Citrus Sinensis ID: 014700

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MAASNSIEPRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccccccccccccccccEEEccHHHHHccccEEEEEcccHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHcccccEEEEccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccHHHHHHccccccHHHHHHHccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccccccccccEEEEccccEcccccccccEEEEEEEcccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccccHccccccccccEEEcccHHHHHHcccEEEEEEcHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEcHcHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHHHHHHccccHHHHHHHcccEEEccccHHHHHcc
Coil and Loop (DISEMBL)
maasnsieprlflnpifttstttnsstslHIQNfklklphfptknptlvftlnsssgsattnnnndntiitpypddpdpepvsavsseirtrdgrdrRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAvcqsinekhcncryfpeqklpenviaTTDAKTALLGADyclhampvqfsssflegisdyvdpglpfislskglelntLRMMSQIIPqalrnprqpfialsgpSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHlristssdvtGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATkmgakpatitglsgtgdIMLTCFVNLsrnrtvgvrlgsgekLDDILSSMNQvlvnpsmqpllgkl
Flexible Loop (DISEMBL)
maasnsieprlflNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITpypddpdpepVSAVsseirtrdgrdrrkivkvaweklvrwsrtwrskaktdilertnkVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLaskhlristssDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMnqvlvnpsmqpllgkl
Low Complexity Region (SEG)
MAASNSIEPRLFLNPIFttstttnsstsLHIQNFKLKLPHFPTKNPTLVFtlnsssgsattnnnndntIITpypddpdpepVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Disordered region (IsUnstruct)
**********LFLNPIFTTST*****TSLHIQNFKLKLPHFPTKNPTLVFT***********************************************KIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDIL*******************
Disordered Region (DISOPRED)
**********LFLNPIFTT*************NFKLKLPHFPTKNPTLVFTLNSS***********************************************VAWEKLVRW******************VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Disordered Region (DISEMBL)
********PRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Disordered Region (DISPRO)
*************************STSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNT**TPYPD*****PVSAVSS**RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASNSIEPRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q949Q0	420	Glycerol-3-phosphate dehy	yes	no	0.783	0.783	0.839	1e-162
Q8H2J9	440	Glycerol-3-phosphate dehy	yes	no	0.745	0.711	0.782	1e-138
B0SKD9	333	Glycerol-3-phosphate dehy	yes	no	0.659	0.831	0.421	4e-57
B0SAV3	333	Glycerol-3-phosphate dehy	yes	no	0.659	0.831	0.421	4e-57
Q8EZB6	335	Glycerol-3-phosphate dehy	yes	no	0.659	0.826	0.417	4e-57
P61742	335	Glycerol-3-phosphate dehy	yes	no	0.659	0.826	0.414	4e-57
Q04VF9	335	Glycerol-3-phosphate dehy	yes	no	0.659	0.826	0.407	1e-56
Q04Y15	335	Glycerol-3-phosphate dehy	yes	no	0.659	0.826	0.407	1e-56
A1V9Y4	330	Glycerol-3-phosphate dehy	yes	no	0.659	0.839	0.405	3e-56
P61739	330	Glycerol-3-phosphate dehy	yes	no	0.659	0.839	0.401	2e-55

>sp|Q949Q0|GPDA2_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thaliana GN=GLY1 PE=1 SV=1

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/331 (83%), Positives = 301/331 (90%), Gaps = 2/331 (0%)

Query: 77  PDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGG 136
           P+ + +S     I T   RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGG
Sbjct: 39  PEADSISGPPDIINTN--RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGG 96

Query: 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196
           SFGTAMAAHVA +K  L+V ML+RD  VCQSINE H NC+YFPE KLPENVIATTDAK A
Sbjct: 97  SFGTAMAAHVARRKEGLEVNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAA 156

Query: 197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR 256
           LL ADYCLHA+PVQFSSSFLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPR
Sbjct: 157 LLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPR 216

Query: 257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAG 316
           QPF+ALSGPSFALELMN LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAG
Sbjct: 217 QPFVALSGPSFALELMNNLPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAG 276

Query: 317 ALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLT 376
           ALKNVLAIAAGIV GMNLGNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLT
Sbjct: 277 ALKNVLAIAAGIVDGMNLGNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLT 336

Query: 377 CFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           CFVNLSRNRTVGVRLGSGE LDDIL+SMNQV
Sbjct: 337 CFVNLSRNRTVGVRLGSGETLDDILTSMNQV 367

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. Required for activation of systemic acquired resistance (SAR). Provision of glycerol-3-phosphate may be involved in generating lipid signals necessary for mediating defense responses and SAR.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8

>sp|Q8H2J9|GPDA_ORYSJ Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0229800 PE=2 SV=3

 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/313 (78%), Positives = 279/313 (89%)

Query: 95  RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
           ++RR++V+ AWEKLVRWSR+WR + ++D++E T KVVVLGGGSFGTAMAA VA KK+ L+
Sbjct: 75  KERRRVVRKAWEKLVRWSRSWRRRNRSDVVETTRKVVVLGGGSFGTAMAAQVAAKKADLE 134

Query: 155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
           V ML+RD  VC+SIN  H NC+Y  + +LPEN+ ATT A  AL GAD+C HA+PVQFSSS
Sbjct: 135 VSMLLRDDLVCRSINHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSS 194

Query: 215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
           FLEGIS +VDP LPFISLSKGLELNTLR MSQIIPQAL NPRQPFI LSGPSFA+ELMNK
Sbjct: 195 FLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNK 254

Query: 275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
           LPTAMVVASKD+KLA AVQQLLAS +LRISTS+DVTGVEIAGALKNVLAIAAGIV GM+L
Sbjct: 255 LPTAMVVASKDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHL 314

Query: 335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
           GNN MAALVAQGCSEIRWLATKMGAKP T++GLSG+GDIMLTCFVNLSRNR VG+RLGSG
Sbjct: 315 GNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRNVGLRLGSG 374

Query: 395 EKLDDILSSMNQV 407
           EKLD+I++SMNQV
Sbjct: 375 EKLDEIMNSMNQV 387

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|B0SKD9|GPDA_LEPBP Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gpsA PE=3 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 174/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ ++G GSFGTA+ + +A+K   + ++   R     +SINE H N ++ P+  LP+ + 
Sbjct: 2   KIGIIGAGSFGTALGSILADKGYDVTLWT--RSEEQARSINENHMNSKHMPDLVLPDRLK 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+TD    +   D  + A P    S  L+ I D++ P +P +S SKG+E  +LR++S+I 
Sbjct: 60  ASTDLIQVVKDKDMIVSAPPSHALSGILKEIKDHIPPKVPIVSASKGIENESLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L       ++ LSGPSFA E++ ++PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPGQFHSQLSYLSGPSFAKEMVKRVPTIVSIASKNEATAKRVQEIFSFTYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ GALKNV+AIAAG+  G+  G N+ AAL+ +G +EI  +  KMGA P T  G 
Sbjct: 180 DVVGVEVGGALKNVIAIAAGVADGLGFGQNTRAALITRGLNEITRMGIKMGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L +ILSSMN+V
Sbjct: 240 SGMGDLVLTCCGEASRNRTVGFRLGKGESLKEILSSMNEV 279

Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) (taxid: 456481)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|B0SAV3|GPDA_LEPBA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gpsA PE=3 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 174/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ ++G GSFGTA+ + +A+K   + ++   R     +SINE H N ++ P+  LP+ + 
Sbjct: 2   KIGIIGAGSFGTALGSILADKGYDVTLWT--RSEEQARSINENHMNSKHMPDLVLPDRLK 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+TD    +   D  + A P    S  L+ I D++ P +P +S SKG+E  +LR++S+I 
Sbjct: 60  ASTDLIQVVKDKDMIVSAPPSHALSGILKEIKDHIPPKVPIVSASKGIENESLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L       ++ LSGPSFA E++ ++PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPGQFHSQLSYLSGPSFAKEMVKRVPTIVSIASKNEATAKRVQEIFSFTYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ GALKNV+AIAAG+  G+  G N+ AAL+ +G +EI  +  KMGA P T  G 
Sbjct: 180 DVVGVEVGGALKNVIAIAAGVADGLGFGQNTRAALITRGLNEITRMGIKMGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L +ILSSMN+V
Sbjct: 240 SGMGDLVLTCCGEASRNRTVGFRLGKGESLKEILSSMNEV 279

Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) (taxid: 355278)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q8EZB6|GPDA_LEPIN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=gpsA PE=3 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 174/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  +  V +  R+ +  +SIN  H N ++ P   LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYE--VILWCRNDSQVESINRNHINNKHLPNFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +  + G D  + + P    S  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L+ ILSSMN+V
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEV 279

Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|P61742|GPDA_LEPIC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=gpsA PE=3 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/280 (41%), Positives = 175/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P   LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQVESINRNHINNKHLPNFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +  + G D  + + P    S  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L+ ILSSMN+V
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEV 279

Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q04VF9|GPDA_LEPBJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gpsA PE=3 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 175/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P+  LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +T + G D  + + P    +  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +AS+    A  VQ++ +  + R   + 
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L+ ILS MN+V
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSGMNEV 279

Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q04Y15|GPDA_LEPBL Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gpsA PE=3 SV=1

 Score =  221 bits (562), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 175/280 (62%), Gaps = 3/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P+  LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +T + G D  + + P    +  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +AS+    A  VQ++ +  + R   + 
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           SG GD++LTC    SRNRTVG RLG GE L+ ILS MN+V
Sbjct: 240 SGMGDLILTCCGGQSRNRTVGFRLGKGETLEQILSGMNEV 279

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|A1V9Y4|GPDA_DESVV Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gpsA PE=3 SV=1

 Score =  219 bits (559), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 175/279 (62%), Gaps = 2/279 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLGGGS+GTA+A  +A K   +++++  RDPAV + +N  H N RY     L E + 
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT DA  AL GAD  L  +P Q + S L  +   +  G+  +S SKG+E + LR + +++
Sbjct: 60  ATCDAGEALEGADILLSVVPCQQTRSVLRSLRPRLKSGMVVVSASKGIETDGLRTVGEMV 119

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L      +  +SGPSFA E++  +PTA+V+   DR L   ++++ ++   R  + +D
Sbjct: 120 EEELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GA+KNV+AIAAG+  G+  G+N+ A L+ +G +E+  L   +GA+ +T  GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARASTFMGLS 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           G GD++LTC  +LSRNR VG+RL +G+ LD I++ M  V
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAAGQGLDAIVAGMGMV 278

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) (taxid: 391774)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|P61739|GPDA_DESVH Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpsA PE=3 SV=1

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 173/279 (62%), Gaps = 2/279 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLGGGS+GTA+A  +A K   +++++  RDPAV + +N  H N RY     L E + 
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT DA  AL GAD  L  +P Q + + L  +   +  G+  +S SKG+E + LR + +++
Sbjct: 60  ATCDAGEALEGADILLSVVPCQQTRTVLRSLRPRLKTGMVVVSASKGIETDGLRTVGEMV 119

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              L      +  +SGPSFA E++  +PTA+V+   DR L   ++++ ++   R  + +D
Sbjct: 120 EDELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GA+KNV+AIAAG+  G+  G+N+ A L+ +G +E+  L   +GA+ +T  GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARGSTFMGLS 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           G GD++LTC  +LSRNR VG+RL  G+ LD I++ M  V
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAEGQGLDAIVAGMGMV 278

Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2064849	420	GLY1 [Arabidopsis thaliana (ta	0.745	0.745	0.875	1.8e-142
TIGR_CMR|GSU_0006	335	GSU_0006 "glycerol-3-phosphate	0.664	0.832	0.400	1.4e-48
TIGR_CMR|CHY_1917	336	CHY_1917 "glycerol-3-phosphate	0.661	0.827	0.389	3.3e-47
UNIPROTKB|P95113	334	gpsA "Glycerol-3-phosphate deh	0.630	0.793	0.408	1.9e-44
TIGR_CMR|BA_1526	340	BA_1526 "glycerol-3-phosphate	0.661	0.817	0.359	1.3e-43
TIGR_CMR|ECH_0340	326	ECH_0340 "glycerol-3-phosphate	0.678	0.874	0.345	1.1e-41
UNIPROTKB|P0A6S7	339	gpsA [Escherichia coli K-12 (t	0.669	0.828	0.347	1.4e-41
TIGR_CMR|DET_1397	359	DET_1397 "glycerol-3-phosphate	0.659	0.771	0.349	1.4e-41
UNIPROTKB|Q97NF1	338	gpsA "Glycerol-3-phosphate deh	0.659	0.819	0.360	1.7e-41
TIGR_CMR|CPS_4387	334	CPS_4387 "glycerol-3-phosphate	0.659	0.829	0.330	4.3e-38

TAIR|locus:2064849 GLY1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 274/313 (87%), Positives = 294/313 (93%)

Query:    95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
             RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGGSFGTAMAAHVA +K  L+
Sbjct:    55 RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGGSFGTAMAAHVARRKEGLE 114

Query:   155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
             V ML+RD  VCQSINE H NC+YFPE KLPENVIATTDAK ALL ADYCLHA+PVQFSSS
Sbjct:   115 VNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSS 174

Query:   215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
             FLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPRQPF+ALSGPSFALELMN 
Sbjct:   175 FLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPRQPFVALSGPSFALELMNN 234

Query:   275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
             LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAGALKNVLAIAAGIV GMNL
Sbjct:   235 LPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAGALKNVLAIAAGIVDGMNL 294

Query:   335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
             GNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG
Sbjct:   295 GNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 354

Query:   395 EKLDDILSSMNQV 407
             E LDDIL+SMNQV
Sbjct:   355 ETLDDILTSMNQV 367

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA;ISS

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0046486 "glycerolipid metabolic process" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0048653 "anther development" evidence=RCA

GO:0045017 "glycerolipid biosynthetic process" evidence=IMP

TIGR_CMR|GSU_0006 GSU_0006 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 113/282 (40%), Positives = 168/282 (59%)

Query:   127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
             + ++ V+G GS+GT +A  +A K   L V +   +  + + +     N  + P  +L   
Sbjct:     2 SERIGVIGAGSWGTTLANLLARKG--LDVTLWAYEAELVEEMRATRVNSLFLPGIELAPA 59

Query:   187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
             +  T   + A  G D+ +   P Q     L  ++  + PG+  ++ SKG+EL+TL  M Q
Sbjct:    60 LSFTNSLEEAATGKDFLVLVSPSQVMRGVLAQLAPLLRPGVVLVNASKGIELDTLMTMDQ 119

Query:   247 IIPQALR-NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
             +    L     + F  LSGPSFA E+  ++PTA+V AS D  +A AVQ+L  +   R+ T
Sbjct:   120 VCAAVLPPEVARCFSVLSGPSFAREVSLEMPTAVVAASGDPAVAAAVQRLFTTPSFRVYT 179

Query:   306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365
             ++DV GVEI GALKNV+A+AAGI  G+ LG+N+ AAL+ +G +E+  L   MGA+P T  
Sbjct:   180 NTDVVGVEIGGALKNVIAVAAGISDGLGLGHNTRAALITRGLAEMTRLGLSMGAQPETFA 239

Query:   366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
             GL+G GD++LTC  +LSRNRTVG++LG G KL D+L  M  V
Sbjct:   240 GLAGMGDLVLTCTGDLSRNRTVGMKLGQGMKLADVLGEMRMV 281

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1917 CHY_1917 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 109/280 (38%), Positives = 166/280 (59%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             KV VLG GS+GTA++  +A K   +   +  RD AV + IN +  N RY P  K+ + +I
Sbjct:     5 KVTVLGAGSWGTALSNLLAQKG--VNTVLWGRDSAVIEEINRERENKRYLPGVKISQELI 62

Query:   189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
             AT D + AL  A++ + A+P Q     L+ I  Y  P    ++ +KG+E  +L  MS + 
Sbjct:    63 ATADLEFALKDANFLVAAVPSQAFRDLLQKIKPYFKPEQILVNTAKGIEEGSLLRMSAVF 122

Query:   249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              + L   R  +  LSGPS A E+   +PTA+VV+    +    VQ+L ++++ R+ T+ D
Sbjct:   123 TEVLPEYRDNYTILSGPSHAEEVGRGIPTAIVVSGYSPEKLYKVQELFSTEYFRVYTNDD 182

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             +TGVE+ G+LKN++AIA+GI  G+ LG+N+ AALV +G  EI  L  K+GAK  T  GLS
Sbjct:   183 LTGVELGGSLKNIIAIASGICTGLGLGDNTRAALVTRGLIEITRLGIKLGAKKETFMGLS 242

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
             G GD+ +T     SRN   G+ +G G+ L++    +N V+
Sbjct:   243 GLGDLFVTAGSRHSRNYKAGILIGEGKSLEETQKEINMVV 282

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 110/269 (40%), Positives = 158/269 (58%)

Query:   130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
             V V+G G++GTA+A  +A+   ++ ++   R   V   IN    N  Y P   LP ++ A
Sbjct:     8 VAVMGAGAWGTALAKVLADAGGEVTLWA--RRAEVADQINTTRYNPDYLPGALLPPSIHA 65

Query:   190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
             T DA+ AL GA   L  +P Q   + LE  +  +  G   +SL+KG+EL TL  MSQ+I 
Sbjct:    66 TADAEEALGGASTVLLGVPAQTMRANLERWAPLLPEGATLVSLAKGIELGTLMRMSQVII 125

Query:   250 QALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              ++     P +A +SGP+ A E+    P A VVA  D   A A+Q+ L S + R  T++D
Sbjct:   126 -SVTGAEPPQVAVISGPNLASEIAECQPAATVVACSDSGRAVALQRALNSGYFRPYTNAD 184

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             V G EI GA KN++A+A G+ VG+ LG N+ AA++ +G +EI  L T +GA  AT+ GL+
Sbjct:   185 VVGTEIGGACKNIIALACGMAVGIGLGENTAAAIITRGLAEIIRLGTALGANGATLAGLA 244

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKL 397
             G GD++ TC    SRNR+ G RLG GE L
Sbjct:   245 GVGDLVATCTSPRSRNRSFGERLGRGETL 273

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|BA_1526 BA_1526 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 101/281 (35%), Positives = 161/281 (57%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             K+ V+G GS+GTA+A  +A+    ++++    +  +   IN KH N RY P   LP  ++
Sbjct:     3 KITVVGAGSWGTALAMVLADNGHDVRIWGNRSE--LMDEINTKHENSRYLPGITLPSTIV 60

Query:   189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
             A +  + AL+  +  L  +P +     L+ +  YV     +I  SKG+E  T + +S++I
Sbjct:    61 AYSSLEEALVDVNVVLIVVPTKAYREVLQDMKKYVAGPTTWIHASKGIEPGTSKRISEVI 120

Query:   249 PQALRNPR-QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              + +     +  + LSGPS A E+  +  T +  A+K  + A  VQ L  + + R+ T+ 
Sbjct:   121 EEEIPEDLIKDVVVLSGPSHAEEVGLRQATTVTSAAKRMEAAEEVQDLFMNSYFRVYTNP 180

Query:   308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
             D+ GVE+ GALKN++A+AAGI  G+ LG+N+ AAL+ +G +EI  L  KMG  P T  GL
Sbjct:   181 DIVGVELGGALKNIIALAAGITDGLGLGDNAKAALMTRGLTEIARLGRKMGGNPLTFAGL 240

Query:   368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
             +G GD+++TC    SRN   G  LG G  L+++L SM  V+
Sbjct:   241 TGMGDLIVTCTSVHSRNWRAGNMLGKGHSLEEVLESMGMVV 281

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

TIGR_CMR|ECH_0340 ECH_0340 "glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 102/295 (34%), Positives = 169/295 (57%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             K  +LG GSFGTA+A  +++  + + ++   R+    QSI     N +Y P  KLPEN+I
Sbjct:     2 KTTILGAGSFGTAIAFALSSNSTSVNLWG--RNHTDMQSIAINRKNLKYLPTCKLPENII 59

Query:   189 ATTDAKTALLGADYCLH-AMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTLRMMS 245
              +++    L     C+  A+P Q   +    I D  ++    P +  SKG+E  +L+  S
Sbjct:    60 VSSNIDEVLSDYSTCIILAVPTQQLRTLCLSIQDKQHIFEKTPLLICSKGIENISLKFPS 119

Query:   246 QIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
             +I+ + L  P  P   LSGPSFA E+   LP  +V+A ++  L  ++ Q +++K  +I  
Sbjct:   120 EIVKEIL--PNNPAFILSGPSFAKEIAEDLPCTIVLAGENESLGTSIAQKISNKTFKIIY 177

Query:   306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL--ATKMGAKPAT 363
             S D+ GV+I  ALKN++AIA GIV G NLGNN++A ++ +G  EI+ L  A       +T
Sbjct:   178 SQDILGVQIGAALKNIIAIACGIVTGKNLGNNAIATVITKGMEEIKTLYAAKNQNINLST 237

Query:   364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPS-MQPLL 417
             + G S  GD++LTC    SRN + G+ +G G  ++ +L++ ++++   S ++PL+
Sbjct:   238 LIGPSCLGDLILTCTTAHSRNMSFGITIGQGADINKMLNNNSKIIEGVSTVKPLI 292

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

GO:0047952 "glycerol-3-phosphate dehydrogenase [NAD(P)+

UNIPROTKB|P0A6S7 gpsA [Escherichia coli K-12 (taxid:83333)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 99/285 (34%), Positives = 155/285 (54%)

Query:   125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
             +R   + V+G GS+GTA+A  +A    +  V +   DP    ++    CN  + P+   P
Sbjct:     3 QRNASMTVIGAGSYGTALAITLARNGHE--VVLWGHDPEHIATLERDRCNAAFLPDVPFP 60

Query:   185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
             + +   +D  TAL  +   L  +P       L  I   + P    +  +KGLE  T R++
Sbjct:    61 DTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLL 120

Query:   245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL-ASKHLRI 303
               +  +AL + + P   +SGP+FA EL   LPTA+ +AS D+  A+ +QQLL   K  R+
Sbjct:   121 QDVAREALGD-QIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRV 179

Query:   304 STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363
              ++ D  GV++ GA+KNV+AI AG+  G+  G N+  AL+ +G +E+  L   +GA PAT
Sbjct:   180 YSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPAT 239

Query:   364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
               G++G GD++LTC  N SRNR  G+ LG G  +      + QV+
Sbjct:   240 FMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVV 284

GO:0046474 "glycerophospholipid biosynthetic process" evidence=IMP

GO:0047952 "glycerol-3-phosphate dehydrogenase [NAD(P)+

GO:0051287 "NAD binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|DET_1397 DET_1397 "glycerol-3-phosphate dehydrogenase, NAD-dependent" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 99/283 (34%), Positives = 159/283 (56%)

Query:   128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPEN 186
             +KV ++G  ++G  +   +A+K  ++ ++    D A   S   +  +  + PE    PE 
Sbjct:     2 SKVCIIGTTTWGITLGTVIAHKGREVMLWARTEDEAALLSAQRRPAD--FLPEDYYFPEY 59

Query:   187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
             +  T   + AL GAD  L A+P Q     +   +  +   +   S SKGLE+ T + MSQ
Sbjct:    60 LNVTASLEEALSGADMVLMAVPSQRMRPNIRLAAPLLTKNMLVCSASKGLEIGTAKRMSQ 119

Query:   247 IIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
             +I   + +P   Q    LSGP+ A+E++  LP   V+A+   K A    +L+ + +    
Sbjct:   120 VIADEI-SPDFSQNICVLSGPNLAMEILKGLPAVTVLAADTEKTAKKAAKLVTASNFCAY 178

Query:   305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
             T++D+ GVE+ G+LKN++A+ AGI  G++ GNN+ +AL+ +G +EI  L   +GA P T 
Sbjct:   179 TNTDIIGVELGGSLKNIIALGAGIADGLSFGNNAKSALITRGLTEISALGAALGANPLTF 238

Query:   365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
             +GL+G GD++ TC  NLSRN  VGV L  G  L+DI+ SM+ V
Sbjct:   239 SGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYSMSNV 281

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISS

UNIPROTKB|Q97NF1 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 101/280 (36%), Positives = 163/280 (58%)

Query:   130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
             V VLG GS+GTA++  + +   +++++  +  P     IN  H N  YF +  L EN+IA
Sbjct:     6 VAVLGPGSWGTALSQVLNDNGHEVRIWGNL--PEQINEINTHHTNKHYFKDVVLDENIIA 63

Query:   190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
              TD    L   D  L  +P + +    + ++  +D  +  +  SKGLE ++ + +S I+ 
Sbjct:    64 YTDLAETLKDVDAILFVVPTKVTRLVAQQVAQTLDHKVIIMHASKGLEPDSHKRLSTILE 123

Query:   250 QAL-RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
             + +  + R   + +SGPS A E + +  T +  ASKD + A  VQ+L ++ + R+ T++D
Sbjct:   124 EEIPEHLRSDIVVVSGPSHAEETIVRDLTLITAASKDLQTAQYVQKLFSNHYFRLYTNTD 183

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             V GVE AGALKN++A+ AG + G+  G+N+ AA++A+G +EI  L   +GA P T +GLS
Sbjct:   184 VIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGASPLTYSGLS 243

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
             G GD+++T     SRN   G  LG GE L DI ++M  V+
Sbjct:   244 GVGDLIVTGTSIHSRNWRAGDALGRGESLADIEANMGMVI 283

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CPS_4387 CPS_4387 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 93/281 (33%), Positives = 157/281 (55%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             K+ VLG GS+GTA+A  +A  ++  K  +  RD     ++ +   N +Y  +   PEN+ 
Sbjct:     6 KITVLGAGSYGTALAICLA--RNGHKTLLWGRDDNHVAAMEQDRENNKYLADCPFPENLA 63

Query:   189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
                D + A+  +D  L  +P    +  L+ I   +         +KGL+  T  ++ Q +
Sbjct:    64 LEADLEKAVQASDNLLVVVPSHAFADMLKQIKPMLTENAKIAWATKGLDPQTGDLL-QNV 122

Query:   249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL-ASKHLRISTSS 307
              + +   R     LSGP+FA E+ + LPTA+ ++S+D +    +  LL   K  R+ ++ 
Sbjct:   123 ARTVLGDRVSLAVLSGPTFAKEMASGLPTAISLSSEDDEFVAELSDLLHCEKRFRVYSNK 182

Query:   308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
             D  GV++ GA+KNV+AIAAGI  G+  G N+  AL+ +G +E+  L   + A+PAT  G+
Sbjct:   183 DFIGVQLGGAVKNVIAIAAGIADGIGFGANARTALITRGLAEMTRLGLALNAEPATFMGM 242

Query:   368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
             +G GD++LTC  N SRNR  G+ LG G++++  ++ + QV+
Sbjct:   243 AGLGDLVLTCTDNQSRNRRFGLALGQGKEVEQAITDIGQVV 283

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H2J9	GPDA_ORYSJ	1, ., 1, ., 1, ., 8	0.7827	0.7452	0.7113	yes	no
Q949Q0	GPDA2_ARATH	1, ., 1, ., 1, ., 8	0.8398	0.7833	0.7833	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691
4th Layer	1.1.1.94	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIII.3227.1	hypothetical protein (366 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.27090001	Predicted protein (198 aa)	•					•	•		0.939
	eugene3.32010002	annotation not avaliable (118 aa)	•			•			•		0.839
	gw1.IX.3521.1	hypothetical protein; GTPase of unknown physiological role (By similarity) (489 aa)	•								0.795
	estExt_fgenesh4_pg.C_LG_X2045	glycerol-3-phosphate dehydrogenase (EC-1.1.5.3) (631 aa)	•					•	•		0.728
	fgenesh4_pg.C_LG_II002417	pantoate-beta-alanine ligase (EC-6.3.2.1) (319 aa)	•						•		0.687
	gw1.XII.1858.1	anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)	•						•		0.674
	fgenesh4_pm.C_scaffold_44000008	glycerol kinase (EC-2.7.1.30) (519 aa)	•						•		0.675
	fgenesh4_pg.C_scaffold_9318000001	Predicted protein (226 aa)	•								0.564
	estExt_Genewise1_v1.C_LG_VIII2938	hypothetical protein (232 aa)							•		0.564
	gw1.XIV.733.1	hypothetical protein (395 aa)	•								0.561

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
PRK00094	325	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp	1e-119
COG0240	329	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase	1e-107
PRK12439	341	PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p	1e-72
PRK14618	328	PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p	5e-53
PRK14620	326	PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p	3e-51
TIGR03376	342	TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh	2e-48
PRK14619	308	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p	6e-48
pfam01210	157	pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-	6e-46
pfam07479	145	pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-	6e-36
PTZ00345	365	PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge	1e-31

>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

 Score =  348 bits (897), Expect = e-119
 Identities = 123/279 (44%), Positives = 172/279 (61%), Gaps = 3/279 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG GS+GTA+A  +A       V +  RDP     IN    N RY P  KLP+N+ 
Sbjct: 3   KIAVLGAGSWGTALAIVLARNGHD--VTLWARDPEQAAEINADRENPRYLPGIKLPDNLR 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD   AL  AD  L A+P Q     L+ +   + P  P +  +KG+E  T +++S+++
Sbjct: 61  ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVL 120

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L +   P   LSGPSFA E+   LPTA+V+AS D +LA  VQ+L  S + R+ T++D
Sbjct: 121 EEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GALKNV+AIAAGI  G+ LG+N+ AAL+ +G +EI  L   +GA P T  GL+
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLA 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           G GD++LTC   LSRNR  G+ LG G+ L++ L+ +  V
Sbjct: 240 GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMV 278

Length = 325

>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score =  319 bits (819), Expect = e-107
 Identities = 129/280 (46%), Positives = 172/280 (61%), Gaps = 4/280 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GS+GTA+A  +A    +  V +  RD  +   INE   N +Y P   LP N+ 
Sbjct: 3   KIAVIGAGSWGTALAKVLARNGHE--VRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD   AL GAD  + A+P Q     L  +   +      +S +KGLE  T R++S+II
Sbjct: 61  ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII 120

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P  P   LSGPSFA E+   LPTA+VVAS D++ A  VQ L +S + R+ TS+D
Sbjct: 121 EEEL--PDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTD 178

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEI GALKNV+AIAAGI  G+ LG+N+ AAL+ +G +E+  L   +GAKP T  GLS
Sbjct: 179 VIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLS 238

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
           G GD++LTC   LSRNR  G+ LG G  LD+ L  + QV+
Sbjct: 239 GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVV 278

Length = 329

>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  230 bits (589), Expect = 1e-72
 Identities = 112/285 (39%), Positives = 160/285 (56%), Gaps = 6/285 (2%)

Query: 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQK 182
            +R  KVVVLGGGS+GT +A+  A +   L     +R       IN+ H N RY   +  
Sbjct: 4   AKREPKVVVLGGGSWGTTVASICARRGPTL---QWVRSAETADDINDNHRNSRYLGNDVV 60

Query: 183 LPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLR 242
           L + + ATTD   A   AD  +  +P       L  ++  + P +P +SL KGLE  T  
Sbjct: 61  LSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNM 120

Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLR 302
            MSQII + L  P  P   L+GP+ A E+      A V+A  D+ LA  +  L  ++  R
Sbjct: 121 RMSQIIEEVL--PGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFR 178

Query: 303 ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362
           + T+ DV GVE+AGALKNV AIA G+   + +G N+ A ++A+   E+  L   MG  P 
Sbjct: 179 VYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPE 238

Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           T  GL+G GD+++TC    SRNR VG +LG+G+ +D+I++SMNQV
Sbjct: 239 TFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQV 283

Length = 341

>gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  179 bits (456), Expect = 5e-53
 Identities = 97/274 (35%), Positives = 145/274 (52%), Gaps = 11/274 (4%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
             +V VLG G++GTA+A   A+K   + V +  R P    ++  +  N  Y P   LP  
Sbjct: 4   GMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAE 61

Query: 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMM 244
           +  T D + AL GAD+ + A+P +     L G+       L ++S +KGL  +   L  +
Sbjct: 62  LYPTADPEEALAGADFAVVAVPSKALRETLAGLP----RALGYVSCAKGLAPDGGRLSEL 117

Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
           ++++       +     LSGP+ A E+   LP A VVAS +  LA  VQ   +    R+ 
Sbjct: 118 ARVLEFL---TQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVY 174

Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
           TS D  GVE+ GALKNV+A+AAG+V G+ LG+N+ AAL+ +G  E+      +GA+ AT 
Sbjct: 175 TSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLD 398
            GLSG GD++ T     SRNR  G  +  G   +
Sbjct: 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDRE 268

Length = 328

>gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  175 bits (444), Expect = 3e-51
 Identities = 103/284 (36%), Positives = 167/284 (58%), Gaps = 8/284 (2%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ +LG GSFGTA+A  +++KK    V +  R+    +SIN K  N +Y P   LP+N+ 
Sbjct: 2   KISILGAGSFGTAIAIALSSKKIS--VNLWGRNHTTFESINTKRKNLKYLPTCHLPDNIS 59

Query: 189 ATTDAKTALLGADYC-LHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQ 246
             +     L     C + A+P Q   +  + + D ++    P +  SKG+E ++L+  S+
Sbjct: 60  VKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSE 119

Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
           I+ + L  P  P   LSGPSFA E+  KLP ++V+A ++  L +++   L++++L+I  S
Sbjct: 120 IVNEIL--PNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYS 177

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR--WLATKMGAKPATI 364
            D+ GV+I  ALKN++AIA GIV+G NLGNN+ AA++ +G +EI+  + A        T+
Sbjct: 178 QDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTL 237

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
            G S  GD++LTC    SRN + G ++G+G  ++ ILS    V+
Sbjct: 238 IGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVI 281

Length = 326

>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+))

 Score =  167 bits (426), Expect = 2e-48
 Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 25/292 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQL------KVYMLMRDPAVCQS-----INEKHCNCRY 177
           +V V+G G++GTA+A  VA     L       V M + +  +        IN  H N +Y
Sbjct: 1   RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKY 60

Query: 178 FPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
            P  KLP N++A  D   A  GAD  +  +P QF     + +  +V P    IS  KGLE
Sbjct: 61  LPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120

Query: 238 LNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD----RKLANA 291
           ++   ++++S II + L     P   LSG + A E+  +  +   V  +D       A  
Sbjct: 121 VSKDGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARV 177

Query: 292 VQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351
           ++ L    + R++   DV GVEIAGALKNV+AIAAG V G+  G+N+ AA++ +G  E+ 
Sbjct: 178 LKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237

Query: 352 WLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDI 400
             A       +        G  D++ TC     RN  VG     +G+ L+++
Sbjct: 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEEL 287

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342

>gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  165 bits (420), Expect = 6e-48
 Identities = 78/177 (44%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 225 PGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284
           P    ++ +KGL+  T R  SQI   A   P  P + LSGP+ + E+   LP A VVAS+
Sbjct: 74  PETIIVTATKGLDPETTRTPSQIWQAAF--PNHPVVVLSGPNLSKEIQQGLPAATVVASR 131

Query: 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344
           D   A  VQQ+ +S+  R+ T+SD  G E+ G LKNV+AIAAG+  G+ LG N+ AALV 
Sbjct: 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVT 191

Query: 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDIL 401
           +   E+  + T +GA+  T  GLSG GD++ TC   LSRN  VG  L  G+ L+ IL
Sbjct: 192 RALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQIL 248

Length = 308

>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

 Score =  155 bits (394), Expect = 6e-46
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 4/161 (2%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG GS+GTA+A  +A    +  V +  RD  + + IN    N +Y P  KLP+N+ 
Sbjct: 1   KIAVLGAGSWGTALAKVLARNGHE--VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLR 58

