC
Confidence            999999999994    43211      0001112222  2 23444333   3799998888876554

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.71  E-value=3e-17  Score=147.89  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=93.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCccccHHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~~~f  144 (420)
                      ++++++|+|||+|.||+.++++|++.+|.++|++..++    .| +++++.+||++|++. +..+|.+.. .+++   +|
T Consensus         3 ~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~   73 (169)
T 1o6b_A            3 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITV-ETSQ---GL   73 (169)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEE-EECS---SC
T ss_pred             cEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEE-cccc---hH
Confidence            57999999999999999999999999999988887543    34 578999999999985 567787665 2332   24


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHh----CCeEEEeccC---CCCChHHHHHHHHhc
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK----VGRYKQIKRT---EGVSSTDIVGRILSS  203 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~----~g~~~~v~r~---~~ISST~Ir~rI~~~  203 (420)
                      ..+++++++++++++|.|+.++.+.......+.+    ..+...+...   ..||||.||+++.++
T Consensus        74 ~~~~l~~l~~~~~i~G~d~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           74 LIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEEcCccccchHHHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            4445567899999999998876543333322222    1223333322   369999999999865

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.70  E-value=9.5e-18  Score=153.49  Aligned_cols=133  Identities=19%  Similarity=0.083  Sum_probs=102.7

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccEEEeCCCcc--
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYA--  139 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vi~~~p~~--  139 (420)
                      ++++++|+|||+|.||+.++++|++.+  |.+++++++++.   .|. +++++.++|++|++. ++++|.+.. .+++  
T Consensus         3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~~~~~~~~v~v-~~~e~~   78 (189)
T 2qtr_A            3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQGRNITSVESRLQMLELATEAEEHFSI-CLEELS   78 (189)
T ss_dssp             EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTTSCCCCHHHHHHHHHHHHTTCTTEEE-CCTGGG
T ss_pred             eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccCCCCCCHHHHHHHHHHHhCCCCCEEE-ehHHhc
Confidence            578999999999999999999999998  999999988763   343 569999999999984 667887766 3343  


Q ss_pred             -----ccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC-----------------CCCChH
Q 014671          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (420)
Q Consensus       140 -----~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~-----------------~~ISST  194 (420)
                           ++.++++.+-.++ |+   ++|+|.|+.++..+++.++.+.+.+.+..++|.                 ..||||
T Consensus        79 ~~~~~~~~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~w~~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST  157 (189)
T 2qtr_A           79 RKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS  157 (189)
T ss_dssp             SCSCCCHHHHHHHHHHHC-TTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred             CCCCCCHHHHHHHHHHHC-CCCCEEEEEehhhhhhhhccCCHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence                 4445554443333 33   399999999888888888888888876666542                 259999


Q ss_pred             HHHHHHHhc
Q 014671          195 DIVGRILSS  203 (420)
Q Consensus       195 ~Ir~rI~~~  203 (420)
                      .||+++.++
T Consensus       158 ~IR~~l~~g  166 (189)
T 2qtr_A          158 LLRERYKEK  166 (189)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999865

>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*

Probab=99.70  E-value=4.5e-18  Score=152.50  Aligned_cols=129  Identities=20%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCcc-ccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYA-ITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~-~~~  142 (420)
                      ++++++.|+||++|.||+.++++|++++|+|+|++.+++    .| .|+++.+||++|++. ++.++.+... +|+ ...
T Consensus         2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v~-~~~~l~~   75 (157)
T 3nv7_A            2 QKVGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVECV-AFEGLLA   75 (157)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEEE-EECSCHH
T ss_pred             CEEEEEEEEcCCCCHHHHHHHHHHHHhCCceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEEE-ecCchHH
Confidence            468999999999999999999999999999999998876    34 589999999999987 6778876552 222 223


Q ss_pred             HHHHHHHhhcCccEEEEc----CCCCCCCCCccHHHHHHhCCeEEEeccCC---CCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRTE---GVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r~~---~ISST~Ir~rI~~~  203 (420)
                      +    ++++++++++|.|    .||.+..+-......|....+.+.++.++   .+|||.||+.+..+
T Consensus        76 ~----~~~~~~~~~ivrG~r~~~D~~ye~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~g  139 (157)
T 3nv7_A           76 Y----LAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHK  139 (157)
T ss_dssp             H----HHHHTTCCCBCCCCSCCCCHHHHHHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTT
T ss_pred             H----HHHHcCCCEEEECCcccchhhhhHHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHHcC
Confidence            3    4467899999999    66632110000010111112333344443   79999999998854

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.69  E-value=2.2e-16  Score=145.46  Aligned_cols=133  Identities=18%  Similarity=0.062  Sum_probs=98.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHh-ccccccEEEeCCCcc--
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVS-GLKWVDEVIANAPYA--  139 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~-~~~~VD~vi~~~p~~--  139 (420)
                      ++++++|+|||+|.||+.++++|++.+  |.+++++++++.   .|. +++++.++|++|++ ++++++.+.. .+++  
T Consensus         8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~   83 (194)
T 1kam_A            8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKL-ELVEME   83 (194)
T ss_dssp             EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEE-CCGGGS
T ss_pred             EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEE-eHHHhc
Confidence            678999999999999999999999998  889999987763   343 57899999999998 4778887766 2333  


Q ss_pred             -----ccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC-----------------CCCChH
Q 014671          140 -----ITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSST  194 (420)
Q Consensus       140 -----~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~-----------------~~ISST  194 (420)
                           ++.++++.+..++ |+   ++|+|.|+.++...+..++.+-+...+...+|.                 ..||||
T Consensus        84 ~~~~~~t~~~l~~l~~~~-p~~~~~~v~G~D~~~~~~~W~~~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISST  162 (194)
T 1kam_A           84 REGPSYTFDTVSLLKQRY-PNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSST  162 (194)
T ss_dssp             TTCCCSHHHHHHHHHHHS-TTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHH
T ss_pred             CCCCCChHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCHHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCHH
Confidence                 4556666655555 45   999999998887777777655555555554442                 159999


Q ss_pred             HHHHHHHhc
Q 014671          195 DIVGRILSS  203 (420)
Q Consensus       195 ~Ir~rI~~~  203 (420)
                      .||+++..+
T Consensus       163 ~IR~~i~~g  171 (194)
T 1kam_A          163 MIRERFKSK  171 (194)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999865

>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*

Probab=99.69  E-value=4.2e-17  Score=150.15  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||+.++++|++++|.|+|+|.+|.    .+.|+++.+||+++++. ++.+|.|.+....+.+.++
T Consensus        22 mki~v~~GsFDpiH~GHl~li~~A~~~~d~viv~v~~~p----~K~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~~~~d~   97 (187)
T 3k9w_A           22 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AKKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDF   97 (187)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCG----GGCCSSCHHHHHHHHHHHHTTCTTEEEEEESSCHHHH
T ss_pred             cEEEEEEEeCCcCcHHHHHHHHHHHHHCCcEEEEEecCC----ccCCCCCHHHHHHHHHHHhccCCcEEEEechhhHHHH
Confidence            689999999999999999999999999999999999875    45699999999999988 6899999886655678899


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhC--C-eEEEeCCC---CCCCHHHHHHHHHhch
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM--G-IFQLLESP---KSITTTSVAQRIIANH  393 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~--G-~~~~~~~~---~~~Stt~Ii~RI~~~~  393 (420)
                      +++++++++++|-+...+ |..+ .......+..  + ..+++...   ..+|||.|.+++..+.
T Consensus        98 l~~l~~~~iv~G~r~~~D-f~~E-~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~  160 (187)
T 3k9w_A           98 VRANDARVIVRGLRAVSD-FEYE-FQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGG  160 (187)
T ss_dssp             HHHTTCSEEEEECCTTSC-HHHH-HHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHcCCCEEEECCCcccc-cchH-HHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHcCC
Confidence            999999999999442211 1100 0001112222  2 23444433   4799999999887644

>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}

Probab=99.68  E-value=2.1e-17  Score=148.90  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      ++++++.|+||++|.||+.++++|++++|+++|++.+++    .| +|+++.+||++|++.+...+.+........+.++
T Consensus         5 m~i~i~~GsFDPiH~GHl~li~~A~~~~d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~~~   79 (162)
T 4f3r_A            5 KPIAIYPGTFDPLTNGHVDIIERALPLFNKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLTGLLVDF   79 (162)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGCSEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECCSCHHHH
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEeccchHHHH
Confidence            568999999999999999999999999999999999875    34 6899999999999875444655442211233344


Q ss_pred             HHHHHhhcCccEEEEc----CCCCCCCCCccHHHHHHhCCeEEEeccCC---CCChHHHHHHHHhc
Q 014671          145 MNRLFNEHKIDYIIHG----DDPCLLPDGTDAYALAKKVGRYKQIKRTE---GVSSTDIVGRILSS  203 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G----~D~~~g~~g~~~~~~lk~~g~~~~v~r~~---~ISST~Ir~rI~~~  203 (420)
                      +    ++++++++|.|    .||.+...-......+....+.+.+...+   .||||.||+++..+
T Consensus        80 ~----~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g  141 (162)
T 4f3r_A           80 A----KTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTLG  141 (162)
T ss_dssp             H----HHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             H----HHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHcC
Confidence            4    57899999999    44421000000000111223444444443   79999999998865

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.66  E-value=1.3e-16  Score=144.91  Aligned_cols=132  Identities=13%  Similarity=0.270  Sum_probs=93.7

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEE-cCCCCchHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVII-GAPWEVTKD  333 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi-~~~~~~~~~  333 (420)
                      ++++++.|+|||+|.||++++++|++++|.|+|+++.+.    .|+|+++.+||+++++ +++.++.|.+ ....+.+.+
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tvd   77 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SKQTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTVE   77 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHHH
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CCCCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHHH
Confidence            479999999999999999999999999999999998775    4469999999999998 5799999988 555567899


Q ss_pred             HHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHh----CCeEEEeCCC--CCCCHHHHHHHHHhch
Q 014671          334 MITTFNICLVVHGTVSETNTPLTGQSDPYEVAKS----MGIFQLLESP--KSITTTSVAQRIIANH  393 (420)
Q Consensus       334 ~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~----~G~~~~~~~~--~~~Stt~Ii~RI~~~~  393 (420)
                      ++++++++++++|-+.-. ++.. +.......+.    .+.+...+.+  ..+|||.|.+++..+.
T Consensus        78 ~~~~l~~~~~i~G~~~~~-d~~~-e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g~  141 (171)
T 3nd5_A           78 SAKSLGANFLIRGIRNVK-DYEY-EKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGG  141 (171)
T ss_dssp             HHHHHTCCEEEEEECSHH-HHHH-HHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHHCCCCEEEECCCchh-hhHH-HHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcCC
Confidence            999999999999944211 1100 0000001111    2233333332  4799999999987654

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.65  E-value=7.5e-16  Score=137.13  Aligned_cols=122  Identities=23%  Similarity=0.288  Sum_probs=86.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccEEEeCCCccccHHHH
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFM  145 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~~~~fl  145 (420)
                      ++++|+|||+|.||+.++++|++.+|.++++++.++    .|. .++++.++|++|++. +.++|.+.. .+++   +|.
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e---~~~   74 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENP----SKRGQYLFSAEERLAIIREATAHLANVEA-ATFS---GLL   74 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEE-EEEC---SCH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCCCHHHHHHHHHHHhcCCCCEEE-EecC---chH
Confidence            899999999999999999999999999999998664    233 478999999999985 567786655 2332   244


Q ss_pred             HHHHhhcCccEEEEcCCCCCCCCCccHHHHHH-------hC---Ce-EEEeccC--CCCChHHHHHHHHhc
Q 014671          146 NRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-------KV---GR-YKQIKRT--EGVSSTDIVGRILSS  203 (420)
Q Consensus       146 ~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk-------~~---g~-~~~v~r~--~~ISST~Ir~rI~~~  203 (420)
                      .+++++++++++++|.|.      +++++.+.       ..   .. +..+...  ..||||.||+++.++
T Consensus        75 ~~~l~~l~~~~~v~G~d~------~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           75 VDFVRRVGAQAIVKGLRA------VSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             HHHHHHTTCSEEEEEECT------TSCHHHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEEeCCc------ccchHHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            445677899999999872      22222222       11   12 2233322  369999999999865

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.64  E-value=1.3e-15  Score=138.82  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCch
Q 014671          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVT  331 (420)
Q Consensus       253 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~  331 (420)
                      ..+++++++.|+|||+|.||++++++|++++|+|+|++..|.    .|+|.++.+||+++++. ++..+.|.+....+.+
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~l~   93 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLV   93 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TSCCSSCHHHHHHHHHHHCTTCTTEEEEECCSCH
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CCCCCCCHHHHHHHHHHHhCCCCCEEEEecCchH
Confidence            456789999999999999999999999999999999999876    45699999999999975 7889999887777789


Q ss_pred             HHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHH--hCCeEEEeC-C--CCCCCHHHHHHHHHhch
Q 014671          332 KDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAK--SMGIFQLLE-S--PKSITTTSVAQRIIANH  393 (420)
Q Consensus       332 ~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k--~~G~~~~~~-~--~~~~Stt~Ii~RI~~~~  393 (420)
                      .+++++++++++++|-+.-. |+.. +.+.....+  ..-..+++. .  ...+|||.|.+++....
T Consensus        94 vd~~~~~~a~~ivrGlr~~~-Dfey-e~~~a~~nr~l~~ietvfl~~~~~~~~ISST~IRe~~~~gg  158 (177)
T 3nbk_A           94 VDFVRSCGMTAIVKGLRTGT-DFEY-ELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGG  158 (177)
T ss_dssp             HHHHHHTTCCEEEEEECTTC-CHHH-HHHHHHHHHHHHCCEEEEEECCGGGSSCCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCEEEECCCchh-HHHH-HHHHHHHHHhcCCCceEEEeCCCcccccchHHHHHHHHcCC
Confidence            99999999999999933211 1100 000000111  111233432 2  24799999999876554

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.63  E-value=7.3e-16  Score=139.57  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=95.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+|||+|.||+.++++|++++|.|+|+++.+.    .++|+++.+||+++++. ++..+.|.+....+.+.++
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~tvd~   78 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDY   78 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC---------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCHHHH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CCCCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCHHHH
Confidence            579999999999999999999999999999999999875    44699999999999975 6888888776666688999


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHh----CCeEEEeCCC--CCCCHHHHHHHHHhchH
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKS----MGIFQLLESP--KSITTTSVAQRIIANHE  394 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~----~G~~~~~~~~--~~~Stt~Ii~RI~~~~~  394 (420)
                      +++++++++++|.|...+ +..+ .......+.    .+.+..++.+  ..+|||.|.+++..+..
T Consensus        79 ~~~l~~~~~I~G~d~~~d-~~~e-~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g~~  142 (168)
T 3f3m_A           79 CEQVGAKTIIRGLRAVSD-FEYE-LRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRAD  142 (168)
T ss_dssp             HHHHTCCEEEEEECTTCC-HHHH-HHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTTCC
T ss_pred             HHHcCCCEEEEcCCchhh-hhHH-HHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcCCC
Confidence            999999999999653221 1000 000011111    1223333333  24999999999877654

>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0

Probab=99.63  E-value=5.4e-16  Score=140.43  Aligned_cols=129  Identities=18%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCc-cccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPY-AITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~-~~~~  142 (420)
                      +++++++|+|||+|.||+.++++|++++|+++|++..++    .| +++++.++|++|++. ++..+.+... +| .++.
T Consensus         3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~tv   76 (168)
T 3f3m_A            3 HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKVH-QFSGLLV   76 (168)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEEE-ECCSCHH
T ss_pred             ceEEEEEEEcCcCCHHHHHHHHHHHHhCCEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEEE-EcCCCHH
Confidence            468999999999999999999999999999999999765    34 589999999999985 4566655442 12 2344


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHH----HHHhCCeEEEeccCC---CCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA----LAKKVGRYKQIKRTE---GVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~----~lk~~g~~~~v~r~~---~ISST~Ir~rI~~~  203 (420)
                      +++    +++++++++.|-|-....+.+-...    .+....+.+.+..++   .||||.||+++..+
T Consensus        77 d~~----~~l~~~~~I~G~d~~~d~~~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g  140 (168)
T 3f3m_A           77 DYC----EQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYR  140 (168)
T ss_dssp             HHH----HHHTCCEEEEEECTTCCHHHHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTT
T ss_pred             HHH----HHcCCCEEEEcCCchhhhhHHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHcC
Confidence            555    5678999999955322111110000    111111223333332   39999999999865

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.62  E-value=9.5e-16  Score=139.25  Aligned_cols=129  Identities=19%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCCCCchHHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVTKDMI  335 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~~~~~~~~i  335 (420)
                      -|+++.|+|||+|.||+.++++|++++|.|+|+++++.    .++|+++.+||++|++ +++.++.|.+....+.+.+.+
T Consensus        13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~tvd~l   88 (173)
T 1vlh_A           13 MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKKCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLVDYL   88 (173)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TCCCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHHH
T ss_pred             eEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CCCCCCCHHHHHHHHHHHhcCCCCEEEecCcchHHHHH
Confidence            48999999999999999999999999999999999985    4459999999999998 799999988855445789999


Q ss_pred             hhcCccEEEEcCC-cCCCCCCCCCCChHHH-HHhC---CeEEEeCCC---CCCCHHHHHHHHHhch
Q 014671          336 TTFNICLVVHGTV-SETNTPLTGQSDPYEV-AKSM---GIFQLLESP---KSITTTSVAQRIIANH  393 (420)
Q Consensus       336 ~~~~~d~vv~G~d-~~~~~~~~~~~d~~~~-~k~~---G~~~~~~~~---~~~Stt~Ii~RI~~~~  393 (420)
                      +.++++++++|-. |.  ++  +......+ .+.+   ...+.+...   ..+|||.|.+++..+.
T Consensus        89 ~~l~~~~~i~gl~~w~--d~--~~~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g~  150 (173)
T 1vlh_A           89 KKHGIKVLVRGLRAVT--DY--EYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGG  150 (173)
T ss_dssp             HHHTCCEEEEEECTTS--CH--HHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHhCCCeEEeCCCccc--ch--hhccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcCC
Confidence            9999999999931 11  11  00001111 1221   122333222   3699999999987654

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.62  E-value=6.5e-16  Score=144.46  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHh-ccccccEEEeCCCc------
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY------  138 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD~vi~~~p~------  138 (420)
                      ++++|+|||+|.||+.++++|++.+  |.+++.+++++.   .|..++++.++|++|++ ++++++.+.. .+|      
T Consensus         6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~ml~~a~~~~~~v~v-~~~e~~~~~   81 (213)
T 1k4m_A            6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTL-DERELKRNA   81 (213)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEE-CCHHHHCSS
T ss_pred             EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHhccCCCEEE-eHHHhcCCC
Confidence            8999999999999999999999997  889998887753   34346899999999998 5677887766 233      


Q ss_pred             -cccHHHHHHHHhhcCcc---EEEEcCCC
Q 014671          139 -AITEQFMNRLFNEHKID---YIIHGDDP  163 (420)
Q Consensus       139 -~~~~~fl~~ll~~~~~d---~vV~G~D~  163 (420)
                       +++.+|++.+.++++++   ++++|.|.
T Consensus        82 ~s~t~~~l~~l~~~~~~~~~~~~i~G~D~  110 (213)
T 1k4m_A           82 PSYTAQTLKEWRQEQGPDVPLAFIIGQDS  110 (213)
T ss_dssp             CCCHHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred             CCcHHHHHHHHHHHhCCCCcEEEEEehhh
Confidence             35678888876677899   99999974

>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*

Probab=99.60  E-value=1.7e-15  Score=137.99  Aligned_cols=132  Identities=17%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             CCCceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeCCCccc
Q 014671           62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAI  140 (420)
Q Consensus        62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~~p~~~  140 (420)
                      +.+++++++.|+|||+|.||+.++++|++++|+|+|++..++    .| +++++.+||++|++. ++..+.+.+..--.+
T Consensus        18 ~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~l   92 (177)
T 3nbk_A           18 GSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQVGHGL   92 (177)
T ss_dssp             --CCCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEECCSC
T ss_pred             CCCCEEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEecCch
Confidence            345779999999999999999999999999999999999775    34 489999999999985 666666654221233


Q ss_pred             cHHHHHHHHhhcCccEEEEcCCCCCCCCCcc----HHHHHHhCCeEEEecc---CCCCChHHHHHHHHhc
Q 014671          141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTD----AYALAKKVGRYKQIKR---TEGVSSTDIVGRILSS  203 (420)
Q Consensus       141 ~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~----~~~~lk~~g~~~~v~r---~~~ISST~Ir~rI~~~  203 (420)
                      +.+|+    +++++++++.|-+...+.+.+-    ....+ ...+.+.+..   ...||||.||+++..+
T Consensus        93 ~vd~~----~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~~g  157 (177)
T 3nbk_A           93 VVDFV----RSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLG  157 (177)
T ss_dssp             HHHHH----HHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHHTT
T ss_pred             HHHHH----HHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHHcC
Confidence            45555    5689999999933211111110    01123 3334344332   3469999999998754

