Citrus Sinensis ID: 014688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE
ccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cccccHHEEEHcccccccccccEccccccccHHHccccccccccEEEccccEEEEEEccccccEEEEccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccEEEEEEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
MASMTSRFVAKnctnlhaseasfrptgssILVGVAQAHLDlrgglsaidhgkslaieskpqnhivalaapysiiqnsrcSQVLCKAAAnvsgdvpskspggmsqYEQIIEILTTLFPVWVILGTIIGIykpsavtwletdLFTIGLGFLMLSMGLTLTFEDFRRclrnpwtvgIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLIlvsccpggqasnvATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLagqlvpvdaaglAISTFQVVLVPTVVGvlaneffpkftskiisvTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLskisfgestsrTISIECGMQSSALGFLLAQKhftnplvavpSAVSVVCMALGGSALAvfwrnqpipvddkddfke
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSAlavfwrnqpipvddkddfke
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQvvlvptvvgvLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNplvavpsavsvvCMALGGSALAVFWRNQPIPVDDKDDFKE
************CT***********TGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANV*************QYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQP***********
******R**AKNCTNLHASEASFRP*******************************************************************************YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFW***************
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE
****TSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQ************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q1EBV7409 Sodium/pyruvate cotranspo yes no 0.9 0.924 0.829 1e-177
Q5VRB2419 Probable sodium/metabolit yes no 0.816 0.818 0.875 1e-170
Q93YR2401 Probable sodium/metabolit no no 0.771 0.807 0.449 8e-73
Q7XVB3406 Probable sodium/metabolit no no 0.783 0.810 0.452 3e-69
Q8RXE8431 Probable sodium/metabolit no no 0.707 0.689 0.403 6e-54
O34524321 Uncharacterized sodium-de yes no 0.688 0.900 0.435 8e-54
Q6K739423 Probable sodium/metabolit no no 0.707 0.702 0.394 2e-53
F4JPW1407 Probable sodium/metabolit no no 0.745 0.769 0.363 4e-51
Q8VYY4409 Probable sodium/metabolit no no 0.747 0.767 0.344 9e-51
Q650U0401 Probable sodium/metabolit no no 0.719 0.753 0.367 2e-48
>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  621 bits (1602), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/386 (82%), Positives = 349/386 (90%), Gaps = 8/386 (2%)

Query: 36  QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
           Q HLD    +S  + G SL I+ SKP + + AL A  S        +V+CKAAA VSGD+
Sbjct: 31  QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEATSS-------RRVVCKAAAGVSGDL 83

Query: 95  PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
           P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct: 84  PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query: 155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
           LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct: 144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query: 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLV 274
           ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQVVLV
Sbjct: 204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query: 275 PTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
           PT++GVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct: 264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query: 335 HAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCM 394
           HAAAFA+GYW+SK SFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCM
Sbjct: 324 HAAAFAIGYWISKFSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCM 383

Query: 395 ALGGSALAVFWRNQPIPVDDKDDFKE 420
           ALGGS LAVFWRN PIP DDKDDFKE
Sbjct: 384 ALGGSGLAVFWRNLPIPADDKDDFKE 409
Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1 Back     alignment and function description
>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1 Back     alignment and function description
>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2 Back     alignment and function description
>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1 Back     alignment and function description
>sp|O34524|YOCS_BACSU Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1 Back     alignment and function description
>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1 Back     alignment and function description
>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1 Back     alignment and function description
>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
297738888417 unnamed protein product [Vitis vinifera] 0.992 1.0 0.835 0.0
359484381414 PREDICTED: uncharacterized sodium-depend 0.983 0.997 0.836 0.0
118488857420 unknown [Populus trichocarpa x Populus d 0.980 0.980 0.800 0.0
147784076433 hypothetical protein VITISV_002026 [Viti 0.992 0.963 0.777 1e-180
280967729444 transmembrane domain protein [Malus x do 0.992 0.939 0.747 1e-179
255546619387 sodium-bile acid cotransporter, putative 0.921 1.0 0.759 1e-177
357477833410 Bile acid Na+ symporter family protein [ 0.895 0.917 0.829 1e-176
312281731412 unnamed protein product [Thellungiella h 0.904 0.922 0.834 1e-175
30683305409 Sodium bile acid symporter-like protein 0.9 0.924 0.829 1e-175
297825925409 hypothetical protein ARALYDRAFT_901497 [ 0.9 0.924 0.834 1e-175
>gi|297738888|emb|CBI28133.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/420 (83%), Positives = 381/420 (90%), Gaps = 3/420 (0%)