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD + A+ GAD  + A+P Q     L+ +   + PG   +SL+KG+E  TL+++S+II
Sbjct: 59  ATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEII 118

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA 289
            + L  P  P   LSGPS A E+   LPTA VVAS+D++ A
Sbjct: 119 EEEL--PINPIAVLSGPSHAEEVALGLPTATVVASEDQQAA 157

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157

>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

 Score =  128 bits (325), Expect = 6e-36
 Identities = 49/102 (48%), Positives = 65/102 (63%)

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
            DV GVEI GALKNV+AIAAGI+ G+  G+N+ AAL+ +G  E+      +G  P T  G
Sbjct: 1   EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPETFFG 60

Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
           L+G GD++ TC   L RNR VG  LG G+ L++I   + QV 
Sbjct: 61  LAGLGDLITTCTSELGRNRRVGEALGKGKSLEEIEKELGQVA 102

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145

>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional

 Score =  123 bits (311), Expect = 1e-31
 Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 19/266 (7%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVY-----MLMRDPAV-----CQSINEKHCNCRYF 178
           KV V+G G++G+A++  V     +  ++     M + +  V        IN KH N +Y 
Sbjct: 13  KVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYL 72

Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI--SDYVDPGLPFISLSKGL 236
           P  KLP+N++A +D K A+  AD  +  +P QF  S L  I  ++ +      ISL+KG+
Sbjct: 73  PGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGI 132

Query: 237 ELNTLRMM--SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
            +   + +  S +I + L     P  ALSG + A ++  +  +   +  +D+  A   Q+
Sbjct: 133 IVENGKPVLCSDVIEEELG---IPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQR 189

Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L    + +I+   DV GVE+ GALKN++A+AAG   G+ LG N+ +A++  G  E++   
Sbjct: 190 LFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFG 249

Query: 355 TKMGAKPATITGL--SGTGDIMLTCF 378
                     T     G  D++ TC 
Sbjct: 250 KIFFPNVMDETFFESCGLADLITTCL 275

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	100.0
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	100.0
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	100.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	100.0
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	100.0
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.95
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.93
PF07479	149	NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate	99.91
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.89
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.87
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.86
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.86
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.86
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.85
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.85
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.84
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.84
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.84
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.83
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.82
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.82
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.81
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.8
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.8
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.8
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.79
PLN02858	1378	fructose-bisphosphate aldolase	99.78
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.77
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.77
PLN02858	1378	fructose-bisphosphate aldolase	99.76
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.76
PLN02688	266	pyrroline-5-carboxylate reductase	99.75
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.75
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.74
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.73
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.73
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.72
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.72
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.7
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.67
PRK07680	273	late competence protein ComER; Validated	99.67
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.67
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.66
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.65
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.63
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.62
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.6
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.59
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.59
PRK07417	279	arogenate dehydrogenase; Reviewed	99.58
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.57
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.56
PRK08507	275	prephenate dehydrogenase; Validated	99.56
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.56
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.55
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.54
PRK08655	437	prephenate dehydrogenase; Provisional	99.52
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.49
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.48
PRK06545	359	prephenate dehydrogenase; Validated	99.46
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.46
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.46
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.44
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	99.42
PLN02256	304	arogenate dehydrogenase	99.42
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.41
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.41
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.41
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.41
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.4
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.37
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.37
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.34
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.34
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.33
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.32
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.31
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.27
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.24
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.2
PLN02712	667	arogenate dehydrogenase	99.17
PLN02712	667	arogenate dehydrogenase	99.16
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.16
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.14
PRK08818	370	prephenate dehydrogenase; Provisional	99.1
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.08
PRK12480	330	D-lactate dehydrogenase; Provisional	99.01
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.99
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.96
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.96
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.94
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.93
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.93
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.91
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.9
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.9
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	98.89
PRK08605	332	D-lactate dehydrogenase; Validated	98.89
PRK13243	333	glyoxylate reductase; Reviewed	98.87
PRK07574	385	formate dehydrogenase; Provisional	98.85
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.84
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.84
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.84
PLN03139	386	formate dehydrogenase; Provisional	98.81
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.78
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.71
PRK06444	197	prephenate dehydrogenase; Provisional	98.71
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.69
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.67
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.62
PRK06436	303	glycerate dehydrogenase; Provisional	98.61
PLN02306	386	hydroxypyruvate reductase	98.6
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.6
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.59
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.56
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.55
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.53
PRK06223	307	malate dehydrogenase; Reviewed	98.52
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.52
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	98.51
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.51
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.51
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.5
PRK06932	314	glycerate dehydrogenase; Provisional	98.5
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.49
PRK06487	317	glycerate dehydrogenase; Provisional	98.47
PLN02928	347	oxidoreductase family protein	98.46
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.41
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.35
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.35
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.33
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.33
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.32
PTZ00117	319	malate dehydrogenase; Provisional	98.29
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.28
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.24
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.23
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.22
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.21
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.19
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.17
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.12
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.11
PRK06141	314	ornithine cyclodeaminase; Validated	98.09
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.09
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.05
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.03
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.02
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.98
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.97
PRK05225	487	ketol-acid reductoisomerase; Validated	97.96
PRK15076	431	alpha-galactosidase; Provisional	97.95
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.92
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.9
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.87
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.86
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	97.86
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.85
PLN02602	350	lactate dehydrogenase	97.82
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.81
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.8
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.8
PRK05442	326	malate dehydrogenase; Provisional	97.78
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.78
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.78
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.77
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.76
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.76
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.75
PLN00203	519	glutamyl-tRNA reductase	97.74
PRK08618	325	ornithine cyclodeaminase; Validated	97.74
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.74
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.73
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.71
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.68
PRK09496	453	trkA potassium transporter peripheral membrane com	97.64
PTZ00325	321	malate dehydrogenase; Provisional	97.63
PRK07340	304	ornithine cyclodeaminase; Validated	97.63
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.62
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.62
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.62
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.61
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.59
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.57
PRK08291	330	ectoine utilization protein EutC; Validated	97.57
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.57
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.56
PLN02494	477	adenosylhomocysteinase	97.55
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.53
PRK07589	346	ornithine cyclodeaminase; Validated	97.52
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.52
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK06823	315	ornithine cyclodeaminase; Validated	97.49
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.49
PRK06046	326	alanine dehydrogenase; Validated	97.48
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.46
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.43
PRK04148	134	hypothetical protein; Provisional	97.42
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.41
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.4
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.4
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.39
PRK05086	312	malate dehydrogenase; Provisional	97.39
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.39
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.39
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.38
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.37
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.35
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.34
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.33
PLN00106	323	malate dehydrogenase	97.32
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.32
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.3
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.29
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.29
PRK11579	346	putative oxidoreductase; Provisional	97.29
PRK06407	301	ornithine cyclodeaminase; Provisional	97.27
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.27
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.27
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	97.27
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.25
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.23
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.23
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.16
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.15
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.13
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.11
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.1
COG2910	211	Putative NADH-flavin reductase [General function p	97.1
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.1
PRK09496	453	trkA potassium transporter peripheral membrane com	97.08
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.05
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.05
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.03
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.01
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.98
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.95
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.91
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.9
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.87
PRK10669	558	putative cation:proton antiport protein; Provision	96.85
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.84
PRK06199	379	ornithine cyclodeaminase; Validated	96.81
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.76
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.76
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.73
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.72
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.72
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.67
CHL00194	317	ycf39 Ycf39; Provisional	96.67
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.66
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.64
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.63
PRK08328	231	hypothetical protein; Provisional	96.59
KOG1495	332	consensus Lactate dehydrogenase [Energy production	96.56
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.55
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.55
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.54
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.52
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.52
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.44
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.44
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.42
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.39
PRK06270	341	homoserine dehydrogenase; Provisional	96.35
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.35
PRK14982	340	acyl-ACP reductase; Provisional	96.33
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.33
PRK10206	344	putative oxidoreductase; Provisional	96.32
COG2344	211	AT-rich DNA-binding protein [General function pred	96.32
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.3
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.29
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.27
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.26
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.25
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.24
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
PRK06349	426	homoserine dehydrogenase; Provisional	96.24
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.2
PLN02383	344	aspartate semialdehyde dehydrogenase	96.15
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.15
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.07
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.07
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.02
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.01
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.0
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.98
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.96
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.91
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.87
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.83
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.82
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	95.82
PRK06153	393	hypothetical protein; Provisional	95.76
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.76
PRK08223	287	hypothetical protein; Validated	95.75
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.73
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.73
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.7
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.65
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.64
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.63
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.62
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.6
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.58
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.58
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.58
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.57
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.45
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.41
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.41
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.41
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.4
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.38
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.38
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.37
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.31
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.27
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.26
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.25
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.21
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.21
PRK06392	326	homoserine dehydrogenase; Provisional	95.19
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.18
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.18
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.15
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.12
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.1
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.08
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.04
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.02
PRK06847	375	hypothetical protein; Provisional	95.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.94
PRK08163	396	salicylate hydroxylase; Provisional	94.93
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	94.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.92
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.9
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.88
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.87
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.86
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	94.85
PRK06753	373	hypothetical protein; Provisional	94.79
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	94.68
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.56
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.56
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.54
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.52
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.51
PLN02427	386	UDP-apiose/xylose synthase	94.48
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.45
PRK07877	722	hypothetical protein; Provisional	94.43
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.42
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.42
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.41
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.38
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	94.38
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.38
PRK05868	372	hypothetical protein; Validated	94.37
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.37
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	94.36
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.35
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.31
PRK08374	336	homoserine dehydrogenase; Provisional	94.26
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.26
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.23
COG1832	140	Predicted CoA-binding protein [General function pr	94.19
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.17
PRK07236	386	hypothetical protein; Provisional	94.16
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.16
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.14
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	94.12
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.11
PRK07411	390	hypothetical protein; Validated	94.11
COG5495	289	Uncharacterized conserved protein [Function unknow	94.1
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.07
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.07
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	94.07
PRK09242	257	tropinone reductase; Provisional	94.05
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.04
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.03
PRK09186	256	flagellin modification protein A; Provisional	94.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.99
PLN02214	342	cinnamoyl-CoA reductase	93.99
PLN03209	576	translocon at the inner envelope of chloroplast su	93.98
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	93.98
PRK07588	391	hypothetical protein; Provisional	93.98
PRK07454	241	short chain dehydrogenase; Provisional	93.97
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.96
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.95
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.94
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.94
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.94
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.93
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.93
PTZ00188	506	adrenodoxin reductase; Provisional	93.93
PRK10538	248	malonic semialdehyde reductase; Provisional	93.93
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.88
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.85
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	93.84
PRK07538	413	hypothetical protein; Provisional	93.84
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.83
PRK08340	259	glucose-1-dehydrogenase; Provisional	93.83
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.81
PLN03075	296	nicotianamine synthase; Provisional	93.8
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.76
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.69
PRK07326	237	short chain dehydrogenase; Provisional	93.69
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.67
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	93.66
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	93.63
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.57
PRK06182	273	short chain dehydrogenase; Validated	93.55
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.54
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	93.5
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.47
PLN02650	351	dihydroflavonol-4-reductase	93.46
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.46
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.43
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	93.43
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	93.42
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.4
PRK12939	250	short chain dehydrogenase; Provisional	93.38
PRK05866	293	short chain dehydrogenase; Provisional	93.37
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.36
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.34
PRK05993	277	short chain dehydrogenase; Provisional	93.34
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.3
PRK01581	374	speE spermidine synthase; Validated	93.29
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.24
PRK07774	250	short chain dehydrogenase; Provisional	93.23
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.22
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.18
PRK05875	276	short chain dehydrogenase; Provisional	93.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.15
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.14
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	93.07
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.07
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.06
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	93.05
PRK11728	393	hydroxyglutarate oxidase; Provisional	93.03
PRK08013	400	oxidoreductase; Provisional	93.01
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.99
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	92.98
PRK06124	256	gluconate 5-dehydrogenase; Provisional	92.97
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.93
PRK06949	258	short chain dehydrogenase; Provisional	92.9
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.81
PRK07045	388	putative monooxygenase; Reviewed	92.79
PRK08251	248	short chain dehydrogenase; Provisional	92.79
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	92.74
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	92.73
PRK05854	313	short chain dehydrogenase; Provisional	92.72
PRK08017	256	oxidoreductase; Provisional	92.7
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.68
PRK06197	306	short chain dehydrogenase; Provisional	92.67
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	92.64
PRK06475	400	salicylate hydroxylase; Provisional	92.63
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	92.62
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.61
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	92.6
PRK05884	223	short chain dehydrogenase; Provisional	92.59
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.59
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.57
PRK07831	262	short chain dehydrogenase; Provisional	92.55
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.55
PLN02780	320	ketoreductase/ oxidoreductase	92.55
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	92.51
PRK06180	277	short chain dehydrogenase; Provisional	92.5
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.48
PRK13984	604	putative oxidoreductase; Provisional	92.46
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	92.43
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.42
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.39
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	92.38
PRK07062	265	short chain dehydrogenase; Provisional	92.37
PRK10637	457	cysG siroheme synthase; Provisional	92.36
PRK12828	239	short chain dehydrogenase; Provisional	92.35
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	92.32
PRK07102	243	short chain dehydrogenase; Provisional	92.31
PRK06194	287	hypothetical protein; Provisional	92.3
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.3
PRK07890	258	short chain dehydrogenase; Provisional	92.29

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.7e-62  Score=476.63  Aligned_cols=290  Identities=44%  Similarity=0.635  Sum_probs=282.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|+||+++|..|+++|  |+|++|.|+++.+++|++.+.|.+|+|+..+|.++.+++|++++++++|+|+++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a   78 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA   78 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence            479999999999999999999999  999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~  286 (420)
                      ||++.++++++++.++++++.++|+++||+++++.+++++++.+.++.  ..+++++||+++.|++++.|+.+++++.|.
T Consensus        79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~  156 (329)
T COG0240          79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQ  156 (329)
T ss_pred             CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence            999999999999999999999999999999999999999999999986  348999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                      +.+++++.+|.+.+|++|.++|+.|+|+++++||++|+++|+++|+.+|+|+++++++++++||.+++.++|.+++||++
T Consensus       157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g  236 (329)
T COG0240         157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG  236 (329)
T ss_pred             HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      ++|+|||++||++.+||||++|+.|+||++++|++++++|++||+.|++++++|
T Consensus       237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~l  290 (329)
T COG0240         237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYEL  290 (329)
T ss_pred             cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999975

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-56  Score=445.86  Aligned_cols=292  Identities=28%  Similarity=0.424  Sum_probs=273.8

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDA  193 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG-----~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~  193 (420)
                      +.+.|||+|||+|+||+++|..|+++|     ++|+|.+|.|+++     .++.|++.|.|.+|+|++++|+++.+++|+
T Consensus         8 ~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl   87 (365)
T PTZ00345          8 RCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL   87 (365)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence            334579999999999999999999986     2379999999986     489999999999999999999999999999


Q ss_pred             HHhccCCcEEEEccChhhHHHHHHHhhh--cCCCCCeEEEeccCCCcchh--hhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700          194 KTALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFAL  269 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~l~~vl~~i~~--~l~~~~iVVs~snGi~~~t~--~~~se~l~~~lg~~~~~~~vl~GP~~a~  269 (420)
                      +++++++|+||++||++.++++++++.+  +++++.++|+++||++.++.  .++++++.+.++.   ++.+++||+++.
T Consensus        88 ~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~  164 (365)
T PTZ00345         88 KEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVAN  164 (365)
T ss_pred             HHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHH
Confidence            9999999999999999999999999998  78778899999999998765  6799999998863   688999999999


Q ss_pred             HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 014700          270 ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (420)
Q Consensus       270 ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E  349 (420)
                      |++++.|+.+++++.|.+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++++|+|+++++++++++|
T Consensus       165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E  244 (365)
T PTZ00345        165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE  244 (365)
T ss_pred             HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC--CChhhhhhccccchhhhhhcccCCCCccccccccCC---CChHHHHHHc--CCcccccchhhhhhcC
Q 014700          350 IRWLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVLVNPSMQPLLGKL  420 (420)
Q Consensus       350 ~~~lA~a~G--i~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g---~~~~~~~~~~--~~~~eG~~t~~~~~~~  420 (420)
                      |.++++++|  .+++||++++|+|||++||++  ||||++|+.|++|   ++++++++++  ++++||+.|++.+|+|
T Consensus       245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l  320 (365)
T PTZ00345        245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEV  320 (365)
T ss_pred             HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHH
Confidence            999999997  499999999999999999998  9999999999987   5899999988  8999999999999875

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=100.00  E-value=1e-55  Score=441.85  Aligned_cols=287  Identities=33%  Similarity=0.460  Sum_probs=273.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700          129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG------~~~~V~l~~r-----~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      ||+|||+|+||+++|..|+++|      ++|+|++|.|     +++..+.+++.+.+.+|+|++.+|+++++++|+++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            6999999999999999999986      4489999999     6778889999999999999999999999999999999


Q ss_pred             cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc--hhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcC
Q 014700          198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL  275 (420)
Q Consensus       198 ~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~--t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~  275 (420)
                      +++|+||++||++.++++++++.+++++++++|+++||++.+  +..++++++.+.++.   ++.+++||+++.|++++.
T Consensus        81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~  157 (342)
T TIGR03376        81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK  157 (342)
T ss_pred             hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence            999999999999999999999999999889999999999988  888999999998853   688999999999999999


Q ss_pred             CeEEEEecCC----HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700          276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR  351 (420)
Q Consensus       276 ~t~i~ia~~d----~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~  351 (420)
                      |+.+++++.+    .+.++.++++|++.+|+++.++|+.|+|+++++||++|+++|+++++.+|+|+++++++++++||.
T Consensus       158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~  237 (342)
T TIGR03376       158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI  237 (342)
T ss_pred             CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999988    899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCChh--hhhhccccchhhhhhcccCCCCccccccccC-CCChHHHHHH--cCCcccccchhhhhhcC
Q 014700          352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       352 ~lA~a~Gi~~~--t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~-g~~~~~~~~~--~~~~~eG~~t~~~~~~~  420 (420)
                      ++++++|.+++  ||++++|+||+++||++  ||||++|+.|+| |+++++++++  +++++||+.|++.+++|
T Consensus       238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l  309 (342)
T TIGR03376       238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHEL  309 (342)
T ss_pred             HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHH
Confidence            99999999888  99999999999999998  999999999999 9999999999  89999999999999875

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-52  Score=421.96  Aligned_cols=290  Identities=38%  Similarity=0.578  Sum_probs=273.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+|||+|||+|+||+++|..|+++|   +|++|.|++++++.+++.|.+..|++ +..++.++.+++|++++++++|+||
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi   82 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV   82 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence            3689999999999999999999987   58899999999999999888888888 7778888889999988899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      ++||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++.  ..+.++.||+++.++..+.++.+++++.
T Consensus        83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~  160 (341)
T PRK12439         83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP  160 (341)
T ss_pred             EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence            99999999999999999999888999999999998888899999888764  3567899999999999999998889998


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~  364 (420)
                      +.+..+.++++|++.+|+++.++|+.|++|++++||++++++|+++++.+++|+.++++.++++||.++++++|++++||
T Consensus       161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~  240 (341)
T PRK12439        161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF  240 (341)
T ss_pred             CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       365 ~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      ++++|+||+++||++..||||++|+.|++|++++++++++++++||+.|++.+++|
T Consensus       241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~  296 (341)
T PRK12439        241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEF  296 (341)
T ss_pred             cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.4e-45  Score=363.73  Aligned_cols=289  Identities=37%  Similarity=0.569  Sum_probs=265.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIla  206 (420)
                      |||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.+.+.+++++..++.++.+++++++++ .++|+||++
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            68999999999999999999998  999999999999999998877777788888888888988988876 589999999


Q ss_pred             cChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700          207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d  285 (420)
                      ||+++++++++++.+ ++.+++.||+++||++.++...+.+.+.+.++.  .++.++.||+++.+++.+.++.+.+++.+
T Consensus        79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~  156 (326)
T PRK14620         79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN  156 (326)
T ss_pred             eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence            999999999999998 888888899999999887666777888888765  46778899999999888777778888888


Q ss_pred             HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCC--Chhh
Q 014700          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT  363 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi--~~~t  363 (420)
                      .+..++++++|+..+++++.++|+.+.+|+|++||+++++.|+..++.+++|...+++.++++|+.++++++|+  ++++
T Consensus       157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~  236 (326)
T PRK14620        157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT  236 (326)
T ss_pred             HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            88889999999999999999999999999999999999999999999999899999999999999999999998  8999


Q ss_pred             hhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       364 ~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      +++++|+||+++||++..+||+++|+.|++|..++++..+.++++||+.+++.++++
T Consensus       237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~  293 (326)
T PRK14620        237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISL  293 (326)
T ss_pred             hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHH
Confidence            999999999999999888999999999999999999999999999999999988764

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=100.00  E-value=4.6e-44  Score=346.12  Aligned_cols=290  Identities=36%  Similarity=0.537  Sum_probs=261.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA  193 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG-----~~~~V~l~~r~~~-------~~~~i~~~g~~~~~l~~~~l~~~i~a~td~  193 (420)
                      ...||+|||+|+||+++|+.+.++-     ++.+|.+|.+.++       ..+-||++|.|.+|+|++++|.++.+++|+
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            3579999999999999999998762     2358999986542       346678889999999999999999999999


Q ss_pred             HHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc----hhhhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700          194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~----t~~~~se~l~~~lg~~~~~~~vl~GP~~a~  269 (420)
                      .+++++||++|+.+|.+.+..++++|..+++++...||++||++..    ..+.++++|.+.+|.   ++.+++||+.|.
T Consensus       100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~  176 (372)
T KOG2711|consen  100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS  176 (372)
T ss_pred             HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence            9999999999999999999999999999999999999999999853    257899999999986   578999999999


Q ss_pred             HHhhcCCeEEEEecCCHHHHH-HHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 014700          270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (420)
Q Consensus       270 ev~~g~~t~i~ia~~d~e~~~-~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~  348 (420)
                      |+++...+...+++.++.... .+.++|++.+|++...+|+.++|++++|||++|+++|+.+|+.+++|+++++++.++.
T Consensus       177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~  256 (372)
T KOG2711|consen  177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL  256 (372)
T ss_pred             HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence            999998888888887655444 5999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-CC-ChhhhhhccccchhhhhhcccCCCCccccccccCC-CChHHHHHHc--CCcccccchhhhhhcC
Q 014700          349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVLVNPSMQPLLGKL  420 (420)
Q Consensus       349 E~~~lA~a~-Gi-~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g-~~~~~~~~~~--~~~~eG~~t~~~~~~~  420 (420)
                      ||..+++.+ .. .++++++.||++|+++||++  +||+.++..+.|+ +++++..+++  +|.+||+.|++.+|++
T Consensus       257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~  331 (372)
T KOG2711|consen  257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYEL  331 (372)
T ss_pred             HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHH
Confidence            999999886 44 89999999999999999987  8999999988766 8899888776  7899999999999975

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=7.3e-41  Score=334.37  Aligned_cols=286  Identities=35%  Similarity=0.519  Sum_probs=252.5

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++|||+|||+|+||++||..|+++|  |+|++|+|++++.+.+++.+.+..++++..++.++..+++++++++++|+||
T Consensus         2 ~~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi   79 (328)
T PRK14618          2 HHGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAV   79 (328)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEE
Confidence            45789999999999999999999998  9999999999999999887766667777777767778889988889999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t--~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +|+|+++++++++.+    +++.++|+++||+.+++  .+.+++.+.+...   ..+.++.||+++.++..+.++..+++
T Consensus        80 ~~v~~~~~~~v~~~l----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~  152 (328)
T PRK14618         80 VAVPSKALRETLAGL----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVA  152 (328)
T ss_pred             EECchHHHHHHHHhc----CcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEE
Confidence            999999988877554    46778999999998654  4466666655222   24568899999999988888777788


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +.+.+.+++++++|+..+++++.++|+.|++|++++||++++++|+..++++++|...+++.++++|+..+++++|++++
T Consensus       153 ~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~  232 (328)
T PRK14618        153 SPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEA  232 (328)
T ss_pred             eCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       363 t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      ++++++|.||++.||.+..+||+.+|.++.+|+++++.. ...+++||+.+++++++|
T Consensus       233 ~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~l  289 (328)
T PRK14618        233 TFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAW  289 (328)
T ss_pred             chhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHH
Confidence            999999999999999999999999999999999888763 347899999999998764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=8.5e-41  Score=331.29  Aligned_cols=263  Identities=35%  Similarity=0.543  Sum_probs=242.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .|||+|||+|+||++||..|+++|  |+|++|+|++.                           ++++++++++|+||++
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            479999999999999999999998  99999999752                           2567778899999999


Q ss_pred             cChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700          207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d  285 (420)
                      +|+.+++++++++.++ ++++++||+++||+++++...+++.+.+.+..  .++.+++||.++.++..+.++..++++.+
T Consensus        55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~  132 (308)
T PRK14619         55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD  132 (308)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence            9999999999998774 67889999999999998777888888777654  36677899999999888888888899999


Q ss_pred             HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhh
Q 014700          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT  365 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~  365 (420)
                      .+..++++++|+..+++++.++|+.|++|++++||++++++|+.+++++++|...+++.++++|+.++++++|+++++++
T Consensus       133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~  212 (308)
T PRK14619        133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY  212 (308)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       366 ~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      +++|+||+.+||.+..+|||++|+.+++|++++++.+++++++||+.+++.++++
T Consensus       213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~  267 (308)
T PRK14619        213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQL  267 (308)
T ss_pred             cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.4e-39  Score=319.83  Aligned_cols=291  Identities=43%  Similarity=0.650  Sum_probs=262.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.+....++++..++.++.++++++++++++|+||+|
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            579999999999999999999998  899999999999999988776666666666666777888888888899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~  286 (420)
                      ||+++++++++++.++++++++||+++||+.+++...+++.+.+.++.. ....++.||+++.+...+.++.+.+++.+.
T Consensus        79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~  157 (325)
T PRK00094         79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE  157 (325)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence            9999999999999998888999999999999877777888888876531 246788999999888777777777888888


Q ss_pred             HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                      +.+++++++|+..++++..++|+.+.+|+++++|++++++|..+++++++|...+++..+++|+..+|+++|++++++++
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~  237 (325)
T PRK00094        158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG  237 (325)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      +++.||++.+|.+..+||+.+|+.+++|.++++++++++++.||...+++++++
T Consensus       238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~  291 (325)
T PRK00094        238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYEL  291 (325)
T ss_pred             ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHH
Confidence            999999999999999999999999999999988888888999999999998763

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.95  E-value=3.7e-27  Score=211.73  Aligned_cols=156  Identities=42%  Similarity=0.605  Sum_probs=139.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      ||+|||+|+||+++|..|+++|  ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+||++||
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence            7999999999999999999999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHH
Q 014700          209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL  288 (420)
Q Consensus       209 ~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~  288 (420)
                      ++.++++++++.+++++++++|+++||++.++...+++++.+.++..  .+++++||++++|++.+.++.+++++.+.+.
T Consensus        79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~  156 (157)
T PF01210_consen   79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV  156 (157)
T ss_dssp             GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence            99999999999999999999999999998888889999999998863  4899999999999999999999999988764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.93  E-value=2.3e-24  Score=209.46  Aligned_cols=225  Identities=19%  Similarity=0.199  Sum_probs=180.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +||+|||+|.||.+||.+|.++|  |+|++|+|++++ .+.+.+.|              .....++.|+++++|+||+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~G--------------a~~a~s~~eaa~~aDvVitm   64 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAG--------------ATVAASPAEAAAEADVVITM   64 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcC--------------CcccCCHHHHHHhCCEEEEe
Confidence            58999999999999999999999  999999999988 55555544              34556788899999999999


Q ss_pred             cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |++ .++++++   +.+...+++++++|++++ +++++.+.+++.+++. |     ..++..|...........+..++.
T Consensus        65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmST-isp~~a~~~a~~~~~~-G-----~~~lDAPVsGg~~~A~~GtLtimv  137 (286)
T COG2084          65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMST-ISPETARELAAALAAK-G-----LEFLDAPVSGGVPGAAAGTLTIMV  137 (286)
T ss_pred             cCCHHHHHHHHhCccchhhcCCCCCEEEECCC-CCHHHHHHHHHHHHhc-C-----CcEEecCccCCchhhhhCceEEEe
Confidence            995 5699998   457888889999999985 8887766677666553 3     346666666655444445667788


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +++++.+++++++|+..+.++++..+. |                ..+.+|+.+|...+....++.|...++++.|++++
T Consensus       138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-G----------------~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~  200 (286)
T COG2084         138 GGDAEAFERAKPVLEAMGKNIVHVGPV-G----------------AGQAAKLANNILLAGNIAALAEALALAEKAGLDPD  200 (286)
T ss_pred             CCCHHHHHHHHHHHHHhcCceEEECCC-C----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            899999999999999999999988875 3                34455677888888999999999999999999999


Q ss_pred             hhhhcc-----ccchhhhhhcccCCCCcccccccc
Q 014700          363 TITGLS-----GTGDIMLTCFVNLSRNRTVGVRLG  392 (420)
Q Consensus       363 t~~~l~-----g~gdl~~t~~~~~sRn~~~G~~l~  392 (420)
                      .+++..     +..-+-..+..+..|||++||.+.
T Consensus       201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~  235 (286)
T COG2084         201 VVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVD  235 (286)
T ss_pred             HHHHHHhccccCChHHHhhcchhhcCCCCcchhHH
Confidence            999843     233344445567899999999764

>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1

Probab=99.91  E-value=3.3e-25  Score=197.01  Aligned_cols=114  Identities=44%  Similarity=0.724  Sum_probs=107.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh-hhhhccccchhhhhhcccCCCCc
Q 014700          307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR  385 (420)
Q Consensus       307 ~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~-t~~~l~g~gdl~~t~~~~~sRn~  385 (420)
                      +|++|+|+++++||++|+++|+++++++++|+++++++++++||.++++++|.+++ ||+++||+||+++||++..||||
T Consensus         1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~   80 (149)
T PF07479_consen    1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR   80 (149)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence            58999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             cccccccCC-CChHHHHHHc--CCcccccchhhhhhcC
Q 014700          386 TVGVRLGSG-EKLDDILSSM--NQVLVNPSMQPLLGKL  420 (420)
Q Consensus       386 ~~G~~l~~g-~~~~~~~~~~--~~~~eG~~t~~~~~~~  420 (420)
                      ++|+.+++| ++++++.+++  ++++||+.|++.+++|
T Consensus        81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l  118 (149)
T PF07479_consen   81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYEL  118 (149)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHH
Confidence            999999999 9999999998  9999999999999874

1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.89  E-value=4.2e-22  Score=191.18  Aligned_cols=226  Identities=17%  Similarity=0.174  Sum_probs=181.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|||||+|+||..|+.+|.++|  |.|++|+|+.++++.+.+.|.              ++..+|.|+.+++|+||.
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvit   97 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVIT   97 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEE
Confidence            4689999999999999999999999  999999999999999999764              455689999999999999


Q ss_pred             ccCh-hhHHHHHHHhhhc---CCCCCeE-EEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700          206 AMPV-QFSSSFLEGISDY---VDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       206 aVp~-~~l~~vl~~i~~~---l~~~~iV-Vs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      +||+ .+.++++..-...   ++++... |.++. +++++...+.+.+...      .+-++.+|...........+.++
T Consensus        98 mv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Lti  170 (327)
T KOG0409|consen   98 MVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTI  170 (327)
T ss_pred             EcCChHhhHHHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEE
Confidence            9995 5678877553333   3466655 77764 8887655444444332      34577888877654444556677


Q ss_pred             EecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      ++++|++.++++.++|+.+|..+++...+                 |..+.+|+.+|...+....+++|...+|.++|++
T Consensus       171 magGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd  233 (327)
T KOG0409|consen  171 MAGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLD  233 (327)
T ss_pred             EecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88899999999999999999887765442                 4556677888988899999999999999999999


Q ss_pred             hhhhhh-----ccccchhhhhhcccCCCCccccccc
Q 014700          361 PATITG-----LSGTGDIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       361 ~~t~~~-----l~g~gdl~~t~~~~~sRn~~~G~~l  391 (420)
                      ..++++     .|+..++...+..++.|+|..||.+
T Consensus       234 ~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~  269 (327)
T KOG0409|consen  234 AKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFAL  269 (327)
T ss_pred             HHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchH
Confidence            999987     3577788888888999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.87  E-value=4.9e-21  Score=188.47  Aligned_cols=220  Identities=19%  Similarity=0.241  Sum_probs=162.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|+||+++|..|+++|  ++|++++|+++..+.+++.|....   +......+..+++++++ +++|+||+|+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~-~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE---DGEITVPVLAADDPAEL-GPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc---CCceeecccCCCChhHc-CCCCEEEEec
Confidence            68999999999999999999998  999999998888888887665331   11111122344566664 8999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEEEE
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      |+.+++++++++.+++.+++.||+++||+...      +.+.+.++...      ...+...+|+...+...+   .+.+
T Consensus        75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g---~~~i  145 (304)
T PRK06522         75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGG---RLKI  145 (304)
T ss_pred             ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCC---CEEE
Confidence            99999999999999998889999999998754      23334333210      011235567665544332   2344


Q ss_pred             ecCC--HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHH
Q 014700          282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLAT  355 (420)
Q Consensus       282 a~~d--~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~lA~  355 (420)
                      +..+  .+..+.+.++|+..++.+..++|+.+.+|.|++.|......+...+...+    ++....++..++.|+.++++
T Consensus       146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~  225 (304)
T PRK06522        146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE  225 (304)
T ss_pred             eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            4332  24478899999999999999999999999999999866665555444433    34567899999999999999


Q ss_pred             HcCCChh
Q 014700          356 KMGAKPA  362 (420)
Q Consensus       356 a~Gi~~~  362 (420)
                      ++|+++.
T Consensus       226 a~G~~~~  232 (304)
T PRK06522        226 AEGVHLS  232 (304)
T ss_pred             HcCCCCC
Confidence            9998753

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.86  E-value=1.9e-20  Score=184.83  Aligned_cols=225  Identities=14%  Similarity=0.179  Sum_probs=162.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+||+|||+|.||.+||..|+++|  ++|++|+|+++.++.+.+.+.              ...++++++++++|+||+|
T Consensus         1 m~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~   64 (296)
T PRK15461          1 MAAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITM   64 (296)
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEe
Confidence            369999999999999999999998  999999999999888877542              3345778888999999999


Q ss_pred             cChh-hHHHHHH---HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~~-~l~~vl~---~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +|+. .+++++.   .+.+.+++++++|++++ +.+.+.+.+.+.+.+. |     +.++.+|...........+..++.
T Consensus        65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g-----~~~ldapV~g~~~~a~~g~l~~~~  137 (296)
T PRK15461         65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-G-----FSMMDVPVGRTSDNAITGTLLLLA  137 (296)
T ss_pred             cCCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEccCCCCHHHHHhCcEEEEE
Confidence            9986 4888874   35566778999999887 4555444555555443 2     235556554432211222444567


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +++++.+++++++|+..+.++++.+++                 |....+|+.+|........++.|+..++++.|++++
T Consensus       138 gg~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~  200 (296)
T PRK15461        138 GGTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFD  200 (296)
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            778899999999999998888877764                 223345566777777777888999999999999999