>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*

Probab=99.59  E-value=8e-16  Score=139.68  Aligned_cols=124  Identities=21%  Similarity=0.245  Sum_probs=84.9

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEe-CCCccccH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-NAPYAITE  142 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~-~~p~~~~~  142 (420)
                      +++++++|+||++|.||+.++++|++++|+|+|++..++    .| +|+++.++|++|++. ++.++.+.. ..--.++.
T Consensus         2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~tv   76 (171)
T 3nd5_A            2 RKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQLTV   76 (171)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSCHH
T ss_pred             CeEEEEEEEccccCHHHHHHHHHHHHHCCCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCcHH
Confidence            468999999999999999999999999999999997764    34 489999999999984 577776654 21113455


Q ss_pred             HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHH-------Hh---CCeEEEec---cCCCCChHHHHHHHHhc
Q 014671          143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALA-------KK---VGRYKQIK---RTEGVSSTDIVGRILSS  203 (420)
Q Consensus       143 ~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~l-------k~---~g~~~~v~---r~~~ISST~Ir~rI~~~  203 (420)
                      +++    +++++++++.|-|-      ..+++..       +.   ..+.+.+.   ....||||.||+++..+
T Consensus        77 d~~----~~l~~~~~i~G~~~------~~d~~~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~g  140 (171)
T 3nd5_A           77 ESA----KSLGANFLIRGIRN------VKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFG  140 (171)
T ss_dssp             HHH----HHHTCCEEEEEECS------HHHHHHHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HHH----HHCCCCEEEECCCc------hhhhHHHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHcC
Confidence            555    46789999999542      1112111       11   12222222   23379999999999865

>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3

Probab=99.55  E-value=8.4e-15  Score=133.00  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=87.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHh-ccccccEEEeCCCcc-ccHH
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPYA-ITEQ  143 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD~vi~~~p~~-~~~~  143 (420)
                      .+++++|+|||+|.||+.++++|++++|+|+|++.+++    .| +++++.++|++|++ +++.++.+... +++ ++.+
T Consensus        13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~tvd   86 (173)
T 1vlh_A           13 MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKVD-VHHGLLVD   86 (173)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEEE-EECSCHHH
T ss_pred             eEEEEEEEECcCcHHHHHHHHHHHHHCCEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEEe-cCcchHHH
Confidence            47999999999999999999999999999999999974    23 38999999999998 68888876542 232 3445


Q ss_pred             HHHHHHhhcCccEEEEcCCCCCCCCCccHH--HHHHh----CCeEEEecc---CCCCChHHHHHHHHhc
Q 014671          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAY--ALAKK----VGRYKQIKR---TEGVSSTDIVGRILSS  203 (420)
Q Consensus       144 fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~--~~lk~----~g~~~~v~r---~~~ISST~Ir~rI~~~  203 (420)
                      ++    +++++++++.|-.-  +.+.....  ....+    ..+.+.+..   ...||||.||+++..+
T Consensus        87 ~l----~~l~~~~~i~gl~~--w~d~~~~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~g  149 (173)
T 1vlh_A           87 YL----KKHGIKVLVRGLRA--VTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYG  149 (173)
T ss_dssp             HH----HHHTCCEEEEEECT--TSCHHHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             HH----HHhCCCeEEeCCCc--ccchhhccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHcC
Confidence            54    56788999988321  00101111  11111    122232222   2369999999999864

>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A

Probab=99.54  E-value=1.6e-14  Score=128.15  Aligned_cols=131  Identities=16%  Similarity=0.230  Sum_probs=96.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||+.++++|++.+|.++|.++.|.    .+.++++.+||+++++. +..+|.+.+......+.+.
T Consensus         1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~d~v~v~~~~~p----~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~~~~   76 (158)
T 1qjc_A            1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANF   76 (158)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SSCCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHH
T ss_pred             CCEEEEEecCCCCCHHHHHHHHHHHHhCCEEEEEECCCC----CCCCCCCHHHHHHHHHHHHhcCCCeEEcccchHHHHH
Confidence            478999999999999999999999999999999999875    23589999999999985 8999988875444567789


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHH-HHHhC----CeEEEeCCC--CCCCHHHHHHHHHhch
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYE-VAKSM----GIFQLLESP--KSITTTSVAQRIIANH  393 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~-~~k~~----G~~~~~~~~--~~~Stt~Ii~RI~~~~  393 (420)
                      ++++++++++.|.|...+ +  ....... ..+..    ..+..++.+  ..+|||.|.++|.++.
T Consensus        77 l~~l~~~~~v~G~d~~~~-~--~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~  139 (158)
T 1qjc_A           77 ARNQHATVLIRGLRAVAD-F--EYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQG  139 (158)
T ss_dssp             HHHTTCCEEEEECCTTCC-H--HHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             HHHcCCCEEEEeccchhh-h--HHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHcCC
Confidence            999999999999764222 1  0000000 11222    123333333  3699999999987664

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.54  E-value=1.3e-14  Score=138.74  Aligned_cols=94  Identities=23%  Similarity=0.328  Sum_probs=76.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHh-ccccccEEEeCCCc---
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDEVIANAPY---  138 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~-~~~~VD~vi~~~p~---  138 (420)
                      +++++++|+|||+|.||+.++++|++.+  |.++|+++.++.   .|..++++.++|++|++ ++.+++.+.+. +|   
T Consensus        23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~~~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~   98 (242)
T 1yum_A           23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRETPQVSAAQRLAMVERAVAGVERLTVD-PRELQ   98 (242)
T ss_dssp             CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGSCTTCCHHHHHHHHHHHHTTCTTEEEC-CGGGG
T ss_pred             ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCCCCCCCHHHHHHHHHHHhcCCCeEEEe-eeeec
Confidence            5678999999999999999999999998  999999998862   24457899999999998 46777877663 33   


Q ss_pred             ----cccHHHHHHHHhhcCcc---EEEEcCC
Q 014671          139 ----AITEQFMNRLFNEHKID---YIIHGDD  162 (420)
Q Consensus       139 ----~~~~~fl~~ll~~~~~d---~vV~G~D  162 (420)
                          .++.++++.+-.+++|+   ++++|.|
T Consensus        99 ~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A           99 RDKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             SSSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence                46678887766667677   8999986

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.54  E-value=1.5e-14  Score=132.65  Aligned_cols=134  Identities=17%  Similarity=0.123  Sum_probs=95.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-cccccEEEeCC-----
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIANA-----  136 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD~vi~~~-----  136 (420)
                      ++++++|+|||+|.||+.++++|++.+  |.+++.+++++.   .|. .++++.++|++|++. ++..+.+....     
T Consensus         3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~   79 (189)
T 2h29_A            3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR   79 (189)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred             eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence            578999999999999999999999987  888887877763   343 578999999999984 55555544421     


Q ss_pred             -CccccHHHHHHHHhhcCcc---EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccC-----------------CCCChHH
Q 014671          137 -PYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT-----------------EGVSSTD  195 (420)
Q Consensus       137 -p~~~~~~fl~~ll~~~~~d---~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~-----------------~~ISST~  195 (420)
                       ..+++.++++.+.+.+ |+   ++++|.|.......+..++.+-+...+..++|.                 ..||||.
T Consensus        80 ~~~syt~dtl~~l~~~~-p~~~~~~i~G~D~~~~~~~W~~~~~i~~~~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISST~  158 (189)
T 2h29_A           80 GGQSYTYDTIKAFKEQH-KDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTM  158 (189)
T ss_dssp             CSBCCHHHHHHHHHHHS-TTEEEEEEEEHHHHTTGGGSTTHHHHHHHCEEEEECCSSSCCCCCTTSEEECCCCBCCCHHH
T ss_pred             CCCCCHHHHHHHHHHHC-CCCcEEEEEecchhhhhccccCHHHHHhhCcEEEEECCCCccccCCcEEEEcCCCCccCHHH
Confidence             2335677887665555 66   899998853332333334444444555555553                 2599999


Q ss_pred             HHHHHHhc
Q 014671          196 IVGRILSS  203 (420)
Q Consensus       196 Ir~rI~~~  203 (420)
                      ||+++..+
T Consensus       159 IR~~i~~g  166 (189)
T 2h29_A          159 IRQRVSEG  166 (189)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            99999865

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.49  E-value=3.6e-14  Score=129.43  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-ccccc--EEEe-------
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD--EVIA-------  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD--~vi~-------  134 (420)
                      +++++++|+|||+|.||+.+++ |.+..|++++++.++.   +.| +++.+.++|++|++. ++...  .+..       
T Consensus         2 ~~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l   76 (177)
T 3h05_A            2 KKIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQAL   76 (177)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHH
T ss_pred             cEEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhc
Confidence            3589999999999999999998 7777799999998752   123 578999999999985 22221  1221       


Q ss_pred             -CCC-ccccHHHHHHHHhhcC-cc-EEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHHHhc
Q 014671          135 -NAP-YAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       135 -~~p-~~~~~~fl~~ll~~~~-~d-~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                       ... .++|.+.+..+.+.+. .+ ++++|.|.-.+...+..++.+-+...+..+++...||||+||++|.++
T Consensus        77 ~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g  149 (177)
T 3h05_A           77 YQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEKVKIRSTDIRNALIEG  149 (177)
T ss_dssp             C----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred             ccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchhHHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence             011 4466777877665552 33 688999954444445556667777789999998899999999999976

>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3

Probab=99.47  E-value=1.6e-13  Score=123.41  Aligned_cols=131  Identities=14%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~~~~~~~  334 (420)
                      ++++++.|+||++|.||+.++++|++.+|.++|.+..++    .+.++++.+||+++++. ++.+|.+.+......+.+.
T Consensus         2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~d~v~v~~~~~p----~k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~   77 (169)
T 1o6b_A            2 ASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SKKPLFSVEERCELLREVTKDIPNITVETSQGLLIDY   77 (169)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SSCCSSCHHHHHHHHHHHHTTCTTEEEEECSSCHHHH
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHhCCEEEEEECCCC----ccCCCCCHHHHHHHHHHHHhcCCCEEEcccchHHHHH
Confidence            478999999999999999999999999999999888653    22579999999999985 6888988775444567789


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhC--C-eEEE-eCCC--CCCCHHHHHHHHHhc
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM--G-IFQL-LESP--KSITTTSVAQRIIAN  392 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~--G-~~~~-~~~~--~~~Stt~Ii~RI~~~  392 (420)
                      ++.+++++++.|.|+..+ +. ...+.....+.+  | .... ++..  ..+|||.|.+++.+.
T Consensus        78 l~~l~~~~~i~G~d~~~~-~~-~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (169)
T 1o6b_A           78 ARRKNAKAILRGLRAVSD-FE-YEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD  139 (169)
T ss_dssp             HHHTTCSEEEEEECSGGG-HH-HHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTT
T ss_pred             HHHcCCCEEEEcCccccc-hH-HHHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHcC
Confidence            999999999999875332 10 000111112211  3 2222 3322  369999999998775

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.44  E-value=2.7e-13  Score=133.94  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=88.6

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccE----E--EeCCC
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE----V--IANAP  137 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~----v--i~~~p  137 (420)
                      .+++++++|+|||+|.||+.++++|++.+|.++|++.+++.-  .+....++.++|++|++.. ..|.    +  +....
T Consensus         6 ~~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p--~~~~~~~~~~~R~~m~~~~-~~~~~~~~~~~i~~~d   82 (341)
T 2qjo_A            6 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVA--ADTRNPWRSPERMAMIEAC-LSPQILKRVHFLTVRD   82 (341)
T ss_dssp             SEEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCC--CCSSSCSCHHHHHHHHHTT-SCHHHHTTEEEEEEEC
T ss_pred             eeeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccC--CCCCCCCCHHHHHHHHHHH-hhhccCCeEEEEECCC
Confidence            357899999999999999999999999999999888877532  2223458999999999974 3332    2  22211


Q ss_pred             c--ccc--HHHHHHHHhhcC---ccEEEEcCCCCCCCCCccHHHHHHhC--CeEEEeccCCCCChHHHHHHHHhc
Q 014671          138 Y--AIT--EQFMNRLFNEHK---IDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRILSS  203 (420)
Q Consensus       138 ~--~~~--~~fl~~ll~~~~---~d~vV~G~D~~~g~~g~~~~~~lk~~--g~~~~v~r~~~ISST~Ir~rI~~~  203 (420)
                      .  ...  .+|++++++.+.   ++++++|.++...    ..  ..+..  -....++....||||.||+++.++
T Consensus        83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~----~~--~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g  151 (341)
T 2qjo_A           83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDAS----SY--YLNLFPQWDYLETGHYPDFSSTAIRGAYFEG  151 (341)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGG----GG--GGGSCTTSEEEECCCCTTCCHHHHHHHHHHT
T ss_pred             CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCC----hH--HHHhccccceeecccCCCCCcHHHHHHHHcC
Confidence            1  111  356555555443   7899999886321    11  11222  244555545679999999999865

>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3

Probab=99.41  E-value=1.7e-12  Score=115.38  Aligned_cols=129  Identities=16%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCCCCchHHHHhh
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVTKDMITT  337 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~~~~~~~~i~~  337 (420)
                      +++.|+||++|.||+.++++|++.+|.++|.++.+..  ++..++++.++|+++++ +++.+|.+.+......+.+.+++
T Consensus         3 ~v~~GsFdp~H~GH~~l~~~a~~~~d~v~v~~~~~p~--k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~l~~   80 (160)
T 1od6_A            3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS--KRGQYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRR   80 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC-------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHHHHH
T ss_pred             EEEEeeeCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCHHHHHHHHHHHhcCCCCEEEEecCchHHHHHHH
Confidence            8899999999999999999999999999999986641  11127999999999997 46888987775444467889999


Q ss_pred             cCccEEEEcCCcCCCCCCCCCCChH-HHHHhC--C--eEEEeCCC--CCCCHHHHHHHHHhc
Q 014671          338 FNICLVVHGTVSETNTPLTGQSDPY-EVAKSM--G--IFQLLESP--KSITTTSVAQRIIAN  392 (420)
Q Consensus       338 ~~~d~vv~G~d~~~~~~~~~~~d~~-~~~k~~--G--~~~~~~~~--~~~Stt~Ii~RI~~~  392 (420)
                      +++++++.|.+...+ +  ...... ...+.+  +  .+..++.+  ..+|||.|.++|.++
T Consensus        81 l~~~~~v~G~d~~~~-~--~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~G  139 (160)
T 1od6_A           81 VGAQAIVKGLRAVSD-Y--EYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYG  139 (160)
T ss_dssp             TTCSEEEEEECTTSC-H--HHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTT
T ss_pred             cCCCEEEEeCCcccc-h--HHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHcC
Confidence            999999999762111 1  000000 012222  1  22233332  469999999998765

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=99.41  E-value=1.4e-12  Score=118.76  Aligned_cols=126  Identities=15%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccc----cEEEe-CCC-c
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV----DEVIA-NAP-Y  138 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~V----D~vi~-~~p-~  138 (420)
                      ++++++|+|||+|.||+.++++|++.+|.++|++.+...  ..|..++++.++|++|++.. ...    +.++. ..+ +
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~--p~~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d~~   81 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQL--SHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDI   81 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC--CSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCC
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCC--CcCCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecCcc
Confidence            479999999999999999999999999999998844332  22335678999999999863 222    33332 211 1


Q ss_pred             cccH---HHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhC-CeEEEeccCC--CCChHHHHHHHHhc
Q 014671          139 AITE---QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTE--GVSSTDIVGRILSS  203 (420)
Q Consensus       139 ~~~~---~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~-g~~~~v~r~~--~ISST~Ir~rI~~~  203 (420)
                      ....   +|++++.  ..++.+++|.|+        ....++.. ..+..++..+  .||||.||+++..+
T Consensus        82 ~~~~~w~~~~~~l~--~~~~~~v~gr~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G  142 (181)
T 1ej2_A           82 ECNALWVGHIKMLT--PPFDRVYSGNPL--------VQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  142 (181)
T ss_dssp             SCHHHHHHHHHHHS--CCCSEEECCCHH--------HHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHC--CCCCEEEECCHH--------HHHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcC
Confidence            1111   3444332  367889999774        11233333 3445555433  49999999999865

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.41  E-value=8.5e-14  Score=123.44  Aligned_cols=124  Identities=23%  Similarity=0.311  Sum_probs=83.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhC-CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc--cc----ccEEEeCCCcc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KW----VDEVIANAPYA  139 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lg-d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~--~~----VD~vi~~~p~~  139 (420)
                      +++++|+||++|.||+.++++|.+++ |+++|++++++...+. ..++++.++|++|++..  +.    +..+-+..+|.
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~-~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~g   80 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR-IRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYG   80 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHH-SCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTTT
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCcccccc-CCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCCC
Confidence            58999999999999999999999997 8999999999865322 36899999999999863  21    22222334443


Q ss_pred             ccHHHHHHHHhhcCccEEEEcCCCCCCCCCccHHH-HHHhCC----eEEEeccC-----CCCChHHHHHHHHh
Q 014671          140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-LAKKVG----RYKQIKRT-----EGVSSTDIVGRILS  202 (420)
Q Consensus       140 ~~~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~-~lk~~g----~~~~v~r~-----~~ISST~Ir~rI~~  202 (420)
                      .+.        .-++|++|++.+-..   +..... ..++.|    ++..++..     ..||||.||+++.+
T Consensus        81 ~~~--------~~~~d~ivvs~Et~~---~~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id  142 (148)
T 3do8_A           81 KTL--------DVDFEYLVVSPETYE---MALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEID  142 (148)
T ss_dssp             TTT--------TSCCSEEEECTTTHH---HHHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC
T ss_pred             CCC--------CCCCCEEEEChhhcc---cHHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHh
Confidence            321        247899999977422   111121 223333    34445432     24999999998774

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=4.5e-12  Score=127.17  Aligned_cols=92  Identities=23%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchh--hhhcCC-CCCCcHHHHHHHHhccccccEEEeCCCccc
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE--IIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAI  140 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~--i~~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p~~~  140 (420)
                      .++.|+++|.|||+|.||+.+|++|++ .+ ++++|.+.+.  +.  ++ +.+++.++|.++++.+ +||.|++ .||.+
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vie-lpF~~  124 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVE-GPPMG  124 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEE-CCCGG
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEE-cCchh
Confidence            456899999999999999999999999 55 5555555433  32  33 6799999999999997 9999998 55532


Q ss_pred             --c-HHHHHH---HHhhcCccEEEEcC
Q 014671          141 --T-EQFMNR---LFNEHKIDYIIHGD  161 (420)
Q Consensus       141 --~-~~fl~~---ll~~~~~d~vV~G~  161 (420)
                        + ++|++.   ++.++++++||+|.
T Consensus       125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          125 IMGSGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence              2 489876   78899999999998

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.35  E-value=9e-12  Score=112.13  Aligned_cols=126  Identities=19%  Similarity=0.305  Sum_probs=79.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEE-ecchhhhhcCCCCCCcHHHHHHHHhc-ccccc-EEEe--CCCcccc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVD-EVIA--NAPYAIT  141 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV-~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD-~vi~--~~p~~~~  141 (420)
                      +++++|+|||+|.||+.++++|++.+|.++|++ +.++   ..|..+.++.++|++|++. ++..+ .+..  -..+...
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~---p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~~   78 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQK---SHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFN   78 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTC---CSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCG
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcccH
Confidence            689999999999999999999999999999988 5443   2233346799999999984 44444 3322  1112111


Q ss_pred             HHHHHHHHh-hcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEeccCC--CCChHHHHHHHHhc
Q 014671          142 EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRTE--GVSSTDIVGRILSS  203 (420)
Q Consensus       142 ~~fl~~ll~-~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r~~--~ISST~Ir~rI~~~  203 (420)
                      ..+.+.+.+ ...+++++.|.++        ....+...+ .+...+..+  .||||.||+++..+
T Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g  136 (168)
T 1f9a_A           79 SIWVSYVESLTPPFDIVYSGNPL--------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (168)
T ss_dssp             GGHHHHHHHHSCCCSEEECCCHH--------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCEEEECcHH--------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcC
Confidence            223221111 2356777777542        112233322 334444333  59999999999865

>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*

Probab=99.33  E-value=1.9e-12  Score=118.08  Aligned_cols=134  Identities=12%  Similarity=0.028  Sum_probs=93.9