Query: 1   MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKP 60
           MASM SRFV K+C  L   +A + P+  S+   +    +++RGG S  + G++LAI++K 
Sbjct: 1   MASM-SRFVLKDC-KLQPFDALYGPSSCSLARRI-HTRVEVRGGCSLPEKGRNLAIQNKQ 57

Query: 61  QNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWV 120
            + IVAL+ P SIIQ SR S +LCKAAANVSGDVP  +P GMSQYE+IIE LTTLFPVWV
Sbjct: 58  HSSIVALSGPSSIIQASRNSHILCKAAANVSGDVPGNTPAGMSQYERIIETLTTLFPVWV 117

Query: 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180
           ILGT+IGIYKP+AVTWLETDLFTI LGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQY
Sbjct: 118 ILGTVIGIYKPAAVTWLETDLFTICLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQY 177

Query: 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 240
           LIKPMLGF I MTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG
Sbjct: 178 LIKPMLGFFIVMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 237

Query: 241 AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300
           AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTV+GVL+NEFFPKFTSKI++VTPL+
Sbjct: 238 AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVIGVLSNEFFPKFTSKIVTVTPLV 297

Query: 301 GVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISI 360
           GVILTTLLCASPIG+VS VLKTQGAQLI PVA+LHAAAFALGYW+SKISFGESTSRTISI
Sbjct: 298 GVILTTLLCASPIGKVSDVLKTQGAQLILPVAILHAAAFALGYWVSKISFGESTSRTISI 357

Query: 361 ECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE 420
           ECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE
Sbjct: 358 ECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484381|ref|XP_002284920.2| PREDICTED: uncharacterized sodium-dependent transporter yocS [Vitis vinifera] Back     alignment and taxonomy information
>gi|118488857|gb|ABK96238.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|147784076|emb|CAN76830.1| hypothetical protein VITISV_002026 [Vitis vinifera] Back     alignment and taxonomy information
>gi|280967729|gb|ACZ98535.1| transmembrane domain protein [Malus x domestica] Back     alignment and taxonomy information
>gi|255546619|ref|XP_002514369.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223546825|gb|EEF48323.1| sodium-bile acid cotransporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357477833|ref|XP_003609202.1| Bile acid Na+ symporter family protein [Medicago truncatula] gi|355510257|gb|AES91399.1| Bile acid Na+ symporter family protein [Medicago truncatula] gi|388502676|gb|AFK39404.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|312281731|dbj|BAJ33731.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|30683305|ref|NP_850089.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana] gi|122178084|sp|Q1EBV7.1|BASS2_ARATH RecName: Full=Sodium/pyruvate cotransporter BASS2, chloroplastic; AltName: Full=Bile acid transporter 1; AltName: Full=Bile acid-sodium symporter family protein 2; Flags: Precursor gi|109134135|gb|ABG25066.1| At2g26900 [Arabidopsis thaliana] gi|330252811|gb|AEC07905.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825925|ref|XP_002880845.1| hypothetical protein ARALYDRAFT_901497 [Arabidopsis lyrata subsp. lyrata] gi|297326684|gb|EFH57104.1| hypothetical protein ARALYDRAFT_901497 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2039533409 BASS2 "AT2G26900" [Arabidopsis 0.9 0.924 0.779 8.2e-154
TAIR|locus:2202935401 AT1G78560 "AT1G78560" [Arabido 0.771 0.807 0.406 1.4e-62
TAIR|locus:2094483431 AT3G25410 "AT3G25410" [Arabido 0.7 0.682 0.364 1.6e-47
TAIR|locus:2118021407 BAT5 "AT4G12030" [Arabidopsis 0.745 0.769 0.327 5.7e-43
TAIR|locus:2132664409 AT4G22840 "AT4G22840" [Arabido 0.747 0.767 0.317 5.7e-43
TIGR_CMR|BA_3574322 BA_3574 "bile acid transporter 0.719 0.937 0.360 3.2e-42
UNIPROTKB|Q8E8Y1308 SO_4519 "Sodium-dependent tran 0.695 0.948 0.288 4.1e-33
TIGR_CMR|SO_4519308 SO_4519 "sodium-dependent tran 0.695 0.948 0.288 4.1e-33
UNIPROTKB|F6PLG8305 SLC10A2 "Uncharacterized prote 0.526 0.724 0.322 7.6e-25
UNIPROTKB|E1BSN2359 SLC10A2 "Uncharacterized prote 0.547 0.640 0.289 9.7e-25
TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
 Identities = 301/386 (77%), Positives = 329/386 (85%)