Q ss_pred             hhhhcc--cc---chhhhhhc-ccCCCCccccccc
Q 014700          363 TITGLS--GT---GDIMLTCF-VNLSRNRTVGVRL  391 (420)
Q Consensus       363 t~~~l~--g~---gdl~~t~~-~~~sRn~~~G~~l  391 (420)
                      .+++..  +.   ..+..... ...+++|..+|.+
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  235 (296)
T PRK15461        201 VALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMI  235 (296)
T ss_pred             HHHHHHhcCcccChHHHccccchhccCCCCCCcch
Confidence            988743  21   22221211 3456888888865

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.86  E-value=1.4e-20  Score=185.56  Aligned_cols=221  Identities=16%  Similarity=0.174  Sum_probs=159.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|||+|+||+++|..|+++|  ++|++|+| +++.+.+++.|....... ....+  ....++.+++.+++|+||+|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila   75 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA   75 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence            69999999999999999999998  99999999 778888887664332211 11111  23456677766899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-C-CeE----EEECcccHHHHhhcCCeEEE
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-Q-PFI----ALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-~-~~~----vl~GP~~a~ev~~g~~t~i~  280 (420)
                      +|+.+++++++++.+++.++++||+++||+...      +.+.+.++... . .+.    .+.+|+.....   ....+.
T Consensus        76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~---~~~~~~  146 (305)
T PRK12921         76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR---ADHRLT  146 (305)
T ss_pred             ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc---CCCcEE
Confidence            999999999999999888889999999999753      23344443211 0 011    12233332221   122244


Q ss_pred             Eec---CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHH
Q 014700          281 VAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWL  353 (420)
Q Consensus       281 ia~---~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~l  353 (420)
                      ++.   ...+..+.+.++|+..++.+....|+...+|.|++.|......+...+.+.+    ++....++..+++|+.++
T Consensus       147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v  226 (305)
T PRK12921        147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV  226 (305)
T ss_pred             EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence            443   2346678899999999999999999999999999999765555555444432    344568899999999999


Q ss_pred             HHHcCCChh
Q 014700          354 ATKMGAKPA  362 (420)
Q Consensus       354 A~a~Gi~~~  362 (420)
                      ++++|++..
T Consensus       227 ~~a~G~~~~  235 (305)
T PRK12921        227 ARAEGAPLR  235 (305)
T ss_pred             HHHcCCCCC
Confidence            999999743

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.86  E-value=2.6e-20  Score=186.76  Aligned_cols=224  Identities=20%  Similarity=0.290  Sum_probs=160.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~i~a~td~~eal~~aDiV  203 (420)
                      +|||+|||+|+||+++|..|+++|  |+|++|+|++ ..+.+++.+......++..   .+..+..++++ +++.++|+|
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            689999999999999999999998  9999999976 3567777665432222211   12345556666 457899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-----CCe-EEEECcccHHHHhhcCCe
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-----QPF-IALSGPSFALELMNKLPT  277 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-----~~~-~vl~GP~~a~ev~~g~~t  277 (420)
                      |+|||...+.++++.+.+.+.++++|++++||+...      +.+.+.++...     ..+ ++..||..+.....+.  
T Consensus        78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~--  149 (341)
T PRK08229         78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA--  149 (341)
T ss_pred             EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence            999999999999999999998999999999998753      23444443210     011 2355676654322222  


Q ss_pred             EEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHH
Q 014700          278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWL  353 (420)
Q Consensus       278 ~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~l----g~N~~~al~~~~~~E~~~l  353 (420)
                       +.++.  .+.++++.++|+..++++++++|+.+..|.|++.|.+ .+.....+..+    .+.....++..++.|+..+
T Consensus       150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v  225 (341)
T PRK08229        150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV  225 (341)
T ss_pred             -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence             23332  2456899999999999999999999999999999963 32222223222    2334567889999999999


Q ss_pred             HHHcCCChhhhhh
Q 014700          354 ATKMGAKPATITG  366 (420)
Q Consensus       354 A~a~Gi~~~t~~~  366 (420)
                      |++.|++++.+..
T Consensus       226 a~a~Gi~~~~~~~  238 (341)
T PRK08229        226 LKAAGIRPARLTP  238 (341)
T ss_pred             HHHcCCCccccCC
Confidence            9999999876543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.85  E-value=9e-20  Score=187.85  Aligned_cols=236  Identities=20%  Similarity=0.187  Sum_probs=174.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------C-CCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l-~~~i~a~td~~eal~~a  200 (420)
                      |||+|||+|.||.++|..|+++|  |+|++|++++++++.+++ +..+.+.++..      + ..++.++++++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a   77 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA   77 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence            68999999999999999999998  999999999999998875 44444444432      1 12367888888888999


Q ss_pred             cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHH-HHHHHHhCCC-CCCeEEEECcccH
Q 014700          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS-QIIPQALRNP-RQPFIALSGPSFA  268 (420)
Q Consensus       201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~s-e~l~~~lg~~-~~~~~vl~GP~~a  268 (420)
                      |+||+|||+.          ++.++++.+.+.++++++||..+ ++.+.+.+.+. +.+.+..|.. ...+.+.++|.++
T Consensus        78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~  156 (411)
T TIGR03026        78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL  156 (411)
T ss_pred             CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence            9999999965          47888888988888899888776 68777655554 3444322321 2356788999888


Q ss_pred             HHHhh----cCCeEEEEecCCHHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014700          269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV  343 (420)
Q Consensus       269 ~ev~~----g~~t~i~ia~~d~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~  343 (420)
                      .+...    ..+..++++ .+++..++++++|+..+ ..++...++...+..|++.                 |...+..
T Consensus       157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~-----------------N~~~a~~  218 (411)
T TIGR03026       157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAE-----------------NTFRAVK  218 (411)
T ss_pred             CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHH-----------------HHHHHHH
Confidence            65221    233344444 68889999999999876 4667778887777766554                 4455666


Q ss_pred             HHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCccccccc
Q 014700          344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       344 ~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l  391 (420)
                      ...++|+..+|+++|+|++++++..+.+..+      ..+.+.+|+.+
T Consensus       219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~  260 (411)
T TIGR03026       219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGV  260 (411)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCC
Confidence            7789999999999999999999887765322      24556666544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.85  E-value=2.8e-20  Score=184.95  Aligned_cols=221  Identities=15%  Similarity=0.189  Sum_probs=157.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..|||+|||+|+||+.+|..|+++|  ++|+++.|++.  +.+++.|..... .+..... .+.+.+++++ ...+|+||
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vi   77 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSDY--EAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVL   77 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCH--HHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEE
Confidence            3579999999999999999999998  99999999863  566666643221 1111121 2345555543 67899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC-C-----eEEEECcccHHHHhhcCCeE
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-P-----FIALSGPSFALELMNKLPTA  278 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~-~-----~~vl~GP~~a~ev~~g~~t~  278 (420)
                      +|||+.++.++++.+.+.+.++++|++++||++..      +.+.+.++.... .     .+...+|....+...+.   
T Consensus        78 lavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~---  148 (313)
T PRK06249         78 VGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGR---  148 (313)
T ss_pred             EEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCc---
Confidence            99999999999999999998899999999999864      344455443210 0     11233454433222221   


Q ss_pred             EEEe---cCC-----HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHH
Q 014700          279 MVVA---SKD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQG  346 (420)
Q Consensus       279 i~ia---~~d-----~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~  346 (420)
                      +.++   +.+     .+..+.+.++|+..++.+..++|+....|.|++.|...+..+...+...+    +.....++.+.
T Consensus       149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~  228 (313)
T PRK06249        149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL  228 (313)
T ss_pred             EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence            2333   222     46678899999999999999999999999999999755554444444333    22346789999


Q ss_pred             HHHHHHHHHHcCCCh
Q 014700          347 CSEIRWLATKMGAKP  361 (420)
Q Consensus       347 ~~E~~~lA~a~Gi~~  361 (420)
                      +.|+.+++++.|++.
T Consensus       229 ~~E~~~va~a~Gi~~  243 (313)
T PRK06249        229 MAEVIQGAAACGHTL  243 (313)
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999999999973

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.84  E-value=1.8e-20  Score=185.75  Aligned_cols=222  Identities=19%  Similarity=0.220  Sum_probs=163.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|+|+|+||+.+|..|+++|  ++|+++.|++. ++++++.|+......+ ..........+. +....+|+||++|
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDA-EALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccCh-hhcCCCCEEEEEe
Confidence            79999999999999999999998  89999999886 8999998875544333 111111222333 4467999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      |+++++++++.+.+++++++.|++++||+...      |.+.+.++..      ....++..||....+...|......+
T Consensus        76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~  149 (307)
T COG1893          76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL  149 (307)
T ss_pred             ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence            99999999999999999999999999999875      2344443321      11223445565554433222222222


Q ss_pred             ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHc
Q 014700          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM  357 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~lA~a~  357 (420)
                      .+.+++..+.+.++|+..++.+.+..|+....|.|++.|......+..-..+.+    +.....++.+.+.|...++.+.
T Consensus       150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~  229 (307)
T COG1893         150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE  229 (307)
T ss_pred             CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence            344557889999999999999999999999999999999765554444444333    2345688999999999999999


Q ss_pred             CCC
Q 014700          358 GAK  360 (420)
Q Consensus       358 Gi~  360 (420)
                      |+.
T Consensus       230 g~~  232 (307)
T COG1893         230 GVE  232 (307)
T ss_pred             cCC
Confidence            954

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.84  E-value=1.3e-19  Score=178.50  Aligned_cols=223  Identities=17%  Similarity=0.187  Sum_probs=159.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.+||..|.++|  ++|++|+|++. .+.+.+.|              +....++.++++.+|+||+||
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g--------------~~~~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLG--------------AVSVETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence            58999999999999999999998  89999999874 45555433              234457888889999999999


Q ss_pred             Chh-hHHHHHHH---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          208 PVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       208 p~~-~l~~vl~~---i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |.. ++++++..   +.+.+.++++||.+++ +.+++.+.+.+.+.+. |.     .++.+|...........+..++.+
T Consensus        64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g  136 (292)
T PRK15059         64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG  136 (292)
T ss_pred             CChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence            965 67887743   5555678999999875 7776656666666553 33     245555544333222334345567


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      ++++.+++++++|+..+.++++..+. |                ....+|+.+|........++.|...++++.|+++++
T Consensus       137 G~~~~~~~~~p~l~~~g~~~~~~G~~-G----------------~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~  199 (292)
T PRK15059        137 GDEAVFERVKPLFELLGKNITLVGGN-G----------------DGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR  199 (292)
T ss_pred             CCHHHHHHHHHHHHHHcCCcEEeCCc-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            78899999999999988877776664 2                233445667777777788999999999999999999


Q ss_pred             hhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700          364 ITGLS--GTGD---IMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       364 ~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l  391 (420)
                      +++..  +.+.   +.........++|..+|.+
T Consensus       200 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l  232 (292)
T PRK15059        200 VRQALMGGFASSRILEVHGERMIKRTFNPGFKI  232 (292)
T ss_pred             HHHHHHcCcccCHHHHhhchhhhcCCCCCCCch
Confidence            88742  2221   1112233557888888765

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.84  E-value=1.5e-19  Score=177.71  Aligned_cols=197  Identities=19%  Similarity=0.210  Sum_probs=153.3

Q ss_pred             EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-h
Q 014700          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q  210 (420)
Q Consensus       132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~  210 (420)
                      |||+|.||.+||..|.++|  |+|++|+|+++.++.+.+.|              +..+++++++++++|+||+|||+ .
T Consensus         1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advVil~vp~~~   64 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAG--------------AQAAASPAEAAEGADRVITMLPAGQ   64 (288)
T ss_pred             CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeCCChH
Confidence            6899999999999999998  89999999999988888754              23456788889999999999997 6


Q ss_pred             hHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHH
Q 014700          211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (420)
Q Consensus       211 ~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e  287 (420)
                      ++++++   +++.+.+++++++|+++ ++.+++.+.+.+.+.+. |     ..++.+|...........+..++.+++++
T Consensus        65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g-----~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~  137 (288)
T TIGR01692        65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-G-----AVFMDAPVSGGVGGARAGTLTFMVGGVAE  137 (288)
T ss_pred             HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CcEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence            688888   67888888899999988 68887766666666553 3     23566665544333233344556677888


Q ss_pred             HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700          288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL  367 (420)
Q Consensus       288 ~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l  367 (420)
                      .+++++++|+..+.++++..+.-.                 .+.+|+.+|........++.|+..++++.|++++.+++.
T Consensus       138 ~~~~~~~~l~~~g~~~~~~g~~g~-----------------g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~  200 (288)
T TIGR01692       138 EFAAAEPVLGPMGRNIVHCGDHGA-----------------GQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI  200 (288)
T ss_pred             HHHHHHHHHHHhcCCeEeeCCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            899999999998887777766422                 233456677777777789999999999999999999875


Q ss_pred             c
Q 014700          368 S  368 (420)
Q Consensus       368 ~  368 (420)
                      .
T Consensus       201 ~  201 (288)
T TIGR01692       201 A  201 (288)
T ss_pred             H
Confidence            3

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.83  E-value=4e-19  Score=174.75  Aligned_cols=223  Identities=17%  Similarity=0.218  Sum_probs=159.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      ||+|||+|.||..||..|+++|  ++|++|+|+++..+.+.+.|.              ...+++++++++||+||+|+|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence            6999999999999999999998  999999999998888876542              223467788899999999999


Q ss_pred             hh-hHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       209 ~~-~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      .. .++.++   +.+.+.++++++||++++ +.+.+.+.+.+.+.+. |     +.++.+|.+..+......+..++.++
T Consensus        65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~st-~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg  137 (291)
T TIGR01505        65 DSPQVEEVAFGENGIIEGAKPGKTLVDMSS-ISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG  137 (291)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence            64 576666   345667788999998775 4454434444444432 2     33566676654332222233445556


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~  364 (420)
                      +++.+++++++|+..+.++++..+.-..                 ..+|+.+|........+++|+..++++.|++++++
T Consensus       138 ~~~~~~~~~~ll~~lg~~~~~~g~~g~a-----------------~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~  200 (291)
T TIGR01505       138 DQAVFDRVKPLFEALGKNIVLVGGNGDG-----------------QTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV  200 (291)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEeCCCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            7889999999999998877766553221                 22345667777788889999999999999999999


Q ss_pred             hhcc-----ccchhhhhhcccCCCCccccccc
Q 014700          365 TGLS-----GTGDIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       365 ~~l~-----g~gdl~~t~~~~~sRn~~~G~~l  391 (420)
                      .+..     +...+...+....+++|..||.+
T Consensus       201 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~  232 (291)
T TIGR01505       201 RQALRGGLAGSTVLEVKGERVIDRTFKPGFRI  232 (291)
T ss_pred             HHHHhcCcccCHHHHhhChhhhcCCCCCCcch
Confidence            8643     12223333445667888888876

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.82  E-value=9.7e-19  Score=172.89  Aligned_cols=199  Identities=11%  Similarity=0.060  Sum_probs=151.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVI  204 (420)
                      |||+|||+|.||.+||..|.++|  ++|++|+|++++++.+.+.|              +....++++++++   +|+||
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~s~~~~~~~~~~advVi   64 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLG--------------ITARHSLEELVSKLEAPRTIW   64 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHHhCCCCCEEE
Confidence            58999999999999999999998  89999999999888886643              2445577777655   69999


Q ss_pred             EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      +|+|.. .++++++++.+.++++++||.+++ ..+.+...+.+.+.+. |     +.++.+|...........+ .++.+
T Consensus        65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g  136 (299)
T PRK12490         65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGGN-SRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG  136 (299)
T ss_pred             EEecCchHHHHHHHHHhccCCCCCEEEECCC-CCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence            999987 899999999888888999999986 4444444444444432 2     3456666655432222223 34566


Q ss_pred             CCHHHHHHHHHHHhcCCc---eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcC--
Q 014700          284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--  358 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~---~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~G--  358 (420)
                      ++++.+++++++|+..+.   ++++..++                 |....+|+.+|........++.|+..++++.|  
T Consensus       137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~  199 (299)
T PRK12490        137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD  199 (299)
T ss_pred             CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            788899999999999876   56666653                 23344567778888888999999999999999  


Q ss_pred             CChhhhhhc
Q 014700          359 AKPATITGL  367 (420)
Q Consensus       359 i~~~t~~~l  367 (420)
                      +|++.+++.
T Consensus       200 ld~~~~~~~  208 (299)
T PRK12490        200 FDVEDVARL  208 (299)
T ss_pred             CCHHHHHHH
Confidence            999999874

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.82  E-value=1e-18  Score=172.04  Aligned_cols=225  Identities=20%  Similarity=0.245  Sum_probs=157.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|.||..+|..|++.|  ++|.+|+|+++..+.+.+.+              +...++++++++++|+||+|
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~~~~e~~~~~d~vi~~   65 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAG--------------AETASTAKAVAEQCDVIITM   65 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEe
Confidence            579999999999999999999998  89999999998888777643              23455788888999999999


Q ss_pred             cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +|. ..++.++   +++.+.++++++|++++. +.+.+.+.+.+.+.+. |     ..++..|.+..+.........++.
T Consensus        66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~  138 (296)
T PRK11559         66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV  138 (296)
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence            995 5567776   456777888999998875 4554444444444432 2     235566655432211122233444


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +.+++.++++.++|+..+.++.+..+.-..+.                 +|+.+|...+....++.|+..++++.|++++
T Consensus       139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~-----------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  201 (296)
T PRK11559        139 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNV-----------------TKLANQVIVALNIAAMSEALVLATKAGVNPD  201 (296)
T ss_pred             CCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            56788899999999998887776655422222                 3455666666777899999999999999999


Q ss_pred             hhhhcc--ccc--hhhhh-hcccCCCCccccccc
Q 014700          363 TITGLS--GTG--DIMLT-CFVNLSRNRTVGVRL  391 (420)
Q Consensus       363 t~~~l~--g~g--dl~~t-~~~~~sRn~~~G~~l  391 (420)
                      .+++..  +.+  ..+.+ .....+|+|..||.+
T Consensus       202 ~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~  235 (296)
T PRK11559        202 LVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRI  235 (296)
T ss_pred             HHHHHHhcCcccCHHHHhhchHhhcCCCCCCcch
Confidence            887643  222  22221 223457888888764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.81  E-value=3.3e-19  Score=176.71  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=154.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCC-CCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPE-QKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~-~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|+||+.+|..|+++|  ++|++++|+.++++.+++. |+......+ ...+  +... +.+ ....+|+||
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~~-~~~-~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPAE-TAD-AAEPIHRLL   75 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCCC-Ccc-cccccCEEE
Confidence            479999999999999999999998  8999999998888989864 432211111 1111  1111 222 246789999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CCe-----EEEECcccHHHHhhcCCeE
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPF-----IALSGPSFALELMNKLPTA  278 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-~~~-----~vl~GP~~a~ev~~g~~t~  278 (420)
                      +|||++++.++++++.+++.+++.||+++||+..+      +.+.+.++... ...     +...+|....+..   ...
T Consensus        76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~---~g~  146 (305)
T PRK05708         76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAG---HGF  146 (305)
T ss_pred             EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEec---eEE
Confidence            99999999999999999999999999999999875      33445554321 011     1112343332211   112


Q ss_pred             EEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHHHc
Q 014700          279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM  357 (420)
Q Consensus       279 i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~-~al~~~~~~E~~~lA~a~  357 (420)
                      +.++..+.+..+++.++|+..|+.+..++|+.+..|.|++.|...+..+...+...+.-.. ..++...+.|+.+++++.
T Consensus       147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~  226 (305)
T PRK05708        147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC  226 (305)
T ss_pred             EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence            3455444456788999999999999999999999999999997655555554444432111 146788999999999999


Q ss_pred             CCC
Q 014700          358 GAK  360 (420)
Q Consensus       358 Gi~  360 (420)
                      |+.
T Consensus       227 G~~  229 (305)
T PRK05708        227 GQP  229 (305)
T ss_pred             CCC
Confidence            986

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.80  E-value=2.5e-18  Score=179.55  Aligned_cols=208  Identities=11%  Similarity=0.065  Sum_probs=152.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDi  202 (420)
                      .+++|||||+|.||..||.+|+++|  ++|++|+|++++++.+.+.+...    +.   ..+....+++|+++.   +|+
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCE
Confidence            3578999999999999999999999  99999999999998887631100    00   012345678887765   999


Q ss_pred             EEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      ||+|||. .+++++++.+.+.+.++.+||.+++ +.+.+.....+.+.+. |     +.++..|....+....... .++
T Consensus        76 Ii~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~-~im  147 (493)
T PLN02350         76 VIILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGP-SLM  147 (493)
T ss_pred             EEEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCC-eEE
Confidence            9999995 5689999999999999999999987 4444334444445443 3     3466666655433322223 346


Q ss_pred             ecCCHHHHHHHHHHHhcCCce------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014700          282 ASKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT  355 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~  355 (420)
                      .+++++.+++++++|+..+-+      +.+.++.                 |....+|+.+|.......+++.|+..+++
T Consensus       148 ~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~  210 (493)
T PLN02350        148 PGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLK  210 (493)
T ss_pred             ecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667889999999999987643      5555553                 23344566778888888999999999999


Q ss_pred             H-cCCChhhhhhc
Q 014700          356 K-MGAKPATITGL  367 (420)
Q Consensus       356 a-~Gi~~~t~~~l  367 (420)
                      + .|++++.+.+.
T Consensus       211 ~~~Gld~~~l~~v  223 (493)
T PLN02350        211 SVGGLSNEELAEV  223 (493)
T ss_pred             hhCCCCHHHHHHH
Confidence            8 69999988774

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.80  E-value=4.5e-18  Score=168.27  Aligned_cols=199  Identities=11%  Similarity=0.098  Sum_probs=149.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVI  204 (420)
                      |||+|||+|.||.+||..|+++|  ++|.+|+|++++++.+.+.|              +...++++++++.   +|+||
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~~~~~dvvi   64 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEG--------------ATGADSLEELVAKLPAPRVVW   64 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHhhcCCCCEEE
Confidence            68999999999999999999998  99999999999888887644              2445577776654   69999


Q ss_pred             EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      +++|.. .++++++.+.+.+++++++|+++++. +.+...+.+.+.+. |     +.++..|............ .++.+
T Consensus        65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~-~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g  136 (301)
T PRK09599         65 LMVPAGEITDATIDELAPLLSPGDIVIDGGNSY-YKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG  136 (301)
T ss_pred             EEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC-hhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence            999986 78999999988898999999998744 33333444444432 3     3355666554322211123 34556


Q ss_pred             CCHHHHHHHHHHHhcCCc----eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH--c
Q 014700          284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M  357 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~----~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a--~  357 (420)
                      ++++.+++++++|+..+-    ++++.+++ |                ....+|+.+|........++.|...++++  .
T Consensus       137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-G----------------~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~  199 (301)
T PRK09599        137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-G----------------AGHFVKMVHNGIEYGMMQAYAEGFELLEASRF  199 (301)
T ss_pred             CCHHHHHHHHHHHHHHcccccCCeEeECCC-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            788999999999998876    56666664 2                22334556777777888899999999999  9


Q ss_pred             CCChhhhhhc
Q 014700          358 GAKPATITGL  367 (420)
Q Consensus       358 Gi~~~t~~~l  367 (420)
                      |++++++++.
T Consensus       200 gld~~~~~~~  209 (301)
T PRK09599        200 DLDLAAVAEV  209 (301)
T ss_pred             CCCHHHHHHH
Confidence            9999999874

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.80  E-value=2.4e-18  Score=179.21  Aligned_cols=252  Identities=12%  Similarity=0.079  Sum_probs=170.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc---CCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~---~aDiV  203 (420)
                      |++|+|||+|.||++||.+|+++|  |+|++|+|++++++.+.+.+.+..        ..+..++++++++.   ++|+|
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g--------~~i~~~~s~~e~v~~l~~~d~I   70 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGN--------TRVKGYHTLEELVNSLKKPRKV   70 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcC--------CcceecCCHHHHHhcCCCCCEE
Confidence            468999999999999999999999  999999999999998887532211        02345678888775   58999


Q ss_pred             EEccC-hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          204 LHAMP-VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       204 IlaVp-~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |++|| ...++++++++.+++.++++||.++|+...++.+.. +.+.+. |     +.++..|....+........ ++.
T Consensus        71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~  142 (470)
T PTZ00142         71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP  142 (470)
T ss_pred             EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence            99876 567999999999999999999999998776654443 333332 3     34555555554332222233 455


Q ss_pred             cCCHHHHHHHHHHHhcCCce------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-
Q 014700          283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-  355 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~-  355 (420)
                      +++++.+++++++|+..+-+      +.+..+.                 |...-+|+.+|.......+++.|+..+++ 
T Consensus       143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~  205 (470)
T PTZ00142        143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH  205 (470)
T ss_pred             eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            66888999999999987655      4444442                 23334456678878888899999999998 


Q ss_pred             HcCCChhhhhhcc-----ccch--hhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhh
Q 014700          356 KMGAKPATITGLS-----GTGD--IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLL  417 (420)
Q Consensus       356 a~Gi~~~t~~~l~-----g~gd--l~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~  417 (420)
                      +.|++++.+.+..     |...  ++--+...+..+-.-    +-+..++.+..+.+|-=+|.=|+...
T Consensus       206 ~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~~d~~----~~~~~l~~i~d~~~~~gtg~wt~~~a  270 (470)
T PTZ00142        206 ILGMSNEELSEVFNKWNEGILNSYLIEITAKILAKKDDL----GEEHLVDKILDIAGSKGTGKWTVQEA  270 (470)
T ss_pred             hcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhccccc----CCCcchhhhcCcccCCchHHhHHHHH
Confidence            7999998886642     1111  111111111111111    11245777777777766666665543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.79  E-value=2.1e-18  Score=155.81  Aligned_cols=155  Identities=20%  Similarity=0.230  Sum_probs=115.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|.||..||.+|.++|  ++|++|+|++++++++.+.+              +...++++|+++.+|+||+|
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence            689999999999999999999999  99999999999999998864              46778999999999999999


Q ss_pred             cCh-hhHHHHHHH--hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       207 Vp~-~~l~~vl~~--i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      +|+ .++++++.+  +.+.+.+++++|.+++ +.+++.+.+.+.+.+. |     +.++.+|..............++.+
T Consensus        65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g  137 (163)
T PF03446_consen   65 VPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG  137 (163)
T ss_dssp             SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred             cccchhhhhhhhhhHHhhccccceEEEecCC-cchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence            996 679999998  9999999999999885 7776655555555443 2     3455555544332222223345566


Q ss_pred             CCHHHHHHHHHHHhcCCceEE
Q 014700          284 KDRKLANAVQQLLASKHLRIS  304 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~  304 (420)
                      ++++.+++++++|+..+.+++
T Consensus       138 G~~~~~~~~~~~l~~~~~~v~  158 (163)
T PF03446_consen  138 GDEEAFERVRPLLEAMGKNVY  158 (163)
T ss_dssp             S-HHHHHHHHHHHHHHEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCce
Confidence            788999999999998877766

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02858 fructose-bisphosphate aldolase

Probab=99.78  E-value=1.1e-17  Score=192.99  Aligned_cols=227  Identities=14%  Similarity=0.103  Sum_probs=171.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||||||+|.||..||.+|.++|  |+|++|||++++++.+.+.|              ....+++.|+.++||+||+|
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELG--------------GHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEE
Confidence            468999999999999999999999  99999999999999988754              24556899999999999999


Q ss_pred             cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +|. .++++++   +.+.+.+.+++++|.+++ +.+++.+.+.+.+.+. |.   .+.++.+|...........+..++.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~ST-i~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~imv  142 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRST-ILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMIIA  142 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCC-CCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEEE
Confidence            995 5688887   457777888999999885 7777666666666543 31   1446666666543322334456677


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEc-CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                      +++++.+++++++|+..+..+++. ++.                 |....+|+.+|.+......++.|+..+|++.|+++
T Consensus       143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~  205 (1378)
T PLN02858        143 SGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHP  205 (1378)
T ss_pred             cCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            788899999999999988877653 553                 33345567788888888899999999999999999


Q ss_pred             hhhhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700          362 ATITGLS--GTGD---IMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       362 ~t~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l  391 (420)
                      +.+++..  +.|.   +.........++|..||.+
T Consensus       206 ~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l  240 (1378)
T PLN02858        206 WIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFL  240 (1378)
T ss_pred             HHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchh
Confidence            9998843  2232   1112224567888888764

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.77  E-value=3.1e-17  Score=169.11  Aligned_cols=219  Identities=16%  Similarity=0.128  Sum_probs=157.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~  199 (420)
                      +|||+|||+|.||.+||..|+++|  |+|++||+++++++.++..+ ...+.++..       -...+.++++    +++
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~~   75 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PEP   75 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----ccc
Confidence            689999999999999999999999  99999999999999887533 222333221       0122444443    347


Q ss_pred             CcEEEEccCh----------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--------CCCCeEE
Q 014700          200 ADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFIA  261 (420)
Q Consensus       200 aDiVIlaVp~----------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~--------~~~~~~v  261 (420)
                      ||+||+|||.          .++.++++.+.++++++++||..+. +.+.+.+.+...+.+....        ....+.+
T Consensus        76 aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v  154 (415)
T PRK11064         76 ADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQAGEQADINI  154 (415)
T ss_pred             CCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence            9999999997          5788888999999999999887774 7777666666666553111        0123556


Q ss_pred             EECcccHHH---Hh-hcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh
Q 014700          262 LSGPSFALE---LM-NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (420)
Q Consensus       262 l~GP~~a~e---v~-~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N  337 (420)
                      .+.|.+..+   .. ...+..+ +++.+++..++++++|+..+-.+....++...|.                 .|+.+|
T Consensus       155 ~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~-----------------~Kl~~N  216 (415)
T PRK11064        155 AYCPERVLPGQVMVELIKNDRV-IGGMTPVCSARASELYKIFLEGECVVTNSRTAEM-----------------CKLTEN  216 (415)
T ss_pred             EECCCccCCCChhhhhcCCCEE-EEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHH-----------------HHHHHH
Confidence            788866543   11 1234433 5666888899999999987655555556544444                 445677


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhhhhccccc
Q 014700          338 SMAALVAQGCSEIRWLATKMGAKPATITGLSGTG  371 (420)
Q Consensus       338 ~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~g  371 (420)
                      .+.++....++|+..+|+++|+|++.+.+.++..
T Consensus       217 ~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~  250 (415)
T PRK11064        217 SFRDVNIAFANELSLICADQGINVWELIRLANRH  250 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccC
Confidence            8888889999999999999999999998765543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.77  E-value=4e-17  Score=161.32  Aligned_cols=199  Identities=11%  Similarity=0.076  Sum_probs=143.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hccCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al~~aDiVI  204 (420)
                      |||+|||+|.||.+||..|+++|  ++|.+|+|+++.++.+.+.+..              ...++++   .+..+|+||
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi   64 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW   64 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence            68999999999999999999998  9999999999999888875421              1124433   346789999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      +|||+..++++++++.+.++++++||+++++...++.+ ..+.+.+. |     +.++..|............ .++.++
T Consensus        65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~-~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG  136 (298)
T TIGR00872        65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLR-RYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG  136 (298)
T ss_pred             EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccHHH-HHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence            99999999999999999999999999999876554322 22333321 2     2345555443222111122 335566


Q ss_pred             CHHHHHHHHHHHhcCCc---eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc--CC
Q 014700          285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM--GA  359 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~---~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~--Gi  359 (420)
                      +++.+++++++|+..+-   .+++..+. |                ....+|+.+|........++.|...++++.  |+
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-G----------------~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l  199 (298)
T TIGR00872       137 DGEAFARAEPLFADVAPEEQGYLYCGPC-G----------------SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF  199 (298)
T ss_pred             CHHHHHHHHHHHHHhcCcCCCEEEECCc-c----------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            88899999999998664   34555553 2                223344566777777888999999999998  56


Q ss_pred             Chhhhhhc
Q 014700          360 KPATITGL  367 (420)
Q Consensus       360 ~~~t~~~l  367 (420)
                      +++++.+.
T Consensus       200 d~~~~~~i  207 (298)
T TIGR00872       200 DIPEVARV  207 (298)
T ss_pred             CHHHHHHH
Confidence            99888874

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.76  E-value=3.7e-17  Score=188.59  Aligned_cols=227  Identities=12%  Similarity=0.128  Sum_probs=166.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +++|+|||+|+||.+||.+|+++|  ++|++|+|+++.++.+.+.|.              ...+++++++++||+||+|
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence            479999999999999999999998  999999999998888876542              2345788889999999999


Q ss_pred             cC-hhhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp-~~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      || +.++++++   ..+.+.+.+++++|.+++ +.+++.+.+.+.+.+. +   ..+.++.+|...........+..++.
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv  462 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA  462 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence            99 56788887   346666788999999885 6776666666666552 1   13456666665543322233444566


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEE-cCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~-s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                      +++++.+++++++|+..+-++++ .+++                 |..+.+|+.+|.+......++.|+..++++.|+++
T Consensus       463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~  525 (1378)
T PLN02858        463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT  525 (1378)
T ss_pred             ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            67888999999999998877765 4454                 22344556677777778889999999999999999


Q ss_pred             hhhhhcc--ccch---hhhhhcccCCCCccccccc
Q 014700          362 ATITGLS--GTGD---IMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       362 ~t~~~l~--g~gd---l~~t~~~~~sRn~~~G~~l  391 (420)
                      +++++..  +.+.   +.........++|..+|.+
T Consensus       526 ~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l  560 (1378)
T PLN02858        526 RKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSAL  560 (1378)
T ss_pred             HHHHHHHHhhcccChhhhhccchhhcCCCCCCchh
Confidence            9998732  2221   1111224567888888764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=1.1e-16  Score=159.65  Aligned_cols=225  Identities=20%  Similarity=0.215  Sum_probs=174.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~a  200 (420)
                      |||+|||.|.+|...|..|++.|  |+|+.+|.++++++.|++ |.-+.|.|++.       ...++++++|.+++++++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence            79999999999999999999998  999999999999999997 66778888763       133489999999999999


Q ss_pred             cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      |++|+||++.          +++++++.|.++++..++||.=+ .+.+.+.+.+.+.+.+....  ..+.+.+.|.|.+|
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS-TVPvGt~~~v~~~i~~~~~~--~~f~v~~NPEFLRE  154 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS-TVPVGTTEEVRAKIREENSG--KDFEVASNPEFLRE  154 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC-CCCCCchHHHHHHHHhhccc--CCceEecChHHhcC
Confidence            9999999852          58888999999987766665433 36667766666666655433  26778999999987


Q ss_pred             Hh----hcCCeEEEEecCCHHHHHHHHHHHhcC---CceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014700          271 LM----NKLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV  343 (420)
Q Consensus       271 v~----~g~~t~i~ia~~d~e~~~~l~~ll~~~---g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~  343 (420)
                      ..    .-.|..++++..+....+.+++++...   ..++ ...|+..+|+-                 |+..|+..+.-
T Consensus       155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~-l~t~~~~AE~I-----------------KyaaNafLAtK  216 (414)
T COG1004         155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPI-LFTDLREAELI-----------------KYAANAFLATK  216 (414)
T ss_pred             cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCE-EEecchHHHHH-----------------HHHHHHHHHHH
Confidence            32    236778889887776677888888652   4443 34566665554                 45667777888