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEcCCC----
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPW----  328 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~~~~----  328 (420)
                      ++++++.|+||++|.||+.++++|++.+  |.+++.++.+...+ +..++++.+||+++++. ++.+|.+.+....    
T Consensus         2 ~~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k-~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~~   80 (189)
T 2qtr_A            2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHK-QGRNITSVESRLQMLELATEAEEHFSICLEELSRK   80 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTC-TTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSC
T ss_pred             CeEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCc-cCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhcCC
Confidence            4789999999999999999999999998  99999999876332 22479999999999984 7889998885432    


Q ss_pred             --CchHHHHhhcCccE------EEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeC-----------------CCCCCCHH
Q 014671          329 --EVTKDMITTFNICL------VVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE-----------------SPKSITTT  383 (420)
Q Consensus       329 --~~~~~~i~~~~~d~------vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~-----------------~~~~~Stt  383 (420)
                        ..+.+.++.++..+      ++.|.|+..+ +..+. +...+. ..+.+..++                 ....+|||
T Consensus        81 ~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~-~~~w~-~~~~l~-~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST  157 (189)
T 2qtr_A           81 GPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEY-LPKWY-NIEALL-DLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS  157 (189)
T ss_dssp             SCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHH-GGGST-THHHHT-TTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEehhhhhh-hhccC-CHHHHH-HhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence              45677888887666      9999875332 11222 222222 222222221                 12479999


Q ss_pred             HHHHHHHhch
Q 014671          384 SVAQRIIANH  393 (420)
Q Consensus       384 ~Ii~RI~~~~  393 (420)
                      .|.+++.+..
T Consensus       158 ~IR~~l~~g~  167 (189)
T 2qtr_A          158 LLRERYKEKK  167 (189)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999987654

>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*

Probab=99.31  E-value=1.3e-11  Score=113.35  Aligned_cols=135  Identities=11%  Similarity=0.035  Sum_probs=89.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCCC----
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPW----  328 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~~----  328 (420)
                      ++++++.|+||++|.||+.++++|++.+  |.++++++.+...+ ...++++.+||+++++ +++.+|.+.+....    
T Consensus         7 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~   85 (194)
T 1kam_A            7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHK-QNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMERE   85 (194)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC----------CHHHHHHHHHHHHTTCTTEEECCGGGSTT
T ss_pred             cEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCc-CCcCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcCC
Confidence            4789999999999999999999999988  99999998775321 1247899999999998 58899998884321    


Q ss_pred             --CchHHHHhhcCcc------EEEEcCCcCCCCCCCCCCChHHHHHhCC---------------eEEEe-CCCCCCCHHH
Q 014671          329 --EVTKDMITTFNIC------LVVHGTVSETNTPLTGQSDPYEVAKSMG---------------IFQLL-ESPKSITTTS  384 (420)
Q Consensus       329 --~~~~~~i~~~~~d------~vv~G~d~~~~~~~~~~~d~~~~~k~~G---------------~~~~~-~~~~~~Stt~  384 (420)
                        ..+.+.++.++..      +++.|.|+..+ +..|. +...+.+...               .+..+ .....+|||.
T Consensus        86 ~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~-~~~W~-~~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISST~  163 (194)
T 1kam_A           86 GPSYTFDTVSLLKQRYPNDQLFFIIGADMIEY-LPKWY-KLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTM  163 (194)
T ss_dssp             CCCSHHHHHHHHHHHSTTSEEEEEEETTTTTT-CCCCH-HHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHHH
T ss_pred             CCCChHHHHHHHHHHCCCCcEEEEEecchhhh-hcccc-CHHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCHHH
Confidence              3566777776655      99999986554 21111 1111111111               11111 1124799999


Q ss_pred             HHHHHHhch
Q 014671          385 VAQRIIANH  393 (420)
Q Consensus       385 Ii~RI~~~~  393 (420)
                      |.++|..+.
T Consensus       164 IR~~i~~g~  172 (194)
T 1kam_A          164 IRERFKSKK  172 (194)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHcCC
Confidence            999987664

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=99.31  E-value=4.4e-12  Score=123.53  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=59.2

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCC-----eEEEEE-ecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEeC--
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIAN--  135 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd-----~LiVgV-~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~~--  135 (420)
                      +++++++|+|||+|.||+.++++|++.++     .++|++ .+.+ ....| +++++.++|++|++. +...+.+...  
T Consensus         8 ~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~-~~~~K-~~l~s~~~R~~ml~~ai~~~~~~~v~~~   85 (279)
T 1kqn_A            8 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVG-DAYKK-KGLIPAYHRVIMAELATKNSKWVEVDTW   85 (279)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECC-GGGCC-TTCCCHHHHHHHHHHHTTTCSSEEECCT
T ss_pred             ceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCC-CCccc-cCCCCHHHHHHHHHHHhcCCCcEEEecc
Confidence            56889999999999999999999999873     254332 2221 11233 568999999999985 4566666542  


Q ss_pred             ----CCccccHHHHHHHHhhc
Q 014671          136 ----APYAITEQFMNRLFNEH  152 (420)
Q Consensus       136 ----~p~~~~~~fl~~ll~~~  152 (420)
                          ..+.+|.+.++.+-+++
T Consensus        86 E~~~~~~syTidtL~~l~~~~  106 (279)
T 1kqn_A           86 ESLQKEWKETLKVLRHHQEKL  106 (279)
T ss_dssp             GGGCSSCCCHHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHHH
Confidence                23455667776665556

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=99.29  E-value=6.1e-12  Score=123.30  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEE---EEEEecCc--cccC-C-CCCCCCHHHHHHhhhhccccceEEEc---CCC
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQ--IVRG-S-YHPIMHLHERSLSVLACRYVDEVIIG---APW  328 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~L---iVgV~~D~--~v~~-~-~~pi~~~~ER~~~v~~~~~VD~Vvi~---~~~  328 (420)
                      |++.|+||.+|.||..+|++|+++++.+   .|.++.|+  .+.+ . +.|+++++||+++++++. ++.|+.+   +. 
T Consensus         2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~F~~~a~-   79 (293)
T 1mrz_A            2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDFFRIKD-   79 (293)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECHHHHTT-
T ss_pred             EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEEhHHhhc-
Confidence            6789999999999999999999988752   35555554  2222 2 348999999999999998 6666654   21 


Q ss_pred             CchHHHHhh--cCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCC----CCCCCHHHHHHHHHhch
Q 014671          329 EVTKDMITT--FNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES----PKSITTTSVAQRIIANH  393 (420)
Q Consensus       329 ~~~~~~i~~--~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~----~~~~Stt~Ii~RI~~~~  393 (420)
                      ..+.+|++.  ++++++|.|.||....  ...-+...+.+.++.+..++.    ...+|||.|.+.|.+..
T Consensus        80 ls~~~Fi~~ill~~~~iVvG~Df~fG~--~~~g~~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G~  148 (293)
T 1mrz_A           80 LTPEGFVERYLSGVSAVVVGRDFRFGK--NASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEGR  148 (293)
T ss_dssp             CCHHHHHHHHCTTCCEEEEETTCCBSG--GGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHhcCCCEEEECCCCCCCC--CCCCCHHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcCc
Confidence            345778888  9999999999987642  112233344444456666664    35699999998886653

>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}

Probab=99.29  E-value=1.8e-13  Score=121.42  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=84.3

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcC-CEEEEEEecCccccCCCCCCCCHHHHHHhhhh-c-cc----cceEEEcCCCCc
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-C-RY----VDEVIIGAPWEV  330 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~g-d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~-~~----VD~Vvi~~~~~~  330 (420)
                      +|++.|+||++|.||+.++++|++++ |.|+|++++|+..+++..|+++.+||+++++. + +.    +.-+-+.+++..
T Consensus         2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~g~   81 (148)
T 3do8_A            2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYGK   81 (148)
T ss_dssp             CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTTTT
T ss_pred             EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCccccccCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCCCC
Confidence            48899999999999999999999997 99999999998663223599999999988865 4 32    333334555544


Q ss_pred             hHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCe----EEEeCC-----CCCCCHHHHHHHHHhchH
Q 014671          331 TKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI----FQLLES-----PKSITTTSVAQRIIANHE  394 (420)
Q Consensus       331 ~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~----~~~~~~-----~~~~Stt~Ii~RI~~~~~  394 (420)
                      +.    .-.+|++|-+.+...+     ........++.|.    +..++.     ...+|||.|.+++++.+.
T Consensus        82 ~~----~~~~d~ivvs~Et~~~-----~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id~~g  145 (148)
T 3do8_A           82 TL----DVDFEYLVVSPETYEM-----ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDRYG  145 (148)
T ss_dssp             TT----TSCCSEEEECTTTHHH-----HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC---
T ss_pred             CC----CCCCCEEEEChhhccc-----HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHhhcC
Confidence            42    3678889887653221     1112223344555    333332     345999999988877654

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=99.26  E-value=1.2e-11  Score=118.65  Aligned_cols=88  Identities=14%  Similarity=0.088  Sum_probs=58.7

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCe----EEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEe-----
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE----LVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~----LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~-----  134 (420)
                      +++++++|+|||+|.||+.++++|++.++.    .+|++...+.-...+.+++++.++|++|++. +...+.+..     
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~   85 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   85 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHh
Confidence            568999999999999999999999998742    4543333332111222468999999999984 444443332     


Q ss_pred             -CCCccccHHHHHHHHhhc
Q 014671          135 -NAPYAITEQFMNRLFNEH  152 (420)
Q Consensus       135 -~~p~~~~~~fl~~ll~~~  152 (420)
                       ...+.+|.+.++.+-+++
T Consensus        86 ~~~~~syTidtL~~l~~~~  104 (252)
T 1nup_A           86 EQAQWMETVKVLRHHHSKL  104 (252)
T ss_dssp             HSSSCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence             223456667776665555

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=99.24  E-value=5.5e-13  Score=129.51  Aligned_cols=114  Identities=15%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhc-CC--CCCCcHHHHHHHHhccccccEEEeCCCcccc-H
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E  142 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~-K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~-~  142 (420)
                      +|.+.|+||++|.||+.||++|++.+|.++|++..+|.-... ..  +.+.++++|+++++++ +||.++....-.+. +
T Consensus        23 ~V~~vgtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~-GVD~vf~p~~~~m~p~  101 (280)
T 2ejc_A           23 TIGFVPTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE-NVDCIFHPSVEEMYPP  101 (280)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT-TCSEEECCCHHHHSCT
T ss_pred             EEEEEcCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC-CCCEEEeCCHHHCCCc
Confidence            456669999999999999999999999999999666643211 11  3467899999999998 59999972211111 1


Q ss_pred             HHH--------HH-HHhhcCccE------------EEEcC-CCCCCCCCccHHHHHHhCCe
Q 014671          143 QFM--------NR-LFNEHKIDY------------IIHGD-DPCLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       143 ~fl--------~~-ll~~~~~d~------------vV~G~-D~~~g~~g~~~~~~lk~~g~  181 (420)
                      +|.        .+ +..+++|.+            .++|+ |+.||.++.+....++++++
T Consensus       102 ~f~~~v~~~~~~~~l~G~~rp~hF~Gv~tvv~kLf~iv~p~~~~FG~kd~qq~~~l~~~~~  162 (280)
T 2ejc_A          102 DFSTYVEETKLSKHLCGRSRPGHFRGVCTVVTKLFNIVKPHRAYFGQKDAQQFRVLRRMVR  162 (280)
T ss_dssp             TCCCCCCCCSGGGTTTGGGSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcceEEecCCCCCeecceEEEEeeeceeccCceEEeCCCCCcCHHHHHHHHH
Confidence            232        11 112234443            44454 89999999888888887653

>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*

Probab=99.23  E-value=6.8e-11  Score=112.79  Aligned_cols=92  Identities=18%  Similarity=0.140  Sum_probs=75.8

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCC----
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP----  327 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~----  327 (420)
                      .++++++.|+||++|.||+.++++|++.+  |.++|+++.|...  ++.++++.++|+++++ +++.++.|.+...    
T Consensus        22 ~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~--K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~   99 (242)
T 1yum_A           22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPH--RETPQVSAAQRLAMVERAVAGVERLTVDPRELQR   99 (242)
T ss_dssp             CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGG--GSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGS
T ss_pred             CceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCC--CCCCCCCHHHHHHHHHHHhcCCCeEEEeeeeecC
Confidence            36799999999999999999999999988  9999999988522  2247899999999998 5888999888542    


Q ss_pred             --CCchHHHHhhc----Ccc---EEEEcCC
Q 014671          328 --WEVTKDMITTF----NIC---LVVHGTV  348 (420)
Q Consensus       328 --~~~~~~~i~~~----~~d---~vv~G~d  348 (420)
                        ...+.+.++.+    +|+   +++.|.|
T Consensus       100 ~~~sytvdtl~~l~~~~~p~~~~~fI~G~D  129 (242)
T 1yum_A          100 DKPSYTIDTLESVRAELAADDQLFMLIGWD  129 (242)
T ss_dssp             SSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred             CCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence              24677877665    677   7899975

>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*

Probab=99.20  E-value=4.8e-11  Score=111.32  Aligned_cols=90  Identities=13%  Similarity=0.073  Sum_probs=72.9

Q ss_pred             eE-EEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcCC-----
Q 014671          257 RV-VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP-----  327 (420)
Q Consensus       257 ~i-V~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~~-----  327 (420)
                      +| +++.|+||++|.||+.++++|++.+  |.+++.++.+...  ++.++++.+||+++++ +++.+|.|.+...     
T Consensus         3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~--k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~   80 (213)
T 1k4m_A            3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPH--RPQPEANSVQRKHMLELAIADKPLFTLDERELKRN   80 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTT--SCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCS
T ss_pred             eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCC--CCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCC
Confidence            46 8999999999999999999999987  8999988877533  2237999999999997 7889999888531     


Q ss_pred             -CCchHHHHhhc----Ccc---EEEEcCC
Q 014671          328 -WEVTKDMITTF----NIC---LVVHGTV  348 (420)
Q Consensus       328 -~~~~~~~i~~~----~~d---~vv~G~d  348 (420)
                       ...+.++++.+    +|+   +++.|.|
T Consensus        81 ~~s~t~~~l~~l~~~~~~~~~~~~i~G~D  109 (213)
T 1k4m_A           81 APSYTAQTLKEWRQEQGPDVPLAFIIGQD  109 (213)
T ss_dssp             SCCCHHHHHHHHHHHHCTTSCEEEEEEHH
T ss_pred             CCCcHHHHHHHHHHHhCCCCcEEEEEehh
Confidence             13456777665    899   9999985

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.11  E-value=4.9e-10  Score=112.33  Aligned_cols=129  Identities=21%  Similarity=0.221  Sum_probs=82.8

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-----hhcCCCCCCcHHHHHHHHhc-cccccE-EE----
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSG-LKWVDE-VI----  133 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-----~~~K~~pi~t~eER~~ll~~-~~~VD~-vi----  133 (420)
                      ++++++.|+|||+|.||+.++++|.+++|+|+|+|.+++..     ...+.+..++.+||++|++. ++..+. +.    
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~   81 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHL   81 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEe
Confidence            35799999999999999999999999999999999999853     11121234999999999974 444332 11    


Q ss_pred             eCCCccc---c----HHHHHHHHh--hcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEec--c-CCCCChHHHHHHH
Q 014671          134 ANAPYAI---T----EQFMNRLFN--EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRI  200 (420)
Q Consensus       134 ~~~p~~~---~----~~fl~~ll~--~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~--r-~~~ISST~Ir~rI  200 (420)
                      .+.+...   .    .+.+..++.  .+++++++.++++.       .....+..+ +.+.++  + ...||||.||+..
T Consensus        82 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~-------~~~~~~~~~~e~v~l~~~~~~~~iSsT~IRe~~  154 (365)
T 1lw7_A           82 VEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQD-------KAPYEKYLGLEVSLVDPDRTFFNVSATKIRTTP  154 (365)
T ss_dssp             ECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGG-------HHHHHHHTCCEEECCCSSCCSSCCCHHHHHHCG
T ss_pred             ccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCC-------HHHHHHHcCCceEEeCCcccCCCCCHHHHHhCh
Confidence            1111111   0    122333444  36788777665531       112333443 445554  2 3479999999864

>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.6e-10  Score=105.18  Aligned_cols=131  Identities=13%  Similarity=0.074  Sum_probs=86.5

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccc--eEEEcC------
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVD--EVIIGA------  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD--~Vvi~~------  326 (420)
                      +++++..|+|||+|.||+.+++ |.+..|.|+++++.+.   ..+++.++.++|++|++. ++..+  .+.+..      
T Consensus         2 ~~igi~gGsFdPih~GHl~i~~-a~~~~d~v~~~p~~~~---~~k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~   77 (177)
T 3h05_A            2 KKIAIFGSAFNPPSLGHKSVIE-SLSHFDLVLLEPSIAH---AWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALY   77 (177)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHT-TCTTSSEEEEEECC----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC
T ss_pred             cEEEEEEeccchhhHHHHHHHH-HHHHCCEEEEEECCCC---CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcc
Confidence            5799999999999999999998 7777799999999862   133579999999988865 44432  344321      


Q ss_pred             --C-CCchHHHHhhc---Ccc---EEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHHHhch
Q 014671          327 --P-WEVTKDMITTF---NIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       327 --~-~~~~~~~i~~~---~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                        . ...|.+.++.+   -|+   +++.|.|.-.+ +..|. +...+.+.. .++.+++..++|+|.|.++|.+++
T Consensus        78 ~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~-l~~W~-~~~~l~~~~-~~vv~~r~~~iSST~IR~~i~~g~  150 (177)
T 3h05_A           78 QPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFK-FAKFY-KAEEITERW-TVMACPEKVKIRSTDIRNALIEGK  150 (177)
T ss_dssp             ----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHT-GGGST-THHHHHHHS-EEEECCCSSCCCHHHHHHHHHHTC
T ss_pred             cCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhh-cccch-hHHHHHHhC-CEEEEcCCCCCcHHHHHHHHHcCC
Confidence              1 22344444433   344   57889874332 22232 344455554 455677788999999999998764

>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*

Probab=99.08  E-value=3.2e-10  Score=103.72  Aligned_cols=134  Identities=15%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEcC------
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA------  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~------  326 (420)
                      ++++++.|+||++|.||+.++++|++.+  |.+++..+.+...+ +..++++.++|+++++ +++..+.|.+..      
T Consensus         2 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k-~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~~   80 (189)
T 2h29_A            2 KKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLK-KHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRG   80 (189)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTS-CCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHC
T ss_pred             ceEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCC-cCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcCC
Confidence            3689999999999999999999999887  88888777665332 2247899999999987 578888777742      


Q ss_pred             CCCchHHHHhhc---Ccc---EEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCC-----------------CCCCCHH
Q 014671          327 PWEVTKDMITTF---NIC---LVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES-----------------PKSITTT  383 (420)
Q Consensus       327 ~~~~~~~~i~~~---~~d---~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~-----------------~~~~Stt  383 (420)
                      ....+.+.++.+   .|+   +++.|.|...+ +..|. +...+.+.... ..+++                 ..++|+|
T Consensus        81 ~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~-~~~W~-~~~~i~~~~~~-~v~~R~~~~~~~~~~i~~~~~~~~~ISST  157 (189)
T 2h29_A           81 GQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQ-LEKWY-QIEYLKEMVTF-VVVNRDKNSQNVENAMIAIQIPRVDISST  157 (189)
T ss_dssp             SBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTT-GGGST-THHHHHHHCEE-EEECCSSSCCCCCTTSEEECCCCBCCCHH
T ss_pred             CCCCHHHHHHHHHHHCCCCcEEEEEecchhhh-hcccc-CHHHHHhhCcE-EEEECCCCccccCCcEEEEcCCCCccCHH
Confidence            122455555533   366   89999875333 22222 12223333221 11211                 2469999


Q ss_pred             HHHHHHHhch
Q 014671          384 SVAQRIIANH  393 (420)
Q Consensus       384 ~Ii~RI~~~~  393 (420)
                      .|.+++..+.
T Consensus       158 ~IR~~i~~g~  167 (189)
T 2h29_A          158 MIRQRVSEGK  167 (189)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999987653

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=99.05  E-value=6.6e-10  Score=110.91  Aligned_cols=134  Identities=15%  Similarity=0.121  Sum_probs=94.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCE---EEEEEecCccccC----C--CCCCCCHHHHHHhhhhccccceEEEcC
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF---LLVGIYTDQIVRG----S--YHPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~---LiVgV~~D~~v~~----~--~~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      ..+|++-|+||.+|.||..+|++|++.++.   ..|+++.|+.-..    .  +.++++++||+++++++. ||.|++..
T Consensus        15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~g-VD~v~v~~   93 (338)
T 2x0k_A           15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFG-IDGVLVID   93 (338)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhcC-CCEEEEcc
Confidence            357999999999999999999999998764   4788888774321    2  247999999999999987 99998743