Query:    36 QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
             Q HLD    +S  + G SL I+ SKP + + AL A      +SR  +V+CKAAA VSGD+
Sbjct:    31 QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEAT-----SSR--RVVCKAAAGVSGDL 83

Query:    95 PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
             P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct:    84 PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query:   155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
             LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct:   144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query:   215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXX 274
             ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQ    
Sbjct:   204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query:   275 XXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
                   LANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct:   264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query:   335 HAAAFALGYWLSKISFGESTSRTISIECGMQSSALGFLLAQKHFTNXXXXXXXXXXXXCM 394
             HAAAFA+GYW+SK SFGESTSRTISIECGMQSSALGFLLAQKHFTN            CM
Sbjct:   324 HAAAFAIGYWISKFSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCM 383

Query:   395 ALGGSALAVFWRNQPIPVDDKDDFKE 420
             ALGGS LAVFWRN PIP DDKDDFKE
Sbjct:   384 ALGGSGLAVFWRNLPIPADDKDDFKE 409
GO:0005215 "transporter activity" evidence=ISS
GO:0006814 "sodium ion transport" evidence=ISS
GO:0008508 "bile acid:sodium symporter activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=ISS
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006849 "plasma membrane pyruvate transport" evidence=IDA
GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSN2 SLC10A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1EBV7BASS2_ARATHNo assigned EC number0.82900.90.9242yesno
Q5VRB2BASS2_ORYSJNo assigned EC number0.8750.81660.8186yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016816001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (417 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
TIGR00841286 TIGR00841, bass, bile acid transporter 8e-98
COG0385319 COG0385, COG0385, Predicted Na+-dependent transpor 6e-70
pfam01758188 pfam01758, SBF, Sodium Bile acid symporter family 6e-50
pfam13593313 pfam13593, DUF4137, SBF-like CPA transporter famil 4e-13
COG0798342 COG0798, ACR3, Arsenite efflux pump ACR3 and relat 8e-09
TIGR00832328 TIGR00832, acr3, arsenical-resistance protein 4e-07
COG0679311 COG0679, COG0679, Predicted permeases [General fun 2e-04
>gnl|CDD|188087 TIGR00841, bass, bile acid transporter Back     alignment and domain information 
 Score =  293 bits (753), Expect = 8e-98
 Identities = 122/278 (43%), Positives = 160/278 (57%), Gaps = 9/278 (3%)

Query: 134 VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT 193
            T L T L  + L  +M SMG TL FEDF+  LR PW V IG LAQY I P+ GF++A  
Sbjct: 3   STNLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV 61

Query: 194 LKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253
            KL   LA G+++V CCPGG ASNV TY+ KG++ALS+ MTTCST+ A+ M PLL  + A
Sbjct: 62  FKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYA 121

Query: 254 GQLVP----VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLC 309
              V     V   G+ +S   +VL+P  +G+L     P+  +KII    LI V L +++ 
Sbjct: 122 KMWVDGTLVVPYLGIGLS-LVIVLIPVSIGMLVKHKLPQI-AKIILKVGLISVFLLSVII 179

Query: 310 ASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGES-TSRTISIECGMQSSA 368
           A   G     L T G  L+    LL  A F LGY L+K++       RTISIE GMQ+S 
Sbjct: 180 AVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ 239

Query: 369 LGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWR 406
           L   +AQ  F+ P VAVPSA+  +  AL   A A+ + 
Sbjct: 240 LCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFL 276