Q ss_pred             HHHHHHHHHHHHHcCCChhhhhhccccchhhhh
Q 014700          344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLT  376 (420)
Q Consensus       344 ~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t  376 (420)
                      ..-++|+..+|++.|+|...+.+--|+-+.+-.
T Consensus       217 IsFiNEia~ice~~g~D~~~V~~gIGlD~RIG~  249 (414)
T COG1004         217 ISFINEIANICEKVGADVKQVAEGIGLDPRIGN  249 (414)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCchhhH
Confidence            889999999999999999988876666665543

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.75  E-value=1.8e-16  Score=153.75  Aligned_cols=194  Identities=12%  Similarity=0.124  Sum_probs=137.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~----~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      |||+|||+|+||.+|+..|.++|  +    +|++| +|++++.+.+.+.|              +...++++++++++|+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv   64 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV   64 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence            79999999999999999999988  6    89998 99998877776543              3455677788889999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||+|+|++.++++++++.+.+.++++||++++|+..+       .+.+.++..  . .+...|+.+..+..+. +.++..
T Consensus        65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~-~~l~~~  133 (266)
T PLN02688         65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAA-SVMSLG  133 (266)
T ss_pred             EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCce-EEEEeC
Confidence            9999999999999999988888899999998888653       233444431  2 2336788776654433 333333


Q ss_pred             -cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       283 -~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                       +.+++..++++++|+..|. +++.++-..        +.+....|..       ......+..++.|.   +.+.|+++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~--------d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~  194 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLL--------DAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR  194 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHc--------chhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence             3477888999999999998 555432110        0000011111       12244566677777   88899999


Q ss_pred             hhhhhc
Q 014700          362 ATITGL  367 (420)
Q Consensus       362 ~t~~~l  367 (420)
                      +...++
T Consensus       195 ~~a~~~  200 (266)
T PLN02688        195 DVALSL  200 (266)
T ss_pred             HHHHHH
Confidence            988775

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.75  E-value=1.8e-16  Score=154.82  Aligned_cols=199  Identities=14%  Similarity=0.131  Sum_probs=142.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|+||.+|+..|.++|.  .++|++|+|+++.++.+.+..             ++..+++.++++++||+||
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-------------GITITTNNNEVANSADILI   68 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-------------CcEEeCCcHHHHhhCCEEE
Confidence            3689999999999999999999872  247999999998887776521             1344557777788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S  283 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-~  283 (420)
                      +|||++.++++++++.++++++++||++..|+..+       .+.+.++..  .-.+...|+.+..+..+. +.+..+ .
T Consensus        69 LavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~-t~~~~~~~  138 (272)
T PRK12491         69 LSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGM-SALCFNEM  138 (272)
T ss_pred             EEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCce-EEEEeCCC
Confidence            99999999999999999888889999999999864       355555431  125789999998876663 333332 2


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+.+..+.+..+|+..|......++...         .+....|.      +    .+++...+..+..-+.++|++.+.
T Consensus       139 ~~~~~~~~v~~lf~~~G~~~~~~E~~~d---------~~talsgs------g----PAf~~~~~eal~~a~v~~Gl~~~~  199 (272)
T PRK12491        139 VTEKDIKEVLNIFNIFGQTEVVNEKLMD---------VVTSISGS------S----PAYVYMFIEAMADAAVLGGMPRKQ  199 (272)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEcHHHhh---------hHHHhccC------c----HHHHHHHHHHHHHHHHHcCCCHHH
Confidence            3567788999999999987666544321         11111111      1    234455556666677777888776


Q ss_pred             hhhc
Q 014700          364 ITGL  367 (420)
Q Consensus       364 ~~~l  367 (420)
                      ...+
T Consensus       200 A~~l  203 (272)
T PRK12491        200 AYKF  203 (272)
T ss_pred             HHHH
Confidence            6553

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.74  E-value=3.5e-17  Score=160.09  Aligned_cols=213  Identities=15%  Similarity=0.114  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCC-CCCCCceEEeCCHHHhccCCcEEEEccChhhHHHH
Q 014700          137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF  215 (420)
Q Consensus       137 amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~-~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~v  215 (420)
                      +||+.+|..|+++|  |+|++++|+ ++.+.+++.|+......+ .... .+.+++++++ +.++|+||+|||+.+++++
T Consensus         1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~   75 (293)
T TIGR00745         1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA   75 (293)
T ss_pred             CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence            58999999999998  999999997 678889887764432211 2121 3445666766 6789999999999999999


Q ss_pred             HHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEEEEecCC--HH
Q 014700          216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVVASKD--RK  287 (420)
Q Consensus       216 l~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i~ia~~d--~e  287 (420)
                      ++.+.+++.++++||+++||+...      +.+.+.++...      ...+...+|+...+...+   .+.++..+  .+
T Consensus        76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~---~~~iG~~~~~~~  146 (293)
T TIGR00745        76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLG---ATKIGDYVGENE  146 (293)
T ss_pred             HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccc---cEEEecCCCchH
Confidence            999999999999999999999864      23444443211      011234456544332222   23444432  25


Q ss_pred             HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc---h-hHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---N-NSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       288 ~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg---~-N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      ..+.+.++|+..++.+..++|+....|.|++.|......+...+..++   . .....++..++.|+.++++++|+++..
T Consensus       147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~  226 (293)
T TIGR00745       147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD  226 (293)
T ss_pred             HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            678899999999999999999999999999999744433333333322   2 335689999999999999999987543

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.73  E-value=3.3e-16  Score=163.40  Aligned_cols=225  Identities=17%  Similarity=0.228  Sum_probs=163.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-C-----CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-l-----~~~i~a~td~~eal~~a  200 (420)
                      +|||+|||+|++|..+|..|+++|++++|+++|+++++++.+++.+. +.+.++.. +     ..++.++++.++++++|
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            58999999999999999999998655889999999999999998543 22233321 1     23588999998889999


Q ss_pred             cEEEEccC--hh-------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECc
Q 014700          201 DYCLHAMP--VQ-------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP  265 (420)
Q Consensus       201 DiVIlaVp--~~-------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP  265 (420)
                      |++|+|||  ..             +++++++.|.++++++++||.-+ .+.+.+.+.+...+.+...+  ..+.+.+.|
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S-Tvp~Gtt~~~~~~l~~~~~g--~~f~v~~~P  156 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG--INFQILSNP  156 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC-CCCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence            99999996  21             58889999999999888877554 36666655555555543211  356788899


Q ss_pred             ccHHHHh--h--cCCeEEEEecCC----HHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccch
Q 014700          266 SFALELM--N--KLPTAMVVASKD----RKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN  336 (420)
Q Consensus       266 ~~a~ev~--~--g~~t~i~ia~~d----~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~  336 (420)
                      .+..+..  .  ..+..+++++.+    ++..+++.++++..- -..+...++..+|+.|.                 ..
T Consensus       157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~-----------------~e  219 (473)
T PLN02353        157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKL-----------------AA  219 (473)
T ss_pred             CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHH-----------------HH
Confidence            8876521  1  234456667654    335677888887542 12344567777776654                 45


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700          337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGD  372 (420)
Q Consensus       337 N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd  372 (420)
                      |...++....++|+..+|+++|+|...+.+.++.-.
T Consensus       220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~  255 (473)
T PLN02353        220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDS  255 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCC
Confidence            677788888999999999999999988887665443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.73  E-value=3.3e-16  Score=160.05  Aligned_cols=212  Identities=20%  Similarity=0.192  Sum_probs=146.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-----CCCceEEeCCHHHhccCCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-----l~~~i~a~td~~eal~~aDi  202 (420)
                      |||+|||+|.||..+|..|+. |  |+|++||+++++++.+++ |..+.+.++..     ....+..++++++++.++|+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~   76 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY   76 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence            699999999999999988875 7  999999999999999987 33333333321     11235556667788899999


Q ss_pred             EEEccChh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH
Q 014700          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL  271 (420)
Q Consensus       203 VIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev  271 (420)
                      ||+|||..           +++++++++.. ++++++||..+. +.+.+.+.+.+.+.+        ..+.++|.++.+.
T Consensus        77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST-v~pgtt~~l~~~~~~--------~~v~~~PE~l~~G  146 (388)
T PRK15057         77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST-VPVGFTAAMHKKYRT--------ENIIFSPEFLREG  146 (388)
T ss_pred             EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee-cCCchHHHHHHHhhc--------CcEEECcccccCC
Confidence            99999954           57888888877 578888887764 777665444433322        1245688877642


Q ss_pred             h----hcCCeEEEEecCCHHHHHHHHHHHhc--CCceEE-EcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 014700          272 M----NKLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA  344 (420)
Q Consensus       272 ~----~g~~t~i~ia~~d~e~~~~l~~ll~~--~g~~v~-~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~  344 (420)
                      .    ...|..+++++. ++.++++.++|..  .+-.+. +..++..+|+                 .|+.+|...++..
T Consensus       147 ~a~~d~~~p~rvv~G~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I  208 (388)
T PRK15057        147 KALYDNLHPSRIVIGER-SERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV  208 (388)
T ss_pred             cccccccCCCEEEEEcC-cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence            1    013334555554 4556777777754  221222 3455544444                 4466778888889


Q ss_pred             HHHHHHHHHHHHcCCChhhhhhccccc
Q 014700          345 QGCSEIRWLATKMGAKPATITGLSGTG  371 (420)
Q Consensus       345 ~~~~E~~~lA~a~Gi~~~t~~~l~g~g  371 (420)
                      ..++|+..+|+++|+|.+.+.+..+.-
T Consensus       209 a~~NE~a~lae~~GiD~~eV~~a~~~d  235 (388)
T PRK15057        209 AYFNELDSYAESLGLNTRQIIEGVCLD  235 (388)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHhcCC
Confidence            999999999999999999988765533

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.72  E-value=2e-16  Score=164.92  Aligned_cols=203  Identities=10%  Similarity=0.080  Sum_probs=146.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcEEEE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH  205 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDiVIl  205 (420)
                      +|+|||+|.||.+||.+|+++|  ++|++|+|++++++.+.+.+....         .+...+++++++   +.+|+||+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~g~---------~~~~~~s~~e~v~~l~~~dvIil   69 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAKGK---------KIVGAYSIEEFVQSLERPRKIML   69 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccCCC---------CceecCCHHHHHhhcCCCCEEEE
Confidence            4899999999999999999999  999999999999988886521100         123344666644   57899999


Q ss_pred             ccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       206 aVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      +||+ ..++++++++.+++.++++||+++|+...++.+. .+.+.+.      .+.++.+|....+........ ++.++
T Consensus        70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~------gi~fvdapVsGG~~gA~~G~~-im~GG  141 (467)
T TIGR00873        70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK------GILFVGSGVSGGEEGARKGPS-IMPGG  141 (467)
T ss_pred             ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc------CCEEEcCCCCCCHHHHhcCCc-CCCCC
Confidence            9997 7799999999999999999999998665544333 2233322      234666666554332222233 34667


Q ss_pred             CHHHHHHHHHHHhcCCceE------EEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-Hc
Q 014700          285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM  357 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v------~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~-a~  357 (420)
                      +++.+++++++|+..+-++      .+.++.                 |....+|+.+|.....+.+++.|+..|++ +.
T Consensus       142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~  204 (467)
T TIGR00873       142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL  204 (467)
T ss_pred             CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999876542      333332                 33344567788888888999999999985 79


Q ss_pred             CCChhhhhhc
Q 014700          358 GAKPATITGL  367 (420)
Q Consensus       358 Gi~~~t~~~l  367 (420)
                      |++++.+.+.
T Consensus       205 g~~~~~l~~v  214 (467)
T TIGR00873       205 GLSNEEIAEV  214 (467)
T ss_pred             CCCHHHHHHH
Confidence            9998887664

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.72  E-value=3.1e-15  Score=143.15  Aligned_cols=231  Identities=14%  Similarity=0.190  Sum_probs=159.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCC-CCe-EEEEeC-CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMR-DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~-~~~-V~l~~r-~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +..|||+|||+|.||.+++..|.++|. ..+ +++++| ++++.+.+.+..             ++..+++.+++++++|
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~D   68 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSVD   68 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcCC
Confidence            446799999999999999999988762 123 777887 466666666531             2345567888889999


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      +||+|+|++.++++++++.++++ +++||++++|+..+       .+.+.++..  ...++.+|+++.++..+.+.....
T Consensus        69 iViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~  138 (245)
T PRK07634         69 TIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMG  138 (245)
T ss_pred             EEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeC
Confidence            99999999999999999988775 67999999999864       355555432  235679999999998887655444


Q ss_pred             ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                      ...+++..+.++++|+..|...+..++..         +.++...|.      +    .+++...+..+.+.+.+.|+++
T Consensus       139 ~~~~~~~~~~v~~lf~~~G~~~~~~e~~~---------~~~~a~~gs------~----pa~~~~~~~a~~~~~~~~Gl~~  199 (245)
T PRK07634        139 QSVNETHKETLQLILKGIGTSQLCTEEEV---------HQLTAVTGS------A----PAFLYYFAESLIEATKSYGVDE  199 (245)
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEEECHHHc---------chHHhhhcc------h----HHHHHHHHHHHHHHHHHcCCCH
Confidence            45678889999999999998876543321         111111111      1    1233444455566688889998


Q ss_pred             hhhhhcc-----ccchhhhhhcccCCCCccccccccCCCChHHHHHHc----CCcccccchh
Q 014700          362 ATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM----NQVLVNPSMQ  414 (420)
Q Consensus       362 ~t~~~l~-----g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~----~~~~eG~~t~  414 (420)
                      +.-..+.     |.+++                 +.++.++++..++.    |.+++|++..
T Consensus       200 ~~a~~~~~~~~~g~~~~-----------------~~~~~~~~~l~~~v~spgG~T~~gl~~l  244 (245)
T PRK07634        200 ETAKHLVIQMISGSASM-----------------LEQTQDPANLREQVTTPGGSTAEGLKAL  244 (245)
T ss_pred             HHHHHHHHHHHHHHHHH-----------------HhCCCCHHHHHHhCCCCChHHHHHHHHh
Confidence            8766542     32222                 22346677777776    4567777643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.70  E-value=1.1e-15  Score=157.83  Aligned_cols=220  Identities=10%  Similarity=0.100  Sum_probs=152.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-C--CCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-l--~~~i~a~td~~eal~~aDiV  203 (420)
                      .|||+|||+|.||..||..|++ |  |+|++||+++++++.++ .|..+.+.++.. +  ..++.++++.+ ++++||++
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv   80 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY   80 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence            4899999999999999999887 6  89999999999999999 454433332211 0  12456677765 58899999


Q ss_pred             EEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhh-HHHHHHHHhCCC-CCCeEEEECcccHHHH
Q 014700          204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNP-RQPFIALSGPSFALEL  271 (420)
Q Consensus       204 IlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~-~se~l~~~lg~~-~~~~~vl~GP~~a~ev  271 (420)
                      |+|||..          ++....+.|.++++++++||..++ +.+.+.+. ....+.+..|.. ...+.+.+.|.+..+.
T Consensus        81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST-v~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G  159 (425)
T PRK15182         81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST-VYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG  159 (425)
T ss_pred             EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC-CCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence            9999954          455556788899999999887774 77766543 334444422321 1234455666665432


Q ss_pred             h---h-cCCeEEEEecCCHHHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 014700          272 M---N-KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG  346 (420)
Q Consensus       272 ~---~-g~~t~i~ia~~d~e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~  346 (420)
                      .   . ..+..+ +++.+++..+.+.++++... ...+...++...|.                 .|+.+|.+.++....
T Consensus       160 ~a~~~~~~~~ri-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~av~Ia~  221 (425)
T PRK15182        160 DKKHRLTNIKKI-TSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEA-----------------AKVIENTQRDLNIAL  221 (425)
T ss_pred             cccccccCCCeE-EECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence            1   1 233334 44566777888888888643 22344555544444                 446678888899999


Q ss_pred             HHHHHHHHHHcCCChhhhhhcccc
Q 014700          347 CSEIRWLATKMGAKPATITGLSGT  370 (420)
Q Consensus       347 ~~E~~~lA~a~Gi~~~t~~~l~g~  370 (420)
                      ++|+..+|+++|+|.+.+++.++.
T Consensus       222 ~NE~a~lae~~GiD~~~v~~a~~~  245 (425)
T PRK15182        222 VNELAIIFNRLNIDTEAVLRAAGS  245 (425)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHhcC
Confidence            999999999999999999887543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.67  E-value=7.8e-15  Score=143.61  Aligned_cols=159  Identities=11%  Similarity=0.153  Sum_probs=120.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |+||+|||+|+||.+++..|.++|.  .++|.+|+|++ ++.+.+....            ..+..+.+.+++++++|+|
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV   68 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS   68 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence            5799999999999999999998761  26899999864 3344444321            0234456777778899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-  282 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-  282 (420)
                      |+|+|++.+.++++++.++++++++||++++|+..+       .+.+.++.  . -.+...|+.+..+..|. +.+... 
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~--~-~vvR~MPN~~~~~g~g~-t~~~~~~  137 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG--L-QVSRLIPSLTSAVGVGT-SLVAHAE  137 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC--C-CEEEEeCccHHHHhhhc-EEEecCC
Confidence            999999999999999999888888999999999864       34455543  1 25788999998877664 333332 


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                      ..+++..+.++.+|+..|..+.+.++
T Consensus       138 ~~~~~~~~~v~~l~~~~G~~~~v~E~  163 (277)
T PRK06928        138 TVNEANKSRLEETLSHFSHVMTIREE  163 (277)
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEchh
Confidence            23567788999999999988776543

>PRK07680 late competence protein ComER; Validated

Probab=99.67  E-value=2.6e-14  Score=139.41  Aligned_cols=158  Identities=12%  Similarity=0.179  Sum_probs=117.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|+||.+++..|.++|.  .++|.+|+|+++..+.+.+..            .++..+.+.++++.++|+||+
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------------~g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------------PGIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------------CCeEEECCHHHHHHhCCEEEE
Confidence            589999999999999999999872  137999999998877765531            024556677787889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-C
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K  284 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~  284 (420)
                      |||++.+.++++++.+++.++++||++++|+..+       .+.+.++.  .  .+...|+.+.....|. +.+..+. .
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~-------~L~~~~~~--~--~~r~~p~~~~~~~~G~-t~~~~g~~~  136 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVE-------QLETLVPC--Q--VARIIPSITNRALSGA-SLFTFGSRC  136 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC--C--EEEECCChHHHHhhcc-EEEeeCCCC
Confidence            9999999999999999888889999999988632       34444442  1  3445566654433443 2223332 3


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCCh
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDV  309 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di  309 (420)
                      +.+..+.+.++|+..|..+++.+++
T Consensus       137 ~~~~~~~~~~ll~~~G~~~~i~e~~  161 (273)
T PRK07680        137 SEEDQQKLERLFSNISTPLVIEEDI  161 (273)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEChHh
Confidence            5667789999999999887777664

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.67  E-value=1.2e-14  Score=140.37  Aligned_cols=205  Identities=17%  Similarity=0.211  Sum_probs=148.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|||+|||+|+||.+|+..|.++|.  ..+|++.+|++++.+.+.+.-             ++..+++.++++.++|+||
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-------------g~~~~~~~~~~~~~advv~   67 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-------------GVVTTTDNQEAVEEADVVF   67 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-------------CCcccCcHHHHHhhCCEEE
Confidence            5799999999999999999999882  358999999999887565531             1122557778889999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE-ec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV-AS  283 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i-a~  283 (420)
                      +|||++.+++++.++.+ ..++++|||+..|+..+       .+.+.++.  . -.+...|+.+..+..|.. .+.. ..
T Consensus        68 LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~--~-~vvR~MPNt~a~vg~g~t-~i~~~~~  135 (266)
T COG0345          68 LAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG--L-RVVRVMPNTPALVGAGVT-AISANAN  135 (266)
T ss_pred             EEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC--C-ceEEeCCChHHHHcCcce-eeecCcc
Confidence            99999999999999998 77899999999999864       35566652  2 257789999988777642 2333 23


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+.+..+.+.++|+..|.-+++.++....         +....|.      +    .+++...+..+..-+.+.|+++++
T Consensus       136 ~~~~~~~~v~~l~~~~G~v~~v~E~~~da---------~TaisGS------g----PAyv~~~iEal~~agv~~Gl~~~~  196 (266)
T COG0345         136 VSEEDKAFVEALLSAVGKVVEVEESLMDA---------VTALSGS------G----PAYVFLFIEALADAGVRLGLPREE  196 (266)
T ss_pred             CCHHHHHHHHHHHHhcCCeEEechHHhhH---------HHHHhcC------C----HHHHHHHHHHHHHHHHHcCCCHHH
Confidence            46778889999999999887776554321         1111111      1    234455566667778888999888


Q ss_pred             hhhcc-----ccchhhh
Q 014700          364 ITGLS-----GTGDIML  375 (420)
Q Consensus       364 ~~~l~-----g~gdl~~  375 (420)
                      ...++     |.+.+..
T Consensus       197 A~~l~~~t~~Gaakll~  213 (266)
T COG0345         197 ARELAAQTVAGAAKLLL  213 (266)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77643     5555543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.66  E-value=3.9e-14  Score=138.65  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=134.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG--~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..|||+|||+|+||.+|+..|.++|  ..++|++|+|+. ++.+.+.+..             ++..++++.++++++|+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv   68 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI   68 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence            3579999999999999999999886  236899999975 4556665431             23455677888889999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||+|||++.+.++++++.+.++++++||++++|+.+++       +.+.++..  .-.+...|+.+..+..+. + ++.+
T Consensus        69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~~-t-~~~~  137 (279)
T PRK07679         69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKSA-T-AISP  137 (279)
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhccc-E-EEee
Confidence            99999999999999999888888899999999998653       33333321  124556687765544332 3 2223


Q ss_pred             c--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       283 ~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      +  .+++..+.++++|+..|..++..++..         +.+....|.      +. .....+..++.|.   +.+.|++
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gs------gp-a~~~~~~eal~e~---~~~~Gl~  198 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGS------GP-AYIYYVVEAMEKA---AKKIGLK  198 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcC------HH-HHHHHHHHHHHHH---HHHcCCC
Confidence            3  246788999999999998766544321         110001111      11 1233334444444   8888999


Q ss_pred             hhhhhhc
Q 014700          361 PATITGL  367 (420)
Q Consensus       361 ~~t~~~l  367 (420)
                      ++....+
T Consensus       199 ~~~a~~~  205 (279)
T PRK07679        199 EDVAKSL  205 (279)
T ss_pred             HHHHHHH
Confidence            8887764

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.7e-14  Score=143.65  Aligned_cols=218  Identities=17%  Similarity=0.172  Sum_probs=159.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~  199 (420)
                      .++|+|||+|.+|.++|..++++|  ++|+.+|.++.+++.+++.. .....++..       -...+++++|+++ ++.
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G~-~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~   84 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRGE-SYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE   84 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCCc-ceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence            379999999999999999999999  99999999999999999743 221122221       1346899999987 579


Q ss_pred             CcEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECccc
Q 014700          200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSF  267 (420)
Q Consensus       200 aDiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~  267 (420)
                      ||++|+|||..          +++...+.|+++|++|.+||.=+. +.+.+.+.+...+.+..++..  .++.+-+.|..
T Consensus        85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST-~~PGTTe~v~~plle~~sgL~~~~Df~laysPER  163 (436)
T COG0677          85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST-TPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER  163 (436)
T ss_pred             CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC-CCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence            99999999962          578888999999999999886654 666666666666655422211  34555555543


Q ss_pred             HH-----HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 014700          268 AL-----ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL  342 (420)
Q Consensus       268 a~-----ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al  342 (420)
                      ..     .-....+  -++++.+++..+..+.+.+..--.+...++...+|++|++-                 |.....
T Consensus       164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~E-----------------N~fRdV  224 (436)
T COG0677         164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTE-----------------NTFRDV  224 (436)
T ss_pred             cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHh-----------------hhhhHH
Confidence            32     1111222  35678888888888888887655567778888888887654                 555677


Q ss_pred             HHHHHHHHHHHHHHcCCChhhhhhcc
Q 014700          343 VAQGCSEIRWLATKMGAKPATITGLS  368 (420)
Q Consensus       343 ~~~~~~E~~~lA~a~Gi~~~t~~~l~  368 (420)
                      ..+..+|+..+|.++|++...+++++
T Consensus       225 NIALaNElali~~~~GIdvwevIeaA  250 (436)
T COG0677         225 NIALANELALICNAMGIDVWEVIEAA  250 (436)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHh
Confidence            78888999999999999976666643

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.63  E-value=9e-14  Score=134.89  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=114.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||||+|||+|+||.+++..|.++|. .++|.+|+|+++..+.+.+..             ++...++.++++.++|+||+
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------------g~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------------GVRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------------CCeecCChHHHHhcCCEEEE
Confidence            6899999999999999999998762 157999999998888777641             12344567777889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-C
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K  284 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~  284 (420)
                      |+|.+.++++++++.+++  +++||++++|+..+       .+.+.++..  .-.+..-|+++..+..+ .+.+.... .
T Consensus        69 ~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~-~~~i~~~~~~  136 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAG-MTALTANALV  136 (267)
T ss_pred             EcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCc-eEEEecCCCC
Confidence            999999999999998876  57899999998643       344444421  12344567776554433 22233322 3


Q ss_pred             CHHHHHHHHHHHhcCCceEEEc
Q 014700          285 DRKLANAVQQLLASKHLRISTS  306 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s  306 (420)
                      +++..+.++.+|+..|..++..
T Consensus       137 ~~~~~~~v~~l~~~lG~~~~~~  158 (267)
T PRK11880        137 SAEDRELVENLLSAFGKVVWVD  158 (267)
T ss_pred             CHHHHHHHHHHHHhCCeEEEEC
Confidence            7888899999999999766554

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.62  E-value=1.6e-14  Score=145.10  Aligned_cols=200  Identities=14%  Similarity=0.114  Sum_probs=130.3

Q ss_pred             CeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHHhcCCCCCCCCCC
Q 014700          128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK  182 (420)
Q Consensus       128 mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~~-----~~~i~~~g~~~~~l~~~~  182 (420)
                      |||.|.|+|+                    -|++||..|+++|  |+|++|+|+++.     .+.+.+.           
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~-----------   67 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDA-----------   67 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHC-----------
Confidence            6888888886                    4889999999998  999999999873     3334332           


Q ss_pred             CCCceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------
Q 014700          183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------  255 (420)
Q Consensus       183 l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------  255 (420)
                         ++.+++++.++++++|+||+|+|... ++++++++.+.++++++|++++++ .+.   ..++.+.+.++..      
T Consensus        68 ---Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~---~~s~~l~~~l~~~~~~~gi  140 (342)
T PRK12557         68 ---GVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPV---VLYYSLEGELRTKRKDVGI  140 (342)
T ss_pred             ---CCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHH---HHHHHHHHHhcccccccCe
Confidence               34566788888899999999999887 999999999999999999988864 332   2223343333210      


Q ss_pred             --CCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcc
Q 014700          256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN  333 (420)
Q Consensus       256 --~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~  333 (420)
                        .++..+..+|.+...+..+.++.. ....+++.+++++++|+..|.+++..+.  +  ....+|              
T Consensus       141 ~~~~p~~v~Gae~g~l~Vm~gg~t~~-~~~~~~e~~e~v~~LL~a~G~~v~~~~~--g--~~~~vk--------------  201 (342)
T PRK12557        141 SSMHPAAVPGTPQHGHYVIAGKTTNG-TELATEEQIEKCVELAESIGKEPYVVPA--D--VVSAVA--------------  201 (342)
T ss_pred             eecCCccccccccchheEEeCCCccc-ccCCCHHHHHHHHHHHHHcCCEEEEeCH--H--HHHHHH--------------
Confidence              112223334444333333332211 1233678889999999999998876552  2  222222              


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       334 lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                      +.+|...++...++.|...++++.|.++..+.+
T Consensus       202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~  234 (342)
T PRK12557        202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE  234 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            234445555556666666666666666555543

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.60  E-value=1e-13  Score=134.55  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=131.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|+||++++..|.+++.  ..++++++|+++..      +              +....++.++++++|+||
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~Vi   62 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDIIV   62 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEEE
Confidence            4799999999999999999998762  23588888876421      1              123456777778999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S  283 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-~  283 (420)
                      +|+|++.++++++++.+++++ ..||++.+|+..+       .+.+.++..  ...+...|+++..+..+. +.+... .
T Consensus        63 lavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~~  131 (260)
T PTZ00431         63 LAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANNN  131 (260)
T ss_pred             EEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCCC
Confidence            999999999999999988864 6789999999854       344544431  224678999997765542 333322 2


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+.+..+.++++|+..|..+...++...         ++....|.          -.+++...+..+..-+.+.|++.++
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v~E~~~d---------~~ta~~gs----------gPA~~~~~~~al~~~~v~~Gl~~~~  192 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEIKEKDMD---------IATAISGC----------GPAYVFLFIESLIDAGVKNGLNRDV  192 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEEChHHcc---------hhhhhcCC----------HHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            3567789999999999998877654221         11111111          1234455556666777788888877


Q ss_pred             hhhc
Q 014700          364 ITGL  367 (420)
Q Consensus       364 ~~~l  367 (420)
                      ...+
T Consensus       193 a~~l  196 (260)
T PTZ00431        193 SKNL  196 (260)
T ss_pred             HHHH
Confidence            6653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.59  E-value=1e-13  Score=146.24  Aligned_cols=201  Identities=17%  Similarity=0.240  Sum_probs=136.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh----cCCCCCCCCCCC--CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKL--PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~----g~~~~~l~~~~l--~~~i~a~td~~eal~~a  200 (420)
                      +|||+|||+|.||.+||..|+++|  ++|++||++++..+.+.+.    .....+++...+  ..++..++++++++++|
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence            579999999999999999999998  9999999999877665321    000111222111  12367788998889999


Q ss_pred             cEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeE
Q 014700          201 DYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (420)
Q Consensus       201 DiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~  278 (420)
                      |+||.|+|...  .+.+++++.+.++++++|.+.+.|+..+       .+.+.+..+  ...++.-|..+...   .+..
T Consensus        82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~~--~r~~~~hP~nP~~~---~~Lv  149 (495)
T PRK07531         82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTHP--ERLFVAHPYNPVYL---LPLV  149 (495)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc--ceEEEEecCCCccc---CceE
Confidence            99999999764  5557788888888888888888887643       223333321  22344555433221   1222


Q ss_pred             EEEecC--CHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHH
Q 014700          279 MVVASK--DRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ-GCSEIRWLA  354 (420)
Q Consensus       279 i~ia~~--d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~-~~~E~~~lA  354 (420)
                      .++++.  +++.++++.++|+..|...++.. ++                          +|....-+.. .++|+..++
T Consensus       150 evv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~--------------------------~gfi~nrl~~a~~~EA~~L~  203 (495)
T PRK07531        150 ELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI--------------------------DAFVGDRLLEALWREALWLV  203 (495)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC--------------------------cchhHHHHHHHHHHHHHHHH
Confidence            233332  47899999999999998877653 32                          2233323333 469999999


Q ss_pred             HHcCCChhhhhhc
Q 014700          355 TKMGAKPATITGL  367 (420)
Q Consensus       355 ~a~Gi~~~t~~~l  367 (420)
                      ++.|++++.+...
T Consensus       204 ~~g~~s~~~id~~  216 (495)
T PRK07531        204 KDGIATTEEIDDV  216 (495)
T ss_pred             HcCCCCHHHHHHH
Confidence            9999998887653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.59  E-value=8.4e-14  Score=131.67  Aligned_cols=175  Identities=19%  Similarity=0.193  Sum_probs=121.6

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+||| +|+||+++|..|+++|  |+|++|+|++++.+.+.+....  .+........+... +..++++++|+||+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence            6999997 8999999999999998  9999999999888777654311  11111111122333 456778899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch----------hhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc--
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK--  274 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t----------~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g--  274 (420)
                      ||.+.+.++++++.+.+. +++||+++||+..+.          ....++.+++.++..  .-.+..-|+...++..+  
T Consensus        76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~  152 (219)
T TIGR01915        76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD  152 (219)
T ss_pred             CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence            999999999999887775 489999999997520          123356777776531  11222334444333221  


Q ss_pred             --CCeEEEEecCCHHHHHHHHHHHhcC-CceEEEcCChh
Q 014700          275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT  310 (420)
Q Consensus       275 --~~t~i~ia~~d~e~~~~l~~ll~~~-g~~v~~s~Di~  310 (420)
                        ....+.++++|++..+++.++.+.. ||..+....+.
T Consensus       153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~  191 (219)
T TIGR01915       153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE  191 (219)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence              2233567788888888999999998 99987666543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.58  E-value=2.9e-14  Score=139.64  Aligned_cols=174  Identities=16%  Similarity=0.165  Sum_probs=116.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.++|..|.++|  ++|++|+++++..+.+.+.|...            ...++. ++++++|+||+|+
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence            68999999999999999999998  89999999998888777654210            122344 4578999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcc-----cHH-HHhhcCCeEEEE
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPS-----FAL-ELMNKLPTAMVV  281 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~-----~a~-ev~~g~~t~i~i  281 (420)
                      |...+.++++++.++++++++|.++. ++....    .+.+.+.... ......+.|+.     .+. .++.+.+..++.
T Consensus        66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~~-~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p  139 (279)
T PRK07417         66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHPR-FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP  139 (279)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhCC-ceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence            99999999999999888887776544 344321    1222222111 11111223332     121 234555444333


Q ss_pred             e-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHH
Q 014700          282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVL  322 (420)
Q Consensus       282 a-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~  322 (420)
                      . ..+++.++.++++++..|.+++..+.-..++..++..|..
T Consensus       140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp  181 (279)
T PRK07417        140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLP  181 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchH
Confidence            2 3467888999999999999887776666666666655543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.57  E-value=2.5e-13  Score=134.74  Aligned_cols=200  Identities=20%  Similarity=0.224  Sum_probs=130.5

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-----cCCCCCCCC-C--CCCCceEEeCCHHHh
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPE-Q--KLPENVIATTDAKTA  196 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-----g~~~~~l~~-~--~l~~~i~a~td~~ea  196 (420)
                      ..++||+|||+|.||.+||..|+++|  ++|++|+++++.++.+++.     +..   .+. .  ....++..+++++++
T Consensus         2 ~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~   76 (311)
T PRK06130          2 NPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVY---APLGIASAGMGRIRMEAGLAAA   76 (311)
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHh---hhcccHHHHhhceEEeCCHHHH
Confidence            34679999999999999999999998  8999999999887777652     110   000 0  011235667788888


Q ss_pred             ccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc
Q 014700          197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (420)
Q Consensus       197 l~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g  274 (420)
                      +++||+||+|||.+.  ...++.++.++++++++|++.+.|+...       .+.+.++.. ..+ +..-|..+...  +
T Consensus        77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~-~~~-ig~h~~~p~~~--~  145 (311)
T PRK06130         77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRP-ERF-VGTHFFTPADV--I  145 (311)
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCc-ccE-EEEccCCCCcc--C
Confidence            899999999999763  7788888888888888888888887632       233333321 111 11112221111  1


Q ss_pred             CCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700          275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR  351 (420)
Q Consensus       275 ~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~  351 (420)
                      ... .++.+  .+++.++.+.++|+..|..++... |..|.     +.                +|.    ....++|+.
T Consensus       146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~----------------nr~----~~~~~~Ea~  199 (311)
T PRK06130        146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IA----------------NRI----QHALAREAI  199 (311)
T ss_pred             ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HH----------------HHH----HHHHHHHHH
Confidence            112 22333  368889999999999998766654 65442     11                111    224577777