Q ss_pred             C-----CCchHHHHhh-----cCccEEEEcCCcCCCCCCCCCCChHHH---HHhCC-eEEEeCC----CCCCCHHHHHHH
Q 014671          327 P-----WEVTKDMITT-----FNICLVVHGTVSETNTPLTGQSDPYEV---AKSMG-IFQLLES----PKSITTTSVAQR  388 (420)
Q Consensus       327 ~-----~~~~~~~i~~-----~~~d~vv~G~d~~~~~~~~~~~d~~~~---~k~~G-~~~~~~~----~~~~Stt~Ii~R  388 (420)
                      .     ...+.+|++.     ++++.+|.|.|+....-  ..-+...+   .+. | .+..++.    ...+|||.|.+.
T Consensus        94 F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~--r~g~~~~L~~~~~~-g~~V~~v~~~~~~~~~ISST~IR~~  170 (338)
T 2x0k_A           94 FTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGEN--AAGTADSLRQICQS-RLTVDVIDLLDDEGVRISSTTVREF  170 (338)
T ss_dssp             TTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGG--GCEEHHHHHHHTTT-TSEEEEECCCEETTEECSHHHHHHH
T ss_pred             ccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCC--CCCCHHHHHHHhcC-CeEEEEECcEecCCcccccchHHHH
Confidence            2     1235667765     68999999999865421  11122222   223 4 3445554    346999999988


Q ss_pred             HHhch
Q 014671          389 IIANH  393 (420)
Q Consensus       389 I~~~~  393 (420)
                      |.+..
T Consensus       171 L~~G~  175 (338)
T 2x0k_A          171 LSEGD  175 (338)
T ss_dssp             HHTTC
T ss_pred             HhcCc
Confidence            76654

>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*

Probab=99.03  E-value=1.7e-09  Score=98.35  Aligned_cols=125  Identities=18%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-cccc----ceEEEc--CCCC
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYV----DEVIIG--APWE  329 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~V----D~Vvi~--~~~~  329 (420)
                      +++++.|+||++|.||+.++++|++.+|.++|++.++..-. ++.++++.+||+++++. +...    |.+.+.  +...
T Consensus         4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~p~-~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d~~~   82 (181)
T 1ej2_A            4 MRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSH-SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIE   82 (181)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCS-SSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCS
T ss_pred             eEEEEEEEcCCcCHHHHHHHHHHHHhCCeeEEEECCCCCCc-CCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecCccC
Confidence            58999999999999999999999999999999995543221 23467899999998876 4544    455442  2111


Q ss_pred             ---chHHHHhhc--CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeCCCC--CCCHHHHHHHHHhch
Q 014671          330 ---VTKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLESPK--SITTTSVAQRIIANH  393 (420)
Q Consensus       330 ---~~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~~~~--~~Stt~Ii~RI~~~~  393 (420)
                         ...++++++  ..++++-|.++.           ....+..|. +..++...  .+|+|.|.+++..+.
T Consensus        83 ~~~~w~~~~~~l~~~~~~~v~gr~~~-----------~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~G~  143 (181)
T 1ej2_A           83 CNALWVGHIKMLTPPFDRVYSGNPLV-----------QRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDG  143 (181)
T ss_dssp             CHHHHHHHHHHHSCCCSEEECCCHHH-----------HHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCHHH-----------HHHHHhCCeEEEecCCCccCcCcHHHHHHHHHcCC
Confidence               223344443  456777665420           112233443 33444322  499999999987653

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.02  E-value=1.5e-09  Score=107.68  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc-c-----cc-EEEeCCC
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-W-----VD-EVIANAP  137 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~-~-----VD-~vi~~~p  137 (420)
                      +++++++|+||++|.||+.++++|.+++|.++|+|.+++..  .+..+.++.++|++|++..- .     .. .++....
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~--~~~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~~d   84 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNT--PNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLAD   84 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCC--CCSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCC--cccCCCCCHHHHHHHHHHHhccccCccceEEEEEcCC
Confidence            46899999999999999999999999999999999987632  12246789999999998531 1     11 1222111


Q ss_pred             c----cccHHHHHHHHhh---cCccEEEEcCCCCCCCCCccHHHHHHhCC--eEEEeccCCCCChHHHHHHHHh
Q 014671          138 Y----AITEQFMNRLFNE---HKIDYIIHGDDPCLLPDGTDAYALAKKVG--RYKQIKRTEGVSSTDIVGRILS  202 (420)
Q Consensus       138 ~----~~~~~fl~~ll~~---~~~d~vV~G~D~~~g~~g~~~~~~lk~~g--~~~~v~r~~~ISST~Ir~rI~~  202 (420)
                      +    ....+++.+.+.+   +.++++++|..-     +...+ .+.-..  .....+....+|||.||+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~-----~~~~~-~~~~~~~~~~~~~~~~~~iSST~IR~~~~~  152 (352)
T 2qjt_B           85 YFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIK-----DSSSY-YIRSFPEWDYIGVDNYKNFNATEFRQKFYN  152 (352)
T ss_dssp             CTTCHHHHHHHHHHHHTTTSCSSCCEEECCBSS-----SSHHH-HHHHCTTSEECCBCCTTCCCHHHHHHHHHT
T ss_pred             CcCChHHHHHHHHHHHHHhcccCCeEEEEcCCC-----Ccchh-hhhcCCccceeccCCCCCCCchHHHHHHhc
Confidence            1    1112444332221   235677777431     11222 222221  1223334457999999999985

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.01  E-value=4.3e-10  Score=112.76  Aligned_cols=69  Identities=23%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccc-----cCCC-CCCCCHHHHHHhhh-hccccce-EEE
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-----RGSY-HPIMHLHERSLSVL-ACRYVDE-VII  324 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v-----~~~~-~pi~~~~ER~~~v~-~~~~VD~-Vvi  324 (420)
                      ++++++.|+|||+|.||+.++++|++++|+|+|++++++.-     +..+ ++.++.+||++|++ +++..+. |.+
T Consensus         2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v   78 (365)
T 1lw7_A            2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFI   78 (365)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEE
T ss_pred             CcEEEEEEeeCCCCHHHHHHHHHHHHHCCEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEE
Confidence            57899999999999999999999999999999999999853     1121 33499999999995 5676655 444

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=99.01  E-value=1.5e-09  Score=106.83  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEE---EEEEecCccccC--------CCCCCCCHHHHHHhhhhccccceEEE
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVRG--------SYHPIMHLHERSLSVLACRYVDEVII  324 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~L---iVgV~~D~~v~~--------~~~pi~~~~ER~~~v~~~~~VD~Vvi  324 (420)
                      ...|++-|.||.+|.||..+|++|+++++.+   .|.++-|+.-+.        .+.++++++||.++++++. ||.+++
T Consensus        20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG-VD~v~~   98 (308)
T 3op1_A           20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELYL   98 (308)
T ss_dssp             SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEEE
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC-CCEEEE
Confidence            4689999999999999999999999988653   555665652221        1237999999999999998 999988


Q ss_pred             cCCC-----CchHHHH----hhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCC--eEEEeCC----CCCCCHHHHHHHH
Q 014671          325 GAPW-----EVTKDMI----TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMG--IFQLLES----PKSITTTSVAQRI  389 (420)
Q Consensus       325 ~~~~-----~~~~~~i----~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G--~~~~~~~----~~~~Stt~Ii~RI  389 (420)
                      -+..     ..+.+|+    ++++++.+|.|.||.... .....+  . ++..|  .+..++.    ...+|||.|.+-|
T Consensus        99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~~~--~-L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L  174 (308)
T 3op1_A           99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKTAE--D-LKNYFDGEVIIVPPVEDEKGKISSTRIRQAI  174 (308)
T ss_dssp             ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBCST--T-HHHHCSSEEEEECCCBCSSCBCCHHHHHHHH
T ss_pred             ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCCHH--H-HHHhCCCCEEEeCCEecCCceEeHHHHHHHH
Confidence            4321     1234444    478999999999987653 222221  1 22223  3555553    4569999999988


Q ss_pred             Hhch
Q 014671          390 IANH  393 (420)
Q Consensus       390 ~~~~  393 (420)
                      .+..
T Consensus       175 ~~G~  178 (308)
T 3op1_A          175 LDGN  178 (308)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            7654

>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3

Probab=99.00  E-value=4e-09  Score=94.69  Aligned_cols=124  Identities=20%  Similarity=0.245  Sum_probs=77.7

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccc-eEEE--cCCCC---c
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVD-EVII--GAPWE---V  330 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD-~Vvi--~~~~~---~  330 (420)
                      ++++.|+||++|.||+.++++|++.+|.++|+|.+...-. ++.+.++.++|+++++. ++..+ .+.+  .+.+.   .
T Consensus         2 i~i~~GsFdp~H~GH~~l~~~a~~~~d~v~v~v~~~~~p~-~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~~~~~   80 (168)
T 1f9a_A            2 RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSH-TLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNSI   80 (168)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCS-SSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGGG
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHHhCCeEEEEEcCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcccHHH
Confidence            6899999999999999999999999999999994432211 23356799999998874 66665 4433  22221   1


Q ss_pred             hHHHHhhc--CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeCCCC--CCCHHHHHHHHHhch
Q 014671          331 TKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLESPK--SITTTSVAQRIIANH  393 (420)
Q Consensus       331 ~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~~~~--~~Stt~Ii~RI~~~~  393 (420)
                      ..+.++++  ..++++.|.++           ...+....|+ +...+...  .+|+|.|.+++..+.
T Consensus        81 w~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~g~  137 (168)
T 1f9a_A           81 WVSYVESLTPPFDIVYSGNPL-----------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNGE  137 (168)
T ss_dssp             HHHHHHHHSCCCSEEECCCHH-----------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHTC
T ss_pred             HHHHHHHhccCCCEEEECcHH-----------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHcCC
Confidence            23333332  34555544321           0122233443 33333322  499999999987653

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=98.91  E-value=3.4e-09  Score=104.40  Aligned_cols=128  Identities=14%  Similarity=0.191  Sum_probs=84.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-ccc--ce--EEEcCCCC-
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYV--DE--VIIGAPWE-  329 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~V--D~--Vvi~~~~~-  329 (420)
                      ++++++.|+||++|.||+.++++|++.+|.++|+|.++..-. ++...++.++|+.|++.. ...  +.  +++++..- 
T Consensus         7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~d~v~v~v~~~~~p~-~~~~~~~~~~R~~m~~~~~~~~~~~~~~~i~~~d~~~   85 (341)
T 2qjo_A            7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAA-DTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLY   85 (341)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCCC-CSSSCSCHHHHHHHHHTTSCHHHHTTEEEEEEECCTT
T ss_pred             eeEEEEEEEeCCCCHHHHHHHHHHHHhCCeEEEEECCcccCC-CCCCCCCHHHHHHHHHHHhhhccCCeEEEEECCCCcC
Confidence            579999999999999999999999999999999999885332 233458999999998754 443  22  33343321 


Q ss_pred             ---chHH----HHhhcC---ccEEEEcCCcCCCCCCCCCCChHHHHHhC-C-eEEEeCCCCCCCHHHHHHHHHhch
Q 014671          330 ---VTKD----MITTFN---ICLVVHGTVSETNTPLTGQSDPYEVAKSM-G-IFQLLESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       330 ---~~~~----~i~~~~---~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-G-~~~~~~~~~~~Stt~Ii~RI~~~~  393 (420)
                         ...+    +++.+.   .++++-|.+.....        + ..+.. | ....++....+|+|.|.+++.+..
T Consensus        86 ~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~~~--------~-~~~~~~~~~~~~~~~~~~iSST~IR~~l~~g~  152 (341)
T 2qjo_A           86 SDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASS--------Y-YLNLFPQWDYLETGHYPDFSSTAIRGAYFEGK  152 (341)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSCEEEEECCCSGGG--------G-GGGSCTTSEEEECCCCTTCCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHHhHHhcCCCceEEEEcCCCCCCh--------H-HHHhccccceeecccCCCCCcHHHHHHHHcCC
Confidence               0122    333332   56777786542210        0 11122 3 344555567899999999987654

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=98.87  E-value=1.3e-10  Score=112.51  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=89.3

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhh-cCC--CCCCcHHHHHHHHhccccccEEEeCCCcc-c
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIANAPYA-I  140 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~-~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~~-~  140 (420)
                      -..|.+.|+   +|.||+.||++|++.++.++|.+..+|.-.. ...  +.+.++++|.++++++ +||.++.. +++ +
T Consensus        19 i~~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~-GvD~vf~p-~f~~m   93 (276)
T 1v8f_A           19 VGFVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFAP-GVEEM   93 (276)
T ss_dssp             EEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEECC-CHHHH
T ss_pred             ceEEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC-CCCEEEeC-ChHhC
Confidence            456889999   9999999999999999999999999886422 221  4689999999999997 79999962 221 1


Q ss_pred             c-HHHHHHHHhhcCccEEEEcC----------------------C-CCCCCCCccHHHHHHhCCe-----EEEe--c--c
Q 014671          141 T-EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR-----YKQI--K--R  187 (420)
Q Consensus       141 ~-~~fl~~ll~~~~~d~vV~G~----------------------D-~~~g~~g~~~~~~lk~~g~-----~~~v--~--r  187 (420)
                      . ++|...++...+++.+++|.                      | +.||.++.+....+++.++     +.++  +  +
T Consensus        94 ~p~~f~~~v~~~~~~~~vl~G~~RpghF~GV~TVv~kLf~iv~Pd~~~FG~kd~qq~~~l~~~~~dl~~~v~iv~~p~vr  173 (276)
T 1v8f_A           94 YPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEKDYQQLLVVRRMVRDLGFPVEVVGVPTVR  173 (276)
T ss_dssp             SCTTCCEEEEECSHHHHSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCCB
T ss_pred             CCcCCeEEEEecCCcceEEecCCCCCeecceeehhhHhhcccCCCEEEECCCCCcCHHHHHHHHHHcCCeEEEEecCcEE
Confidence            1 12322111112344555666                      8 9999998888888887653     2222  3  3


Q ss_pred             C-CC--CChHHHH
Q 014671          188 T-EG--VSSTDIV  197 (420)
Q Consensus       188 ~-~~--ISST~Ir  197 (420)
                      . .|  +|||.++
T Consensus       174 ~~dGlaiSSrnir  186 (276)
T 1v8f_A          174 EEDGLALSSRNVY  186 (276)
T ss_dssp             CTTSCBCCGGGGG
T ss_pred             cCCCCEeEEeEEE
Confidence            2 33  8999886

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.85  E-value=9.8e-09  Score=101.76  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhh
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLA  315 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~  315 (420)
                      ++++++.|+|||+|.||+.++++|++++|.|+|+|.++..-. ++++.++.+||++|++.
T Consensus         7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~d~~~~~v~~~~~~~-~~~~~~~~~~R~~m~~~   65 (352)
T 2qjt_B            7 YDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTP-NIKNPFSFEQRKQMIES   65 (352)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCCC-CSSSCSCHHHHHHHHHH
T ss_pred             ccEEEEEEecCCCChHHHHHHHHHHHhCCcEEEEECCCCCCc-ccCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999999999976332 33467899999988865

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=98.71  E-value=1.9e-09  Score=104.70  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhh-cCC--CCCCcHHHHHHHHhccccccEEEeCCCc-ccc-H
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKG--PPVLSMEERLALVSGLKWVDEVIANAPY-AIT-E  142 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~-~K~--~pi~t~eER~~ll~~~~~VD~vi~~~p~-~~~-~  142 (420)
                      |.+.|.   +|.||+.||++|++.++.++|.+..+|.-.. ...  ..+.+.+++.++++.+ +||.++.. ++ .+. +
T Consensus        28 VpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf~p-~~~~myp~  102 (283)
T 3ag6_A           28 IPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVFHP-AVEDMYPG  102 (283)
T ss_dssp             EEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEECC-CHHHHSCS
T ss_pred             EECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC-CHHHCCCC
Confidence            459997   9999999999999999988888888875322 221  4588999999999997 89999972 22 111 1


Q ss_pred             HH--------HHH-HHhhcCcc-------------EEEEcCCCCCCCCCccHHHHHHhCCe
Q 014671          143 QF--------MNR-LFNEHKID-------------YIIHGDDPCLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       143 ~f--------l~~-ll~~~~~d-------------~vV~G~D~~~g~~g~~~~~~lk~~g~  181 (420)
                      +|        +.+ +...++|.             .+|.|+|+.||.+..+....++++++
T Consensus       103 ~f~~~v~~~~l~~~L~G~~rp~hF~GV~TVV~KLf~iV~p~~~~FG~Kd~qql~~l~~m~~  163 (283)
T 3ag6_A          103 ELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVK  163 (283)
T ss_dssp             SCSEEEEECGGGSSTHHHHSTTHHHHHHHHHHHHHHHHCCSEEEEEGGGHHHHHHHHHHHH
T ss_pred             CceEEEeccccchhhccCCCCCeecchhhHhhhhcEEecCceEEECCCCccCHHHHHHHHH
Confidence            23        222 12237888             89999999999999888888887653

>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*

Probab=98.70  E-value=3.6e-08  Score=94.33  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCE----EEEEEecCccccC-CCCCCCCHHHHHHhhh-hccccceEEEcC---
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDF----LLVGIYTDQIVRG-SYHPIMHLHERSLSVL-ACRYVDEVIIGA---  326 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~----LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~-~~~~VD~Vvi~~---  326 (420)
                      ++++++.|+||++|.||+.++++|++.++.    .+||+.-...... .+.++++.++|++|++ +++..+.+.+.+   
T Consensus         6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~   85 (252)
T 1nup_A            6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   85 (252)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHh
Confidence            578999999999999999999999987643    6776443333222 3347899999998886 567767776632   


Q ss_pred             ---CCCchHHHHhhc
Q 014671          327 ---PWEVTKDMITTF  338 (420)
Q Consensus       327 ---~~~~~~~~i~~~  338 (420)
                         .+..|.+.++.+
T Consensus        86 ~~~~~syTidtL~~l  100 (252)
T 1nup_A           86 EQAQWMETVKVLRHH  100 (252)
T ss_dssp             HSSSCCCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHH
Confidence               234455555444

>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*

Probab=98.67  E-value=3.4e-08  Score=96.00  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccccCCHHHHHHHHHHHhcCC-----EEEEEEecCccccCCCCCCCCHHHHHHhhhh-ccccceEEEc
Q 014671          254 PNARVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVRGSYHPIMHLHERSLSVLA-CRYVDEVIIG  325 (420)
Q Consensus       254 ~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd-----~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~-~~~VD~Vvi~  325 (420)
                      +..+++++.|+||++|.||+.++++|++.++     .++|++..-......+.++++.++|++|++. +...+.+.+.
T Consensus         6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~~~~~~~v~   83 (279)
T 1kqn_A            6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVD   83 (279)
T ss_dssp             CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhcCCCcEEEe
Confidence            3467899999999999999999999998763     3666543221111233478999999999864 5778888774

>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}

Probab=98.58  E-value=7.2e-08  Score=93.58  Aligned_cols=70  Identities=16%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEec--CccccCC--CCCCCCHHHHHHhhhhccccceEEEcC
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYT--DQIVRGS--YHPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~--D~~v~~~--~~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      +++++++ |+||.+|.||+.+|++|++.+|.+||++..  +++....  ...+.++++|+++++++. ||.|+...
T Consensus        21 g~~V~~v-gtfdgLH~GH~sLI~~A~~~ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~G-VD~vf~p~   94 (280)
T 2ejc_A           21 KKTIGFV-PTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKEN-VDCIFHPS   94 (280)
T ss_dssp             TCCEEEE-EECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTTT-CSEEECCC
T ss_pred             CCEEEEE-cCCccccHHHHHHHHHHHHhCCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHCC-CCEEEeCC
Confidence            5678888 899999999999999999999999999954  4444331  234678999999999998 99999853

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=98.53  E-value=1.1e-08  Score=99.97  Aligned_cols=112  Identities=16%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHH-hCCeEEEEEecchhhhhcCC---CCCCcHHHHHHHHhccccccEEEeCCCc-ccc
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANAPY-AIT  141 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~-lgd~LiVgV~sd~~i~~~K~---~pi~t~eER~~ll~~~~~VD~vi~~~p~-~~~  141 (420)
                      +|-+..++..+|.||+.||++|++ .++.++|.+..+|.-...+.   ..+.++++++++++.+ +||.++.. ++ .+.
T Consensus        34 ~vg~VpTmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~p-~~~~my  111 (301)
T 3cov_A           34 RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFTP-TTAAMY  111 (301)
T ss_dssp             EEEEEEECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEECC-CHHHHC
T ss_pred             cEEEEecCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC-CHHHCC
Confidence            344444555599999999999999 99988888888875322222   3588999999999997 89999972 22 111