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286
>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family Back     alignment and domain information
>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|213563 TIGR00832, acr3, arsenical-resistance protein Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
COG0385319 Predicted Na+-dependent transporter [General funct 100.0
TIGR00832328 acr3 arsenical-resistance protein. The first prote 100.0
TIGR00841286 bass bile acid transporter. Functionally character 100.0
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 100.0
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 100.0
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 99.96
KOG2718371 consensus Na+-bile acid cotransporter [Inorganic i 99.96
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 99.15
KOG4821287 consensus Predicted Na+-dependent cotransporter [G 99.11
PRK09903314 putative transporter YfdV; Provisional 99.09
COG0679311 Predicted permeases [General function prediction o 98.89
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 98.66
KOG2718371 consensus Na+-bile acid cotransporter [Inorganic i 98.35
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 98.28
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 98.14
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 97.57
COG3180352 AbrB Putative ammonia monooxygenase [General funct 97.49
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 97.42
PRK03562 621 glutathione-regulated potassium-efflux system prot 97.42
COG0475397 KefB Kef-type K+ transport systems, membrane compo 97.38
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 97.23
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 96.94
PRK03659 601 glutathione-regulated potassium-efflux system prot 96.93
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 96.71
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 96.41
PF03547 385 Mem_trans: Membrane transport protein; InterPro: I 96.38
PRK10669 558 putative cation:proton antiport protein; Provision 96.31
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.16
PRK05326 562 potassium/proton antiporter; Reviewed 95.99
TIGR00698335 conserved hypothetical integral membrane protein. 95.29
COG2855334 Predicted membrane protein [Function unknown] 95.03
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 95.02
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 94.81
TIGR00946 321 2a69 he Auxin Efflux Carrier (AEC) Family. 94.68
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 94.55
PRK09903 314 putative transporter YfdV; Provisional 94.54
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 94.31
TIGR00659226 conserved hypothetical protein TIGR00659. Members 94.24
PRK04288232 antiholin-like protein LrgB; Provisional 93.94
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 92.9
PRK10711231 hypothetical protein; Provisional 92.68
COG0679 311 Predicted permeases [General function prediction o 92.53
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 92.05
TIGR00831 525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 91.4
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 91.12
PF03977360 OAD_beta: Na+-transporting oxaloacetate decarboxyl 89.68
COG3180352 AbrB Putative ammonia monooxygenase [General funct 89.64
PRK15086372 ethanolamine utilization protein EutH; Provisional 89.26
PF03956191 DUF340: Membrane protein of unknown function (DUF3 87.56
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 85.88
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 85.07
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 84.97
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 84.96
TIGR03136399 malonate_biotin Na+-transporting malonate decarbox 84.86
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 82.45
PRK03562621 glutathione-regulated potassium-efflux system prot 81.33
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 80.83
TIGR03802 562 Asp_Ala_antiprt aspartate-alanine antiporter. All 80.77
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-53  Score=415.03  Aligned_cols=309  Identities=36%  Similarity=0.583  Sum_probs=288.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHHHHHHHH
Q 014688          106 EQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM  185 (420)
Q Consensus       106 ~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~~vl~Pl  185 (420)
                      ++...+....+++|+++...++...|+.+.|++ .+++++++++||.+|++++.+|+++.++|||.+..++.+||++||+
T Consensus         5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl   83 (319)
T COG0385           5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL   83 (319)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            344455577899999999999999999999997 6889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccChHHHH
Q 014688          186 LGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA  265 (420)
Q Consensus       186 la~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~id~~~l~  265 (420)
                      ++|++++++++||+++.|+++++|||+|+.||++|+++|||+++|+.++.+||+++++++|+++.+++|+.+++|.++++
T Consensus        84 la~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~  163 (319)
T COG0385          84 LALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMF  163 (319)
T ss_pred             HHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 014688          266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWL  345 (420)
Q Consensus       266 ~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f~lG~ll  345 (420)
                      +++++.+++|+++|+++|++.|++.++.++..+.++...+.+++....+.+.+........+...+++++.++|.+||+.
T Consensus       164 ~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~  243 (319)
T COG0385         164 LSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFG  243 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888887777777777777777777778888889999999999999


Q ss_pred             hhc-CCCccCcceehhhhhhchHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 014688          346 SKI-SFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDK  415 (420)
Q Consensus       346 ~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~~pl~avP~~v~~~~q~l~gs~la~~wr~~~~~~~~~  415 (420)
                      +|+ |+++++++|+++|+|+||.++|.++|..+|++|.+++|.++|+++|++.+++++.+|+||+.+..++
T Consensus       244 ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~~~~~~~  314 (319)
T COG0385         244 ARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRILKAAEK  314 (319)
T ss_pred             HHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            999 9999999999999999999999999999765599999999999999999999999999986554443

>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only] Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>PRK15086 ethanolamine utilization protein EutH; Provisional Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
3zuy_A323 Crystal Structure Of A Bacterial Homologue Of The B 4e-31
3zux_A332 Crystal Structure Of A Bacterial Homologue Of The B 2e-30
>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 3/224 (1%)
Query: 146 LGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLI 205
           LG +M  MGLTL   DF    ++P  V IG +AQ+ I P   ++++  L L A +A G+I
Sbjct: 44  LGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVI 103
Query: 206 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265
           LV CCPGG ASNV TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ 
Sbjct: 104 LVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGML 163
Query: 266 ISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           +S  +          + ++     T K+    PL+ V    L+  + +G     +   G 
Sbjct: 164 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESG- 222
Query: 326 QLIFPVALLH-AAAFALGYWLSKIS-FGESTSRTISIECGMQSS 367
            LIF V +LH    + LG++ +K +       +T++IE GMQ+S
Sbjct: 223 LLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLTIEVGMQNS 266
>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 1e-113
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332 Back     alignment and structure
 Score =  334 bits (858), Expect = e-113
 Identities = 104/313 (33%), Positives = 166/313 (53%), Gaps = 3/313 (0%)