Q ss_pred             HHHHHcCCChhhhhh
Q 014700          352 WLATKMGAKPATITG  366 (420)
Q Consensus       352 ~lA~a~Gi~~~t~~~  366 (420)
                      .+++..|++++.+..
T Consensus       200 ~l~~~g~~~~~~id~  214 (311)
T PRK06130        200 SLLEKGVASAEDIDE  214 (311)
T ss_pred             HHHHcCCCCHHHHHH
Confidence            777777777666554

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.56  E-value=8.6e-14  Score=144.79  Aligned_cols=238  Identities=12%  Similarity=0.062  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccC---CcEEEEccCh-hhH
Q 014700          138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPV-QFS  212 (420)
Q Consensus       138 mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiVIlaVp~-~~l  212 (420)
                      ||..||.+|+++|  ++|.+|+|++++.+.+.+. +..          .++....++++++..   +|+||++||. ..+
T Consensus         1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v   68 (459)
T PRK09287          1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV   68 (459)
T ss_pred             CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence            8999999999999  9999999999999988773 210          135667788887764   8999999996 579


Q ss_pred             HHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHH
Q 014700          213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV  292 (420)
Q Consensus       213 ~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l  292 (420)
                      +++++++.+.+.++.+||.++|....++ ....+.+.+. |     +.++..|....+........+ +.+++++.++++
T Consensus        69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~si-M~GG~~~a~~~~  140 (459)
T PRK09287         69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPSI-MPGGQKEAYELV  140 (459)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCEE-EEeCCHHHHHHH
Confidence            9999999999999999999988544443 3333444332 2     346666655543322222334 456688999999


Q ss_pred             HHHHhcCCceE-------EEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH-HcCCChhhh
Q 014700          293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI  364 (420)
Q Consensus       293 ~~ll~~~g~~v-------~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~-a~Gi~~~t~  364 (420)
                      +++|+..+-++       .+.++.                 |...-+|+.+|.......+++.|+..+++ ++|++++.+
T Consensus       141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l  203 (459)
T PRK09287        141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI  203 (459)
T ss_pred             HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999866553       333332                 33344567778888888999999999999 589999888


Q ss_pred             hhcc-----ccch---hhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhh
Q 014700          365 TGLS-----GTGD---IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLL  417 (420)
Q Consensus       365 ~~l~-----g~gd---l~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~  417 (420)
                      .+..     |.+.   +..+......+|+..|.     ..++.++.+.+|-=+|.=|+...
T Consensus       204 ~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~-----~~~d~i~d~~~~~gtg~Wt~~~a  259 (459)
T PRK09287        204 ADVFAEWNKGELNSYLIEITADILRQKDEETGK-----PLVDVILDKAGQKGTGKWTSQSA  259 (459)
T ss_pred             HHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC-----cchHHhcCcccCCcHHHHHHHHH
Confidence            6533     2111   11122122233433222     34667777777766666555443

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.56  E-value=2.3e-13  Score=132.89  Aligned_cols=207  Identities=16%  Similarity=0.180  Sum_probs=129.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.+||..|.++|..++|++|+|+++.++.+.+.|..             ....+++++. ++|+||+||
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence            58999999999999999999988434799999999888777654421             1123566654 599999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC---CCeE--EEECcccHH-HHhhcCCeEEEE
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR---QPFI--ALSGPSFAL-ELMNKLPTAMVV  281 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~---~~~~--vl~GP~~a~-ev~~g~~t~i~i  281 (420)
                      |...+.++++++.+ ++++++|+++.  ...   ..+.+.+.+..+...   ++..  ...||..+. ....+....++.
T Consensus        67 p~~~~~~~~~~l~~-l~~~~iv~d~g--s~k---~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~  140 (275)
T PRK08507         67 PVDAIIEILPKLLD-IKENTTIIDLG--STK---AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD  140 (275)
T ss_pred             cHHHHHHHHHHHhc-cCCCCEEEECc--cch---HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence            99999999999988 88899888753  221   123333433221110   1110  112343332 233444332222


Q ss_pred             e-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHH-HHHHHHHhc--ccchhHHHHHHHHHHHHHHHHH
Q 014700          282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLA-IAAGIVVGM--NLGNNSMAALVAQGCSEIRWLA  354 (420)
Q Consensus       282 a-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~A-i~~G~~~gl--~lg~N~~~al~~~~~~E~~~lA  354 (420)
                      . ..+++.++.+.++|+..|.+++..+.-..++..+++.|+-. ++..+...+  .........+...+++.+.+++
T Consensus       141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tria  217 (275)
T PRK08507        141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRLA  217 (275)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhcc
Confidence            2 24667889999999999999888877666666666555321 122222222  1111223355566777766664

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.56  E-value=9.1e-14  Score=128.25  Aligned_cols=163  Identities=23%  Similarity=0.268  Sum_probs=107.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------C-CCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l-~~~i~a~td~~eal~~a  200 (420)
                      |||+|||+|.+|..+|..|+++|  |+|+.+|.++++++.+++ |..+.+.++..      + ..++.+++|.++++.++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence            79999999999999999999999  999999999999999987 43333444431      1 46789999999989999


Q ss_pred             cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhh-hHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLR-MMSQIIPQALRNPRQPFIALSGPSFAL  269 (420)
Q Consensus       201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~-~~se~l~~~lg~~~~~~~vl~GP~~a~  269 (420)
                      |++|+|||..          +++++++.|.++++++++||.-+ .+.+.+.+ .+..++.+.-+. ...+.+.+.|.+..
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S-TvppGtt~~~~~~ile~~~~~-~~~f~la~~PErl~  155 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES-TVPPGTTEELLKPILEKRSGK-KEDFHLAYSPERLR  155 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS-SSSTTHHHHHHHHHHHHHCCT-TTCEEEEE------
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc-EEEEeeehHhhhhhhhhhccc-ccCCeEEECCCccC
Confidence            9999999852          48889999999999988887665 47777655 444555554332 24677788888776


Q ss_pred             HH----hhcCCeEEEEecCCHHHHHHHHHH
Q 014700          270 EL----MNKLPTAMVVASKDRKLANAVQQL  295 (420)
Q Consensus       270 ev----~~g~~t~i~ia~~d~e~~~~l~~l  295 (420)
                      +.    ....+..++.+..+....++++++
T Consensus       156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l  185 (185)
T PF03721_consen  156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL  185 (185)
T ss_dssp             TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred             CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence            41    113455677777776665566654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.55  E-value=3.8e-13  Score=133.53  Aligned_cols=201  Identities=16%  Similarity=0.164  Sum_probs=133.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-------CCCCCCCC---CCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-------~~~~~l~~---~~l~~~i~a~td~~ea  196 (420)
                      +|||+|||+|.||++||..|+++|  ++|++|+++++.++.+.+.-       ....++++   ..+..++..+++++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a   79 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA   79 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence            479999999999999999999998  99999999988766543210       00011111   1223456788899988


Q ss_pred             ccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc
Q 014700          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (420)
Q Consensus       197 l~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g  274 (420)
                      +++||+||.|+|..  ....+++++.+..+++.++.+.+++...       ..+.+.+...  ...+...|-.+...   
T Consensus        80 ~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~---  147 (308)
T PRK06129         80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYL---  147 (308)
T ss_pred             hCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCccc---
Confidence            89999999999975  4667777887777777777665554432       2233433321  12233334332111   


Q ss_pred             CCeEEEEe---cCCHHHHHHHHHHHhcCCceEEEcC-ChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 014700          275 LPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (420)
Q Consensus       275 ~~t~i~ia---~~d~e~~~~l~~ll~~~g~~v~~s~-Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~  350 (420)
                      .+ .+.+.   +.+++.++++.++++..|..+++.. +..|.     +                .++    +....++|+
T Consensus       148 ~~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i----------------~nr----l~~a~~~EA  201 (308)
T PRK06129        148 IP-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----V----------------LNR----LQGALLREA  201 (308)
T ss_pred             Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----H----------------HHH----HHHHHHHHH
Confidence            11 12233   3678899999999999998877664 44331     1                111    234688999


Q ss_pred             HHHHHHcCCChhhhhhc
Q 014700          351 RWLATKMGAKPATITGL  367 (420)
Q Consensus       351 ~~lA~a~Gi~~~t~~~l  367 (420)
                      ..++++.|++++.+...
T Consensus       202 ~~l~~~g~~~~~~id~~  218 (308)
T PRK06129        202 FRLVADGVASVDDIDAV  218 (308)
T ss_pred             HHHHHcCCCCHHHHHHH
Confidence            99999999999888764

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.54  E-value=9.7e-13  Score=127.31  Aligned_cols=224  Identities=13%  Similarity=0.106  Sum_probs=145.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|||+|+||.+|+..|.++|.. .++.+|+|++++.+.+.+...            ++..+++.+++++++|+||+|
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence            5899999999999999999988721 246789999988877766421            134556788878899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~  286 (420)
                      +|++.+.++++++.  +.++++||++..|+..+       .+.+.++..  ...+...|+.......+ .+.  +...  
T Consensus        69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t~--~~~~--  132 (258)
T PRK06476         69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VTA--IYPP--  132 (258)
T ss_pred             eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-CeE--ecCC--
Confidence            99999999998873  45788999988777643       344444321  23466778766543322 222  2222  


Q ss_pred             HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                        .+.++++|+..|-.++..+.       +. .+.+....+           ..+.+...+.|+..++++.|++++....
T Consensus       133 --~~~~~~l~~~lG~~~~~~~e-------~~-~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~  191 (258)
T PRK06476        133 --DPFVAALFDALGTAVECDSE-------EE-YDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA  191 (258)
T ss_pred             --HHHHHHHHHhcCCcEEECCh-------Hh-ccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence              25789999998877654322       01 111111011           1223335788999999999999988776


Q ss_pred             cc-----ccchhhhhhcccCCCCccccccccCCCChHHHHHHc----CCcccccchhh
Q 014700          367 LS-----GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM----NQVLVNPSMQP  415 (420)
Q Consensus       367 l~-----g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~----~~~~eG~~t~~  415 (420)
                      +.     |...+..               ...+.++++..+++    |.+++|++..+
T Consensus       192 ~~~~~~~G~~~l~~---------------~~~~~~~~~l~~~v~spgGtT~~gl~~le  234 (258)
T PRK06476        192 YLAPLFASLAQDAV---------------RSTKTDFSALSREFSTKGGLNEQVLNDFS  234 (258)
T ss_pred             HHHHHHHHHHHHHH---------------hcCCCCHHHHHHhCCCCCchHHHHHHHHH
Confidence            42     3333310               13445666666665    45677766654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.52  E-value=1e-12  Score=136.41  Aligned_cols=214  Identities=14%  Similarity=0.206  Sum_probs=135.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+||| +|.||.++|..|.++|  ++|++|+|+++.++.+....             ++...+++++++.++|+||+|
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla   65 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS   65 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence            6999998 7999999999999998  89999999987765554431             123455777888999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEEEEe-c
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAMVVA-S  283 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i~ia-~  283 (420)
                      +|...+.++++++.++++++++|++++. +-.    ...+.+.+.++...  .....+.||..+  ...+....++.. +
T Consensus        66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~  138 (437)
T PRK08655         66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK  138 (437)
T ss_pred             cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence            9999999999999999999999988874 221    22344444443210  001122345432  233433322222 2


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHH-HHHcC
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWL-ATKMG  358 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~l-A~a~G  358 (420)
                      .+.+.+++++++|+..|.+++..+.-..+...   ..+.++++.+.+. ...+.+.......+...+++.+..+ .+-.+
T Consensus       139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~  218 (437)
T PRK08655        139 RSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILG  218 (437)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhc
Confidence            35788899999999999998877655554433   3344444444332 1222222223335566677776554 33335


Q ss_pred             CChhh
Q 014700          359 AKPAT  363 (420)
Q Consensus       359 i~~~t  363 (420)
                      .+|+.
T Consensus       219 ~~p~l  223 (437)
T PRK08655        219 QNPYL  223 (437)
T ss_pred             CCHHH
Confidence            55543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.49  E-value=1.1e-12  Score=130.18  Aligned_cols=179  Identities=16%  Similarity=0.196  Sum_probs=117.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.||.++|..|.++|..++|++|+|+++..+.+.+.|..            ....++++++++++|+||+|
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia   73 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC   73 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence            479999999999999999999987334899999999887777664421            12334667778899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE----------CcccHH-HHhhcC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS----------GPSFAL-ELMNKL  275 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~----------GP~~a~-ev~~g~  275 (420)
                      +|.....++++++.++++++++|+++. ++...    ..+.+.+.++.   ...++.          ||..+. ++..+.
T Consensus        74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~  145 (307)
T PRK07502         74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR  145 (307)
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence            999999999999988888888776653 33322    11223232221   111222          332221 344454


Q ss_pred             CeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHH---HHHHHHHHHHH
Q 014700          276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEI---AGALKNVLAIA  325 (420)
Q Consensus       276 ~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~---~~alkNv~Ai~  325 (420)
                      ...++. .+.+.+.++.+.++|+..|.+++..+.-..++.   .+.+.++++.+
T Consensus       146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~  199 (307)
T PRK07502        146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYT  199 (307)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHH
Confidence            433332 245678889999999999998877553333333   33444554443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.48  E-value=1.9e-13  Score=111.97  Aligned_cols=93  Identities=26%  Similarity=0.347  Sum_probs=76.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhccCCcEEEE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH  205 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG-~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~~aDiVIl  205 (420)
                      ||+|||+|+||.+++..|.++| ..++|.++ +|++++.+++.+..             ++.+.. +..++++.+|+||+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------------GVQATADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------------TTEEESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------------ccccccCChHHhhccCCEEEE
Confidence            7999999999999999999986 23689955 99999998887753             123444 67888999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |||++.+.++++++ +...+++++|++++|
T Consensus        68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            99999999999999 666789999999876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.46  E-value=1e-12  Score=133.29  Aligned_cols=182  Identities=18%  Similarity=0.259  Sum_probs=115.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      +||+|||+|.||.+||..|.++|  ++|.+|+++++..+.....+...        ..  ...+++++++++||+||+||
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~--------~~--~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGV--------ID--ELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCC--------Cc--ccccCHHHHhcCCCEEEEeC
Confidence            47999999999999999999998  89999998876544443332211        00  23356778889999999999


Q ss_pred             ChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-----CCeE--EEECcccHH-HHhhcCCeE
Q 014700          208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-----QPFI--ALSGPSFAL-ELMNKLPTA  278 (420)
Q Consensus       208 p~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~-----~~~~--vl~GP~~a~-ev~~g~~t~  278 (420)
                      |...+.++++++.+ .++++++|.++. ++...    +.+.+.+.++...     +++.  ..+||..+. +++.+.++.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i  143 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV  143 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence            99999999999987 477787665543 34322    1223333322110     1111  122333332 455666555


Q ss_pred             EEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHH---HHHHHHHHHH
Q 014700          279 MVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAG---ALKNVLAIAA  326 (420)
Q Consensus       279 i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~---alkNv~Ai~~  326 (420)
                      ++... .+.+.++.++++|+..|..++..+.-..+...+   .+.++++.+.
T Consensus       144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al  195 (359)
T PRK06545        144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL  195 (359)
T ss_pred             EecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence            44433 467888999999999998887654433444333   3445544433

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.46  E-value=1.7e-12  Score=127.61  Aligned_cols=168  Identities=13%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~ea  196 (420)
                      ++||+|||+|.||..+|..|+++|  ++|++||++++.++.+.+.       +.....+...   ....++..+++++++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            368999999999999999999998  9999999999988776542       1000000000   012356778889888


Q ss_pred             ccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHh
Q 014700          197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELM  272 (420)
Q Consensus       197 l~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~  272 (420)
                      +++||+||.|+|...  .+.++.++.+++++++++++.+.++.+..       +.+.+..+.  ....++ .|.+.    
T Consensus        79 ~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~----  146 (288)
T PRK09260         79 VADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHK----  146 (288)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCccc----
Confidence            999999999999754  45677888888888887755554566532       223322210  111233 44422    


Q ss_pred             hcCCeEEEEecC---CHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          273 NKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       273 ~g~~t~i~ia~~---d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                        .+ .+.+.+.   +++.++++.++++..|..+++..|..|
T Consensus       147 --~~-Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G  185 (288)
T PRK09260        147 --MK-LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG  185 (288)
T ss_pred             --Cc-eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence              12 2334333   789999999999999998888777544

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=121.12  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=116.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||+|+|+|+|+||.++|.+|+++|  |+|++-.|+. +..+...+. +.+          .++.. +++++.+.+|+||+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~~-l~~----------~i~~~-~~~dA~~~aDVVvL   66 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAAA-LGP----------LITGG-SNEDAAALADVVVL   66 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHHh-hcc----------ccccC-ChHHHHhcCCEEEE
Confidence            689999999999999999999999  9999986554 444433332 111          12222 56678899999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc----c------hhhhHHHHHHHHhCCCCCCeEEEECccc--HHHHhh
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPSF--ALELMN  273 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~----~------t~~~~se~l~~~lg~~~~~~~vl~GP~~--a~ev~~  273 (420)
                      +||..++.++++++...+. +++||+.+|.+..    .      .....++++++.++...    ++.+-++  +..+..
T Consensus        67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~  141 (211)
T COG2085          67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD  141 (211)
T ss_pred             eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence            9999999999999998876 8999999997531    1      12346788888877631    2222111  111111


Q ss_pred             ----cCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCCh
Q 014700          274 ----KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV  309 (420)
Q Consensus       274 ----g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di  309 (420)
                          +....+.++++|.+..+.+.++.+..||+......+
T Consensus       142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L  181 (211)
T COG2085         142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL  181 (211)
T ss_pred             CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence                123456678889999999999999999987754443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.44  E-value=6.1e-12  Score=123.68  Aligned_cols=169  Identities=21%  Similarity=0.281  Sum_probs=112.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc--CCCCCCCCCCC---------CCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQKL---------PENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g--~~~~~l~~~~l---------~~~i~a~td~~e  195 (420)
                      ++||+|||+|.||..+|..|+++|  ++|++|+++++.++++++.-  ....+.+...+         ..++..++|+++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            579999999999999999999998  99999999998776665421  01111111111         246778889998


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                      ++++||+||.|+|.+  ..+++++++.+.++++++|++.+.++.+.      + +.+.+..+ ..+..+  ..|.+    
T Consensus        81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~-~r~vg~Hf~~p~~----  148 (287)
T PRK08293         81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRP-EKFLALHFANEIW----  148 (287)
T ss_pred             HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCc-ccEEEEcCCCCCC----
Confidence            899999999999965  57888999999888888876655555432      2 22333221 111111  12211    


Q ss_pred             hhcCCeEEEE--ecCCHHHHHHHHHHHhcCCceEEEc-CChhH
Q 014700          272 MNKLPTAMVV--ASKDRKLANAVQQLLASKHLRISTS-SDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~i--a~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g  311 (420)
                        ..+...++  ...+++.++++.++++..|...... .|.-|
T Consensus       149 --~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg  189 (287)
T PRK08293        149 --KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG  189 (287)
T ss_pred             --cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence              11222222  2457889999999999999876554 46543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=99.42  E-value=4.9e-13  Score=118.45  Aligned_cols=115  Identities=18%  Similarity=0.305  Sum_probs=86.9

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~  209 (420)
                      |+|+|+|+||+.+|..|+++|  ++|+++.|++ +.+.+++.+.......+...........+..+....+|+||+|||+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            799999999999999999988  9999999999 8888888876433211111111112223332335789999999999


Q ss_pred             hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       210 ~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      .+++++++.+.+++.+++.|++++||+...      +.+.+.++
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~  115 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP  115 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence            999999999999999999999999999864      44555554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02256 arogenate dehydrogenase

Probab=99.42  E-value=1.3e-11  Score=122.30  Aligned_cols=211  Identities=16%  Similarity=0.145  Sum_probs=133.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVI  204 (420)
                      ..|||+|||+|.||.++|..|.+.|  ++|++|++++.. +...+.|              +...++.++++ .++|+||
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCEEE
Confidence            4689999999999999999999988  899999998632 2222222              22345777765 4799999


Q ss_pred             EccChhhHHHHHHHh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH----hhcCCeEE
Q 014700          205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL----MNKLPTAM  279 (420)
Q Consensus       205 laVp~~~l~~vl~~i-~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev----~~g~~t~i  279 (420)
                      +|||...+.++++++ .++++++++|+++..+=.     ...+.+.+.++.. .. .+..-|.++.+.    ..+.+..+
T Consensus        98 lavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~-----~~~~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~  170 (304)
T PLN02256         98 LCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKE-----FPKNLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVY  170 (304)
T ss_pred             EecCHHHHHHHHHhhhhhccCCCCEEEecCCchH-----HHHHHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEE
Confidence            999999999999998 677888999988865211     1233445544321 11 122224333332    22322111


Q ss_pred             E----E-ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 014700          280 V----V-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR  351 (420)
Q Consensus       280 ~----i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~  351 (420)
                      .    + ...+++..+.+.++++..|.+++..+--..++..++   +.++++.+....  . ..   ...+...+++.+.
T Consensus       171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~--~-~~---~~~~~~~gfrd~t  244 (304)
T PLN02256        171 DKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKM--E-LE---STPINTKGYETLL  244 (304)
T ss_pred             ecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHc--C-Cc---ccccccccHHHHH
Confidence            1    0 123567889999999999999887765555554433   444444333221  1 11   1355677899999


Q ss_pred             HHHHH-cCCChhhhhh
Q 014700          352 WLATK-MGAKPATITG  366 (420)
Q Consensus       352 ~lA~a-~Gi~~~t~~~  366 (420)
                      +++.. +..+|+...+
T Consensus       245 ria~r~~~~~p~lw~d  260 (304)
T PLN02256        245 RLVENTSSDSFDLYYG  260 (304)
T ss_pred             HHHHhhcCCCHHHHHH
Confidence            99864 4566654333

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.41  E-value=9.2e-12  Score=122.62  Aligned_cols=170  Identities=15%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCC-CCCCCCCC--------CCceEEeCCHH
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNC-RYFPEQKL--------PENVIATTDAK  194 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~-~~l~~~~l--------~~~i~a~td~~  194 (420)
                      +..+||+|||+|.||..||..|+++|  ++|++|+++++.++.+.+. ..+. .+.+...+        ..++..+++++
T Consensus         2 ~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   79 (292)
T PRK07530          2 MAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE   79 (292)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence            34679999999999999999999998  9999999999877664321 0000 00111111        13467777875


Q ss_pred             HhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC--CeEEEECcccHHH
Q 014700          195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ--PFIALSGPSFALE  270 (420)
Q Consensus       195 eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~--~~~vl~GP~~a~e  270 (420)
                      + +++||+||+|+|..  ..+.+++++.+.++++++|++.+.++...       .+.+.+..+..  .+.++. |.....
T Consensus        80 ~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~~~-p~~~~~  150 (292)
T PRK07530         80 D-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHFMN-PVPVMK  150 (292)
T ss_pred             H-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeeccC-CcccCc
Confidence            4 78999999999964  46777889999999999988777676542       23333322100  111111 222111


Q ss_pred             HhhcCCeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700          271 LMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT  310 (420)
Q Consensus       271 v~~g~~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~  310 (420)
                         .  ..++. .+.+++.++++.++|+..|..+++..|.-
T Consensus       151 ---~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p  186 (292)
T PRK07530        151 ---L--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP  186 (292)
T ss_pred             ---e--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence               1  11222 24678999999999999998888777764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.41  E-value=8.5e-12  Score=127.22  Aligned_cols=192  Identities=16%  Similarity=0.217  Sum_probs=127.7

Q ss_pred             ccchhhhchhcceeccccccccc-cchhhcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC
Q 014700           97 RRKIVKVAWEKLVRWSRTWRSKA-KTDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN  174 (420)
Q Consensus        97 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~  174 (420)
                      +....+.-|...+.++++.+.+. ...+++.+++|+||| +|.||..+|..|.++|  ++|++|+|++.           
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~-----------  133 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW-----------  133 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc-----------
Confidence            44445556777777776555543 445666789999999 9999999999999998  99999998531           


Q ss_pred             CCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       175 ~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                                      +++++++.+||+||+|+|.....++++++.+ ++++++|++++. +-..    +.+.+.+.++.
T Consensus       134 ----------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~~----~~~~~~~~~~~  191 (374)
T PRK11199        134 ----------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKNA----PLQAMLAAHSG  191 (374)
T ss_pred             ----------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccHH----HHHHHHHhCCC
Confidence                            1455667899999999999999999999988 889999988753 2211    12233333322


Q ss_pred             CCCCeEEEECcccHHHHhhcCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHH
Q 014700          255 PRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAG  327 (420)
Q Consensus       255 ~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G  327 (420)
                      .......+.||....  ..+  ..+++.. .+++.++.+.++++..|.+++..+.-.+++..++   +.|+++++.+
T Consensus       192 ~fvg~HPm~G~~~~~--~~~--~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~  264 (374)
T PRK11199        192 PVLGLHPMFGPDVGS--LAK--QVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYG  264 (374)
T ss_pred             CEEeeCCCCCCCCcc--cCC--CEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111122345554321  122  2233443 3567789999999999999888776555554443   4455544433

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.41  E-value=8.9e-12  Score=122.13  Aligned_cols=171  Identities=16%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-----------i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      ++||+|||+|.||..+|..|+++|  ++|+++|++++.+++           +.+.|.... ........++..+++.++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~-~~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE-ADKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhCeEEeCCHHH
Confidence            568999999999999999999998  899999999987643           222221000 000001125677778765


Q ss_pred             hccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhh
Q 014700          196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN  273 (420)
Q Consensus       196 al~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~  273 (420)
                       +++||+||+|+|.+.  ..++++++.++++++++|++.+.|+..+       .+.+.++.+ ..+ +..-|..+..+..
T Consensus        80 -~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~-~r~-ig~h~~~P~~~~~  149 (282)
T PRK05808         80 -LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRP-DKV-IGMHFFNPVPVMK  149 (282)
T ss_pred             -hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCC-cce-EEeeccCCcccCc
Confidence             789999999998643  4689999999999999998888887653       233433322 111 1112222211111


Q ss_pred             cCCeEEEE-ecCCHHHHHHHHHHHhcCCceEEEcCChhHH
Q 014700          274 KLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGV  312 (420)
Q Consensus       274 g~~t~i~i-a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~  312 (420)
                      .. . ++. .+.+++..+.+.++|+..|..+....|..|.
T Consensus       150 ~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~  187 (282)
T PRK05808        150 LV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGF  187 (282)
T ss_pred             cE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccCh
Confidence            11 1 221 2457899999999999999988877776553

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.41  E-value=6.2e-12  Score=123.84  Aligned_cols=181  Identities=19%  Similarity=0.226  Sum_probs=117.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh------cCC----CCCCCCC---CCCCceEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCN----CRYFPEQ---KLPENVIATTDA  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~------g~~----~~~l~~~---~l~~~i~a~td~  193 (420)
                      ++||+|||+|.||..+|..|+.+|  ++|++||++++.++...+.      +..    ...+...   .+..++..+++.
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence            469999999999999999999998  8999999999877643321      000    0000000   012345666777


Q ss_pred             HHhccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHH
Q 014700          194 KTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFAL  269 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~  269 (420)
                       +++++||+||+|+|.+.  .+++++++.+++++++++++.++|+...       .+.+.+..+ ..+.-  ..-|....
T Consensus        81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~-~r~ig~hf~~P~~~~  151 (291)
T PRK06035         81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERK-DRFIGMHWFNPAPVM  151 (291)
T ss_pred             -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCc-ccEEEEecCCCcccC
Confidence             46799999999999764  7888899999899999999988887643       233333221 11111  11121111


Q ss_pred             HHhhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHH
Q 014700          270 ELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLA  323 (420)
Q Consensus       270 ev~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~A  323 (420)
                      .    . ..++-+ ..+++.++++.++++..|..+....|.-|-...+++.|.+.
T Consensus       152 ~----~-vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~  201 (291)
T PRK06035        152 K----L-IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLL  201 (291)
T ss_pred             c----c-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHH
Confidence            1    0 111111 23688899999999999999888888766544444444433

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.40  E-value=3.7e-11  Score=118.52  Aligned_cols=171  Identities=18%  Similarity=0.260  Sum_probs=110.7

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------HhcCCCCCCCCCCCCCceEEeCC
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTD  192 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~-----------~~g~~~~~l~~~~l~~~i~a~td  192 (420)
                      |..++||+|||+|.||..||..|+.+|  ++|++|+++++.++...           +.|...... -......+...++
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~   77 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEE-ADATLGRIRCTTN   77 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhceEeeCC
Confidence            345679999999999999999999998  99999999987765322           111100000 0000113455566


Q ss_pred             HHHhccCCcEEEEccC--hhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccH
Q 014700          193 AKTALLGADYCLHAMP--VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFA  268 (420)
Q Consensus       193 ~~eal~~aDiVIlaVp--~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a  268 (420)
                      .+ ++++||+||.|||  .+....++.++.+.++++++|++.+.|+....       +.+.++.+.  ..+.++..|.. 
T Consensus        78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~-  148 (295)
T PLN02545         78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI-  148 (295)
T ss_pred             HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence            64 5799999999999  55577788888888889998887777776532       233332210  01112222221 


Q ss_pred             HHHhhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          269 LELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       269 ~ev~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                           .....++.+ ..+++.+++++++|+..|..+.+..|..|
T Consensus       149 -----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g  187 (295)
T PLN02545        149 -----MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG  187 (295)
T ss_pred             -----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc
Confidence                 111222222 34788899999999999998888777654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.37  E-value=3.3e-11  Score=117.94  Aligned_cols=220  Identities=15%  Similarity=0.184  Sum_probs=131.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH-HHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~-~eal~~aDiVIl  205 (420)
                      +|+|+|+|+|.||..+|..|.++|  +.|.+++++...........+...+          ..+.+. .+++.++|+||+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~d----------~~~~~~~~~~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVID----------ELTVAGLAEAAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCccc----------ccccchhhhhcccCCEEEE
Confidence            689999999999999999999999  7887776665432222222111111          111222 456778999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |||-..+.++++++.++++++++|..++. +-    ..+.+.+.+..+..  ....--+.||.--.+...+....++...
T Consensus        71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~K----~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~  145 (279)
T COG0287          71 AVPIEATEEVLKELAPHLKKGAIVTDVGS-VK----SSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE  145 (279)
T ss_pred             eccHHHHHHHHHHhcccCCCCCEEEeccc-cc----HHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence            99999999999999999999999987753 21    12334455544331  1111123555311123344433222222


Q ss_pred             -CCHHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHcC
Q 014700          284 -KDRKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWLATKMG  358 (420)
Q Consensus       284 -~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~lA~a~G  358 (420)
                       .+.+.++++.++++..|-+++..+.-.+++..   ..|.|+++.+.+. ......-......+..-+++.+.++   .+
T Consensus       146 ~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRi---a~  222 (279)
T COG0287         146 GTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRI---AS  222 (279)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHH---Hc
Confidence             34678899999999999888887655555543   4456666665543 2222211111234455566644444   35


Q ss_pred             CChhhhhh
Q 014700          359 AKPATITG  366 (420)
Q Consensus       359 i~~~t~~~  366 (420)
                      .+|+...+
T Consensus       223 ~~P~m~~d  230 (279)
T COG0287         223 SDPEMYAD  230 (279)
T ss_pred             CChHHHHH
Confidence            56654443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.37  E-value=6.4e-11  Score=118.13  Aligned_cols=149  Identities=14%  Similarity=0.136  Sum_probs=102.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i-~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|+|||+|+||.++|..|.+.|  ++|++++++....... .+.|              +... +++++++.||+|++
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVvL   79 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIMI   79 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEEE
Confidence            479999999999999999999998  8999888765433332 2222              2222 77888999999999


Q ss_pred             ccChhhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-------HhhcCCe
Q 014700          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLPT  277 (420)
Q Consensus       206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-------v~~g~~t  277 (420)
                      +||+....+++ +++.++++++++| ++.-|+....       .....+.. .+ .+...|+.+.+       ...|.+.
T Consensus        80 aVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~~-~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~  149 (330)
T PRK05479         80 LLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPAD-VD-VIMVAPKGPGHLVRREYEEGGGVPC  149 (330)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCCC-Cc-EEEeCCCCCchhhhhhhhcCCCceE
Confidence            99998889998 7899999988877 6667876532       12222221 22 34555776654       3344443


Q ss_pred             EEEEec-CCHHHHHHHHHHHhcCCce
Q 014700          278 AMVVAS-KDRKLANAVQQLLASKHLR  302 (420)
Q Consensus       278 ~i~ia~-~d~e~~~~l~~ll~~~g~~  302 (420)
                      .+.+.. .+.+..+.+..++...|..
T Consensus       150 l~av~~d~t~~a~~~a~~l~~aiG~~  175 (330)
T PRK05479        150 LIAVHQDASGNAKDLALAYAKGIGGT  175 (330)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            331222 2367778888899887654

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.34  E-value=8.4e-11  Score=117.04  Aligned_cols=149  Identities=16%  Similarity=0.184  Sum_probs=105.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||+|||+|+||.++|..|.++|  ++|+++++. .+..+.+.+.|              +... +.+++++.||+|++
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~G--------------v~~~-s~~ea~~~ADiVvL   65 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDG--------------FKVG-TVEEAIPQADLIMN   65 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCC--------------CEEC-CHHHHHhcCCEEEE
Confidence            479999999999999999999998  788776654 34444444433              2333 57788899999999


Q ss_pred             ccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-H------hhcCCe
Q 014700          206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT  277 (420)
Q Consensus       206 aVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-v------~~g~~t  277 (420)
                      ++|++ +...+++++.+.++++. +|++.-|+....       +...++.. . -.+...|+.+.+ +      ..|.+.
T Consensus        66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~-------~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~  135 (314)
T TIGR00465        66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHF-------VQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT  135 (314)
T ss_pred             eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhh-------ccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence            99988 77777788988887775 788888987542       33344431 1 256788887776 3      445443


Q ss_pred             EEEEe-cCCHHHHHHHHHHHhcCCce
Q 014700          278 AMVVA-SKDRKLANAVQQLLASKHLR  302 (420)
Q Consensus       278 ~i~ia-~~d~e~~~~l~~ll~~~g~~  302 (420)
                      .+.+. ..+.+..+.+..+|+..|..
T Consensus       136 l~a~~~~~~~~~~~~~~~~~~~iG~~  161 (314)
T TIGR00465       136 LIAVEQDPTGEAMAIALAYAKAIGGG  161 (314)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            32222 23566778899999988766

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.34  E-value=4.4e-11  Score=126.21  Aligned_cols=164  Identities=15%  Similarity=0.207  Sum_probs=109.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-----------hcCCCCCCCCC---CCCCceEEeC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQ---KLPENVIATT  191 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-----------~g~~~~~l~~~---~l~~~i~a~t  191 (420)
                      ..+||+|||+|.||..||..|+++|  ++|++|+++++.+++..+           .|.    +...   ....+++.++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~----~~~~~~~~~~~~i~~~~   77 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGK----LTAEECERTLKRLIPVT   77 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHhccEEeC
Confidence            3579999999999999999999999  999999999988765322           111    0000   1224577888