Q ss_pred             -HHHHHHHHhhcCccEEEEcC-----------------------CCCCCCCCccHHHHHHhCCe
Q 014671          142 -EQFMNRLFNEHKIDYIIHGD-----------------------DPCLLPDGTDAYALAKKVGR  181 (420)
Q Consensus       142 -~~fl~~ll~~~~~d~vV~G~-----------------------D~~~g~~g~~~~~~lk~~g~  181 (420)
                       ++|...+... ++..+++|.                       |+.||.+..+....++++++
T Consensus       112 P~~f~~~v~~~-~~~~vl~G~~RPghF~GV~TVV~KLfniv~P~~a~FG~Kd~qql~~lr~mv~  174 (301)
T 3cov_A          112 PDGLRTTVQPG-PLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVA  174 (301)
T ss_dssp             TTCSCSEEECC-GGGGSGGGSSCTTHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHH
T ss_pred             CCCceEEEecC-CcceeeecCCCCChhhhhhHHHHHHhhccCCCeEEECCCcccCHHHHHHHHH
Confidence             1232211111 345566777                       99999999888888887654

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=98.34  E-value=2.8e-06  Score=84.94  Aligned_cols=133  Identities=15%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc-cc---cEE-EeCCCccc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAPYAI  140 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~-~V---D~v-i~~~p~~~  140 (420)
                      ++|++.|+||++|.||..++++|.+.+|.+++-+.-.+    .| +--.+.+.|+++++.+- ..   +.+ +...|+.+
T Consensus       156 ~~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g~----~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m  230 (349)
T 1v47_A          156 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILGA----KK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPM  230 (349)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCSC----CC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCC
T ss_pred             CeEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHh
Confidence            46888999999999999999999999998776665332    23 45689999999998631 11   112 22233332


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC--CC-CCCccHHHHHHhCC----eEEEecc--------------------
Q 014671          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC--LL-PDGTDAYALAKKVG----RYKQIKR--------------------  187 (420)
Q Consensus       141 ~-----~~fl~~ll-~~~~~d~vV~G~D~~--~g-~~g~~~~~~lk~~g----~~~~v~r--------------------  187 (420)
                      .     +..+..++ +.++|.++++|.|..  .. .+..+.-+.++...    ++..+++                    
T Consensus       231 ~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~~~~l~i~~v~~~~~~Y~~~~~~~~~~~~~p~~~  310 (349)
T 1v47_A          231 RYAGPKEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGH  310 (349)
T ss_dssp             CCCTHHHHHHHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETTTTEEEETTTSCGGG
T ss_pred             hcCCcHHHHHHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHhhhhcCceEEeccccEEcccCCceEEccccCccC
Confidence            1     23355544 458999999999974  11 22233333444431    3222111                    


Q ss_pred             C---CCCChHHHHHHHHhc
Q 014671          188 T---EGVSSTDIVGRILSS  203 (420)
Q Consensus       188 ~---~~ISST~Ir~rI~~~  203 (420)
                      .   -.||||+||+++.++
T Consensus       311 ~~~~~~ISgT~iR~~L~~G  329 (349)
T 1v47_A          311 REKRTAISMTKVRALLREG  329 (349)
T ss_dssp             GGGCEECCHHHHHHHHHTT
T ss_pred             CCcccccCHHHHHHHHHCc
Confidence            0   138999999999876

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=98.34  E-value=5e-06  Score=84.44  Aligned_cols=133  Identities=17%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc-cc---cEE-EeCCCc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WV---DEV-IANAPY  138 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~-~V---D~v-i~~~p~  138 (420)
                      ++|++.|+||++|.||..++++|.+..  |.|++.+.-.+    .| +--.+.+.|+++++.+- ..   +.+ +...|+
T Consensus       193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~  267 (396)
T 1jhd_A          193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGF  267 (396)
T ss_dssp             SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechH
Confidence            468889999999999999999999987  77666555432    23 45688999999988631 11   111 111223


Q ss_pred             cc-----cHHHHHHHH-hhcCccEEEEcCCCC---CCCCCccHHHHHHhC-------CeEEEecc---------------
Q 014671          139 AI-----TEQFMNRLF-NEHKIDYIIHGDDPC---LLPDGTDAYALAKKV-------GRYKQIKR---------------  187 (420)
Q Consensus       139 ~~-----~~~fl~~ll-~~~~~d~vV~G~D~~---~g~~g~~~~~~lk~~-------g~~~~v~r---------------  187 (420)
                      .+     ++..+..++ +.+++.++++|.|..   ...+..+..+.++..       .+++.+++               
T Consensus       268 ~m~~aGPreailhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~~~~~~~l~i~iv~~~~~~Y~~~~~~~~~~~~  347 (396)
T 1jhd_A          268 DMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRD  347 (396)
T ss_dssp             CCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGG
T ss_pred             HhhcCCchHHHHHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHhcccccccceeEEecccceecCCCCeEEEccc
Confidence            22     123344444 458999999999974   123333444455542       23333322               


Q ss_pred             -----C---CCCChHHHHHHHHhc
Q 014671          188 -----T---EGVSSTDIVGRILSS  203 (420)
Q Consensus       188 -----~---~~ISST~Ir~rI~~~  203 (420)
                           .   -.||||+||+++.++
T Consensus       348 ~p~~~~~~~~~ISgT~IR~~L~~G  371 (396)
T 1jhd_A          348 VPDHTKEDFVLLSGTKVREMLGQG  371 (396)
T ss_dssp             CTTCCGGGEECCCHHHHHHHHHTT
T ss_pred             cCcccCCCccccCHHHHHHHHHCC
Confidence                 0   149999999999876

>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}

Probab=98.24  E-value=3.4e-06  Score=84.49  Aligned_cols=90  Identities=13%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcc--ccCCCCCCCCHHHHHHhhhhccccceEEEcCCC--Cc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI--VRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW--EV  330 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~--v~~~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~--~~  330 (420)
                      ++++|.+=|.||+||.||..+|++|++ .+ ++++|-+-..  +.+|...+++..+|+++++.+ .||.|+.-+..  ..
T Consensus        51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~~-~~~~Vms~~~~~vqrg~~~l~~~~~R~~~~~~~-GvD~vielpF~~~~s  127 (357)
T 3gmi_A           51 KDKIVCDFTEYNPLHKGHKYALEKGKE-HG-IFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA-GADIVVEGPPMGIMG  127 (357)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHT-SS-EEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHH-TCSEEEECCCGGGSC
T ss_pred             CCCEEEEEEecCccCHHHHHHHHHHHH-cC-CeEEEEcCchHHhcCCCCcCCCHHHHHHHHHHC-CCCEEEEcCchhhCC
Confidence            457899999999999999999999999 55 5666665444  555555899999999999998 79999885431  13


Q ss_pred             hHHHHh-------hcCccEEEEcC
Q 014671          331 TKDMIT-------TFNICLVVHGT  347 (420)
Q Consensus       331 ~~~~i~-------~~~~d~vv~G~  347 (420)
                      +.+|++       .++++.+|.|.
T Consensus       128 ~~~Fv~~~v~ll~~l~~~~iv~G~  151 (357)
T 3gmi_A          128 SGQYMRCLIKMFYSLGAEIIPRGY  151 (357)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECC
Confidence            345554       58999999997

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=97.51  E-value=0.00013  Score=70.41  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhh-hcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      +|-+..++.++|.||+.|+++|++.+|.++|.+..+|.-. +...  +.+.++++++++++.+ +||.++.
T Consensus        23 ~ig~VPTMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~   92 (283)
T 3uk2_A           23 RTAFVPTMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA   92 (283)
T ss_dssp             SCEEEEECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred             eEEEECCCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence            5777789999999999999999999998888888777532 1222  5688999999999997 8998885

>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A

Probab=96.98  E-value=0.0019  Score=62.37  Aligned_cols=64  Identities=20%  Similarity=0.337  Sum_probs=53.6

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-C---CCCCCCHHHHHHhhhhccccceEEEc
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-S---YHPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~---~~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      .|.+-|.   +|.||..++++|++.+|.++|.+..++.--. +   ...+.++++|.+.++++. ||.|+..
T Consensus        21 ~VpTmG~---lH~GH~~Li~~A~~~a~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~G-vD~vf~p   88 (276)
T 1v8f_A           21 FVPTMGY---LHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAG-VDLLFAP   88 (276)
T ss_dssp             EEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTT-CSEEECC
T ss_pred             EEEeCCC---ccHHHHHHHHHHHHhCCEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhCC-CCEEEeC
Confidence            4667787   9999999999999999999999999875433 2   236899999999999986 9998874

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=96.96  E-value=0.002  Score=63.02  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             HhhcccCCCCceEEE--EecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-hhcCC--CCCCcHHHHHHHHhccccc
Q 014671           55 FHKKKCGKKKRVRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWV  129 (420)
Q Consensus        55 ~~~~~~~~~~~~~V~--~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-~~~K~--~pi~t~eER~~ll~~~~~V  129 (420)
                      ....|++++ .++++  |.|   .+|.||+.|+++|++.+|.++|.+.-+|.= .+...  ...-++++.++++++. +|
T Consensus        34 ~~~~~r~~g-~~IgfVPTMG---~LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-Gv  108 (314)
T 3inn_A           34 ALAPARQQG-KKIGFVPTMG---YLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QV  108 (314)
T ss_dssp             HHHHHHHTT-CCEEEEEECS---SCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TC
T ss_pred             HHHHHHHcC-CeEEEEcCCC---ccCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CC
Confidence            344444433 35566  777   599999999999999999999998877742 22222  4567899999999986 89


Q ss_pred             cEEEe
Q 014671          130 DEVIA  134 (420)
Q Consensus       130 D~vi~  134 (420)
                      |.|+.
T Consensus       109 D~vF~  113 (314)
T 3inn_A          109 DYLFA  113 (314)
T ss_dssp             SEEEC
T ss_pred             CEEEC
Confidence            98875

>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*

Probab=96.63  E-value=0.0059  Score=59.11  Aligned_cols=67  Identities=16%  Similarity=0.285  Sum_probs=53.8

Q ss_pred             CCeEEE--EcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEc
Q 014671          255 NARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       255 ~~~iV~--~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      +++|++  +-|.   +|.||..++++|++.+|.++|.+..++.--. +.   ..+.+++++.+.++++. ||.|+..
T Consensus        22 g~~I~fVpTmG~---lH~GH~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~G-vD~vf~p   94 (283)
T 3ag6_A           22 GTTIGFIPTMGA---LHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVG-ADIVFHP   94 (283)
T ss_dssp             TCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHT-CSEEECC
T ss_pred             CCcEEEEECCcc---ccHHHHHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeC
Confidence            456766  7786   9999999999999999999999988864432 21   24788999999988875 9988874

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=96.45  E-value=0.0031  Score=60.98  Aligned_cols=39  Identities=23%  Similarity=0.569  Sum_probs=34.9

Q ss_pred             CCCeEEE--EcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcc
Q 014671          254 PNARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI  295 (420)
Q Consensus       254 ~~~~iV~--~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~  295 (420)
                      .+++|++  +-|+   +|.||+.++++|++.||.+||+|.-++.
T Consensus        23 ~g~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~   63 (287)
T 3q12_A           23 EGKRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPL   63 (287)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGG
T ss_pred             cCCeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence            3578888  7797   9999999999999999999999998864

>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*

Probab=96.40  E-value=0.0038  Score=60.34  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             hhcccCCCCceEEE--EecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhh-hcCC--CCCCcHHHHHHHHhcccccc
Q 014671           56 HKKKCGKKKRVRVY--MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVD  130 (420)
Q Consensus        56 ~~~~~~~~~~~~V~--~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD  130 (420)
                      ...|++++ .++++  |.|+   +|-||+.|+++|++.+|.++|++.-+|.=. ....  ...-++++=++++++. +||
T Consensus        17 ~~~~r~~g-~~IgfVPTMG~---LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~-gvd   91 (287)
T 3q12_A           17 IRRWRQEG-KRIALVPTMGN---LHEGHMTLVDEAKTRADVVVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH-GAD   91 (287)
T ss_dssp             HHHHHHTT-CCEEEEEECSS---CCHHHHHHHHHHHTTSSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH-TCS
T ss_pred             HHHHHHcC-CeEEEEcCCCc---ccHHHHHHHHHHHHhCCEEEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCC
Confidence            34444433 35666  8896   999999999999999999999987766311 1011  2334567777778775 889


Q ss_pred             EEEe
Q 014671          131 EVIA  134 (420)
Q Consensus       131 ~vi~  134 (420)
                      .|+.
T Consensus        92 ~vF~   95 (287)
T 3q12_A           92 LVFA   95 (287)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8875

>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...

Probab=96.12  E-value=0.012  Score=57.48  Aligned_cols=62  Identities=16%  Similarity=0.276  Sum_probs=49.2

Q ss_pred             ccccCCHHHHHHHHHHHh-cCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEcC
Q 014671          264 AFDLFHAGHVEILKKARQ-LGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIGA  326 (420)
Q Consensus       264 ~FDl~H~GHi~~L~~Ak~-~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~~  326 (420)
                      ++.-+|.||..++++|++ .+|.+||.+..++.--. +.   ....+++++.+.++++. ||.|+...
T Consensus        40 TmG~LH~GH~sLI~~A~~~~a~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~G-VD~vf~p~  106 (301)
T 3cov_A           40 TMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEG-VEIAFTPT  106 (301)
T ss_dssp             ECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTT-CCEEECCC
T ss_pred             cCCcccHHHHHHHHHHHHhcCCEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeCC
Confidence            333499999999999999 99999999998874432 21   24788999999988886 89888743

>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}

Probab=95.62  E-value=0.028  Score=54.92  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             CCCeEEE--EcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEc
Q 014671          254 PNARVVY--IDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       254 ~~~~iV~--~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      .+++|++  +-|.   +|.||+.++++|++.+|.+||.|..++.=-. +.   +-.-++++....+++. .||.|...
T Consensus        41 ~g~~IgfVPTMG~---LH~GHlsLi~~A~~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-GvD~vF~P  114 (314)
T 3inn_A           41 QGKKIGFVPTMGY---LHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QVDYLFAP  114 (314)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TCSEEECC
T ss_pred             cCCeEEEEcCCCc---cCHHHHHHHHHHHHhCCEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CCCEEECC
Confidence            4578888  7785   9999999999999999999999998875332 11   1345666667766665 48866543

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=95.28  E-value=0.034  Score=53.68  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             EecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-hhcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           70 MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        70 ~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-~~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      |.|.   +|-||+.|+++|++ +|.++|.+.-+|.= .+...  ...-++++=++++++. +||.|+.
T Consensus        32 TMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (285)
T 3mxt_A           32 TMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDMVFI   94 (285)
T ss_dssp             ECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             CCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            6665   99999999999999 99999998776641 11222  3445677777888875 8998875

>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0

Probab=95.18  E-value=0.046  Score=52.76  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-C---CCCCCCHHHHHHhhhhccccceEEEc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-S---YHPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~---~~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      +++|++++ +..-+|.||..++++|++.+|.++|.+..++.--. +   ..-..+++++...++++ .||.|+..
T Consensus        21 g~~ig~VP-TMG~LH~GH~sLi~~A~~~~d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~P   93 (283)
T 3uk2_A           21 QNRTAFVP-TMGNLHEGHLSLMRLARQHGDPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFAP   93 (283)
T ss_dssp             CSSCEEEE-ECSSCCHHHHHHHHHHHTTCSSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEECC
T ss_pred             CCeEEEEC-CCCcccHHHHHHHHHHHHhCCEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence            45666554 77789999999999999999999999988775432 1   22577888888887776 48877664

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5

Probab=95.15  E-value=0.15  Score=51.45  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             eEEEEecccCcCCHHHHHH-HHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccc---ccEEEe-CCCccc
Q 014671           66 VRVYMDGCFDLMHYGHANA-LRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW---VDEVIA-NAPYAI  140 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~l-L~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~---VD~vi~-~~p~~~  140 (420)
                      ++|++..+++++|.||..+ .+.|.+.++.|++-+.    +-..| +-=++.+-|++..+.+.-   -+.++. ..|+.+
T Consensus       188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lllhPl----vG~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~m  262 (395)
T 1r6x_A          188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPV----VGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM  262 (395)
T ss_dssp             CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCB----CSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBC
T ss_pred             CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEEEEC----CCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchhh
Confidence            4688899999999999555 5555665675443222    21122 334788999888776321   122332 223322


Q ss_pred             -----cHHHHHHHH-hhcCccEEEEcCCCC
Q 014671          141 -----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       141 -----~~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                           .+..+..++ +.++|.++++|.|..
T Consensus       263 ryAGPrEai~HAiiRkN~GcthfIVGRDhA  292 (395)
T 1r6x_A          263 RMSGDREAVWHAIIRKNYGASHFIVGRDHA  292 (395)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hhcCcHHHHHHHHHHHHcCCceEEECCCCC
Confidence                 133455555 459999999999975

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.04  E-value=0.49  Score=49.37  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             eEEEEecccCcCCHHHH-HHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcccc---ccEEEe-CCCccc
Q 014671           66 VRVYMDGCFDLMHYGHA-NALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW---VDEVIA-NAPYAI  140 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~-~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~---VD~vi~-~~p~~~  140 (420)
                      ++|++..+++++|.||. .+.+.|.+.++.|++-+.--    ..| +-=++.+-|++..+.+.-   -+.++. ..|+.+
T Consensus       189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g----~~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m  263 (511)
T 1g8f_A          189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVG----LTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAM  263 (511)
T ss_dssp             CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCS----BCS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBC
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCC----CCC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecchhh
Confidence            46888999999999995 55566666677655444321    122 334788999988876421   122222 233332


Q ss_pred             c-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          141 T-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       141 ~-----~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      -     +..+..++ +.++|.++++|.|..
T Consensus       264 ~yaGprea~~hai~r~n~G~th~IvGrdhA  293 (511)
T 1g8f_A          264 RMSGDREAVWHAIIRKNYGASHFIVGRDHA  293 (511)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             hccCcHHHHHHHHHHHhCCCceEEeCCCCC
Confidence            1     33455545 459999999999974

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=94.75  E-value=0.054  Score=51.58  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=46.1

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhh-hcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~-~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      ++-+.-+.-.+|-||+.|+++|++.+|.++|.+.-+|.=. ....  ...-++++=+++++.. +||.++.
T Consensus        25 ~ig~VPTMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~   94 (264)
T 3n8h_A           25 KIGFVPTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL-DVDVLFN   94 (264)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence            3444455558999999999999999999998887766311 0000  2234566667777775 7887775

>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*

Probab=94.64  E-value=0.078  Score=51.11  Aligned_cols=67  Identities=24%  Similarity=0.328  Sum_probs=44.2

Q ss_pred             CCCeEEEE--cCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEc
Q 014671          254 PNARVVYI--DGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       254 ~~~~iV~~--~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      .+++|.++  -|.   +|.||+.++++|++ +|.+||.|.-++.=.. +.   +-.-++++=...+++. .||.|..+
T Consensus        23 ~g~~Ig~VPTMGa---LH~GHlsLv~~Ar~-~d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~P   95 (285)
T 3mxt_A           23 HQLSIGYVPTMGF---LHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN-GVDMVFIP   95 (285)
T ss_dssp             TTCCEEEEEECSS---CCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT-TCSEEECC
T ss_pred             cCCeEEEEcCCCc---ccHHHHHHHHHHHh-CCEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC-CCCEEECC
Confidence            35677774  475   99999999999999 9999999998765322 11   1223344334444444 58866553

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=92.97  E-value=0.13  Score=51.26  Aligned_cols=89  Identities=15%  Similarity=0.050  Sum_probs=58.7

Q ss_pred             EEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-ccc-c--eEEE-cCCCC---
Q 014671          258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYV-D--EVII-GAPWE---  329 (420)
Q Consensus       258 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~V-D--~Vvi-~~~~~---  329 (420)
                      .|+.-|+||++|.||..+.++|.+..|.|++--.--.    .+.--.+.+-|+++++.+ +.. +  .|++ ..|..   
T Consensus       157 ~VvafqTrNPiHrgH~~l~~~ale~~d~vll~P~~g~----~K~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m~~  232 (349)
T 1v47_A          157 KVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILGA----KKPDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRY  232 (349)
T ss_dssp             SEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCSC----CCTTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCC
T ss_pred             eEEEeecCCCCchHHHHHHHHHHHhCCcEEEEECCCC----CCCCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHhhc
Confidence            3555899999999999999999999997776444322    223568999999888765 322 3  2443 12221   


Q ss_pred             --chHH----HH-hhcCccEEEEcCCcC
Q 014671          330 --VTKD----MI-TTFNICLVVHGTVSE  350 (420)
Q Consensus       330 --~~~~----~i-~~~~~d~vv~G~d~~  350 (420)
                        .+..    ++ +.+.+..++-|.|..
T Consensus       233 aGPreailhaiirkn~G~t~fIVGrDha  260 (349)
T 1v47_A          233 AGPKEAVFHALVRKNFGATHFLVGRDHA  260 (349)
T ss_dssp             CTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence              1111    12 335788999998864