Query: 99  PGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLT 158
              M+   +I   +   F +W  L      + P    W         LG +M  MGLTL 
Sbjct: 3   AASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLK 61

Query: 159 FEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV 218
             DF    ++P  V IG +AQ+ I P   + ++  L L A +A G+ILV CCPGG ASNV
Sbjct: 62  PSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV 121

Query: 219 ATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVV 278
            TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ +S  ++VL+P V+
Sbjct: 122 MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVL 181

Query: 279 GVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAA 338
           G++ ++     T K+    PL+ V    L+  + +G     +   G  +   V L +   
Sbjct: 182 GLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIG 241

Query: 339 FALGYWLSKIS-FGESTSRTISIECGMQSSALGFLLAQKHFT-NPLVAVPSAVSVVCMAL 396
           + LG++ +K +       + ++IE GMQ+S L   LA  HF   P+VAVP A+  V   +
Sbjct: 242 YLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNI 301

Query: 397 GGSALAVFWRNQP 409
            GS LA +W  + 
Sbjct: 302 SGSLLATYWAAKA 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 100.0
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=100.00  E-value=3.5e-53  Score=424.09  Aligned_cols=314  Identities=33%  Similarity=0.596  Sum_probs=290.2

Q ss_pred             CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhccCCChHHHHHHhcCchHHHHHHHHH
Q 014688          100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ  179 (420)
Q Consensus       100 ~~~~~~~r~~~~l~~~~~l~ii~gv~lgl~~P~~~~~l~~~~~~~~L~l~mf~~Gl~l~~~~l~~~l~~p~~l~~~l~~~  179 (420)
                      ++|+.++|+.+|+.+++++|+++++++|.++|+.+.+++ ..+++.++++||.+|++++.+|+++.++|||.+..++++|
T Consensus         4 ~~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~   82 (332)
T 3zux_A            4 ASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQ   82 (332)
T ss_dssp             ---CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHH
Confidence            468999999999999999999999999999999999987 7889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCchhhhhhhhhcccCchhhHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 014688          180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPV  259 (420)
Q Consensus       180 ~vl~Plla~~l~~~~~l~~~la~GliLla~~P~~~~s~v~t~lagGn~~Lav~~t~istlla~~~~Pl~l~ll~G~~v~i  259 (420)
                      ++++|+++|+++++++++++++.|+++++||||+.+|++||+++|||+++++.++.+||+++++++|+++.++.|+.+++
T Consensus        83 ~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v  162 (332)
T 3zux_A           83 FAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI  162 (332)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHhhhhhhHHHHHHHHHHHHH
Q 014688          260 DAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAF  339 (420)
Q Consensus       260 d~~~l~~~ll~~VllPlllG~llr~~~p~~~~ri~~~~~~is~l~lill~~~~~a~~~~~l~~~~~~ill~~~ll~~~~f  339 (420)
                      |+.+++.+++.++++|+++|+++|+++|++.+|+++..+.++...+++++...++.+.+.+.+.+..++..+++++.++|
T Consensus       163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  242 (332)
T 3zux_A          163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGY  242 (332)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888877776666666677777777777788888889999999


Q ss_pred             HHHHHHhhc-CCCccCcceehhhhhhchHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 014688          340 ALGYWLSKI-SFGESTSRTISIECGMQSSALGFLLAQKHFT-NPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDD  414 (420)
Q Consensus       340 ~lG~ll~r~-~l~~~~~~tlsi~~G~rNs~Lal~lA~~~F~-~pl~avP~~v~~~~q~l~gs~la~~wr~~~~~~~~  414 (420)
                      .+||+++|+ |+++++++|+++|+|+||+++|+++|..+|+ +|.+++|.++|+++|++.|++++.+|+|++.+.++
T Consensus       243 ~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~  319 (332)
T 3zux_A          243 LLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKK  319 (332)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence            999999999 9999999999999999999999999999996 68999999999999999999999999998755443

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00