Q ss_pred             CHHHhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECccc
Q 014700          192 DAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSF  267 (420)
Q Consensus       192 d~~eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~  267 (420)
                      ++++ +.+||+||.|+|..  ..+.++.++..+.+++++|.+-+.++...       .+.+.+..+.  ..+.++ .|..
T Consensus        78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~-------~iA~~~~~p~r~~G~HFf-~Pap  148 (503)
T TIGR02279        78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT-------AIAAGLARPERVAGLHFF-NPAP  148 (503)
T ss_pred             CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH-------HHHHhcCcccceEEEecc-Cccc
Confidence            9876 67999999999953  35566777888888888877666556542       1233333211  111122 2211


Q ss_pred             HHHHhhcCCeEEEEecC---CHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          268 ALELMNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       268 a~ev~~g~~t~i~ia~~---d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                      ..       ..+.+.++   +++.++++.++++..|...++..|..|
T Consensus       149 v~-------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG  188 (503)
T TIGR02279       149 VM-------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG  188 (503)
T ss_pred             cC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC
Confidence            11       12333333   789999999999999998888777554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.33  E-value=1.2e-10  Score=123.13  Aligned_cols=168  Identities=17%  Similarity=0.209  Sum_probs=109.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i-----------~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      ..+||+|||+|.||..||..|+.+|  ++|++||++++.+++.           .+.|.-.. ......-.++..+++++
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~-~~~~~~~~~i~~~~~~~   82 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTA-EQADAALARLRPVEALA   82 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHhCeEEeCCHH
Confidence            3578999999999999999999999  9999999999877663           22221000 00001123467788887


Q ss_pred             HhccCCcEEEEccChh-h-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHH
Q 014700          195 TALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALE  270 (420)
Q Consensus       195 eal~~aDiVIlaVp~~-~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~e  270 (420)
                      + +.+||+||.||+.. . .+.++.++....++++++.+-+.++.++       .+.+.+..+.  ..+.++. |.... 
T Consensus        83 ~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~hff~-Pa~v~-  152 (507)
T PRK08268         83 D-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLHFFN-PVPLM-  152 (507)
T ss_pred             H-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEeecC-CcccC-
Confidence            6 67999999999954 3 4445577777778888887655567653       2333332210  1112222 22211 


Q ss_pred             HhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          271 LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       271 v~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                           +-..++.+  .+++.++++.++++..|...++..|..|
T Consensus       153 -----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG  190 (507)
T PRK08268        153 -----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG  190 (507)
T ss_pred             -----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC
Confidence                 11222332  4788999999999999988887777544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.32  E-value=2.1e-10  Score=114.51  Aligned_cols=171  Identities=15%  Similarity=0.194  Sum_probs=111.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh---c---CCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---H---CNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~---g---~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      .++||+|||+|.||..||..|+.+|  ++|++||++++..+.+.+.   .   .....+.......++..++++++++.+
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~   83 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD   83 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence            3579999999999999999999998  9999999998765543221   0   000001111123467778899999999


Q ss_pred             CcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHHhhcC
Q 014700          200 ADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALELMNKL  275 (420)
Q Consensus       200 aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev~~g~  275 (420)
                      ||+||.|+|..  .-+.+++++..+++++++|.+.+.++...       .+.+.+..+ ..+...  ..|.+...     
T Consensus        84 aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p-~R~~g~HffnP~~~~p-----  150 (321)
T PRK07066         84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHP-ERCVVGHPFNPVYLLP-----  150 (321)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCc-ccEEEEecCCccccCc-----
Confidence            99999999953  35667788999999999777666655432       233434332 122221  22322211     


Q ss_pred             CeEEEEe-cCCHHHHHHHHHHHhcCCceEEEc-CChhH
Q 014700          276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTS-SDVTG  311 (420)
Q Consensus       276 ~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g  311 (420)
                      ..-++.+ ..+++.++.+.++++..|...+.. .|+-|
T Consensus       151 LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG  188 (321)
T PRK07066        151 LVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG  188 (321)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc
Confidence            0112222 246889999999999999776665 57654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.31  E-value=7.2e-11  Score=130.34  Aligned_cols=165  Identities=16%  Similarity=0.135  Sum_probs=109.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.||.+++..|.++|..++|++|+|+++..+.+.+.|...            ...++.++++.++|+||+|
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence            4789999999999999999999873358999999998877766644210            1234677778899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCe---EEEECcc-----cHH-HHhhcCCe
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF---IALSGPS-----FAL-ELMNKLPT  277 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~---~vl~GP~-----~a~-ev~~g~~t  277 (420)
                      +|.+.++++++++.++++++++|+.+. ++....    .+.+.+.++.....+   ..+.|+.     .+. +...+...
T Consensus        71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~  145 (735)
T PRK14806         71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV  145 (735)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence            999999999999999888777766554 444222    223333332210000   0112222     111 23344444


Q ss_pred             EEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          278 AMVVA-SKDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       278 ~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                      .++.. ..+++..+.+.++|+..|..++..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~  177 (735)
T PRK14806        146 ILTPLAETDPAALARVDRLWRAVGADVLHMDV  177 (735)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            34332 34677889999999999987766543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.27  E-value=1.9e-10  Score=113.26  Aligned_cols=169  Identities=14%  Similarity=0.194  Sum_probs=108.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------HhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~-----------~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      +.||+|||+|.||..||..|+.+|  ++|++||++++.++...           +.|.... ........+++.++|++ 
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~l~~~~~~~-   80 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE-RERDAALARLRFTTDLG-   80 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCCh-hhHHHHHhCeEeeCCHH-
Confidence            469999999999999999999998  99999999998766522           2221000 00001124677888985 


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcC-CCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHHH
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALE  270 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l-~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~e  270 (420)
                      ++++||+||.|+|..  ..+.++.++..++ ++++++++.+.++....       +.+....+ ..+.  -+..|.+.. 
T Consensus        81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~-~r~~g~hf~~P~~~~-  151 (286)
T PRK07819         81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRP-GRVLGLHFFNPVPVL-  151 (286)
T ss_pred             HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCC-ccEEEEecCCCcccC-
Confidence            479999999999954  3556667777777 78999988887666432       22322221 1111  112222111 


Q ss_pred             HhhcCCeEEEEecCCHHHHHHHHHHHh-cCCceEEEcCChhH
Q 014700          271 LMNKLPTAMVVASKDRKLANAVQQLLA-SKHLRISTSSDVTG  311 (420)
Q Consensus       271 v~~g~~t~i~ia~~d~e~~~~l~~ll~-~~g~~v~~s~Di~g  311 (420)
                         +....+.....+++.++++.+++. ..|..+....|..|
T Consensus       152 ---~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG  190 (286)
T PRK07819        152 ---PLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG  190 (286)
T ss_pred             ---ceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC
Confidence               111222223567899999999987 47877776677544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.24  E-value=1.8e-11  Score=106.14  Aligned_cols=100  Identities=25%  Similarity=0.283  Sum_probs=67.0

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ....+||+|||+|++|.+++..|.++|  |.|.. ++|+++..+++...      +++       ....++++.+.++|+
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~------~~~-------~~~~~~~~~~~~aDl   71 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAF------IGA-------GAILDLEEILRDADL   71 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--------TT------------TTGGGCC-SE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCcccccccccc------ccc-------ccccccccccccCCE
Confidence            344689999999999999999999999  88875 57887666665542      111       122356677899999


Q ss_pred             EEEccChhhHHHHHHHhhhc--CCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDY--VDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~--l~~~~iVVs~snGi~~  238 (420)
                      +|++||++.+.+++++|...  ..++++|+.++-.+..
T Consensus        72 v~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~~  109 (127)
T PF10727_consen   72 VFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALGS  109 (127)
T ss_dssp             EEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred             EEEEechHHHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence            99999999999999999877  7789999998844443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.20  E-value=2.8e-10  Score=104.56  Aligned_cols=164  Identities=22%  Similarity=0.336  Sum_probs=102.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-------CCCCCCC---CCCCCceEEeCCHHHhcc
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-------NCRYFPE---QKLPENVIATTDAKTALL  198 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-------~~~~l~~---~~l~~~i~a~td~~eal~  198 (420)
                      ||+|||+|.||..+|..++.+|  ++|++||++++.++...+.-.       ....+..   .....++..++|++++. 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence            7999999999999999999998  999999999986544332100       0000000   01124678899999876 


Q ss_pred             CCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHHHHhhc
Q 014700          199 GADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELMNK  274 (420)
Q Consensus       199 ~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~ev~~g  274 (420)
                      +||+||-|+|.  ..-++++.++..++++++++.+.+.++...       .+.+.+..+ ..+.  -+..|.+...+   
T Consensus        78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~-------~la~~~~~p-~R~ig~Hf~~P~~~~~l---  146 (180)
T PF02737_consen   78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS-------ELAAALSRP-ERFIGMHFFNPPHLMPL---  146 (180)
T ss_dssp             TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH-------HHHTTSSTG-GGEEEEEE-SSTTT--E---
T ss_pred             hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH-------HHHhccCcC-ceEEEEecccccccCce---
Confidence            99999999995  457889999999999999998888777653       233333332 1221  12334433211   


Q ss_pred             CCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          275 LPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       275 ~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                        .-++.+ ..+++.++++..+++..|.......|
T Consensus       147 --VEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  147 --VEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             --EEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred             --EEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence              112222 34688999999999999988776655

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02712 arogenate dehydrogenase

Probab=99.17  E-value=3.6e-09  Score=115.25  Aligned_cols=177  Identities=12%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .|||+|||+|.||.++|..|.+.|  ++|.+|+|+... +...+.|              +...+++++++ .++|+||+
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvViL  114 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVILL  114 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEEE
Confidence            579999999999999999999988  899999998543 3333322              23455777744 56999999


Q ss_pred             ccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          206 AMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       206 aVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |||...+.++++++. ++++++++|+++.. +-    ..+.+.+.+.++...  ...--+.||.....-..+..  +++.
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~S-vK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~~  187 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRNTLFVDVLS-VK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVYE  187 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCCeEEEECCC-Cc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEEe
Confidence            999999999999986 67888999998852 22    123344555543210  11112345553222122332  2222


Q ss_pred             ----cCC---HHHHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHHH
Q 014700          283 ----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAAG  327 (420)
Q Consensus       283 ----~~d---~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~G  327 (420)
                          +.+   .+.++.+.++++..|.+++..+.-..+++.   ..|.|+++....
T Consensus       188 ~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~  242 (667)
T PLN02712        188 KVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLE  242 (667)
T ss_pred             eccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222   245677789999999998877654444443   345555554443

>PLN02712 arogenate dehydrogenase

Probab=99.16  E-value=1.7e-09  Score=117.78  Aligned_cols=164  Identities=17%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVI  204 (420)
                      ..|||+|||+|.||.++|..|.+.|  ++|.+|+|+.+. +...+.|              +...+++++++. .+|+||
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVI  430 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVIL  430 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEE
Confidence            3589999999999999999999988  899999998643 3333322              234457777664 589999


Q ss_pred             EccChhhHHHHHHHhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE-ECcccHHHHh-hc---CCe-
Q 014700          205 HAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELM-NK---LPT-  277 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~-~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl-~GP~~a~ev~-~g---~~t-  277 (420)
                      +|||...+.++++++.. .++++++|++++.+-.     ...+.+.+.++..   ..++ .-|.++.+.. .|   .+. 
T Consensus       431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~---~~~v~~HPm~G~e~~~~G~~~~~~l  502 (667)
T PLN02712        431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQD---FDILCTHPMFGPESGKNGWNNLAFV  502 (667)
T ss_pred             ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCC---CceEeeCCCCCccccccchhhhhhh
Confidence            99999999999998875 6788999999864311     1223444444321   1122 2233322211 01   110 


Q ss_pred             --EEEEecC--CHHHHHHHHHHHhcCCceEEEcCChhHHHH
Q 014700          278 --AMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEI  314 (420)
Q Consensus       278 --~i~ia~~--d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~  314 (420)
                        ...+.+.  ..+.++.+.++++..|.+++..+--..++.
T Consensus       503 f~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~  543 (667)
T PLN02712        503 FDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWH  543 (667)
T ss_pred             ccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHH
Confidence              0112221  234566777999999998877654444443

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.16  E-value=2.5e-09  Score=105.20  Aligned_cols=208  Identities=16%  Similarity=0.143  Sum_probs=124.2

Q ss_pred             CeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHHhcCCCCCCCCCC
Q 014700          128 NKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK  182 (420)
Q Consensus       128 mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~~~-----~~i~~~g~~~~~l~~~~  182 (420)
                      |||.|.|+|+                    -|.+||.+|+++|  |+|++|+|+++..     +.+.+.|          
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG----------   68 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG----------   68 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence            6889999987                    4889999999999  9999999987644     3455543          


Q ss_pred             CCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCe
Q 014700          183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPF  259 (420)
Q Consensus       183 l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l--g~~~~~~  259 (420)
                          +.+.+++.++++++|+||+|+|.. +++++++.+.+.++++++||.++. +++++   +...+.+.+  +..  ++
T Consensus        69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~ST-IsP~t---~~~~~e~~l~~~r~--d~  138 (341)
T TIGR01724        69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCT-VSPVV---LYYSLEKILRLKRT--DV  138 (341)
T ss_pred             ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCC-CCHHH---HHHHHHHHhhcCcc--cc
Confidence                355668889999999999999965 588998889899999999999875 66653   233343322  221  11


Q ss_pred             EEEEC-----cccHHH---HhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEc-CChhHHH--HHHHHHHHHHHHHHH
Q 014700          260 IALSG-----PSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS-SDVTGVE--IAGALKNVLAIAAGI  328 (420)
Q Consensus       260 ~vl~G-----P~~a~e---v~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e--~~~alkNv~Ai~~G~  328 (420)
                      .+.+-     |....+   +..+... .--+-.+++..+++.++.++.+...+.. .|+.+..  ++.++--+  ...|+
T Consensus       139 ~v~s~HP~~vP~~~~~~~~~~~~~~~-~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~--~~~gi  215 (341)
T TIGR01724       139 GISSMHPAAVPGTPQHGHYVIGGKPT-AGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAV--ALAGV  215 (341)
T ss_pred             CeeccCCCCCCCCCCCceeeeccccc-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHH
Confidence            11111     222111   0011110 0001135788899999999987776653 3443321  22221111  12233


Q ss_pred             HHhcccc-------hhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          329 VVGMNLG-------NNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       329 ~~gl~lg-------~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      ++-...+       ....-..+...+.-+..|-+..|++
T Consensus       216 l~y~~~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~  254 (341)
T TIGR01724       216 LDYYYVGTQIINAPKEMIEKQILMTLQTMASLVETSGVE  254 (341)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3222111       1112233455666677777777764

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2.3e-09  Score=100.65  Aligned_cols=148  Identities=8%  Similarity=0.139  Sum_probs=105.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh---ccCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea---l~~aDiVI  204 (420)
                      |+|+.||+|.||..|..+|.+.|  |+|..||++++.++++...+.              +..+++++.   +...-+|-
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW   64 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW   64 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence            79999999999999999999998  999999999999999988753              223345544   45678999


Q ss_pred             EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      +.||.. .+.++++++.+++.++.+||.--|.--.++.+.. +.+.+. |....++....|+-     ......++++++
T Consensus        65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiGG  137 (300)
T COG1023          65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIGG  137 (300)
T ss_pred             EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEecC
Confidence            999975 7999999999999999999987765444433222 222221 22112222222221     112334566655


Q ss_pred             CCHHHHHHHHHHHhcC
Q 014700          284 KDRKLANAVQQLLASK  299 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~  299 (420)
                       +.+.+++++++|...
T Consensus       138 -~~~a~~~~~pif~~l  152 (300)
T COG1023         138 -DEEAVERLEPIFKAL  152 (300)
T ss_pred             -cHHHHHHHHHHHHhh
Confidence             788999999999874

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.10  E-value=1.8e-09  Score=109.67  Aligned_cols=166  Identities=13%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+||+|||. |.||..+|..|.+.. +++|+.+|+.++                         ...++++++++||+||
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi   56 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLI   56 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence            4579999999 999999999999752 389999998521                         1125677789999999


Q ss_pred             EccChhhHHHHHHHhhhc---CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          205 HAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~---l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      +|||...+.++++++.++   ++++++|..+.. +-.    .+.+.+.+. +.......-+.||... ..+++....++ 
T Consensus        57 lavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK~----~i~~~~~~~-~~~fVG~HPMaG~E~s-~lf~g~~~ilt-  128 (370)
T PRK08818         57 FSAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IKQ----APVAAMLAS-QAEVVGLHPMTAPPKS-PTLKGRVMVVC-  128 (370)
T ss_pred             EeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-CcH----HHHHHHHhc-CCCEEeeCCCCCCCCC-cccCCCeEEEe-
Confidence            999999999999999876   789999987652 211    111222121 1110011123444322 23445543332 


Q ss_pred             ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHH---HHHHHHH
Q 014700          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL---KNVLAIA  325 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~al---kNv~Ai~  325 (420)
                      .....+..+.++++++..|.+++..+--.+++..+.+   .|+.+++
T Consensus       129 p~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~  175 (370)
T PRK08818        129 EARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLA  175 (370)
T ss_pred             CCCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence            2334455688999999999998877665666655554   4654443

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.08  E-value=2.5e-08  Score=96.06  Aligned_cols=173  Identities=16%  Similarity=0.154  Sum_probs=118.4

Q ss_pred             CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          153 LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       153 ~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ++|.+++|++++.+.+.+..             ++.++.+.++++.++|+||+|||++.++++++++.+.+.++++||++
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~   76 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISI   76 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEe
Confidence            78999999998887776531             23455677787889999999999999999999998877778899999


Q ss_pred             ccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          233 SKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       233 snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                      ..|+..+       .+.+.++..  .-.+...|+.+..+..+. +.+..+. .+++..+.++++|+..|..+...++...
T Consensus        77 ~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~  146 (245)
T TIGR00112        77 AAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEALMD  146 (245)
T ss_pred             cCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcc
Confidence            9999864       355666532  235778999887776553 3333332 3566778999999999988776544321


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700          312 VEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL  367 (420)
Q Consensus       312 ~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l  367 (420)
                      .         +....|.          ..+++...+..+..-+.+.|++++....+
T Consensus       147 ~---------~talsgs----------gPA~~~~~~~al~~~~v~~Gl~~~~A~~l  183 (245)
T TIGR00112       147 A---------VTALSGS----------GPAYVFLFIEALADAGVKQGLPRELALEL  183 (245)
T ss_pred             h---------HHhhccC----------cHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            1         1111110          12333444455555677778877765553

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.01  E-value=2.7e-09  Score=107.14  Aligned_cols=121  Identities=19%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|+    |.+   ...+.++.  .|+|+|||+|.||.++|..|...|  ++|.+|+|+++.....  
T Consensus       119 R~~~~~~~~~~~~~~~----w~~---~~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~~G--~~V~~~d~~~~~~~~~--  185 (330)
T PRK12480        119 RRFPDIERRVQAHDFT----WQA---EIMSKPVK--NMTVAIIGTGRIGAATAKIYAGFG--ATITAYDAYPNKDLDF--  185 (330)
T ss_pred             HhHHHHHHHHHhCCcc----ccc---ccCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCChhHhhhh--
Confidence            5555667777777662    542   11222333  679999999999999999999887  9999999987532110  


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                                      +...+++++++++||+|++++|... ...++ +++.+.++++.++|++++|-..++
T Consensus       186 ----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~  241 (330)
T PRK12480        186 ----------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINT  241 (330)
T ss_pred             ----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCH
Confidence                            1123478899999999999999654 44444 567788899999999999987664

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.99  E-value=7.5e-09  Score=102.19  Aligned_cols=170  Identities=20%  Similarity=0.270  Sum_probs=109.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc---C----CCCCCCCC---CCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g---~----~~~~l~~~---~l~~~i~a~td~~e  195 (420)
                      .++||+|||+|.||+.+|..++.+|  ++|+++|++++.+++....-   +    ....+...   ..-.++..++++. 
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-   78 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-   78 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence            3689999999999999999999977  99999999977544332110   0    00001111   1123556666776 


Q ss_pred             hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHH
Q 014700          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev  271 (420)
                      ++++||+||-+|+.  ..-+++++++-.+.++++++-+-+.++....       +.+.+..+ ..+..  +..|.....+
T Consensus        79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rp-er~iG~HFfNP~~~m~L  150 (307)
T COG1250          79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRP-ERFIGLHFFNPVPLMPL  150 (307)
T ss_pred             HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCc-hhEEEEeccCCCCccee
Confidence            58999999999995  3477888999999999999988888887642       33333221 11211  2334332211


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                           .-++.+ ..+++.++++.++..+.+.......|..|
T Consensus       151 -----VEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG  186 (307)
T COG1250         151 -----VEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG  186 (307)
T ss_pred             -----EEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc
Confidence                 112222 23578899999999998866555566543

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.96  E-value=1.1e-08  Score=99.22  Aligned_cols=201  Identities=20%  Similarity=0.242  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700          142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       142 lA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~  221 (420)
                      +|..|.++|.+++|+.||++++..+...+.|...            ...++ .++++++|+||+|||...+.++++++.+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~   67 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP   67 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence            5888999886689999999998877776665321            23333 4668999999999999999999999999


Q ss_pred             cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECc-----ccHH-HHhhcCCeEEEEec-CCHHHHHHH
Q 014700          222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGP-----SFAL-ELMNKLPTAMVVAS-KDRKLANAV  292 (420)
Q Consensus       222 ~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP-----~~a~-ev~~g~~t~i~ia~-~d~e~~~~l  292 (420)
                      +++++++|+.+. ++-.    .+.+.+.+.++..  .....-+.||     ..+. +.+.+....++... .+.+.++.+
T Consensus        68 ~~~~~~iv~Dv~-SvK~----~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~  142 (258)
T PF02153_consen   68 YLKPGAIVTDVG-SVKA----PIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV  142 (258)
T ss_dssp             GS-TTSEEEE---S-CH----HHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred             hcCCCcEEEEeC-CCCH----HHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence            999999998875 2321    2334455544411  1112234555     2222 34455554444333 356788999


Q ss_pred             HHHHhcCCceEEEcCChhHHHHHH---HHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          293 QQLLASKHLRISTSSDVTGVEIAG---ALKNVLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       293 ~~ll~~~g~~v~~s~Di~g~e~~~---alkNv~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      +++++..|.++...+.-.+++..+   .+.++++.+... .............+...+++.+.+++.   .+|+.
T Consensus       143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRia~---~~p~l  214 (258)
T PF02153_consen  143 EELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRIAS---SDPEL  214 (258)
T ss_dssp             HHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG---S-HHH
T ss_pred             HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhccccc---CChHH
Confidence            999999999988765445555443   355555554443 111111122234555667777775543   45543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.96  E-value=3.3e-08  Score=98.85  Aligned_cols=153  Identities=14%  Similarity=0.174  Sum_probs=110.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al~~aDiV  203 (420)
                      .+.||+||+|.||.-+|..++++|  +.|.+|+|+.++.+++.+.+...+         ++....+++|   .++..--|
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI   71 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI   71 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence            468999999999999999999999  999999999999998877653221         2222334444   46778999


Q ss_pred             EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE-ECcccHHHHhhcCCeEEEE
Q 014700          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl-~GP~~a~ev~~g~~t~i~i  281 (420)
                      ++.|+. ..+..++++|.|++.++.+||.--|..-.+|.++..+.-.+  |     +.++ .|-+-.+|-+...|.  ++
T Consensus        72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~--G-----i~FvG~GVSGGEeGA~~GPS--iM  142 (473)
T COG0362          72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK--G-----ILFVGMGVSGGEEGARHGPS--IM  142 (473)
T ss_pred             EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhc--C-----CeEEeccccccccccccCCC--cC
Confidence            999997 66899999999999999999998887777765544332222  2     2222 233333343434443  34


Q ss_pred             ecCCHHHHHHHHHHHhcC
Q 014700          282 ASKDRKLANAVQQLLASK  299 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~  299 (420)
                      .+++++..+.++++|++.
T Consensus       143 pGG~~eay~~v~pil~~I  160 (473)
T COG0362         143 PGGQKEAYELVAPILTKI  160 (473)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            567888899999999863

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.94  E-value=2e-08  Score=110.40  Aligned_cols=170  Identities=14%  Similarity=0.188  Sum_probs=113.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~e  195 (420)
                      ..+||+|||+|.||..||..++.+|  ++|+++|++++.+++..+.       ......+...   ....+++.++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  389 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG  389 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence            4578999999999999999999999  9999999998876543221       0000001110   11246788888854


Q ss_pred             hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                       +.+||+||-||+.  ..-++++.++.+++++++++.+.+.++...       .+.+.+..+ ..+..+  ..|.+...+
T Consensus       390 -~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~-------~ia~~~~~p-~r~ig~Hff~P~~~~~l  460 (714)
T TIGR02437       390 -FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS-------LLAKALKRP-ENFCGMHFFNPVHRMPL  460 (714)
T ss_pred             -hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCc-ccEEEEecCCCcccCce
Confidence             7999999999995  347789999999999999998887777653       233333322 112111  223322110


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                           .-++.+ ..+++.++.+.+++...|...+...|..|
T Consensus       461 -----vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG  496 (714)
T TIGR02437       461 -----VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG  496 (714)
T ss_pred             -----EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc
Confidence                 112222 24678899999999999988887778654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.93  E-value=6.9e-09  Score=100.81  Aligned_cols=222  Identities=18%  Similarity=0.198  Sum_probs=139.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------CCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l~~~i~a~td~~eal~~a  200 (420)
                      |+||+.||+|.+|..-...++-..-+.+|+++|.+..++..++... -+.|.||..      -..++.+.+|.+.+++++
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~-lpiyepgldevv~~crgknlffstdiekai~ea   79 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDK-LPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA   79 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCC-CcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence            5799999999999998888876654578999999998888887754 456778763      246788899999999999


Q ss_pred             cEEEEccCh---------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCeEEEE
Q 014700          201 DYCLHAMPV---------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALS  263 (420)
Q Consensus       201 DiVIlaVp~---------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~--~~~~~~vl~  263 (420)
                      |+||+.|..               .+.++....|+......++|+--+. +...    .+|.+...+..  +...+-+++
T Consensus        80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~----aaesi~~il~~n~~~i~fqils  154 (481)
T KOG2666|consen   80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVK----AAESIEKILNHNSKGIKFQILS  154 (481)
T ss_pred             ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccch----HHHHHHHHHhcCCCCceeEecc
Confidence            999998753               2567777788887777777765432 3332    34455554432  224567889


Q ss_pred             CcccHHHHh----hcCCeEEEEecCC-H---HHHHHHHHHHhcCC-ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhccc
Q 014700          264 GPSFALELM----NKLPTAMVVASKD-R---KLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL  334 (420)
Q Consensus       264 GP~~a~ev~----~g~~t~i~ia~~d-~---e~~~~l~~ll~~~g-~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~l  334 (420)
                      .|.|..|..    .-.|..+.+++.+ +   ..++.+..+++..- ..-..+.+....|+.++..|.+..     +.. -
T Consensus       155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafla-----qri-s  228 (481)
T KOG2666|consen  155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLA-----QRI-S  228 (481)
T ss_pred             ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHH-----HHH-h
Confidence            998876521    1245667777654 2   34455555555421 112334444455666655553211     111 1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          335 GNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       335 g~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      .-|.+.++.-+.-+++..+|.+.|.|
T Consensus       229 sins~salceatgadv~eva~avg~d  254 (481)
T KOG2666|consen  229 SINSMSALCEATGADVSEVAYAVGTD  254 (481)
T ss_pred             hhHHHHHHHHhcCCCHHHHHHHhccc
Confidence            12444444444445555566665554

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.93  E-value=3.2e-08  Score=108.67  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHhc---C----CCCCCCCC---CCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~~~~i~~~g---~----~~~~l~~~---~l~~~i~a~td~~e  195 (420)
                      ++||+|||+|.||..+|..++ .+|  ++|+++|++++.++...+.-   +    ....+...   ....+++.++|++ 
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  380 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-  380 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence            468999999999999999998 578  99999999987654432210   0    00001000   1124678888885 


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                      ++++||+||-|+|..  .-++++.++.+++++++++.+.+.++....       +.+.+..+ ..+..+  ..|.+... 
T Consensus       381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p-~r~~g~HffnP~~~~~-  451 (699)
T TIGR02440       381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRP-ENVIGLHYFSPVEKMP-  451 (699)
T ss_pred             HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCc-ccEEEEecCCccccCc-
Confidence            579999999999953  467889999999999999988887777542       23333322 122211  22322111 


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                          ..-++.+ ..+++.++.+.++++..|...+...|.-|
T Consensus       452 ----lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG  488 (699)
T TIGR02440       452 ----LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG  488 (699)
T ss_pred             ----eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence                1112222 24688999999999999999888788654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.91  E-value=3.4e-08  Score=108.66  Aligned_cols=169  Identities=21%  Similarity=0.216  Sum_probs=112.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHHh---c----CCCCCCCC---CCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK---H----CNCRYFPE---QKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~~~~i~~~---g----~~~~~l~~---~~l~~~i~a~td~~e  195 (420)
                      .+||+|||+|.||..+|..++ .+|  ++|+++|++++.+++..+.   .    .....+..   .....+++.++|++ 
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  385 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-  385 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence            578999999999999999999 778  9999999998765443211   0    00000110   01234688888885 


Q ss_pred             hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                      ++++||+||-|++.  ...++++.++.+++++++++.+.+.++....       +.+.+..+ ..+..+  ..|.+... 
T Consensus       386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p-~r~ig~Hff~P~~~~~-  456 (708)
T PRK11154        386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARP-EQVIGLHYFSPVEKMP-  456 (708)
T ss_pred             HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcc-cceEEEecCCccccCc-
Confidence            57999999999995  3477889999999999999988887776542       33333322 122211  22332211 


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                          ..-++.+ ..+++.++.+..++...|...+...|..|
T Consensus       457 ----lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG  493 (708)
T PRK11154        457 ----LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG  493 (708)
T ss_pred             ----eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence                1112222 34688899999999999987777677544

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.90  E-value=3.8e-08  Score=108.33  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=113.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~ea  196 (420)
                      ++||+|||+|.||..||..++.+|  ++|+++|++++.+++..+.       ......+...   ....+++.++|+++ 
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  389 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-  389 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence            578999999999999999999999  9999999998865432211       0000001111   12346788888854 


Q ss_pred             ccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHHh
Q 014700          197 LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALELM  272 (420)
Q Consensus       197 l~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev~  272 (420)
                      +++||+||-|+|.  ...++++.++.+++++++++.+.+.++...       .+.+.+..+ ..+..  +..|.+...  
T Consensus       390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p-~r~~g~Hff~P~~~~~--  459 (715)
T PRK11730        390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS-------LLAKALKRP-ENFCGMHFFNPVHRMP--  459 (715)
T ss_pred             hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCC-ccEEEEecCCcccccc--
Confidence            7999999999995  457788999999999999998877777653       233333332 12221  122322211  


Q ss_pred             hcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          273 NKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       273 ~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                         ..-++.+ ..+++.++.+..++...|...+...|.-|
T Consensus       460 ---lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  496 (715)
T PRK11730        460 ---LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG  496 (715)
T ss_pred             ---eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence               1112222 23688899999999999988887788655

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.90  E-value=3.2e-08  Score=109.16  Aligned_cols=170  Identities=16%  Similarity=0.210  Sum_probs=114.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCCC---CCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~~---~l~~~i~a~td~~e  195 (420)
                      .++||+|||+|.||..||..++.+|  ++|+++|++++.+++..+.       ......+...   ....+++.++|++ 
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  410 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-  410 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence            4578999999999999999999998  9999999999876543221       0000001110   1224678888886 


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                      ++++||+||-||+..  .-++++.++.+++++++++.+.+.++..+       .+.+.+..+ ..+..+  ..|.+... 
T Consensus       411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p-~r~ig~Hff~P~~~m~-  481 (737)
T TIGR02441       411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRP-EKVIGMHYFSPVDKMQ-  481 (737)
T ss_pred             HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc-cceEEEeccCCcccCc-
Confidence            479999999999953  47788999999999999998877777653       233333332 122211  22332211 


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                          ..-++.+ ..+++.++.+..++...|...+...|..|
T Consensus       482 ----LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG  518 (737)
T TIGR02441       482 ----LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG  518 (737)
T ss_pred             ----eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence                1112222 24678899999999999988887788654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=98.89  E-value=5.8e-09  Score=106.76  Aligned_cols=225  Identities=16%  Similarity=0.139  Sum_probs=128.5

Q ss_pred             CeEEEEcccHHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC-CCCCCCC---CCCCceEEeC--CHHH---hc
Q 014700          128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYFPEQ---KLPENVIATT--DAKT---AL  197 (420)
Q Consensus       128 mkI~IIGaGamG~-alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~-~~~l~~~---~l~~~i~a~t--d~~e---al  197 (420)
                      |||.++|+|+||. .++..|.++|  ++|+++++++++++.|++.|.- .......   ..-..+....  +.++   .+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~   78 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI   78 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence            7999999999998 5588898888  9999999999999999998642 1111111   1111333331  2232   34


Q ss_pred             cCCcEEEEccChhhHHHHHHHhhhcCCCC--------CeEEEeccCCCcchhhhHHHHHHHHh------------CCCCC
Q 014700          198 LGADYCLHAMPVQFSSSFLEGISDYVDPG--------LPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ  257 (420)
Q Consensus       198 ~~aDiVIlaVp~~~l~~vl~~i~~~l~~~--------~iVVs~snGi~~~t~~~~se~l~~~l------------g~~~~  257 (420)
                      .++|+|+++|+...++.+...+.+.+.+.        -.|++|.||+....  .+.+.+.+..            +-+ .
T Consensus        79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~--~L~~~V~~~~~~~~~~wi~~~~~f~-~  155 (381)
T PRK02318         79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTS--FLKKHVLKALSEDEKAWLEEHVGFV-D  155 (381)
T ss_pred             cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHH--HHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence            58899999999888777777776655332        26899999987642  2233332211            110 0


Q ss_pred             CeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCC-----ceEEEcCChhHHHHHHHHHHH-H---HHHHHH
Q 014700          258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-L---AIAAGI  328 (420)
Q Consensus       258 ~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g-----~~v~~s~Di~g~e~~~alkNv-~---Ai~~G~  328 (420)
                      ..+-..+|....+   + +  +.+..  +...+.+.+.++..+     ..+.+++|+...+|.|+..|- .   ....|.
T Consensus       156 t~VDrI~P~~~~~---d-~--~~v~~--E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~  227 (381)
T PRK02318        156 SAVDRIVPAQKNE---D-P--LDVTV--EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY  227 (381)
T ss_pred             cHHhcCCCCCCcc---C-C--ccccc--ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence            0111223311000   0 0  00000  011111111111111     157788999999999986642 2   222344


Q ss_pred             HHhcc-----cchhHHHHHHHHHHHHHHHHHH-HcCCChhhhh
Q 014700          329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPATIT  365 (420)
Q Consensus       329 ~~gl~-----lg~N~~~al~~~~~~E~~~lA~-a~Gi~~~t~~  365 (420)
                      ..|.+     +.+.....++...+.|+..++. +.|++++.+.
T Consensus       228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~l~  270 (381)
T PRK02318        228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEEHA  270 (381)
T ss_pred             HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHHHH
Confidence            33332     2344556788889999999995 5688655443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.89  E-value=5e-09  Score=105.31  Aligned_cols=123  Identities=20%  Similarity=0.225  Sum_probs=86.6