>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*

Probab=92.76  E-value=0.075  Score=50.60  Aligned_cols=42  Identities=21%  Similarity=0.546  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCcc
Q 014671          253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQI  295 (420)
Q Consensus       253 ~~~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~  295 (420)
                      ..+++|.+++ |-=-+|.||+.++++|++.+|.+||.|.-++.
T Consensus        21 ~~g~~ig~VP-TMGaLH~GHlsLv~~Ar~~~d~vVVSIFVNP~   62 (264)
T 3n8h_A           21 IKQQKIGFVP-TMGALHNGHISLIKKAKSENDVVIVSIFVNPT   62 (264)
T ss_dssp             CTTSCEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGG
T ss_pred             hCCCcEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcc
Confidence            3456777665 22268999999999999999999999998864

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=92.57  E-value=0.12  Score=52.19  Aligned_cols=90  Identities=12%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-ccc-c--eEEE---cCC
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYV-D--EVII---GAP  327 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~V-D--~Vvi---~~~  327 (420)
                      +.|+..|+||++|.||..+.++|.+..  |.|++--....    .+.--.+.+.|+++++.+ +.. +  .|++   ..+
T Consensus       193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~  268 (396)
T 1jhd_A          193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD  268 (396)
T ss_dssp             SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred             ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CCCCCCCHHHHHHHHHHHHHhcCCCcceEEEechHH
Confidence            345669999999999999999999876  76654333222    223468889999888765 321 2  2322   222


Q ss_pred             C---CchHH----HH-hhcCccEEEEcCCcC
Q 014671          328 W---EVTKD----MI-TTFNICLVVHGTVSE  350 (420)
Q Consensus       328 ~---~~~~~----~i-~~~~~d~vv~G~d~~  350 (420)
                      .   +.+..    ++ +.+++.+++-|.|..
T Consensus       269 m~~aGPreailhaiirkn~G~t~fIVGrDha  299 (396)
T 1jhd_A          269 MLYAGPREAVLHAYFRQNMGATHFIIGRDHA  299 (396)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence            1   11222    12 335788999999864

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=91.92  E-value=0.61  Score=49.22  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHh-CCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc---cccEEEe-CCCcc-
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA-  139 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~l-gd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~---~VD~vi~-~~p~~-  139 (420)
                      ++|++.=+++++|.||..++++|... ++.|+|-+..-    ..| +-=++.+-|++-++.+.   --+.++. ..|.. 
T Consensus       191 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~g----~~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m  265 (573)
T 1m8p_A          191 SRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVG----LTK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAM  265 (573)
T ss_dssp             CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCC----CCC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCC
T ss_pred             CeEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchh
Confidence            35788899999999999999988865 77655432211    112 23467888988877631   1122332 12222 


Q ss_pred             -cc---HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          140 -IT---EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       140 -~~---~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                       +.   +..+..++ +.++|..+++|.|..
T Consensus       266 ~~agprea~~ha~ir~n~G~th~ivgrdha  295 (573)
T 1m8p_A          266 RMGGPREAIWHAIIRKNHGATHFIVGRDHA  295 (573)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCSEEEECTTTT
T ss_pred             hccCchHHHHHHHHHHHCCCCeEEECCCCC
Confidence             11   22334433 568999999998863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=91.36  E-value=0.8  Score=48.01  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHH-hCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc----ccccEEEe-CCCcc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL----KWVDEVIA-NAPYA  139 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~-lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~----~~VD~vi~-~~p~~  139 (420)
                      ++|++.=++.++|.||..++++|.. .++.|+|-+.--    ..| +-=++.+-|++-++.+    ---+.++. ..|..
T Consensus       164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~g----~~k-~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~  238 (546)
T 2gks_A          164 DKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVVG----LTK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLA  238 (546)
T ss_dssp             SCEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBCS----BCC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCB
T ss_pred             CcEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCcC----CCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCch
Confidence            4688899999999999999999986 688666533221    122 3356889999888764    11122222 22221


Q ss_pred             c--c---HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          140 I--T---EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       140 ~--~---~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      .  .   +.-+..++ +.++|..+++|.|..
T Consensus       239 m~~agprea~~ha~ir~n~G~th~ivgrdha  269 (546)
T 2gks_A          239 MRMAGPREALWHGIIRRNYGATHFIVGRDHA  269 (546)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             hhccCchHHHHHHHHHHhCCCCeEEECCCCC
Confidence            1  1   23344444 569999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.11  E-value=4.7  Score=43.01  Aligned_cols=95  Identities=16%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHH-hCC------eEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc-----cccEE
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKA-LGD------ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-----WVDEV  132 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~-lgd------~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~-----~VD~v  132 (420)
                      -++|++.=+-+++|.||..|++.|.+ .+|      .|.+-+.    +-..| +-=++.+-|++-.+.+-     --+.+
T Consensus       412 w~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl----~G~tk-~~di~~~~r~~~~~~~~~~~y~p~~~~  486 (630)
T 1x6v_B          412 ADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPL----GGWTK-DDDVPLMWRMKQHAAVLEEGVLNPETT  486 (630)
T ss_dssp             CSEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEB----CSCCC-TTSCCHHHHHHHHHHHHHTTSSCGGGE
T ss_pred             CCeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeC----cCCCC-CCCCCHHHHHHHHHHHHHcCCCCCcce
Confidence            34788888999999999999999986 444      2333222    11112 34668888888776531     11334


Q ss_pred             Ee-CCCcccc-----HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          133 IA-NAPYAIT-----EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       133 i~-~~p~~~~-----~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      +. ..|+.+-     +.-+..++ +.++|.++++|.|..
T Consensus       487 ~l~~~p~~mryaGPrEa~~hai~rkN~Gcth~IVGrdhA  525 (630)
T 1x6v_B          487 VVAIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  525 (630)
T ss_dssp             EECCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             EEeeccchhhhcCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence            43 2232211     34455555 459999999999975

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=86.93  E-value=4.6  Score=42.33  Aligned_cols=94  Identities=7%  Similarity=0.019  Sum_probs=55.2

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHH-HhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc---cccEEEe-CCCccc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAK-ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYAI  140 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~-~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~---~VD~vi~-~~p~~~  140 (420)
                      ++|++.=+-+++|.||..++++|. +.+|.|++  |+  .+-..| +-=++.+-|++-.+.+.   --+.++. ..|+..
T Consensus       164 ~~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll--~p--l~g~~k-~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m  238 (552)
T 3cr8_A          164 RRIIAWQARQPMHRAQYEFCLKSAIENEANLLL--HP--QVGGDI-TEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPP  238 (552)
T ss_dssp             CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE--CC--BCCCCT-TTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCC
T ss_pred             CceEEEecCCCCchHHHHHHHHHHHhcCCeEEE--Ee--ccCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEeecchhh
Confidence            357888999999999999999988 66775443  22  121112 34667888888776531   1222331 233322


Q ss_pred             -----cHHHHHHHH-hhcCccEEEEcCCCC
Q 014671          141 -----TEQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       141 -----~~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                           .+.-+..++ +.++|..+++|.|..
T Consensus       239 ~~agprea~~ha~~r~n~G~th~ivGrdha  268 (552)
T 3cr8_A          239 PEASGRALLLRAIVARNFGCSLLIAGGEHQ  268 (552)
T ss_dssp             CCSCSHHHHHHHHHHHHHTCSEEEC-----
T ss_pred             cccCcHHHHHHHHHHHhCCCCeeeeCCCCC
Confidence                 134455555 459999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	7e-21
d1coza_	126	c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr	2e-15
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	1e-12
d1lw7a1	163	c.26.1.3 (A:57-219) Transcriptional regulator NadR	4e-06
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	4e-04
d1f9aa_	164	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	6e-04
d1ej2a_	167	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	4e-04
d1vlha_	157	c.26.1.3 (A:) Phosphopantetheine adenylyltransfera	0.003
d1kama_	189	c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad	0.003

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.7 bits (211), Expect = 7e-21
 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           +V   G FDL+H+GH   L +AK LGD LVV + +DE  +  +     S E R  ++  +
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
           ++VDEVI    +   +Q +     +H ID  + G       D    +   K       + 
Sbjct: 63  RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMG------DDWEGKFDFLKDQCEVVYLP 112

Query: 187 RTEGVSSTDIVGRI 200
           RTEG+S+T I   I
Sbjct: 113 RTEGISTTKIKEEI 126

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 10/134 (7%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTD-QIVRGSYHPIMHLHERSLSVLA 315
           + V   G FDL H GH+++L++A+QLGD+L+V I TD   ++           R L +  
Sbjct: 2   KKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILET 61

Query: 316 CRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLE 375
            RYVDEVI    WE  K  I   NI + V G   E           ++  K       L 
Sbjct: 62  IRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGDDWE---------GKFDFLKDQCEVVYLP 112

Query: 376 SPKSITTTSVAQRI 389
             + I+TT + + I
Sbjct: 113 RTEGISTTKIKEEI 126

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 18/151 (11%)

Query: 63  KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGP-----PVLSME 117
           +K+V V   G F  +H GH N + +A +  DEL V V SD               + +++
Sbjct: 1   EKKVGVIF-GKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQ 59

Query: 118 ERLALVSGLKWVDEVI--------ANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG 169
           +RL  +  +    +             P             +                + 
Sbjct: 60  DRLRWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEP 119

Query: 170 TDAYALAKKVGRYKQI----KRTEGVSSTDI 196
            D     K +G    +    +    VS+T I
Sbjct: 120 QDKAPYEKYLGLEVSLVDPDRTFFNVSATKI 150

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVR------GSYHPIMHLHERS 310
           +V  I G F   H GH+ ++ +A    D L V + +D +             +  + +R 
Sbjct: 3   KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62

Query: 311 LSVLACRYVDEVII 324
             +       +  I
Sbjct: 63  RWMQQIFKYQKNQI 76

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC 316
           R   I G F  FH GH+E++KK  +  D +++GI + Q      +P           +  
Sbjct: 2   RGFII-GRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERIL---MIT 57

Query: 317 RYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI--FQLL 374
           + + +  +       KD+         V       +   +G      + +  G    +  
Sbjct: 58  QSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPE 117

Query: 375 ESPKSITTTSVAQRIIANHE 394
              +   + +  +R + N E
Sbjct: 118 MFNRKEYSGTEIRRRMLNGE 137

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 67  RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
           R ++ G F   H GH   +++     DE+++G+ S ++   +      +  ER      +
Sbjct: 2   RGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGER------I 53

Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK--KVGRYKQ 184
             + + + +         +  +         +    P      +    +    +   Y+ 
Sbjct: 54  LMITQSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEV 113

Query: 185 I----KRTEGVSSTDIVGRILS 202
                   +  S T+I  R+L+
Sbjct: 114 KRPEMFNRKEYSGTEIRRRMLN 135

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 4/139 (2%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC 316
           R + + G    FH GH++++K   +  D L++ I + Q+      P        +   A 
Sbjct: 2   RGLLV-GRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKAL 60

Query: 317 RYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGI---FQL 373
                          +D+         +       +   +G      +    G       
Sbjct: 61  SENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPP 120

Query: 374 LESPKSITTTSVAQRIIAN 392
           L      + T V +R++ +
Sbjct: 121 LFYRDRYSGTEVRRRMLDD 139

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 2/137 (1%)

Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC 316
           + VY  G+FD    GHV+I+K+A  + D  LV + T+   +     +    +    VL+ 
Sbjct: 2   KAVYP-GSFDPITLGHVDIIKRALSIFD-ELVVLVTENPRKKCMFTLEERKKLIEEVLSD 59

Query: 317 RYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLES 376
               +V +     V         + +     V++    L       ++   +    L+ S
Sbjct: 60  LDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIAS 119

Query: 377 PKSITTTSVAQRIIANH 393
            K    +S   + +A +
Sbjct: 120 EKFSFISSSLVKEVALY 136

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 189

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/91 (10%), Positives = 24/91 (26%)

Query: 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL 314
           + ++    G FD  H GH+ +  +         +    +QI     +         + +L
Sbjct: 1   SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEML 60

Query: 315 ACRYVDEVIIGAPWEVTKDMITTFNICLVVH 345
                            +    ++    V  
Sbjct: 61  KLAIQSNPSFKLELVEMEREGPSYTFDTVSL 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.97
d1coza_	126	CTP:glycerol-3-phosphate cytidylyltransferase {Bac	99.96
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	99.82
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.43
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.37
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.33
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	99.2
d1f9aa_	164	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.2
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.19
d1lw7a1	163	Transcriptional regulator NadR, NMN-adenylyltransf	99.19
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	99.19
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	99.15
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	99.09
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.08
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.08
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	99.07
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	99.06
d1ej2a_	167	Nicotinamide mononucleotide (NMN) adenylyltransfer	99.04
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.97
d1qjca_	157	Phosphopantetheine adenylyltransferase {Escherichi	98.93
d1o6ba_	163	Phosphopantetheine adenylyltransferase {Bacillus s	98.89
d1od6a_	160	Phosphopantetheine adenylyltransferase {Thermus th	98.84
d1tfua_	157	Phosphopantetheine adenylyltransferase {Mycobacter	98.82
d1vlha_	157	Phosphopantetheine adenylyltransferase {Thermotoga	98.76
d1mrza2	157	FMN adenylyltransferase domain of bifunctional FAD	98.6
d1kama_	189	Nicotinamide mononucleotide (NMN) adenylyltransfer	98.46
d1nuua_	233	Cytosolic NMN/NAMN adenylyltransferase {Human (Hom	98.4
d1kr2a_	271	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.78
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	97.77
d1jhda2	223	ATP sulfurylase catalytic domain {Sulfur-oxidizing	97.55
d1v47a2	214	ATP sulfurylase catalytic domain {Thermus thermoph	96.38
d1g8fa2	221	ATP sulfurylase catalytic domain {Baker's yeast (S	95.92
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	95.78
d1x6va2	235	ATP sulfurylase catalytic domain {Human (Homo sapi	95.7
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	95.33
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	94.22
d1v8fa_	276	Pantothenate synthetase (Pantoate-beta-alanine lig	92.8
d1ihoa_	282	Pantothenate synthetase (Pantoate-beta-alanine lig	91.86
d2a84a1	286	Pantothenate synthetase (Pantoate-beta-alanine lig	88.84

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1.4e-31  Score=229.73  Aligned_cols=125  Identities=34%  Similarity=0.507  Sum_probs=114.6

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CCCCCCCHHHHHHhhhhccccceEEEcCCCCchHHH
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM  334 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~~~~~~~~  334 (420)
                      +|+|++.|+||+||.||+++|++|+++||+|||||++|+.+.+ +++|++|++||++++++|++||+|++..++..+.++
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~~~   80 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQD   80 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccHhh
Confidence            5789999999999999999999999999999999999998877 556999999999999999999999999999888899


Q ss_pred             HhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEeCCCCCCCHHHHHHHH
Q 014671          335 ITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRI  389 (420)
Q Consensus       335 i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~~~~~~~Stt~Ii~RI  389 (420)
                      +.+++||++++|.||...         +...+.+|+++.+++++++|||.|++||
T Consensus        81 i~~~~~d~~v~G~D~~~~---------~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          81 IIDHNIDVFVMGDDWEGK---------FDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             HHHTTCSEEEEEGGGTTT---------TGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             hhccCCCEeeeccccccc---------hHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            999999999999998653         2335678999999999999999999986

>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=1e-29  Score=218.02  Aligned_cols=126  Identities=34%  Similarity=0.495  Sum_probs=111.3

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccccccEEEeCCCccccHHH
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF  144 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~~VD~vi~~~p~~~~~~f  144 (420)
                      |++|++.|+||++|.||+++|++|+++||.|+||+++|+.+..+|++|++|++||+++|++|+|||+|++..|+....++
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~~~   80 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKKQD   80 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHHHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhhCceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccHhh
Confidence            57899999999999999999999999999999999999988777889999999999999999999999997776544444


Q ss_pred             HHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCCeEEEeccCCCCChHHHHHHH
Q 014671          145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRI  200 (420)
Q Consensus       145 l~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r~~~ISST~Ir~rI  200 (420)
                      +    .+++||++++|+||..      .+..++..++++.+++++++|||.||+||
T Consensus        81 i----~~~~~d~~v~G~D~~~------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          81 I----IDHNIDVFVMGDDWEG------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             H----HHTTCSEEEEEGGGTT------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             h----hccCCCEeeecccccc------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            3    5689999999999842      23456778999999999999999999975

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.6e-20  Score=164.03  Aligned_cols=133  Identities=23%  Similarity=0.297  Sum_probs=102.3

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhC-----CeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhccccccEEEeCCC-ccc
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAP-YAI  140 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lg-----d~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~~~~VD~vi~~~p-~~~  140 (420)
                      |+++|+|||+|+||+.+|++|++.+     ..+++.+.+++.....+. +++++.++|.++++.+ ++|.++.-.. ..+
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~-g~~~~l~f~~~~~l   79 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRY-ARTVVLDFFRIKDL   79 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTT-SCEEEECHHHHTTC
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhcc-cceeeehhhhHhhh
Confidence            6899999999999999999998875     456777766665443332 5699999999999997 5777664100 012


Q ss_pred             c-HHHHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEecc----CCCCChHHHHHHHHhc
Q 014671          141 T-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS  203 (420)
Q Consensus       141 ~-~~fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r----~~~ISST~Ir~rI~~~  203 (420)
                      + ++|+++++.  +++.||+|+||+||.++.++.+.|++.| ++..++.    .+.||||.||+.|.++
T Consensus        80 s~~~Fi~~~l~--~~~~ivvG~Df~FG~~r~G~~~~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          80 TPEGFVERYLS--GVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             CHHHHHHHHCT--TCCEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhHHHHHHhh--cCcEEEEecCcccccccccchhhhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence            2 488888763  7899999999999999999999999987 4444443    2349999999999865

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=9.1e-13  Score=114.23  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccc---cEEEeCCCccccHH
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV---DEVIANAPYAITEQ  143 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~V---D~vi~~~p~~~~~~  143 (420)
                      ++++|+|||+|.||+.++++|++.+|.++|++.++...  .+..+.++.++|.+|++.. ...   ........+.....
T Consensus         3 gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~--~~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T d1f9aa_           3 GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKS--HTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNSI   80 (164)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC--SSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGGG
T ss_pred             EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCccc--cCcCCCCCHHHHHHHHHHHhhhcCcceeeccccccchHHH
Confidence            89999999999999999999999999999999776422  2225678999999999752 111   12222222333333


Q ss_pred             HHHHHHhhcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEecc--CCCCChHHHHHHHHhc
Q 014671          144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (420)
Q Consensus       144 fl~~ll~~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r--~~~ISST~Ir~rI~~~  203 (420)
                      +... ++.+.+++.+...+      ........++.+ .+..++.  ..+||||+||++|.++
T Consensus        81 ~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  136 (164)
T d1f9aa_          81 WVSY-VESLTPPFDIVYSG------NPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNG  136 (164)
T ss_dssp             HHHH-HHHHSCCCSEEECC------CHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHT
T ss_pred             HHHH-HHhhcCceEEEEcC------hHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcC
Confidence            3322 23333332222111      112233444444 3333332  3479999999999865

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=4.5e-13  Score=114.81  Aligned_cols=64  Identities=27%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhh-----hcCCCCCCcHHHHHHHHhcccc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-----ANKGPPVLSMEERLALVSGLKW  128 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~-----~~K~~pi~t~eER~~ll~~~~~  128 (420)
                      +++++++|+|||+|.||+.++++|++.+|.++|++.+++...     .....++.+.++|.++++.+..
T Consensus         2 kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~   70 (163)
T d1lw7a1           2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK   70 (163)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS
T ss_pred             CeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccccCCCCHHHHHHHHHHhCc
Confidence            468999999999999999999999999999999999887532     1223678899999999976533

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.33  E-value=6.6e-12  Score=109.27  Aligned_cols=126  Identities=15%  Similarity=0.175  Sum_probs=76.7

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc------cccccEEEeCCC-ccc
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG------LKWVDEVIANAP-YAI  140 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~------~~~VD~vi~~~p-~~~  140 (420)
                      ++++|+|||+|.||+.++++|.+.+|.++|+|.+....  .+..+.++.+||++|++.      ...+.......+ ...
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~~   80 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLS--HSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIEC   80 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCC--SSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCSC
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCC--CCccccccHHHHHHHHHHHHHHcCCCceeEEeccchhhhh
Confidence            89999999999999999999999999999999875422  222578899999999984      112222222222 222