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|.    |.+.   ..+.++.  .|+|+|||+|.||.++|..|++ +++.+|..|+++....  ...
T Consensus       119 R~~~~~~~~~~~~~~~----~~~~---~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~--~~~  186 (332)
T PRK08605        119 RHFNQIQTKVREHDFR----WEPP---ILSRSIK--DLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK--AAT  186 (332)
T ss_pred             cChHHHHHHHHhCCcc----cccc---cccceeC--CCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh--HHh
Confidence            5555667777777772    5431   1223343  6899999999999999999954 2338999999876431  111


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                       .              +...+++++++++||+|++++|... .+.++ ++..+.+++++++|++++|...++
T Consensus       187 -~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  243 (332)
T PRK08605        187 -Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT  243 (332)
T ss_pred             -h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence             1              1233478899999999999999755 44443 345677889999999999987765

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.87  E-value=9.4e-09  Score=103.35  Aligned_cols=128  Identities=15%  Similarity=0.216  Sum_probs=91.5

Q ss_pred             ccCCccccchhhhchhcc-eeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKL-VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ++-...++.++.+.|.+. ..|.+.  ...+.++.  .++|+|||+|.||..+|..|...|  ++|.+|+|+.+... ..
T Consensus       117 R~~~~~~~~~~~g~W~~~~~~~~~~--~~~g~~L~--gktvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~-~~  189 (333)
T PRK13243        117 RRLVEADHFVRSGEWKRRGVAWHPL--MFLGYDVY--GKTIGIIGFGRIGQAVARRAKGFG--MRILYYSRTRKPEA-EK  189 (333)
T ss_pred             hCHHHHHHHHHcCCCCccccccccc--cccccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCChhh-HH
Confidence            556677888889988752 113210  11223444  789999999999999999999877  89999998764321 11


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ..+              +. ..+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       190 ~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        190 ELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             HcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence            111              12 23788999999999999995 4466666 456777899999999999866543

>PRK07574 formate dehydrogenase; Provisional

Probab=98.85  E-value=1.4e-08  Score=103.77  Aligned_cols=126  Identities=13%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...+|.++.+.|...   .   ......++.  .|+|+|||+|.||..+|++|..-|  .+|.+|+|.....+...+
T Consensus       164 R~~~~~~~~~~~g~W~~~---~---~~~~~~~L~--gktVGIvG~G~IG~~vA~~l~~fG--~~V~~~dr~~~~~~~~~~  233 (385)
T PRK07574        164 RNYEPSHRQAVEGGWNIA---D---CVSRSYDLE--GMTVGIVGAGRIGLAVLRRLKPFD--VKLHYTDRHRLPEEVEQE  233 (385)
T ss_pred             cCHHHHHHHHHhCCCCcc---c---ccccceecC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCchhhHhh
Confidence            556667787888877641   1   001112333  689999999999999999999877  999999987522221111


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .              ++....+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus       234 ~--------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe  291 (385)
T PRK07574        234 L--------------GLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDR  291 (385)
T ss_pred             c--------------CceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhH
Confidence            1              123335789999999999999994 55777773 46677899999999999866543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.84  E-value=1.1e-08  Score=102.17  Aligned_cols=137  Identities=15%  Similarity=0.210  Sum_probs=98.6

Q ss_pred             ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700           89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus        89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      ..|+-.+.+|+.|.|.|..   |+ ......+.+++  .+++||||+|.+|.++|+++..  ++.+|..|+|.+.  ...
T Consensus       114 ~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l~--gktvGIiG~GrIG~avA~r~~~--Fgm~v~y~~~~~~--~~~  183 (324)
T COG1052         114 LARRIHEGDRRVREGNWSL---SG-GPDPLLGFDLR--GKTLGIIGLGRIGQAVARRLKG--FGMKVLYYDRSPN--PEA  183 (324)
T ss_pred             HhhchHHHHHHHhcCcccc---cC-CcccccccCCC--CCEEEEECCCHHHHHHHHHHhc--CCCEEEEECCCCC--hHH
Confidence            4488899999999998887   32 11223344555  7899999999999999999983  5599999998864  122


Q ss_pred             HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (420)
Q Consensus       169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se  246 (420)
                      .+.. .            .... +++|.++.||+|++.+|. ...+.++. +....++++.++|++..|-..++ ..+.+
T Consensus       184 ~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe-~ALi~  248 (324)
T COG1052         184 EKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDE-QALID  248 (324)
T ss_pred             Hhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCH-HHHHH
Confidence            2211 1            1223 488999999999999995 55777773 45677899999999999976654 23334


Q ss_pred             HHHH
Q 014700          247 IIPQ  250 (420)
Q Consensus       247 ~l~~  250 (420)
                      .+++
T Consensus       249 AL~~  252 (324)
T COG1052         249 ALKS  252 (324)
T ss_pred             HHHh
Confidence            4443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.84  E-value=1.1e-08  Score=93.86  Aligned_cols=96  Identities=19%  Similarity=0.281  Sum_probs=71.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||.|.+|..+|..|..-|  .+|++|+|...........+              + ...+++|+++.||+|+++
T Consensus        36 g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~aDiv~~~   98 (178)
T PF02826_consen   36 GKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQADIVSLH   98 (178)
T ss_dssp             TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH-SEEEE-
T ss_pred             CCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcchhhhhhhh
Confidence            689999999999999999999877  99999999986544233322              2 234889999999999999


Q ss_pred             cCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       207 Vp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      +|. ...+.++ ++....++++.++|++..|-..+
T Consensus        99 ~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd  133 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD  133 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred             hccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence            994 3454444 34456688999999999986554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.84  E-value=1e-08  Score=102.53  Aligned_cols=125  Identities=16%  Similarity=0.203  Sum_probs=92.9

Q ss_pred             ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700           89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus        89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      ..|+-...++.+++|.|++.        ...+.++.  .++|||||+|++|+.+|.+|..-|  .+|.+||+....- .-
T Consensus       114 ~~R~~~~~~~~~~~g~W~~~--------~~~g~el~--gkTvGIiG~G~IG~~va~~l~afg--m~v~~~d~~~~~~-~~  180 (324)
T COG0111         114 LARRIPDADASQRRGEWDRK--------AFRGTELA--GKTVGIIGLGRIGRAVAKRLKAFG--MKVIGYDPYSPRE-RA  180 (324)
T ss_pred             HhcCchhhHHHHHcCCcccc--------cccccccc--CCEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCCchh-hh
Confidence            34777888888899977761        23334455  789999999999999999999877  9999999933211 11


Q ss_pred             HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ...              ......++++.++.||+|.+.+|. ..++.++. +....++++.++|++..|-..+.
T Consensus       181 ~~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde  240 (324)
T COG0111         181 GVD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDE  240 (324)
T ss_pred             ccc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecH
Confidence            111              123345799999999999999994 55777773 34567889999999999976553

>PLN03139 formate dehydrogenase; Provisional

Probab=98.81  E-value=1.9e-08  Score=102.71  Aligned_cols=125  Identities=12%  Similarity=0.129  Sum_probs=90.0

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-.+.++.++.+.|... .|     .....++.  .++|+|||+|.||..+|++|..-|  .+|.+|+|.....+...+
T Consensus       171 R~~~~~~~~~~~g~W~~~-~~-----~~~~~~L~--gktVGIVG~G~IG~~vA~~L~afG--~~V~~~d~~~~~~~~~~~  240 (386)
T PLN03139        171 RNFLPGYHQVVSGEWNVA-GI-----AYRAYDLE--GKTVGTVGAGRIGRLLLQRLKPFN--CNLLYHDRLKMDPELEKE  240 (386)
T ss_pred             cCcHHHHHHHHhCCCccc-cc-----cCCCcCCC--CCEEEEEeecHHHHHHHHHHHHCC--CEEEEECCCCcchhhHhh
Confidence            555677788888877631 11     11122333  789999999999999999999877  899999987432222222


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .              ++....+++++++.||+|++++|. ..++.++ +++...++++.++|++..|-..+
T Consensus       241 ~--------------g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD  297 (386)
T PLN03139        241 T--------------GAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMD  297 (386)
T ss_pred             c--------------CceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhh
Confidence            1              123345889999999999999994 5577777 45677889999999999986554

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.78  E-value=3.5e-08  Score=88.34  Aligned_cols=93  Identities=19%  Similarity=0.320  Sum_probs=69.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|+|||.|..|.+.|..|.++|  .+|++-.|... ..++.++.|.              .+ .+.+|+++.+|+|++
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf--------------~v-~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGF--------------EV-MSVAEAVKKADVVML   66 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT---------------EC-CEHHHHHHC-SEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCC--------------ee-ccHHHHHhhCCEEEE
Confidence            579999999999999999999999  89999888765 5566666653              22 267899999999999


Q ss_pred             ccChhhHHHHH-HHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~  237 (420)
                      .+|+....+++ ++|.+++++++.++. +-|+.
T Consensus        67 L~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfn   98 (165)
T PF07991_consen   67 LLPDEVQPEVYEEEIAPNLKPGATLVF-AHGFN   98 (165)
T ss_dssp             -S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHH
T ss_pred             eCChHHHHHHHHHHHHhhCCCCCEEEe-CCcch
Confidence            99999999998 789999999998764 44653

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=1.6e-07  Score=93.66  Aligned_cols=188  Identities=16%  Similarity=0.174  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHH----HHHh---cCCCCCCCCC---CCCCceEEeCC--HHHhcc
Q 014700          138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQS----INEK---HCNCRYFPEQ---KLPENVIATTD--AKTALL  198 (420)
Q Consensus       138 mG~alA~~La~aG~~~~V~l~~r~~~~-------~~~----i~~~---g~~~~~l~~~---~l~~~i~a~td--~~eal~  198 (420)
                      ||..||..++.+|  ++|+++|++++.       ++.    +.+.   -.....+...   ....+++.+++  +.++++
T Consensus         1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~   78 (314)
T PRK08269          1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA   78 (314)
T ss_pred             CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence            7999999999998  999999998842       111    1110   0000001110   11245666654  667889


Q ss_pred             CCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHHhhc
Q 014700          199 GADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALELMNK  274 (420)
Q Consensus       199 ~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev~~g  274 (420)
                      +||+||.|||..  ..+.++.++.+.+++++++.+.+.++...       .+.+.+..+ ..+..  +..|.+..     
T Consensus        79 ~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p-~r~~g~Hf~~Pp~~~-----  145 (314)
T PRK08269         79 DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHP-ERFLNAHWLNPAYLM-----  145 (314)
T ss_pred             cCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCc-ccEEEEecCCccccC-----
Confidence            999999999953  35667788888899999997666655532       233333221 01111  11122111     


Q ss_pred             CCeEEEEe--cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 014700          275 LPTAMVVA--SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW  352 (420)
Q Consensus       275 ~~t~i~ia--~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~  352 (420)
                       +..=++.  ..+++.++++.++++..|..+++..|.-|-                         ....+....++|+..
T Consensus       146 -~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gf-------------------------i~nri~~~~l~EAl~  199 (314)
T PRK08269        146 -PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGY-------------------------IVPRIQALAMNEAAR  199 (314)
T ss_pred             -ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCc-------------------------chHHHHHHHHHHHHH
Confidence             1111112  357889999999999999888877775431                         122345567788888


Q ss_pred             HHHHcCCChhhhhh
Q 014700          353 LATKMGAKPATITG  366 (420)
Q Consensus       353 lA~a~Gi~~~t~~~  366 (420)
                      +++..|++++.+..
T Consensus       200 l~e~g~~~~e~iD~  213 (314)
T PRK08269        200 MVEEGVASAEDIDK  213 (314)
T ss_pred             HHHhCCCCHHHHHH
Confidence            88887777776654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.71  E-value=9e-08  Score=94.87  Aligned_cols=94  Identities=17%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||.|+||.++|.+|...|  ++|++|+|.....+.....|              +.. .+++++++.||+|+++
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G--------------~~v-~sl~Eaak~ADVV~ll   78 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADG--------------FEV-MSVSEAVRTAQVVQML   78 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcC--------------CEE-CCHHHHHhcCCEEEEe
Confidence            579999999999999999999998  99999987643333333322              222 2788999999999999


Q ss_pred             cChhhHHHHH-HHhhhcCCCCCeEEEeccCCCc
Q 014700          207 MPVQFSSSFL-EGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       207 Vp~~~l~~vl-~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|....++++ +++.+.++++++++ .+-|+..
T Consensus        79 LPd~~t~~V~~~eil~~MK~GaiL~-f~hgfni  110 (335)
T PRK13403         79 LPDEQQAHVYKAEVEENLREGQMLL-FSHGFNI  110 (335)
T ss_pred             CCChHHHHHHHHHHHhcCCCCCEEE-ECCCcce
Confidence            9987677887 46888899988765 4557653

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.71  E-value=2.8e-07  Score=85.93  Aligned_cols=167  Identities=11%  Similarity=0.221  Sum_probs=103.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|||+ |.||..++..|.++|  +.|+                                        +.+||+||+|
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila   38 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS   38 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence            69999998 999999999999998  8875                                        1368999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-HhhcCCeEEEEe-cC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-LMNKLPTAMVVA-SK  284 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-v~~g~~t~i~ia-~~  284 (420)
                      +|...+.++++++.+      +|+.+.. +-.    .+.+...+.+|.  +|   +.||..+.. ++  . ..++.. ..
T Consensus        39 vPv~~~~~~i~~~~~------~v~Dv~S-vK~----~i~~~~~~~vg~--HP---MfGp~~a~~~lf--~-~~iv~~~~~   99 (197)
T PRK06444         39 VPIDAALNYIESYDN------NFVEISS-VKW----PFKKYSGKIVSI--HP---LFGPMSYNDGVH--R-TVIFINDIS   99 (197)
T ss_pred             CCHHHHHHHHHHhCC------eEEeccc-cCH----HHHHhcCCEEec--CC---CCCCCcCccccc--c-eEEEECCCC
Confidence            999999998887652      4555431 110    111111122222  33   346766542 22  1 222222 33


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc-CCC
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM-GAK  360 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~-Gi~  360 (420)
                      +++..+.++++++  |.++...+--.+++..+.   |.|+++.+..-   .+      ..+...+++.+.++|+.. +.+
T Consensus       100 ~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~~---~~------~~~~t~~fr~l~ria~~~~~~~  168 (197)
T PRK06444        100 RDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILKD---IK------SDIKTGSFDKLLEVSEIKEKEN  168 (197)
T ss_pred             CHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHcc---CC------CCCCCccHHHHHHHHHHhccCC
Confidence            5566788999998  677776655455554443   44444332221   11      234567899999999887 667


Q ss_pred             hhhhhh
Q 014700          361 PATITG  366 (420)
Q Consensus       361 ~~t~~~  366 (420)
                      ++.+.+
T Consensus       169 p~lw~d  174 (197)
T PRK06444        169 WEVFND  174 (197)
T ss_pred             HHHHHH
Confidence            765544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.69  E-value=5e-08  Score=103.83  Aligned_cols=123  Identities=14%  Similarity=0.191  Sum_probs=89.3

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|++.        ...+.++.  .++|+|||.|.||..+|.+|..-|  ++|.+|++.... +...+
T Consensus       112 R~~~~~~~~~~~g~W~~~--------~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  178 (525)
T TIGR01327       112 RNIPQADASLKEGEWDRK--------AFMGTELY--GKTLGVIGLGRIGSIVAKRAKAFG--MKVLAYDPYISP-ERAEQ  178 (525)
T ss_pred             cCHHHHHHHHHcCCcccc--------ccCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            666677888888877642        11223344  689999999999999999998877  899999985221 11122


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .              ++...++++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       179 ~--------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde  236 (525)
T TIGR01327       179 L--------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDE  236 (525)
T ss_pred             c--------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCH
Confidence            1              123345789999999999999995 4577776 345567899999999999866553

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.67  E-value=6.2e-08  Score=103.14  Aligned_cols=122  Identities=14%  Similarity=0.192  Sum_probs=89.4

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|++.        ...+.++.  .++|+|||+|.||..+|.+|..-|  ++|.+|+|.... +....
T Consensus       114 R~~~~~~~~~~~g~W~~~--------~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  180 (526)
T PRK13581        114 RNIPQAHASLKAGKWERK--------KFMGVELY--GKTLGIIGLGRIGSEVAKRAKAFG--MKVIAYDPYISP-ERAAQ  180 (526)
T ss_pred             cCHHHHHHHHHcCCCCcc--------CccccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            566667777888877642        11222344  689999999999999999999877  999999985421 11122


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+              +... +++++++.||+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus       181 ~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde  237 (526)
T PRK13581        181 LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDE  237 (526)
T ss_pred             cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCH
Confidence            11              2333 788999999999999995 4577777 456777899999999999866553

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.62  E-value=1.5e-07  Score=93.86  Aligned_cols=96  Identities=11%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||.|.||..+|..|..-|  ++|.+|++..+...     +..           ......++++++++||+|+++
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~  197 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINL  197 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEEC
Confidence            579999999999999999999877  99999998653211     100           001123788999999999999


Q ss_pred             cCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|. ..++.++. +....++++.++|++..|-..++
T Consensus       198 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             CCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCH
Confidence            994 55777774 46677899999999999866553

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.61  E-value=1.1e-07  Score=94.27  Aligned_cols=117  Identities=11%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|...          ...++.  .++|+|||.|.||..+|..|..-|  ++|.+|+|+...      
T Consensus        98 R~i~~~~~~~~~g~w~~~----------~~~~L~--gktvgIiG~G~IG~~vA~~l~afG--~~V~~~~r~~~~------  157 (303)
T PRK06436         98 KNICENNYNMKNGNFKQS----------PTKLLY--NKSLGILGYGGIGRRVALLAKAFG--MNIYAYTRSYVN------  157 (303)
T ss_pred             cChHHHHHHHHcCCCCCC----------CCCCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcc------
Confidence            556677788888866531          112333  789999999999999999887666  999999986321      


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+..             ....++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       158 ~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        158 DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence            1110             1124788999999999999995 4566666 345666889999999999866553

>PLN02306 hydroxypyruvate reductase

Probab=98.60  E-value=2.1e-07  Score=95.30  Aligned_cols=140  Identities=13%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSI-  168 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i-  168 (420)
                      ++-...++.++.+.|.+   |.+.  ...+.++.  .++|||||.|.+|..+|++|.+. ++.+|..|++.... .+.. 
T Consensus       136 R~i~~~~~~~~~g~w~~---~~~~--~~~g~~L~--gktvGIiG~G~IG~~vA~~l~~~-fGm~V~~~d~~~~~~~~~~~  207 (386)
T PLN02306        136 RRIVEADEFMRAGLYEG---WLPH--LFVGNLLK--GQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQSTRLEKFV  207 (386)
T ss_pred             hChHHHHHHHHcCCCcc---cccc--ccCCcCCC--CCEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCCchhhhhhh
Confidence            55666778888888864   6531  11233444  78999999999999999998633 34899999987532 1111 


Q ss_pred             HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ...+....-....  +..+....+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus       208 ~~~~~~l~~~~~~--~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe  279 (386)
T PLN02306        208 TAYGQFLKANGEQ--PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDE  279 (386)
T ss_pred             hhhcccccccccc--cccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCH
Confidence            1111000000000  00112235899999999999999994 55777773 45677899999999999866553

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.60  E-value=1.5e-07  Score=94.28  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=88.4

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.|.|...  ++.   ...+.++.  .++|||||.|.+|..+|+.|. .+++.+|..|+|.... +....
T Consensus       116 R~i~~~~~~~~~g~w~~~--~~~---~~~g~~L~--gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~~~~~~-~~~~~  186 (323)
T PRK15409        116 RRVVEVAERVKAGEWTAS--IGP---DWFGTDVH--HKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHK-EAEER  186 (323)
T ss_pred             cCHHHHHHHHHcCCCccc--Ccc---ccccCCCC--CCEEEEEcccHHHHHHHHHHH-hcCCCEEEEECCCCch-hhHHh
Confidence            566777888899988652  221   11233444  789999999999999999987 2234899999876421 11111


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+              +.. .+++++++.||+|++++|. ..++.++ ++....++++.++|++..|-..++
T Consensus       187 ~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde  243 (323)
T PRK15409        187 FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDE  243 (323)
T ss_pred             cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCH
Confidence            11              122 3789999999999999994 5577777 345677899999999999866553

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.59  E-value=1.5e-07  Score=97.15  Aligned_cols=120  Identities=15%  Similarity=0.218  Sum_probs=88.2

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.|.|.+.      .  ..+.++.  .++|||||.|++|..+|..+..-|  .+|..|++.+..    ..
T Consensus       125 R~~~~~~~~~~~g~w~~~------~--~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fG--m~V~~~d~~~~~----~~  188 (409)
T PRK11790        125 RGIPEKNAKAHRGGWNKS------A--AGSFEVR--GKTLGIVGYGHIGTQLSVLAESLG--MRVYFYDIEDKL----PL  188 (409)
T ss_pred             cChHHHHHHHHcCccccc------c--cCcccCC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCccc----cc
Confidence            556667777888877541      1  1122334  789999999999999999998766  999999986421    00


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                       +             .+....+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       189 -~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde  246 (409)
T PRK11790        189 -G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI  246 (409)
T ss_pred             -C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence             0             123344799999999999999995 5577777 345677899999999999866553

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.56  E-value=1.4e-06  Score=83.07  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=110.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~-i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |+|+|||+|.|..+++..+..+|.  ..++..+..+...... +...|              ++.+.+..+.++.+|+++
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g--------------~~~~~~n~~~~~~s~v~~   66 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALG--------------VKTVFTNLEVLQASDVVF   66 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCC--------------ceeeechHHHHhhcccee
Confidence            689999999999999999999884  2345555543322222 33332              233333367788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-  283 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-  283 (420)
                      ++||.+.+.+++.++...+..+++|+++.-|...++       +.+.++..  .-.+...|+.+..+..+.. .+..+. 
T Consensus        67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~~--~rviRvmpNtp~~v~eg~s-v~~~g~~  136 (267)
T KOG3124|consen   67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSPP--TRVIRVMPNTPSVVGEGAS-VYAIGCH  136 (267)
T ss_pred             EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCCC--CceEEecCCChhhhhcCcE-EEeeCCC
Confidence            999999999999999887778899999998887643       33344421  2246677888776665542 222332 


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVT  310 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~  310 (420)
                      ...++.+.++++|+..|+...+.++.+
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~evpE~~i  163 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCEEVPEKCI  163 (267)
T ss_pred             cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence            245667899999999999888776543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.55  E-value=1.1e-07  Score=94.88  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|....-|..  ......++.  .++|||||.|.+|..+|..+..-|  .+|..|+|.....    .
T Consensus       113 R~~~~~~~~~~~g~w~~~~~~~~--~~~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fg--m~V~~~d~~~~~~----~  182 (311)
T PRK08410        113 GRINYYDRYVKSGEYSESPIFTH--ISRPLGEIK--GKKWGIIGLGTIGKRVAKIAQAFG--AKVVYYSTSGKNK----N  182 (311)
T ss_pred             hCHHHHHHHHHcCCCCcCCCccc--cCccccccC--CCEEEEECCCHHHHHHHHHHhhcC--CEEEEECCCcccc----c
Confidence            56667788888887764211110  001112334  789999999999999999997655  8999999853210    0


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+              +. ..+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus       183 ~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe  239 (311)
T PRK08410        183 EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNE  239 (311)
T ss_pred             cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence            01              11 23789999999999999994 4566666 345667899999999999866553

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=4.5e-07  Score=89.61  Aligned_cols=258  Identities=15%  Similarity=0.178  Sum_probs=154.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh---ccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea---l~~aDiV  203 (420)
                      .+.|+.||++.||..++...+..|  +.|.+|+|+..+++++.++..+-.         .+.-..++++.   ++....|
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak~~---------~i~ga~S~ed~v~klk~PR~i   74 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAKGT---------KIIGAYSLEDFVSKLKKPRVI   74 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhcCC---------cccCCCCHHHHHHhcCCCcEE
Confidence            368999999999999999999999  999999999999988766532211         12223466664   4678899


Q ss_pred             EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ++-|+. ..+..+++++.+++.++.+||.--|.--.+|.++..+ +.+. |.    ..+-+|-+-.+|-++..|.  .+.
T Consensus        75 illvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k~-Gi----lfvG~GVSGGEEGAR~GPS--lMp  146 (487)
T KOG2653|consen   75 ILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAKK-GI----LFVGSGVSGGEEGARYGPS--LMP  146 (487)
T ss_pred             EEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHhc-Cc----EEEecCccCcccccccCCc--cCC
Confidence            999986 5688999999999999999998877555555443322 2221 32    1222344434444444443  245


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEc---CChhHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-c
Q 014700          283 SKDRKLANAVQQLLASKHLRISTS---SDVTGVEIAG-ALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-M  357 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s---~Di~g~e~~~-alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a-~  357 (420)
                      +++.+....++.+|+....++...   -+++|..-++ .+| +      .-.+..+|+       .+.+.|+..+.+. .
T Consensus       147 Gg~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVK-M------VHNGIEYGD-------MqLI~EaY~vlk~~~  212 (487)
T KOG2653|consen  147 GGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVK-M------VHNGIEYGD-------MQLICEAYDVLKSVL  212 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchh-h------hccCcccch-------HHHHHHHHHHHHHhc
Confidence            667788888888887542222111   1122211000 011 0      112333443       4567888888877 6


Q ss_pred             CCChhhhhhcc---ccchhhhhhcccCCCCccccccccCCC-ChHHHHHHcCCcccccchhhhhhc
Q 014700          358 GAKPATITGLS---GTGDIMLTCFVNLSRNRTVGVRLGSGE-KLDDILSSMNQVLVNPSMQPLLGK  419 (420)
Q Consensus       358 Gi~~~t~~~l~---g~gdl~~t~~~~~sRn~~~G~~l~~g~-~~~~~~~~~~~~~eG~~t~~~~~~  419 (420)
                      |..-+.+-++-   .-|.+- +..-...|| -+.+.=.+|+ .+++++++.+|-=-|.-|+-...|
T Consensus       213 gls~~eia~vF~~WN~gele-SfLieIT~d-Ilk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale  276 (487)
T KOG2653|consen  213 GLSNDEIAEVFDDWNKGELE-SFLIEITAD-ILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALE  276 (487)
T ss_pred             CCcHHHHHHHHHhhcccchh-HHHHHHhHH-HhheeccCCChHHHHHHhhhcCCCccHHHHHHHHH
Confidence            66655444321   112110 000111222 3555666776 578888888887777776655443

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.52  E-value=1.2e-06  Score=86.99  Aligned_cols=117  Identities=19%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|.||..+|..|+..|.. +|.++|++++..+.....-....  ........++.++|.+ ++++||+||++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence            68999999999999999999998733 99999998765433221100000  0001123455566775 47999999998


Q ss_pred             cC--h--------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          207 MP--V--------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       207 Vp--~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +.  .              ..++++++++.++. ++.++|..+|..+     .+...+.+..+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d-----~~~~~~~~~s~  134 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVD-----AMTYVALKESG  134 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHHhC
Confidence            63  2              23667777777766 4566777777543     33444544433

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.52  E-value=4.1e-07  Score=94.44  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             CeEEEEcccHHHHHHHH--HHH----hcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          128 NKVVVLGGGSFGTAMAA--HVA----NKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       128 mkI~IIGaGamG~alA~--~La----~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +||+|||+|.||.+++.  .++    .+|  ++|.+||++++.++.+....  .++++....+.++..++|+++++++||
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~--~~~~~~~~~~~~I~~ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILA--KKIVEELGAPLKIEATTDRREALDGAD   76 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHH--HHHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence            58999999999999776  343    334  79999999998877665432  112222334457788999999999999


Q ss_pred             EEEEccChh
Q 014700          202 YCLHAMPVQ  210 (420)
Q Consensus       202 iVIlaVp~~  210 (420)
                      +||.+++..
T Consensus        77 ~Vi~ai~~~   85 (423)
T cd05297          77 FVINTIQVG   85 (423)
T ss_pred             EEEEeeEec
Confidence            999999853

linked to 3D####ucture

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=98.51  E-value=5.3e-07  Score=89.83  Aligned_cols=135  Identities=14%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             ccccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700           89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus        89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      .-|+-+.++|.++.|.|....-|.      .+...+  .++|+|+|+|.+|..+|.+|..-|  ..+....|++...+..
T Consensus       132 ~~R~~~~g~~~~~~g~w~~~~~~~------~g~~~~--gK~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~  201 (336)
T KOG0069|consen  132 LLRRFSEGNEMVRNGGWGWAGGWP------LGYDLE--GKTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEA  201 (336)
T ss_pred             HHhhhhhhhhhhhcCCccccCCcc------cccccc--CCEEEEecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhH
Confidence            348888999999999882222222      223334  689999999999999999999855  6677777776544444


Q ss_pred             HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (420)
Q Consensus       169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se  246 (420)
                      .+.+.              . ..|.++.+..+|+|++|.|. ..++.+++ ++..+++++.+||++..|-..+. +.+.+
T Consensus       202 ~~~~~--------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide-~~l~e  265 (336)
T KOG0069|consen  202 YEYYA--------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDE-EALVE  265 (336)
T ss_pred             HHhcc--------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccH-HHHHH
Confidence            43221              0 12677888999999999995 56888885 46778899999999999866542 23344


Q ss_pred             HHH
Q 014700          247 IIP  249 (420)
Q Consensus       247 ~l~  249 (420)
                      .+.
T Consensus       266 aL~  268 (336)
T KOG0069|consen  266 ALK  268 (336)
T ss_pred             HHh
Confidence            443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.51  E-value=6.9e-06  Score=78.21  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=101.5

Q ss_pred             CCeEEEEcccH--------------------HHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCC
Q 014700          127 TNKVVVLGGGS--------------------FGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ  181 (420)
Q Consensus       127 ~mkI~IIGaGa--------------------mG~alA~~La~aG~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~  181 (420)
                      +|||+|.|+|+                    -|..||..++++|  |+|.+.+.+.+     +.+++...          
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedA----------   68 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDA----------   68 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhc----------
Confidence            47999999997                    3788999999999  99999987643     34444443          


Q ss_pred             CCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh-------C
Q 014700          182 KLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-------R  253 (420)
Q Consensus       182 ~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l-------g  253 (420)
                          ++.+++|-.++++++++.++.+|-- .+-.+.++|.++++++.+|.+... .++-   .+-..+...+       |
T Consensus        69 ----GV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT-~sp~---vLy~~LE~~Lr~kR~dVG  140 (340)
T COG4007          69 ----GVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCT-VSPV---VLYYSLEGELRTKREDVG  140 (340)
T ss_pred             ----CcEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEeccccc-Cchh---HHHHHhhhhhcCchhhcC
Confidence                4577777778899999999999964 788899999999999988765432 3321   1112222222       2


Q ss_pred             CC-CCCeEEEECcccHHHHhhcCCeE-EEEecCCHHHHHHHHHHHhcCCceEEEcC
Q 014700          254 NP-RQPFIALSGPSFALELMNKLPTA-MVVASKDRKLANAVQQLLASKHLRISTSS  307 (420)
Q Consensus       254 ~~-~~~~~vl~GP~~a~ev~~g~~t~-i~ia~~d~e~~~~l~~ll~~~g~~v~~s~  307 (420)
                      .. .++.++=+.|.+..-+..+..+. ..+  ..++.++++.++.++.|..+|...
T Consensus       141 vssmHPAgvPGtp~h~~yviagr~t~g~el--ATeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKEL--ATEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             ccccCCCCCCCCCCCceEEEeccCCCceee--ccHHHHHHHHHHHHhcCCceEecC
Confidence            10 12222212222211111111111 111  246788999999999999988753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.51  E-value=1.3e-06  Score=86.98  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=75.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .|||+|||+|.||+.+|..|+..|. .+|.++|+.++..+.....-....  +.......++.++|.++ +++||+||++
T Consensus         1 ~~KV~VIGaG~vG~~iA~~la~~g~-~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIit   76 (305)
T TIGR01763         1 RKKISVIGAGFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVIT   76 (305)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence            3799999999999999999999873 289999997654321110000000  00112345777788877 7899999999


Q ss_pred             cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA  251 (420)
Q Consensus       207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~  251 (420)
                      +..                ..++++++++.++. ++.+||..+|..+     .+...+.+.
T Consensus        77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~d-----i~t~~~~~~  131 (305)
T TIGR01763        77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLD-----AMTYVAWQK  131 (305)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHH
Confidence            872                23556667777764 5678888888543     344445554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.50  E-value=1.2e-06  Score=85.49  Aligned_cols=93  Identities=13%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||||+|||+|.||..++..|.+.+.+++ +.+++|++++.+.+.+..             +....+++++.+.++|+|++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi   67 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE   67 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence            4799999999999999999987531245 457899988877765521             12455688887789999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|...+.+++.++..   .+..++.++.|
T Consensus        68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g   94 (265)
T PRK13304         68 CASVNAVEEVVPKSLE---NGKDVIIMSVG   94 (265)
T ss_pred             cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence            9999888887776654   34444444443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.50  E-value=2.3e-07  Score=92.63  Aligned_cols=124  Identities=16%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.+.|.+...|..  ......++.  .++|||||.|.+|..+|+.|..-|  .+|..|++....  ..  
T Consensus       115 R~~~~~~~~~~~~~W~~~~~~~~--~~~~~~~l~--gktvgIiG~G~IG~~va~~l~~fg--~~V~~~~~~~~~--~~--  184 (314)
T PRK06932        115 HSLMGWYRDQLSDRWATCKQFCY--FDYPITDVR--GSTLGVFGKGCLGTEVGRLAQALG--MKVLYAEHKGAS--VC--  184 (314)
T ss_pred             hChHHHHHHHHcCCCCcCccccc--cCCcccccC--CCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCccc--cc--
Confidence            55666778888887865211211  011112333  789999999999999999997655  899999875321  00  


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                       .  .             ...+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus       185 -~--~-------------~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde  240 (314)
T PRK06932        185 -R--E-------------GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDE  240 (314)
T ss_pred             -c--c-------------ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence             0  0             013789999999999999994 5577766 345667899999999999866553

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.49  E-value=1.7e-06  Score=85.26  Aligned_cols=160  Identities=14%  Similarity=0.098  Sum_probs=105.6

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADY  202 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDi  202 (420)
                      ++...+|+|||.|+||..+|..|.++|  |.|...+|.+ . ..+.+.-..             ...+++.+. -+..|+
T Consensus        49 ~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd-y-ssaa~~yg~-------------~~ft~lhdlcerhpDv  111 (480)
T KOG2380|consen   49 WKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD-Y-SSAAEKYGS-------------AKFTLLHDLCERHPDV  111 (480)
T ss_pred             cccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch-h-HHHHHHhcc-------------cccccHHHHHhcCCCE
Confidence            344679999999999999999999999  9999999987 3 344432111             111233333 357999


Q ss_pred             EEEccChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEE
Q 014700          203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAM  279 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i  279 (420)
                      |++||....++.++....+. ++.+++++....--.+     ..+.+.+.++...  ..+..+.||....+-.+|.|-.+
T Consensus       112 vLlctsilsiekilatypfqrlrrgtlfvdvlSvKef-----ek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVy  186 (480)
T KOG2380|consen  112 VLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEF-----EKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVY  186 (480)
T ss_pred             EEEEehhhhHHHHHHhcCchhhccceeEeeeeecchh-----HHHHHHHhCccccceEeecCCcCCCcCCCccccCceEE
Confidence            99999999999999877654 7788988776531122     2344556666531  11224578875554445555322