Q ss_pred             cHHHHHHHHh-hcCccEEEEcCCCCCCCCCccHHHHHHhCC-eEEEecc--CCCCChHHHHHHHHhc
Q 014671          141 TEQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR--TEGVSSTDIVGRILSS  203 (420)
Q Consensus       141 ~~~fl~~ll~-~~~~d~vV~G~D~~~g~~g~~~~~~lk~~g-~~~~v~r--~~~ISST~Ir~rI~~~  203 (420)
                      ...+...... ..+.+.++.++        .......++.+ .+..++.  ...||||+||++|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g  139 (167)
T d1ej2a_          81 NALWVGHIKMLTPPFDRVYSGN--------PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDD  139 (167)
T ss_dssp             HHHHHHHHHHHSCCCSEEECCC--------HHHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHT
T ss_pred             HHHHHHHHheeeeceeEEEcch--------HHHHHHHHcCCCeEEeccccccccccHHHHHHHHHcC
Confidence            2222221111 12334433221        11223444444 3344433  3469999999999864

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=6.3e-12  Score=107.53  Aligned_cols=39  Identities=28%  Similarity=0.434  Sum_probs=35.9

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecch
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDE  103 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~  103 (420)
                      |++++++|+|||+|+||++++++|.+.+|.++|.+.+.+
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            568999999999999999999999999999998888765

>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=4.5e-11  Score=103.22  Aligned_cols=127  Identities=19%  Similarity=0.198  Sum_probs=81.9

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEE---cCC---C
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVII---GAP---W  328 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi---~~~---~  328 (420)
                      +| .++.|+||++|.||+.++++|++.+|.++|++.++.... .+.+.++.+||.++++.. ...+...+   ...   +
T Consensus         1 mk-gl~~G~FdP~H~GH~~li~~a~~~~d~v~v~i~~~~~~~-~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~~~~~~   78 (164)
T d1f9aa_           1 LR-GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSH-TLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFN   78 (164)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCS-SSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCG
T ss_pred             CE-EEEecccCCCCHHHHHHHHHHHHhCCCeEEEecCCcccc-CcCCCCCHHHHHHHHHHHhhhcCcceeeccccccchH
Confidence            35 788999999999999999999999999999998765332 344778999999888653 33332222   111   2


Q ss_pred             CchHHHHhhcCccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEe-C--CCCCCCHHHHHHHHHhch
Q 014671          329 EVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLL-E--SPKSITTTSVAQRIIANH  393 (420)
Q Consensus       329 ~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~-~--~~~~~Stt~Ii~RI~~~~  393 (420)
                      ..+.+.++.+.+++.+....         ...........|..+.. +  ...++|+|.|.++|.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  137 (164)
T d1f9aa_          79 SIWVSYVESLTPPFDIVYSG---------NPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLNGE  137 (164)
T ss_dssp             GGHHHHHHHHSCCCSEEECC---------CHHHHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhcCceEEEEcC---------hHHHHHHHHhcCCeEEEecCcCCCCcCHHHHHHHHHcCC
Confidence            23445566655543332211         11122334555543333 2  336799999999998753

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.1e-11  Score=113.57  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=56.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--------CeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEe-
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--------DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--------d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~-  134 (420)
                      +.+++++|+|||+|.||+.+++.|++..        +.+++.++.++    .+.+++.+.++|++|++- ++..+.+.+ 
T Consensus         4 ~~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~----~~k~~~~s~~~Rl~Ml~la~~~~~~~~vs   79 (271)
T d1kr2a_           4 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA----YKKKGLIPAYHRVIMAELATKNSKWVEVD   79 (271)
T ss_dssp             EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG----GCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             cEEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC----CcCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            3456889999999999999999988642        44566665544    233578899999999974 444444443 


Q ss_pred             -----CCCccccHHHHHHHHhhc
Q 014671          135 -----NAPYAITEQFMNRLFNEH  152 (420)
Q Consensus       135 -----~~p~~~~~~fl~~ll~~~  152 (420)
                           ...+++|.+++..+-+++
T Consensus        80 ~~E~~~~~~syTidTl~~l~~~~  102 (271)
T d1kr2a_          80 TWESLQKEWKETLKVLRHHQEKL  102 (271)
T ss_dssp             CHHHHCSSCCCHHHHHHHHHHHH
T ss_pred             ehhhhcCCCccHHHHHHHHHHHh
Confidence                 223345666666655444

>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=7e-12  Score=107.21  Aligned_cols=64  Identities=20%  Similarity=0.179  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC------CCCCCCCHHHHHHhhhhccc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG------SYHPIMHLHERSLSVLACRY  318 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~------~~~pi~~~~ER~~~v~~~~~  318 (420)
                      +++|+++.|+||++|.||+.++++|++.+|.|+|++.++.....      +..++.+.++|..+++.+..
T Consensus         1 ~kkigl~~G~FdP~H~GH~~l~~~a~~~~d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~   70 (163)
T d1lw7a1           1 EKKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFK   70 (163)
T ss_dssp             CCCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTS
T ss_pred             CCeEEEEeeeCCCCCHHHHHHHHHHHHhCCccEEEEECCCCccccccccccccCCCCHHHHHHHHHHhCc
Confidence            36899999999999999999999999999999999999975432      34489999999999877643

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.3e-12  Score=107.64  Aligned_cols=54  Identities=26%  Similarity=0.525  Sum_probs=42.5

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHh
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~  124 (420)
                      ++++++|+|||+|.||+.++++|.+.+|+++|++.+.+     ..++..+..+|..++.
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~-----~~k~~~~~~~~~~~~~   54 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP-----SKKPMFTLEERVALAQ   54 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC-----SSCCSSCHHHHHHHHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc-----ccccccCHHHHHHHHH
Confidence            47899999999999999999999999999999998765     1234445555555543

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=2.7e-11  Score=103.59  Aligned_cols=54  Identities=31%  Similarity=0.567  Sum_probs=40.4

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHh
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~  124 (420)
                      ++++|+|||+|.||++++++|.+.+|+|++++..++.   .+.....+..+|+.+..
T Consensus         3 ~ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~---kk~~~~~~~~~~~~~~~   56 (160)
T d1od6a_           3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPS---KRGQYLFSAEERLAIIR   56 (160)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC--------CCSSCHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCC---ccccccCCHHHHHHHHH
Confidence            5899999999999999999999999999999988763   22234445555555443

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=2.4e-11  Score=104.72  Aligned_cols=55  Identities=25%  Similarity=0.484  Sum_probs=48.0

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG  125 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~  125 (420)
                      ++++++|+|||+|.||+.++++|.+.+|+++|.+...+     +.++..+.++|.+|+..
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~-----~~~~~~~~~~r~~~~~~   56 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS-----SKKPLFSVEERCELLRE   56 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC-----SSCCSSCHHHHHHHHHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc-----cccccCCHHHHHHHHhh
Confidence            47899999999999999999999999999998887653     23688999999999874

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=8.1e-11  Score=104.07  Aligned_cols=58  Identities=19%  Similarity=0.332  Sum_probs=43.4

Q ss_pred             CceEEEEecccCcCCHHHHHHHHHHHHhC--CeEEEEEecchhhhhcCCCCCCcHHHHHHHHh
Q 014671           64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVS  124 (420)
Q Consensus        64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~  124 (420)
                      ++.+++++|+|||+|.||+.++++|++..  |++++.+..++.   .|........+|.+++.
T Consensus         2 ~~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~~~~~~   61 (213)
T d1k4ma_           2 KSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLE   61 (213)
T ss_dssp             CCCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHH
T ss_pred             CccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCc---hhcccccchHHHHHHHH
Confidence            46689999999999999999999999974  789998888763   33333444445555443

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.08  E-value=4.3e-10  Score=97.38  Aligned_cols=137  Identities=15%  Similarity=0.004  Sum_probs=72.1

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhCCe--EEEEEecchhhhhcCCCCCCcHHHHHHHHhcc-ccccEEEeC------
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALGDE--LVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIAN------  135 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lgd~--LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~-~~VD~vi~~------  135 (420)
                      +++++++|+|||+|.||+.++++|.+.++.  +++.+.+...  ..+..+.....+|+.+.... .....+...      
T Consensus         2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   79 (189)
T d1kama_           2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP--HKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMER   79 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-----------CHHHHHHHHHHHHTTCTTEEECCGGGST
T ss_pred             CEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCCc--ccccchhhHHHHHHHHHHhhhccCcceeechhhhcc
Confidence            457899999999999999999999999854  4444433221  11113455556666555431 111111111      


Q ss_pred             CCccccHHHHHHHHhhc--CccEEEEcCCCCCCCCCccHHHHHHhCCeEEEecc-----------------CCCCChHHH
Q 014671          136 APYAITEQFMNRLFNEH--KIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR-----------------TEGVSSTDI  196 (420)
Q Consensus       136 ~p~~~~~~fl~~ll~~~--~~d~vV~G~D~~~g~~g~~~~~~lk~~g~~~~v~r-----------------~~~ISST~I  196 (420)
                      ....++.+.+..+...+  .....+.|.|..........++...........++                 ...||||.|
T Consensus        80 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~I  159 (189)
T d1kama_          80 EGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMI  159 (189)
T ss_dssp             TCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHHHH
T ss_pred             CCcceehhhhhHHhhcCCcchhhhhhhcccccccccchhhhhhhhhcceeeccccccccccchhhhccccccCcCChHHH
Confidence            11122334444333333  23367778876544444444443333322222222                 125999999


Q ss_pred             HHHHHhc
Q 014671          197 VGRILSS  203 (420)
Q Consensus       197 r~rI~~~  203 (420)
                      |+++..+
T Consensus       160 R~~i~~~  166 (189)
T d1kama_         160 RERFKSK  166 (189)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            9999865

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=99.07  E-value=7.4e-11  Score=108.31  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             CCceEEEEecccCcCCHHHHHHHHHHHHh--CCeEEEEEecchhhhhcCC-CCCCcHHHHHHHHhc-ccccc-----EEE
Q 014671           63 KKRVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVD-----EVI  133 (420)
Q Consensus        63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~l--gd~LiVgV~sd~~i~~~K~-~pi~t~eER~~ll~~-~~~VD-----~vi  133 (420)
                      .+-++|+..|+||++|.||+.+++.|.+.  .|.+++.+...+   ..|. .+..+...|++|+.. +..-+     ..-
T Consensus        17 ~~~~~v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~---p~K~~~~~~~~~~r~~m~~~a~~~~~~~~is~~E   93 (223)
T d1jhda2          17 HGWSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK---LKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYG   93 (223)
T ss_dssp             HTCSSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC---CCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCEEEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCC---CCcCCCccccHHHHHHHHHHhhcCCCceeecccc
Confidence            34556788899999999999999999987  378888887766   3444 456788899988873 22222     221


Q ss_pred             eCCC-ccccHHHHHHHHhh-cCccEEEEcCCCCC
Q 014671          134 ANAP-YAITEQFMNRLFNE-HKIDYIIHGDDPCL  165 (420)
Q Consensus       134 ~~~p-~~~~~~fl~~ll~~-~~~d~vV~G~D~~~  165 (420)
                      ...+ .+++.+.+..+.++ .+..++++|.|-..
T Consensus        94 ~~~~~~syt~~tl~~l~~~~~~~~~~iiG~D~~~  127 (223)
T d1jhda2          94 FDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAG  127 (223)
T ss_dssp             CCCCCCTHHHHHHHHHHHHHTTCSEEEECTTTTC
T ss_pred             ccccCCCcHHHHHHHHHHhCCcceEEEEeecccc
Confidence            1121 23456777666544 35667888877543

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=99.06  E-value=2.7e-10  Score=104.84  Aligned_cols=137  Identities=14%  Similarity=0.054  Sum_probs=81.1

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhC--Ce---EEEEEecchhhhhcCCCCCCcHHHHHHHHhc-cccccEEEe-----
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALG--DE---LVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIA-----  134 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lg--d~---LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~-~~~VD~vi~-----  134 (420)
                      ...+++|+|||+|.||+.++++|++..  +.   ++.++.+.. -...+.++..+.++|++|++. +...+.+.+     
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~R~~M~~la~~~~~~~~v~~~e~   83 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPV-NDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWES   83 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEEC-CTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHH
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccC-CCCcccCccCCHHHHHHHHHHHHhccCCEEEehHHH
Confidence            456789999999999999999998864  22   211221111 011233688999999999863 223333332     


Q ss_pred             -CCCccccHHHHHHHHhhcC--------------------cc---EEEEcCCC----CCCCCCc-cHHHHHHhCCeEEEe
Q 014671          135 -NAPYAITEQFMNRLFNEHK--------------------ID---YIIHGDDP----CLLPDGT-DAYALAKKVGRYKQI  185 (420)
Q Consensus       135 -~~p~~~~~~fl~~ll~~~~--------------------~d---~vV~G~D~----~~g~~g~-~~~~~lk~~g~~~~v  185 (420)
                       ...+++|.+.+..+.+++.                    ++   ++++|.|.    ..+.... ..++.+-+...+.++
T Consensus        84 ~~~~~s~ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~wk~~~~~~~~~il~~~~~iv~  163 (233)
T d1nuua_          84 EQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCV  163 (233)
T ss_dssp             HSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEE
T ss_pred             hCCCCccHHHHHHHHHHHhcccccccccccccchhccccCCCccEEEEEccchhhhcchhhhhcchhHHHHHhhCcEEEE
Confidence             2223455566665555442                    23   57899882    1221121 123344444556666


Q ss_pred             ccC-----------------------------CCCChHHHHHHHHhc
Q 014671          186 KRT-----------------------------EGVSSTDIVGRILSS  203 (420)
Q Consensus       186 ~r~-----------------------------~~ISST~Ir~rI~~~  203 (420)
                      +|.                             ..||||+||+++..+
T Consensus       164 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g  210 (233)
T d1nuua_         164 GRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQG  210 (233)
T ss_dssp             CCTTCCHHHHHHHCHHHHHTGGGEEEECCSCCCCCCHHHHHHHHHTT
T ss_pred             eCCCCchhhhhhhHHHHhhccCCEEEecCCccccCCHHHHHHHHHcC
Confidence            552                             148999999999865

>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.04  E-value=2.5e-10  Score=98.96  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-c-----ccceEEEcCCCCch-
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-R-----YVDEVIIGAPWEVT-  331 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~-----~VD~Vvi~~~~~~~-  331 (420)
                      .++.|+|||+|.||+.++++|.+.+|.++|+|.++.... .+.+.++.+||+++++.. +     .+....+..+.... 
T Consensus         3 gi~~G~FdP~H~GH~~ii~~a~~~~d~v~v~i~~~~~~~-~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~~~   81 (167)
T d1ej2a_           3 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSH-SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDIECN   81 (167)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCS-SSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCSCH
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHCCceEEEEecCCCCC-CccccccHHHHHHHHHHHHHHcCCCceeEEeccchhhhhH
Confidence            788999999999999999999999999999998764322 345788999999888652 2     23333333332211 


Q ss_pred             ---HHHHhhcC--ccEEEEcCCcCCCCCCCCCCChHHHHHhCCeEEEe-C--CCCCCCHHHHHHHHHhch
Q 014671          332 ---KDMITTFN--ICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLL-E--SPKSITTTSVAQRIIANH  393 (420)
Q Consensus       332 ---~~~i~~~~--~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~~~~~-~--~~~~~Stt~Ii~RI~~~~  393 (420)
                         ...++.+.  .+++..+.           .......+..|..+.. +  ....+|+|.|.++|.++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  140 (167)
T d1ej2a_          82 ALWVGHIKMLTPPFDRVYSGN-----------PLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLDDG  140 (167)
T ss_dssp             HHHHHHHHHHSCCCSEEECCC-----------HHHHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHHTC
T ss_pred             HHHHHHHheeeeceeEEEcch-----------HHHHHHHHcCCCeEEeccccccccccHHHHHHHHHcCC
Confidence               12223322  23322111           1112334555643333 3  234699999999998653

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=1.4e-09  Score=92.57  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=33.8

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecch
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDE  103 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~  103 (420)
                      ++++|+|||+|+||+.++++|.+.+|+++|++...+
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~   38 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP   38 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCcccccccccc
Confidence            899999999999999999999999999999988765

>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.2e-09  Score=92.69  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=75.7

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHH-hhhhccccceEEEcCCCCchHHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSL-SVLACRYVDEVIIGAPWEVTKDMI  335 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~-~v~~~~~VD~Vvi~~~~~~~~~~i  335 (420)
                      |+++..|+|||+|.||+.++++|.+.+|+|+|.++.+.    ..++..+..+|.. +.+......++.+...........
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~D~v~v~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASP----SKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFA   76 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCC----SSCCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHHH
T ss_pred             CEEEEeeccCCCCHHHHHHHHHHHHhCCEeeecccCcc----ccccccCHHHHHHHHHHHHHHhhccccccccccccchh
Confidence            57888999999999999999999999999999999875    3345666666653 344445556666644333333443


Q ss_pred             hhcCccEEEEcCCcCCCCCCCCCCChHHHHHhC-C-eEEEe-CC--CCCCCHHHHHHHHHhch
Q 014671          336 TTFNICLVVHGTVSETNTPLTGQSDPYEVAKSM-G-IFQLL-ES--PKSITTTSVAQRIIANH  393 (420)
Q Consensus       336 ~~~~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~-G-~~~~~-~~--~~~~Stt~Ii~RI~~~~  393 (420)
                      .....-........... ............... . ..+.+ .+  ..++|+|+|.++|..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ISST~IR~~i~~g~  138 (157)
T d1qjca_          77 RNQHATVLIRGLRAVAD-FEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQG  138 (157)
T ss_dssp             HHTTCCEEEEECCTTCC-HHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTTC
T ss_pred             hhhccceeeeeeccccc-hhhhhHHHHHHHHhCCCceEEEeecCCCCCccCHHHHHHHHHcCC
Confidence            33333222222110000 000000001111111 1 22333 22  24699999999987764

>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.89  E-value=2.1e-09  Score=92.22  Aligned_cols=133  Identities=13%  Similarity=0.165  Sum_probs=78.4

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhhhhc-cccceEEEcCCCCchHHHH
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKDMI  335 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~~~-~~VD~Vvi~~~~~~~~~~i  335 (420)
                      +|+++.|+|||+|.||+.++++|.+.+|.++|.+..+.    .++|.++.++|.+++... ...................
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNS----SKKPLFSVEERCELLREVTKDIPNITVETSQGLLIDYA   77 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCC----SSCCSSCHHHHHHHHHHHHTTCTTEEEEECSSCHHHHH
T ss_pred             eEEEeccccCCCCHHHHHHHHHHHHhCCEEEEcccccc----cccccCCHHHHHHHHhhhccccCcceeccccccccccc
Confidence            68999999999999999999999999999999988775    445899999999777554 3333333333333333344


Q ss_pred             hhcCccEEEEc-CCcCCCCCCCCCCChHHHHHhCCeEEEe---CCCCCCCHHHHHHHHHhch
Q 014671          336 TTFNICLVVHG-TVSETNTPLTGQSDPYEVAKSMGIFQLL---ESPKSITTTSVAQRIIANH  393 (420)
Q Consensus       336 ~~~~~d~vv~G-~d~~~~~~~~~~~d~~~~~k~~G~~~~~---~~~~~~Stt~Ii~RI~~~~  393 (420)
                      ........... ..+....+..............-....+   .....+|+|+|.++|..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~i~~g~  139 (163)
T d1o6ba_          78 RRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYDG  139 (163)
T ss_dssp             HHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTTC
T ss_pred             eecCcceeeeeecCcchhhhHHHHHHHHHHhCcccceEeccccchhhccCHHHHHHHHHcCC
Confidence            44444333322 1111100000000000001111122222   2235799999999987754

>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=3.4e-09  Score=90.11  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=40.8

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHHHhh
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERSLSV  313 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v  313 (420)
                      +|+ +..|+|||+|.||++++++|.+.+|.|++++..+..-  +.....+..+|+...
T Consensus         1 Mk~-ifgGsFdP~H~GHl~ii~~a~~~~D~v~i~~~~~~~k--k~~~~~~~~~~~~~~   55 (160)
T d1od6a_           1 MHV-VYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSK--RGQYLFSAEERLAII   55 (160)
T ss_dssp             CEE-EEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC-------CCSSCHHHHHHHH
T ss_pred             CeE-EeeeccCCcCHHHHHHHHHHHHhCCEEEEeccCCCCc--cccccCCHHHHHHHH
Confidence            355 7889999999999999999999999999999987521  222455666665333

>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=5.6e-09  Score=88.61  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=36.5

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCc
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ  294 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~  294 (420)
                      +++++++|+|||+|.||++++++|.+.+|.++|.+....
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~   39 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNP   39 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCS
T ss_pred             CCEeEeCcCCCCCCHHHHHHHHHHHHhcChHHhhccccC
Confidence            578999999999999999999999999999999998775

>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=7.9e-09  Score=87.64  Aligned_cols=48  Identities=31%  Similarity=0.446  Sum_probs=39.0

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccCCCCCCCCHHHHH
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHERS  310 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~~~~pi~~~~ER~  310 (420)
                      ++..|+|||+|.||+.++++|.+.+|.|+|++....    ......+..++.
T Consensus         3 aifgGsFdPiH~GHl~i~~~a~~~~D~v~v~~~~~~----~~~~~~~~~~~~   50 (157)
T d1vlha_           3 AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENP----RKKCMFTLEERK   50 (157)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCT----TCCCSSCHHHHH
T ss_pred             EEEeecCCCCcHHHHHHHHHHHHhcCcccccccccc----cccccCCHHHHH
Confidence            789999999999999999999999999999998765    222444445444

>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=1.1e-07  Score=82.65  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             EEEcCccccCCHHHHHHHHHHHhcC-----CEEEEEEecCccccC--CCCCCCCHHHHHHhhhhccccceEEEcCC--CC
Q 014671          259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVRG--SYHPIMHLHERSLSVLACRYVDEVIIGAP--WE  329 (420)
Q Consensus       259 V~~~G~FDl~H~GHi~~L~~Ak~~g-----d~LiVgV~~D~~v~~--~~~pi~~~~ER~~~v~~~~~VD~Vvi~~~--~~  329 (420)
                      |++-|.||-+|.||-.+|++|++.+     .-+++....++.+-.  .+.++++.++|..++..+. +|.++....  .-
T Consensus         1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~k~~~l~~~g-~~~~l~f~~~~~l   79 (157)
T d1mrza2           1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDFFRIKDL   79 (157)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECHHHHTTC
T ss_pred             CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEeccccccccHHHhhhhhhccc-ceeeehhhhHhhh
Confidence            4677999999999999999887642     446666655554333  3347999999999999886 565554311  11


Q ss_pred             chHHHHhhc--CccEEEEcCCcCCCCCCCCCCChHHHHHhCCe-EEEeC----CCCCCCHHHHHHHHHhc
Q 014671          330 VTKDMITTF--NICLVVHGTVSETNTPLTGQSDPYEVAKSMGI-FQLLE----SPKSITTTSVAQRIIAN  392 (420)
Q Consensus       330 ~~~~~i~~~--~~d~vv~G~d~~~~~~~~~~~d~~~~~k~~G~-~~~~~----~~~~~Stt~Ii~RI~~~  392 (420)
                      .+++|++++  ++..+|-|.|+....-  ..-+.. ..++.|. +..++    ....+|||.|.+-|.+.
T Consensus        80 s~~~Fi~~~l~~~~~ivvG~Df~FG~~--r~G~~~-~Lk~~g~~v~~i~~~~~~~~~ISST~IR~~l~~G  146 (157)
T d1mrza2          80 TPEGFVERYLSGVSAVVVGRDFRFGKN--ASGNAS-FLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG  146 (157)
T ss_dssp             CHHHHHHHHCTTCCEEEEETTCCBSGG--GCBCHH-HHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred             hhhHHHHHHhhcCcEEEEecCcccccc--cccchh-hhccceeEEEeeccEeeCCcEEcHHHHHHHHHcC
Confidence            356788776  7788999999876621  122333 3455664 44443    23459999998877654

>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=8.3e-07  Score=75.95  Aligned_cols=59  Identities=12%  Similarity=0.063  Sum_probs=37.8

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCC--EEEEEEecCccccCCCC-CCCCHHHHHHhhhh
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYTDQIVRGSYH-PIMHLHERSLSVLA  315 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd--~LiVgV~~D~~v~~~~~-pi~~~~ER~~~v~~  315 (420)
                      ++||++.+|+|||+|.||+.++++|.+.+|  .+++......  ..++. +.....+|..+...
T Consensus         1 ~kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   62 (189)
T d1kama_           1 SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP--PHKQNEDYTDSFHRVEMLKL   62 (189)
T ss_dssp             CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC-----------CHHHHHHHHHH
T ss_pred             CCEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccCC--cccccchhhHHHHHHHHHHh
Confidence            368999999999999999999999999985  4444443322  11222 55566666644433

>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]

Probab=98.40  E-value=4e-07  Score=83.06  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhcCC-----EEEEEEecCccccCCCCCCCCHHHHHHhh-hhccccceEEEc
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQLGD-----FLLVGIYTDQIVRGSYHPIMHLHERSLSV-LACRYVDEVIIG  325 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~gd-----~LiVgV~~D~~v~~~~~pi~~~~ER~~~v-~~~~~VD~Vvi~  325 (420)
                      .+++++|+|||+|.||+.+++.|++..+     .++.++.+-..-..++.+..+.++|+.|+ ++++..+.+.+.
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~R~~M~~la~~~~~~~~v~   79 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVD   79 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEEC
T ss_pred             EEEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccCCCCcccCccCCHHHHHHHHHHHHhccCCEEEe
Confidence            3577899999999999999999987531     12222222110011344899999999888 455666677774

>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.1e-05  Score=75.28  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             eEEEEcCccccCCHHHHHHHHHHHhc----C----CEEEEEEecCccccCCCCCCCCHHHHHHhh-hhccccceEEEc
Q 014671          257 RVVYIDGAFDLFHAGHVEILKKARQL----G----DFLLVGIYTDQIVRGSYHPIMHLHERSLSV-LACRYVDEVIIG  325 (420)
Q Consensus       257 ~iV~~~G~FDl~H~GHi~~L~~Ak~~----g----d~LiVgV~~D~~v~~~~~pi~~~~ER~~~v-~~~~~VD~Vvi~  325 (420)
                      .|++++|+|||+|.||+.+.+.|++.    +    |.+++.-+.+.   .++.++.+.++|+.|+ ++++..+.+.+.
T Consensus         5 ~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~---~~k~~~~s~~~Rl~Ml~la~~~~~~~~vs   79 (271)
T d1kr2a_           5 VVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDA---YKKKGLIPAYHRVIMAELATKNSKWVEVD   79 (271)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGG---GCCTTCCCHHHHHHHHHHHTTTCSSEEEC
T ss_pred             EEEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCC---CcCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence            56688999999999999999988753    2    33444333332   1344788999999888 456788888874

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.5e-05  Score=69.16  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhcC--CEEEEEEecCccccCCCCCCCCHHHHH-HhhhhccccceEEE
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVRGSYHPIMHLHERS-LSVLACRYVDEVII  324 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~g--d~LiVgV~~D~~v~~~~~pi~~~~ER~-~~v~~~~~VD~Vvi  324 (420)
                      ..+++..|+|||+|.||+.+++.|++..  |.|++.++.+...+  ........+|. .+...+...+.+..
T Consensus         3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (213)
T d1k4ma_           3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHR--PQPEANSVQRKHMLELAIADKPLFTL   72 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTS--CCCSSCHHHHHHHHHHHHTTCTTEEE
T ss_pred             ccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCchh--cccccchHHHHHHHHHHhhcccceee
Confidence            4678899999999999999999999864  88999888875322  22334444444 44444444444443

>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=97.55  E-value=9.5e-05  Score=66.45  Aligned_cols=94  Identities=12%  Similarity=0.098  Sum_probs=58.3

Q ss_pred             CeEEEEcCccccCCHHHHHHHHHHHhc--CCEEEEEEecCccccCCCCCCCCHHHHHHhhh-hccccceEEEc-----CC
Q 014671          256 ARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRGSYHPIMHLHERSLSVL-ACRYVDEVIIG-----AP  327 (420)
Q Consensus       256 ~~iV~~~G~FDl~H~GHi~~L~~Ak~~--gd~LiVgV~~D~~v~~~~~pi~~~~ER~~~v~-~~~~VD~Vvi~-----~~  327 (420)
                      ++|+. -|||||+|.||+.+.+.|.+.  .|.+++-.+....-+ +..+..+...|.+++. ++..-+.+.+.     .+
T Consensus        20 ~~v~~-f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~p~K-~~~~~~~~~~r~~m~~~a~~~~~~~~is~~E~~~~   97 (223)
T d1jhda2          20 SKVVA-FQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLKK-GDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDML   97 (223)
T ss_dssp             SSEEE-EEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECCCCT-TCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCC
T ss_pred             CEEEE-eeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCCCCc-CCCccccHHHHHHHHHHhhcCCCceeecccccccc
Confidence            44554 499999999999999999975  478887776665222 1125567778877766 45555555442     21


Q ss_pred             -CCchHHHHhhc-----CccEEEEcCCcCC
Q 014671          328 -WEVTKDMITTF-----NICLVVHGTVSET  351 (420)
Q Consensus       328 -~~~~~~~i~~~-----~~d~vv~G~d~~~  351 (420)
                       ...+.+.++.+     +..+++-|.|...
T Consensus        98 ~~syt~~tl~~l~~~~~~~~~~iiG~D~~~  127 (223)
T d1jhda2          98 YAGPREAVLHAYFRQNMGATHFIIGRDHAG  127 (223)
T ss_dssp             CCTHHHHHHHHHHHHHTTCSEEEECTTTTC
T ss_pred             CCCcHHHHHHHHHHhCCcceEEEEeecccc
Confidence             12333433332     3467777877533

>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.027  Score=50.05  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             eEEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc---c-ccEEEeCCCcccc
Q 014671           66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---W-VDEVIANAPYAIT  141 (420)
Q Consensus        66 ~~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~---~-VD~vi~~~p~~~~  141 (420)
                      ++|++.=+=+++|.||..+++.|.+.+|.|++-+.--     .+.+-=++.+-|.+..+.+.   . -+.++. .|+...
T Consensus        21 ~~v~aFqTrnp~Hr~He~i~~~a~~~~~~lli~p~vG-----~~k~gd~~~~~r~~~y~~~~~~~~~~~~v~l-~~~~~~   94 (214)
T d1v47a2          21 RKVVAFQTRNAPHRAHEYLIRLGLELADGVLVHPILG-----AKKPDDFPTEVIVEAYQALIRDFLPQERVAF-FGLATP   94 (214)
T ss_dssp             CSEEEEEESSCCCHHHHHHHHHHHHHSSEEEEEEBCS-----CCCTTSCCHHHHHHHHHHHHHHHSCGGGEEE-CCBCSC
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHHhcCCEEEeeeec-----cCCccccCHHHHHHHHHHHHhhcCCCCeEEE-EecCcc
Confidence            3566644569999999999999999999766544321     12234566677766655421   1 233443 222221


Q ss_pred             -------HHHHHHHHh-hcCccEEEEcCCCC
Q 014671          142 -------EQFMNRLFN-EHKIDYIIHGDDPC  164 (420)
Q Consensus       142 -------~~fl~~ll~-~~~~d~vV~G~D~~  164 (420)
                             +..+..++. .++|+.+++|.|..
T Consensus        95 m~yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (214)
T d1v47a2          95 MRYAGPKEAVFHALVRKNFGATHFLVGRDHA  125 (214)
T ss_dssp             CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred             cccccchHHHHHHHHHHhcCCCeEEEcCcCC
Confidence                   456666664 59999999999975

>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.07  Score=47.48  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHh-CCeEEEEEecchhhhhcCCCCCCcHHHHHHHHhccc---cccEEEeCCCccc
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIANAPYAI  140 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~l-gd~LiVgV~sd~~i~~~K~~pi~t~eER~~ll~~~~---~VD~vi~~~p~~~  140 (420)
                      -++|++.=+=+++|.||..+++.|.+. ++.|+|-+.    +-..| +-=++.+-|++..+.+.   .-+.++. .++..
T Consensus        20 ~~~v~afqTrnp~Hr~He~i~~~a~~~~~~~lli~p~----vg~~k-~gd~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~   93 (221)
T d1g8fa2          20 WDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPV----VGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFL-SLLPL   93 (221)
T ss_dssp             CCCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEB----CSBCS-TTCCCHHHHHHHHHHHGGGSCTTSEEE-CCBCC
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEeec----ccCCc-cccCCHHHHHHHHHHHHHhcCCCeEEE-Eeccc
Confidence            346777778899999999999998765 444444222    21222 23456677776655421   1233443 23322


Q ss_pred             c-------HHHHHHHH-hhcCccEEEEcCCCC
Q 014671          141 T-------EQFMNRLF-NEHKIDYIIHGDDPC  164 (420)
Q Consensus       141 ~-------~~fl~~ll-~~~~~d~vV~G~D~~  164 (420)
                      .       +..+..++ +.++|..+++|.|..
T Consensus        94 ~m~yaGPrEA~lhAiirkN~GcthfiVGRDHA  125 (221)
T d1g8fa2          94 AMRMSGDREAVWHAIIRKNYGASHFIVGRDHA  125 (221)
T ss_dssp             BCCCCHHHHHHHHHHHHHHTTCSEEECCTTTT
T ss_pred             cccccchHHHHHHHHHHHhcCCCeeEeccccc
Confidence            2       46666666 459999999999976

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.03  Score=51.72  Aligned_cols=66  Identities=21%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             EEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-hhcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        68 V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-~~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      +-+..+.=.+|.||+.|+++|++.+|.++|.+--+|.= .....  ...-+.++=+++++.. +||.|+.
T Consensus        19 i~~VPTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~   87 (276)
T d1v8fa_          19 VGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFA   87 (276)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             EEEEcCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHHHHhC-CCCEEEe
Confidence            55566777899999999999999999999988777642 22222  3455677778889886 8999985

>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.093  Score=47.10  Aligned_cols=97  Identities=14%  Similarity=0.031  Sum_probs=57.5

Q ss_pred             ceEEEEecccCcCCHHHHHHHHHHHHhC--C---eEEEEEecchhhhhcCCCCCCcHHHHHH----HHhcc-ccccEEEe
Q 014671           65 RVRVYMDGCFDLMHYGHANALRQAKALG--D---ELVVGVVSDEEIIANKGPPVLSMEERLA----LVSGL-KWVDEVIA  134 (420)
Q Consensus        65 ~~~V~~~G~FD~lH~GH~~lL~qA~~lg--d---~LiVgV~sd~~i~~~K~~pi~t~eER~~----ll~~~-~~VD~vi~  134 (420)
                      -++|++.=+=+++|.||..+++.|.+.+  +   .-.+.+++  .+ ..+.+-=++.+-|++    ++..- -.-+.++.
T Consensus        23 w~~VvaFqTRNp~HraHe~i~~~a~~~~~~~~~~~~~lli~P--vv-G~~k~gD~~~~~~~~~y~~l~~~~~~~~~~~~l   99 (235)
T d1x6va2          23 ADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHP--LG-GWTKDDDVPLMWRMKQHAAVLEEGVLNPETTVV   99 (235)
T ss_dssp             CSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCSSEEEEEEE--BC-SCCCTTSCCHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred             CCeEEEeecCCCCcHHHHHHHHHHHHHHHhccccCCeEEEee--cc-ccCCCCccChHHHHHHHHHHHHhccCCCCcEEE
Confidence            3467777788999999999999987643  1   11223333  11 122234566777765    34331 12344443


Q ss_pred             -CCCcc--c---cHHHHHHHHh-hcCccEEEEcCCCC
Q 014671          135 -NAPYA--I---TEQFMNRLFN-EHKIDYIIHGDDPC  164 (420)
Q Consensus       135 -~~p~~--~---~~~fl~~ll~-~~~~d~vV~G~D~~  164 (420)
                       ..|..  +   .+..+..+++ .++|..+++|.|..
T Consensus       100 ~~l~~~mryAGPrEAllhAiiRkN~GcThfiVGRDHA  136 (235)
T d1x6va2         100 AIFPSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPA  136 (235)
T ss_dssp             CCBCCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTT
T ss_pred             EeccccccccccHHHHHHHHHHHhcCCCeEEEcCccc
Confidence             12221  1   1466777664 59999999999986

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.016  Score=53.80  Aligned_cols=67  Identities=24%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             EEEEecccCcCCHHHHHHHHHHHHhCCeEEEEEecchhh-hhcCC--CCCCcHHHHHHHHhccccccEEEe
Q 014671           67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-IANKG--PPVLSMEERLALVSGLKWVDEVIA  134 (420)
Q Consensus        67 ~V~~~G~FD~lH~GH~~lL~qA~~lgd~LiVgV~sd~~i-~~~K~--~pi~t~eER~~ll~~~~~VD~vi~  134 (420)
                      ++-+..+.=.+|-||+.|+++|++.+|.++|.+--+|.= .....  ...-+.+.=+++++.. +||.|+.
T Consensus        23 ~ig~VPTMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~-~vd~vf~   92 (282)
T d1ihoa_          23 RVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR-KVDLVFA   92 (282)
T ss_dssp             CEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred             cEEEEcCCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhccCccHHHHHHHHHhc-CCcEEEe
Confidence            455566777899999999999999999999888766631 11111  2345677788888885 8999985

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.025  Score=52.46  Aligned_cols=76  Identities=20%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             hhcccCCCCceEEEEecccCcCCHHHHHHHHHHHH-hCCeEEEEEecchh-hhhcCC--CCCCcHHHHHHHHhccccccE
Q 014671           56 HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKA-LGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDE  131 (420)
Q Consensus        56 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~-lgd~LiVgV~sd~~-i~~~K~--~pi~t~eER~~ll~~~~~VD~  131 (420)
                      ...++..++  ++-+.-+.--+|.||+.|+++|++ .+|.++|.+--+|. ......  ...-+.++=+++++.. +||.
T Consensus        22 ~~~~~~~g~--~i~~VPTMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~   98 (286)
T d2a84a1          22 SRALRLTGR--RVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEI   98 (286)
T ss_dssp             HHHHHHTTC--CEEEEEECSSCCHHHHHHHHHHHTSTTCEEEEEECCCCCCTTC----------CCSHHHHHHHT-TCCE
T ss_pred             HHHHHHhCC--eEEEEeCCcchhHHHHHHHHHHhhcCCCEEEEEEeecccccCccccCccCCcchhhhhHHHhcc-CCce
Confidence            444444333  455677888899999999999997 68988888866553 111111  1223344456667665 8998


Q ss_pred             EEe
Q 014671          132 VIA  134 (420)
Q Consensus       132 vi~  134 (420)
                      ++.
T Consensus        99 vf~  101 (286)
T d2a84a1          99 AFT  101 (286)
T ss_dssp             EEC
T ss_pred             eec
Confidence            874

>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]

Probab=92.80  E-value=0.077  Score=48.81  Aligned_cols=58  Identities=19%  Similarity=0.345  Sum_probs=40.8

Q ss_pred             cCCHHHHHHHHHHHhcCCEEEEEEecCccccC-CC---CCCCCHHHHHHhhhhccccceEEEc
Q 014671          267 LFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-SY---HPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       267 l~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~~---~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      -+|.||+.++++|++.+|.+||.|.-++.=-. +.   +-.-++++=.+.+++. .||.|..+
T Consensus        27 aLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-~vd~vf~P   88 (276)
T d1v8fa_          27 YLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA-GVDLLFAP   88 (276)
T ss_dssp             SCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT-TCSEEECC
T ss_pred             cHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHHHHhC-CCCEEEec
Confidence            48999999999999999999999988764322 11   1233444445555554 47877664

>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.052  Score=50.16  Aligned_cols=69  Identities=20%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHhcCCEEEEEEecCccccC-C---CCCCCCHHHHHHhhhhccccceEEEc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRG-S---YHPIMHLHERSLSVLACRYVDEVIIG  325 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgV~~D~~v~~-~---~~pi~~~~ER~~~v~~~~~VD~Vvi~  325 (420)
                      +++|.+++ |==-+|.||+.++++|++.+|.+||.|..++.=-. +   .+-.-++++=.+.+++. .||.|..+
T Consensus        21 g~~ig~VP-TMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~-~vd~vf~P   93 (282)
T d1ihoa_          21 GKRVALVP-TMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR-KVDLVFAP   93 (282)
T ss_dssp             TCCEEEEE-ECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT-TCSEEECC
T ss_pred             CCcEEEEc-CCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCcccchhhccCccHHHHHHHHHhc-CCcEEEec
Confidence            34555543 22348999999999999999999999997763221 0   01123444445555554 47877654

>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.84  E-value=0.15  Score=47.09  Aligned_cols=39  Identities=23%  Similarity=0.618  Sum_probs=31.7

Q ss_pred             CCeEEEEcCccccCCHHHHHHHHHHHh-cCCEEEEEEecCc
Q 014671          255 NARVVYIDGAFDLFHAGHVEILKKARQ-LGDFLLVGIYTDQ  294 (420)
Q Consensus       255 ~~~iV~~~G~FDl~H~GHi~~L~~Ak~-~gd~LiVgV~~D~  294 (420)
                      +++|.+++ |=--+|.||+.++++|++ .+|.+||.|.-++
T Consensus        29 g~~i~~VP-TMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP   68 (286)
T d2a84a1          29 GRRVMLVP-TMGALHEGHLALVRAAKRVPGSVVVVSIFVNP   68 (286)
T ss_dssp             TCCEEEEE-ECSSCCHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred             CCeEEEEe-CCcchhHHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            45666654 455699999999999997 6999999998775