Q ss_pred             EE-----ecCCHHHHHHHHHHHhcCCceEEE
Q 014700          280 VV-----ASKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       280 ~i-----a~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      .-     +...++.++.+-++|.+.|.+.+.
T Consensus       187 dkvRig~~~~r~ercE~fleIf~cegckmVe  217 (480)
T KOG2380|consen  187 DKVRIGYAASRPERCEFFLEIFACEGCKMVE  217 (480)
T ss_pred             EEeeccccccchHHHHHHHHHHHhcCCeEEE
Confidence            11     122368899999999998887543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.47  E-value=2.6e-07  Score=92.38  Aligned_cols=124  Identities=14%  Similarity=0.156  Sum_probs=87.4

Q ss_pred             cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++-...++.++.+.|.+...+..  ..+...++.  .++|||||.|.+|..+|+.|..-|  .+|..|+|....     
T Consensus       115 ~R~~~~~~~~~~~g~W~~~~~~~~--~~~~~~~l~--gktvgIiG~G~IG~~vA~~l~~fg--m~V~~~~~~~~~-----  183 (317)
T PRK06487        115 ATRLPDYQQAVAAGRWQQSSQFCL--LDFPIVELE--GKTLGLLGHGELGGAVARLAEAFG--MRVLIGQLPGRP-----  183 (317)
T ss_pred             HcCHHHHHHHHHcCCCccCccccc--ccCcccccC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCCc-----
Confidence            366677788888998865211110  011112333  789999999999999999998655  899999875310     


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                       ..              .. ..+++++++.||+|++++|. ..++.++. +....++++.++|++..|-..++
T Consensus       184 -~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde  240 (317)
T PRK06487        184 -AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE  240 (317)
T ss_pred             -cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence             00              00 12688999999999999994 55777773 45667899999999999866553

>PLN02928 oxidoreductase family protein

Probab=98.46  E-value=4.8e-07  Score=91.54  Aligned_cols=133  Identities=11%  Similarity=0.102  Sum_probs=84.3

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|..          ..+.++.  .++|+|||+|.||..+|..|..-|  .+|++|+|....... ..
T Consensus       135 R~~~~~~~~~~~~~w~~----------~~~~~l~--gktvGIiG~G~IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~  199 (347)
T PLN02928        135 RKQNEMQISLKARRLGE----------PIGDTLF--GKTVFILGYGAIGIELAKRLRPFG--VKLLATRRSWTSEPE-DG  199 (347)
T ss_pred             hCHHHHHHHHHcCCccc----------ccccCCC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCChhhh-hh
Confidence            44455666666665532          1112333  689999999999999999999877  899999986321111 00


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+.........  ........+++++++.||+|++++|. ...+.++ ++....++++.++|++..|-..++
T Consensus       200 ~~~~~~~~~~~--~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde  269 (347)
T PLN02928        200 LLIPNGDVDDL--VDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY  269 (347)
T ss_pred             hcccccccccc--ccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH
Confidence            00000000000  00000124789999999999999994 4466666 345667899999999999866553

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.41  E-value=2.1e-06  Score=75.79  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|||+ |.+|.++|..|...+...++.++|++++.++.....-.+..+    ..+....+..+..+++++||+||++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASA----PLPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHH----GSTEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhh----hcccccccccccccccccccEEEEe
Confidence            79999999 999999999999988667899999997654332211000000    0111233333445668999999998


Q ss_pred             cCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       207 Vp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      .-.     .           .++++.+.+..+- ++.+++.++|.++     .++.++.+..+.
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~~  134 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSGF  134 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHTS
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhCc
Confidence            632     1           2445556666665 6677877887543     456666665443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.35  E-value=2.8e-06  Score=83.10  Aligned_cols=92  Identities=21%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc-CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a-G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+||+|||+|.||..++..|.+. . +++|. +|+|++++.+.+.+.. .           .....+++++.+.++|+|+
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~-~~el~aV~dr~~~~a~~~a~~~-g-----------~~~~~~~~eell~~~D~Vv   72 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLP-GLTLSAVAVRDPQRHADFIWGL-R-----------RPPPVVPLDQLATHADIVV   72 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCC-CeEEEEEECCCHHHHHHHHHhc-C-----------CCcccCCHHHHhcCCCEEE
Confidence            47999999999999999999873 2 26776 7899988777665531 1           0123457888888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|+|...+.++...+..   .++.++..+.
T Consensus        73 i~tp~~~h~e~~~~aL~---aGk~Vi~~s~   99 (271)
T PRK13302         73 EAAPASVLRAIVEPVLA---AGKKAIVLSV   99 (271)
T ss_pred             ECCCcHHHHHHHHHHHH---cCCcEEEecc
Confidence            99999888877766543   4555555443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.35  E-value=1.1e-06  Score=77.73  Aligned_cols=96  Identities=22%  Similarity=0.293  Sum_probs=67.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||.+++..|.+.| .++|++|+|+++..+.+.+.... .+     .   .....+.+++++++|+||.|
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I---AIAYLDLEELLAEADLIINT   88 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c---ceeecchhhccccCCEEEeC
Confidence            579999999999999999999885 37899999999887776554211 00     0   01234666767899999999


Q ss_pred             cChhhH--HHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFS--SSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l--~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|....  +++.. ....++++++++.++
T Consensus        89 ~~~~~~~~~~~~~-~~~~~~~~~~v~D~~  116 (155)
T cd01065          89 TPVGMKPGDELPL-PPSLLKPGGVVYDVV  116 (155)
T ss_pred             cCCCCCCCCCCCC-CHHHcCCCCEEEEcC
Confidence            997653  22111 112356788888875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.33  E-value=2.5e-06  Score=84.09  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||.++|..|...|  .+|++++|++++.+.+.+.+..            .....++++.++++|+||.+
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint  216 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT  216 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence            579999999999999999999988  8999999998776665543321            01123566778899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|...+.   ++....++++.++|++..
T Consensus       217 ~P~~ii~---~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       217 IPALVLT---ADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence            9976322   234455678889998864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.33  E-value=1.3e-06  Score=89.13  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=71.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|||||.|+||..+|..|..-|  .+|.+|++....      .+..             ....+++++++.||+|++.
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~G--~~V~~~dp~~~~------~~~~-------------~~~~~L~ell~~sDiI~lh  174 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEALG--IKTLLCDPPRAD------RGDE-------------GDFRSLDELVQEADILTFH  174 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCcccc------cccc-------------cccCCHHHHHhhCCEEEEe
Confidence            689999999999999999999877  999999864321      0100             0123789999999999999


Q ss_pred             cChhh-----HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~~~-----l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|...     ...++ ++....+++++++|+++.|-..++
T Consensus       175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe  214 (378)
T PRK15438        175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN  214 (378)
T ss_pred             CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence            99533     55555 455677889999999999866553

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.32  E-value=1.3e-06  Score=89.17  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|||||+|+||..+|..|..-|  .+|.+||+.....    + +             . ....++++++++||+|+++
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~G--~~V~~~Dp~~~~~----~-~-------------~-~~~~~l~ell~~aDiV~lh  174 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGLG--WKVLVCDPPRQEA----E-G-------------D-GDFVSLERILEECDVISLH  174 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCccccc----c-c-------------C-ccccCHHHHHhhCCEEEEe
Confidence            579999999999999999999887  9999999753210    0 1             0 1123788989999999999


Q ss_pred             cChh-----hHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPVQ-----FSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~~-----~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|..     ....++ ++....+++++++|+++.|-..++
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde  214 (381)
T PRK00257        175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN  214 (381)
T ss_pred             CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence            9954     355666 345667899999999999866553

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.29  E-value=8.7e-06  Score=81.50  Aligned_cols=115  Identities=18%  Similarity=0.277  Sum_probs=75.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~--i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+||+|||+|.||..+|..|+..|. .+|.++|++++.++.  +...+.. .+   ......+..++|.+ ++++||+||
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~-~~---~~~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS-TL---VGSNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc-cc---cCCCeEEEeCCCHH-HhCCCCEEE
Confidence            5799999999999999999998875 589999998764332  2111110 00   11123455567877 689999999


Q ss_pred             Ecc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          205 HAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       205 laV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      ++.  |.              ..++++++.+.++. ++.++|..+|..+     .+...+.+..+
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~d-----i~t~~~~~~s~  137 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLD-----CMVKVFQEKSG  137 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHH-----HHHHHHHHhhC
Confidence            998  32              23566777777764 5667777787443     33444555443

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.28  E-value=8.5e-06  Score=81.64  Aligned_cols=105  Identities=22%  Similarity=0.321  Sum_probs=69.9

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      -+.+||+|||+|.||..+|..++..|. .+|.++|++++.++  .+...+..    .-...+..+..++|.+ ++++||+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~----~~~~~~~~I~~~~d~~-~l~~aDi   77 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN----VIAGSNSKVIGTNNYE-DIAGSDV   77 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh----hccCCCeEEEECCCHH-HhCCCCE
Confidence            345799999999999999999998884 48999999887532  22111110    0011123566667875 5899999


Q ss_pred             EEEccCh---------------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          203 CLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       203 VIlaVp~---------------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ||++.-.                     ..+.++++++.++. ++.+++..+|..
T Consensus        78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~  131 (321)
T PTZ00082         78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL  131 (321)
T ss_pred             EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence            9996611                     12556667777766 455777777744

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.24  E-value=6.7e-05  Score=73.32  Aligned_cols=95  Identities=21%  Similarity=0.302  Sum_probs=75.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+||+|||.|+=|.+=|..|.++|  .+|++--|.... .+...+.|.              .+ -+.+|+++.+|+|+
T Consensus        17 kgK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim   79 (338)
T COG0059          17 KGKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVM   79 (338)
T ss_pred             cCCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEE
Confidence            3579999999999999999999999  888877665544 444455443              22 26789999999999


Q ss_pred             EccChhhHHHHHH-HhhhcCCCCCeEEEeccCCCc
Q 014700          205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +-+|+..-.++.+ +|.|.++++..+. .+-|+..
T Consensus        80 ~L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi  113 (338)
T COG0059          80 ILLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI  113 (338)
T ss_pred             EeCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence            9999999999997 8999999988654 4557653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.23  E-value=1.5e-05  Score=67.41  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=69.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiVI  204 (420)
                      +||+|||+|.+|......+.+...+.+|. +++++++..+.+.+..             ++...+|.++.+.  +.|+|+
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~   67 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI   67 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence            58999999999999998888873235665 7899998888775542             2346778888876  789999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +++|.....+++.....   .+..| .+-|.+.
T Consensus        68 I~tp~~~h~~~~~~~l~---~g~~v-~~EKP~~   96 (120)
T PF01408_consen   68 IATPPSSHAEIAKKALE---AGKHV-LVEKPLA   96 (120)
T ss_dssp             EESSGGGHHHHHHHHHH---TTSEE-EEESSSS
T ss_pred             EecCCcchHHHHHHHHH---cCCEE-EEEcCCc
Confidence            99999888777776655   34433 3456554

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.22  E-value=5.3e-06  Score=71.59  Aligned_cols=122  Identities=19%  Similarity=0.246  Sum_probs=74.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|+|+ |.||..++..+.+.. ++++. .++|+++..     .|.....+.+.. +.++.+++++++++..+|++|-
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~-----~g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAK-----VGKDVGELAGIG-PLGVPVTDDLEELLEEADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTT-----TTSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCccc-----ccchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence            69999999 999999999999843 26755 566765210     011111111112 3456778899999989999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECccc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF  267 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~  267 (420)
                      ++-...+.+.++....+   +..+|..+.|+..+..    +.+.+. ..   ...++..|+|
T Consensus        74 fT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI----DELEEL-AK---KIPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH----HHHHHH-TT---TSEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH----HHHHHH-hc---cCCEEEeCCC
Confidence            88767776766666554   6777878889875432    233332 22   2457777764

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.21  E-value=1.7e-05  Score=79.25  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.+|+++|..|+..+...++.++|++++.++-....-.+...+  ... ..+..+.|+++ +++||+||++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~--~~~-~~v~~~~dy~~-~~~adivvit   78 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF--LKN-PKIEADKDYSV-TANSKVVIVT   78 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc--CCC-CEEEECCCHHH-hCCCCEEEEC
Confidence            5799999999999999999998875568999998876443222110011111  011 25666678876 8999999996


Q ss_pred             cCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      .-.     .           .++++.+.+.++ .++.+++.++|..
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~  123 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV  123 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence            431     1           144555666666 4677788788744

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.19  E-value=1.1e-05  Score=80.44  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||+|.||..++..|...| .++|++++|++++.+.+.+...      .     .+...++..+++.++|+||.
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVi~  244 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG------G-----NAVPLDELLELLNEADVVIS  244 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC------C-----eEEeHHHHHHHHhcCCEEEE
Confidence            3689999999999999999998865 3789999999988777765421      0     11112356677889999999


Q ss_pred             ccChhhHHHHHHHhhhcC-CCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGISDYV-DPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l-~~~~iVVs~sn  234 (420)
                      |++......+++.+.... .++.++|.++.
T Consensus       245 at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         245 ATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             CCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            999766655555443322 24678888874

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.17  E-value=1.3e-05  Score=77.88  Aligned_cols=113  Identities=18%  Similarity=0.245  Sum_probs=75.6

Q ss_pred             EEEEcc-cHHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       130 I~IIGa-GamG~alA~~La~aG--~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+|||+ |.||..+|..|+..|  ...+|.++|+++++++.....-...  .... ...++..++|+.+++++||+||++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~--~~~~-~~~~i~~~~d~~~~~~~aDiVv~t   77 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDA--VEPL-ADIKVSITDDPYEAFKDADVVIIT   77 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHh--hhhc-cCcEEEECCchHHHhCCCCEEEEC
Confidence            689999 999999999999876  4468999999886654433321010  0111 234677778878889999999995


Q ss_pred             cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA  251 (420)
Q Consensus       207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~  251 (420)
                      .-.                ..++++++++.++. ++.+++..+|..+     .+...+.+.
T Consensus        78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d-----~~t~~~~~~  132 (263)
T cd00650          78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVD-----IITYLVWRY  132 (263)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHH
Confidence            421                23566667776665 6777777777443     344555554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.12  E-value=1.7e-05  Score=78.53  Aligned_cols=114  Identities=20%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~  209 (420)
                      |+|||+|.||..+|..|+..|.. +|+++|++++..+...-.-...  .........+..++|.+ ++++||+||+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~--~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA--APILGSDTKVTGTNDYE-DIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh--hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence            68999999999999999988732 9999999876432111100000  00011123456666765 48999999997731


Q ss_pred             ----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          210 ----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       210 ----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                                      ..++++++++.++. ++.++|..+|..+     .+...+.+..+
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~d-----i~t~~~~~~s~  130 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLD-----VMTYVAYKASG  130 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHHHHHHhC
Confidence                            23566777777766 4556666777433     34445555443

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.11  E-value=2.1e-05  Score=77.89  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+|++|||+|.+|..++..|...|  .+|++++|+++..+...+.|...            ....++.+.+.++|+||.+
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence            579999999999999999999988  89999999987766655543211            1113566778899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|...+   -++....++++.+||++..
T Consensus       218 ~p~~~i---~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        218 IPALVL---TKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence            996532   2344556778899988764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.09  E-value=1.4e-05  Score=79.83  Aligned_cols=94  Identities=19%  Similarity=0.284  Sum_probs=66.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +.++|+|||+|.||..++..+.. .+ ..+|++|+|++++.+.+.+.-.. .       ...+.+..++++++.+||+|+
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi  194 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIIS  194 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEE
Confidence            35799999999999999986654 33 27999999999988887664110 0       012456678888899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+++.  +.++.  ...+++++.|..+
T Consensus       195 ~aT~s~--~pvl~--~~~l~~g~~i~~i  218 (314)
T PRK06141        195 CATLST--EPLVR--GEWLKPGTHLDLV  218 (314)
T ss_pred             EeeCCC--CCEec--HHHcCCCCEEEee
Confidence            999875  23332  1456788855443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.09  E-value=2.6e-05  Score=77.56  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiVIla  206 (420)
                      +||+|||+|.+|.++|..|+..|..++|.++|++++.++.+...-.+..+.    .+..... ..+.+ .+++||+||++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            489999999999999999999874458999999987765443321000000    0111122 24554 47899999999


Q ss_pred             cChh----------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +...                .++++.+.+.++- ++.+++.++|-.
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~  120 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV  120 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence            8641                1455556666654 466777777743

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=8.1e-06  Score=80.58  Aligned_cols=72  Identities=24%  Similarity=0.287  Sum_probs=58.9

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||.| .||.+||.+|.++|  ++|++|++...                            +++++++.||+||
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVI  207 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVV  207 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEE
Confidence            36899999996 99999999999998  99999976431                            5778889999999


Q ss_pred             EccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~-l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|++... +...      +++++++||+++
T Consensus       208 savg~~~~v~~~------~ik~GaiVIDvg  231 (301)
T PRK14194        208 AAVGRPRLIDAD------WLKPGAVVIDVG  231 (301)
T ss_pred             EecCChhcccHh------hccCCcEEEEec
Confidence            9999643 3332      278899999875

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.05  E-value=3.6e-05  Score=76.70  Aligned_cols=99  Identities=16%  Similarity=0.256  Sum_probs=64.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHH-hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-i~~-~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|.+|+++|..|+..|..++|.++|++++.++. ... .+... +.+    +..+. +++.+ .+++||+||+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i~-~~d~~-~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRIY-AGDYA-DCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEEe-eCCHH-HhCCCCEEEE
Confidence            6999999999999999999998744589999998865542 111 11111 111    11222 45664 5899999999


Q ss_pred             ccChh----------------hHHHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~----------------~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +++..                .++++.+++..+- ++.+++..+|
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tN  117 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTN  117 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            98742                1455666666654 4455655565

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.03  E-value=2.9e-05  Score=72.89  Aligned_cols=171  Identities=13%  Similarity=0.214  Sum_probs=105.6

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-----------cCCCCCC--CCCC--CCCceE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYF--PEQK--LPENVI  188 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-----------g~~~~~l--~~~~--l~~~i~  188 (420)
                      |..++.|+|||+|.||+-+|+..+.+|  ++|.++|++++.+.+..+.           +......  ..+.  .-..++
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            455779999999999999999999999  9999999998765443321           1100000  0000  012456


Q ss_pred             EeCCHHHhccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCeEEEEC
Q 014700          189 ATTDAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG  264 (420)
Q Consensus       189 a~td~~eal~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~--~lg~~~~~~~vl~G  264 (420)
                      .+++..+++.++|+||-++-.  +.-+.++++|....++++++.+-+..+...   .+...+++  .+++    . -+..
T Consensus        86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G----l-HFfN  157 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG----L-HFFN  157 (298)
T ss_pred             HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce----e-eccC
Confidence            678888999999999988763  346778888888888888877655444321   11111111  1111    1 1123


Q ss_pred             cccHH---HHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       265 P~~a~---ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                      |.-..   |+..+       ...+++.++.+..+-...|...+.+.|--|
T Consensus       158 PvPvMKLvEVir~-------~~TS~eTf~~l~~f~k~~gKttVackDtpG  200 (298)
T KOG2304|consen  158 PVPVMKLVEVIRT-------DDTSDETFNALVDFGKAVGKTTVACKDTPG  200 (298)
T ss_pred             CchhHHHhhhhcC-------CCCCHHHHHHHHHHHHHhCCCceeecCCCc
Confidence            33222   22111       123567778888877777887777777654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.02  E-value=1.8e-05  Score=69.20  Aligned_cols=75  Identities=25%  Similarity=0.382  Sum_probs=57.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.+|.+++..|.+.|. .+|++++|+.++++.+.+.....      .  -.+...+++.+.+.++|+||.|
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~------~--~~~~~~~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGV------N--IEAIPLEDLEEALQEADIVINA   82 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGC------S--EEEEEGGGHCHHHHTESEEEE-
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCcc------c--cceeeHHHHHHHHhhCCeEEEe
Confidence            5799999999999999999999983 45999999999998887753110      0  0123345666678899999999


Q ss_pred             cChh
Q 014700          207 MPVQ  210 (420)
Q Consensus       207 Vp~~  210 (420)
                      +|..
T Consensus        83 T~~~   86 (135)
T PF01488_consen   83 TPSG   86 (135)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            9964

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.98  E-value=0.00016  Score=75.25  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=73.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~a-------G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      .-||+|||+ |.+|+++|..|+..       +...++.++|++++.++-..-.-.+.-    ..+...+.+.++..+.++
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa----~~~~~~v~i~~~~ye~~k  175 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSL----YPLLREVSIGIDPYEVFQ  175 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhh----hhhcCceEEecCCHHHhC
Confidence            569999999 99999999999987       533478899998876543221100000    011123554444446689


Q ss_pred             CCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          199 GADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       199 ~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +||+||++--.                ..++++.+.|.++..++.+||.++|-.+     .+..++.+..|
T Consensus       176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD-----v~t~v~~k~sg  241 (444)
T PLN00112        176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN-----TNALICLKNAP  241 (444)
T ss_pred             cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH-----HHHHHHHHHcC
Confidence            99999997432                1245556666665567788888887543     33344445444

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.97  E-value=5.9e-05  Score=74.87  Aligned_cols=112  Identities=12%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~  209 (420)
                      |+|||+|.+|+++|..|+..|..+++.++|++++.++.....-.+..  .... ...+...++.+ .+++||+||++...
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~--~~~~-~~~i~~~~~~~-~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHAS--AFLA-TGTIVRGGDYA-DAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhc--cccC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence            68999999999999999988754689999998876554443210000  0011 12344445654 58999999998753


Q ss_pred             h----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 014700          210 Q----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA  251 (420)
Q Consensus       210 ~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~  251 (420)
                      .                .++++.+.|..+- ++.+++..+|-.+     .+...+.+.
T Consensus        77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d-----~~~~~~~~~  128 (300)
T cd00300          77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVD-----ILTYVAQKL  128 (300)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHH-----HHHHHHHHH
Confidence            1                1455666666655 6677777777432     344445444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.96  E-value=1.7e-05  Score=81.81  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .++|+|||.|++|.+-|..|...|  ++|++--|..      +.-+...+.|.              .+ .+++|+++.|
T Consensus        36 gKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~A   98 (487)
T PRK05225         36 GKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQA   98 (487)
T ss_pred             CCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHhC
Confidence            589999999999999999999998  8888555542      22223333332              11 3688999999


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++.+|...-..+.+++.++++++..+. .+-|+.
T Consensus        99 DvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFn  134 (487)
T PRK05225         99 DLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFN  134 (487)
T ss_pred             CEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCce
Confidence            999999998877777788999999988764 344654

>PRK15076 alpha-galactosidase; Provisional

Probab=97.95  E-value=3.7e-05  Score=80.04  Aligned_cols=80  Identities=21%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             CCeEEEEcccHHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~--~La-~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      |+||+|||+|.||.+.+.  .++ ..+. +.+|.++|++++.++..... .. ..+.....+..+..++|..+++++||+
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~-~~~~~~~~~~~i~~ttD~~eal~dADf   78 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-AR-KLAESLGASAKITATTDRREALQGADY   78 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HH-HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence            479999999999977766  554 1111 26999999999876543221 00 001111123467788898888999999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      ||.++-
T Consensus        79 Vv~ti~   84 (431)
T PRK15076         79 VINAIQ   84 (431)
T ss_pred             EeEeee
Confidence            998864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.92  E-value=4.7e-05  Score=77.72  Aligned_cols=86  Identities=19%  Similarity=0.280  Sum_probs=62.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||||.|||+|.+|++.|..|++++ +.+|++.+|+.+.++++.+... ..+.   ..+  .+.-...+.+++++.|+||.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence            689999999999999999999997 4899999999999998876531 1110   000  00111235577889999999


Q ss_pred             ccChhhHHHHHHH
Q 014700          206 AMPVQFSSSFLEG  218 (420)
Q Consensus       206 aVp~~~l~~vl~~  218 (420)
                      |.|......+++.
T Consensus        75 ~~p~~~~~~i~ka   87 (389)
T COG1748          75 AAPPFVDLTILKA   87 (389)
T ss_pred             eCCchhhHHHHHH
Confidence            9998765555543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.90  E-value=6.1e-05  Score=75.63  Aligned_cols=96  Identities=17%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+++|||+|.+|.+.+..|.....-.+|.+|+|++++.+.+.+.-.  .      +...+.+.+++++++++||+|+.
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~--~------~g~~v~~~~~~~eav~~aDiVit  198 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS--D------YEVPVRAATDPREAVEGCDILVT  198 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH--h------hCCcEEEeCCHHHHhccCCEEEE
Confidence            457999999999999977776543222799999999998877655310  0      01135667899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|+..  .++.  ...+++++.|..+.
T Consensus       199 aT~s~~--P~~~--~~~l~~g~~v~~vG  222 (325)
T TIGR02371       199 TTPSRK--PVVK--ADWVSEGTHINAIG  222 (325)
T ss_pred             ecCCCC--cEec--HHHcCCCCEEEecC
Confidence            999743  1121  23467888876653

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=3.4e-05  Score=76.18  Aligned_cols=71  Identities=23%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~-r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..++|+||| .|.||.+||.+|.++|  ++|++|+ |++                             +++++++.||+|
T Consensus       157 ~Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIV  205 (296)
T PRK14188        157 SGLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADIL  205 (296)
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence            468999999 9999999999999998  9999995 542                             356777899999


Q ss_pred             EEccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700          204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~-l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |.|++... +++      .+++++++||++.
T Consensus       206 Isavg~~~~v~~------~~lk~GavVIDvG  230 (296)
T PRK14188        206 VAAVGRPEMVKG------DWIKPGATVIDVG  230 (296)
T ss_pred             EEecCChhhcch------heecCCCEEEEcC
Confidence            99999654 332      2377899998873

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.87  E-value=0.0001  Score=73.74  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVI  204 (420)
                      ..+||+|||+|.+|.++|..|+..|...++.++|++++.++.....-.+...     +...+... ++. +.+++||+||
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~-~~~~~adivI   78 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDY-SDCKDADLVV   78 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCH-HHhCCCCEEE
Confidence            4579999999999999999999887433899999987654333221101000     10122333 454 4589999999


Q ss_pred             EccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++--.     .           .++++++.+.++- ++.+++..+|-.
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~  125 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPV  125 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcH
Confidence            96432     0           1444555555543 466777777743

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.86  E-value=7.8e-05  Score=72.35  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|||+|+|+ |.||..++..+.+.. ++++. +++++++..... .             ..++..++|+++++.++|+||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi   65 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI   65 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence            479999998 999999999887653 26666 467776533221 0             012345568888888899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .++++....+.+.....   .+..+|..+.|+..+.
T Consensus        66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~   98 (257)
T PRK00048         66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ   98 (257)
T ss_pred             ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence            88888777766655544   4555555566777653

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=97.86  E-value=4.4e-05  Score=75.44  Aligned_cols=123  Identities=15%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      +|...+++-.++.|.|++.        ..++.+++  .++++|||.|.+|+-+|.++..-|  ..|+.+|.-. ..+...
T Consensus       119 aR~i~~A~~s~k~g~wnr~--------~~~G~el~--GKTLgvlG~GrIGseVA~r~k~~g--m~vI~~dpi~-~~~~~~  185 (406)
T KOG0068|consen  119 ARQIGQASASMKEGKWNRV--------KYLGWELR--GKTLGVLGLGRIGSEVAVRAKAMG--MHVIGYDPIT-PMALAE  185 (406)
T ss_pred             hhhcchhheeeecCceeec--------ceeeeEEe--ccEEEEeecccchHHHHHHHHhcC--ceEEeecCCC-chHHHH
Confidence            3666777777888977774        45566777  889999999999999999998877  7787777432 112333


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHHHH-hhhcCCCCCeEEEeccCCCcch
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEG-ISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~~-i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ..|              ++.. +++|++..||+|-+-+|. ..++.++.. ....+++|..||+++.|-..++
T Consensus       186 a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe  243 (406)
T KOG0068|consen  186 AFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE  243 (406)
T ss_pred             hcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence            333              2222 678999999999999994 557777743 3455788999999999866553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.85  E-value=7.7e-05  Score=71.00  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCC---HHHh-ccCCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td---~~ea-l~~aDi  202 (420)
                      |+|.|||+|.+|..+|..|.+.|  |+|.+++++++.+++.........         .+.. .++   ++++ +.++|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~---------~v~gd~t~~~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTH---------VVIGDATDEDVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceE---------EEEecCCCHHHHHhcCCCcCCE
Confidence            79999999999999999999998  999999999998877443211100         0111 112   3444 668999


Q ss_pred             EEEccChhhHHHHHHHhhhc-CCCCCeEE
Q 014700          203 CLHAMPVQFSSSFLEGISDY-VDPGLPFI  230 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~-l~~~~iVV  230 (420)
                      ++.++..+....++-.+... +.-..++.
T Consensus        70 vva~t~~d~~N~i~~~la~~~~gv~~via   98 (225)
T COG0569          70 VVAATGNDEVNSVLALLALKEFGVPRVIA   98 (225)
T ss_pred             EEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence            99999988877777666533 44334443

>PLN02602 lactate dehydrogenase

Probab=97.82  E-value=0.00019  Score=72.81  Aligned_cols=102  Identities=20%  Similarity=0.382  Sum_probs=66.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +||+|||+|.+|+++|..|+..+...++.++|++++.++.....  +... +++    ...+....+.++ +++||+||+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~~----~~~i~~~~dy~~-~~daDiVVi  111 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FLP----RTKILASTDYAV-TAGSDLCIV  111 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cCC----CCEEEeCCCHHH-hCCCCEEEE
Confidence            69999999999999999999887545899999987654322211  1110 110    123444457765 899999999


Q ss_pred             ccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +--.                ..++++.+.|..+ .++.++|.++|-.
T Consensus       112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv  157 (350)
T PLN02602        112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV  157 (350)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence            8421                1234555566664 3567788788754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.81  E-value=0.0001  Score=66.43  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      .++++-..+++.|+|.|.+|..+|..|...|  .+|++++++|-.+-+....|.              .+. +.+++++.
T Consensus        16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dGf--------------~v~-~~~~a~~~   78 (162)
T PF00670_consen   16 ATNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDGF--------------EVM-TLEEALRD   78 (162)
T ss_dssp             HH-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--HHHHTTT
T ss_pred             cCceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcCc--------------Eec-CHHHHHhh
Confidence            3567777899999999999999999999988  899999999865433333332              332 67899999


Q ss_pred             CcEEEEccChhhH--HHHHHHhhhcCCCCCeEEEec
Q 014700          200 ADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       200 aDiVIlaVp~~~l--~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|++|.++-...+  .+-+    ..+++++++.++.
T Consensus        79 adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G  110 (162)
T PF00670_consen   79 ADIFVTATGNKDVITGEHF----RQMKDGAILANAG  110 (162)
T ss_dssp             -SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred             CCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence            9999999886542  3333    3366777776654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.80  E-value=0.00026  Score=69.11  Aligned_cols=126  Identities=16%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEE-EEeCCH-HHH-HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~-l~~r~~-~~~-~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ||||+|+| +|.||..++..+.+.. ++++. +++|.. +.. +.+.+.       .+. .+.++.+++|+++...++|+
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~-------~~~-~~~gv~~~~d~~~l~~~~Dv   71 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGEL-------AGI-GKVGVPVTDDLEAVETDPDV   71 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHh-------cCc-CcCCceeeCCHHHhcCCCCE
Confidence            47999999 5999999999998752 36666 466432 211 111110       000 01135667788886456899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      ||.++++..+.+.+.....   .+..+|..+.|+..+..+.+.+..++      ....++.+|++.-.
T Consensus        72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSlG  130 (266)
T TIGR00036        72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSIG  130 (266)
T ss_pred             EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccHH
Confidence            9999998888777766544   45666666668865533333222221      12456777777653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.80  E-value=0.00028  Score=66.36  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+|++||+|++|..+...+...-.+ .-|.+|||+.+++..+.+.-.             .+..++++|.+.+.|+++-|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence            6899999999999999988754111 356789999998887766321             12236888888999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      -..+++++...++... ..+.+|+|+
T Consensus        68 AS~~Av~e~~~~~L~~-g~d~iV~SV   92 (255)
T COG1712          68 ASPEAVREYVPKILKA-GIDVIVMSV   92 (255)
T ss_pred             CCHHHHHHHhHHHHhc-CCCEEEEec
Confidence            9999999888777542 123444443

>PRK05442 malate dehydrogenase; Provisional

Probab=97.78  E-value=7.6e-05  Score=74.93  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=68.3

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHH----HHHHhcCCCCCCCCCCCCCceEEeC
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQ----SINEKHCNCRYFPEQKLPENVIATT  191 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~~--~~~----~i~~~g~~~~~l~~~~l~~~i~a~t  191 (420)
                      |++++||+|||+ |.+|+.+|..|...+.-.     ++.++|+++.  +++    .+..  ...      .+...+.+++
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~--~~~------~~~~~~~i~~   72 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDD--CAF------PLLAGVVITD   72 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhh--hhh------hhcCCcEEec
Confidence            456789999998 999999999998766323     7999998542  111    1111  100      0111234444


Q ss_pred             CHHHhccCCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          192 DAKTALLGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       192 d~~eal~~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +..+.+++||+||++--.                ..++++.++|.++.+++.+++.++|-++
T Consensus        73 ~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  134 (326)
T PRK05442         73 DPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN  134 (326)
T ss_pred             ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence            555668999999986421                1255666677776666788888888554

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.78  E-value=0.00022  Score=69.56  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||||+|||+|+||..++..|.+.. +.++... +++.. .+...+..           ...+.+++|+++...+.|+|+.
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve   67 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE   67 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence            579999999999999999998753 2565543 34322 11211110           0124566788776456899999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|...+.+....+..   .+.-++..+.|
T Consensus        68 ~t~~~~~~e~~~~aL~---aGk~Vvi~s~~   94 (265)
T PRK13303         68 CAGHAALKEHVVPILK---AGIDCAVISVG   94 (265)
T ss_pred             CCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence            9999887766665543   45666655554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.78  E-value=0.00013  Score=72.80  Aligned_cols=107  Identities=14%  Similarity=0.313  Sum_probs=65.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+ |.+|..++..|+..|...+|+++||++ ..+.+......... +........+..++|.++ +++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence            79999998 999999999999988434699999954 12222211110000 000001123555567654 899999999


Q ss_pred             ccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++..                ..++++.+.|.++. ++.++|..+|.++
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd  125 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD  125 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence            9752                12455556666655 4566766776544

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.77  E-value=0.00022  Score=71.03  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=63.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEEEEcc
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM  207 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiVIlaV  207 (420)
                      ||+|||+|.+|+++|..|+..+...++.++|++++.++-....-.+..   .+.....+++ ..|.+ .+++||+||++.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~---~~~~~~~~~i~~~~y~-~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT---ALTYSTNTKIRAGDYD-DCADADIIVITA   76 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh---ccCCCCCEEEEECCHH-HhCCCCEEEECC
Confidence            799999999999999999988754589999998754322111100000   0000112233 34554 589999999975


Q ss_pred             Ch-----hh-------------HHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          208 PV-----QF-------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       208 p~-----~~-------------l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      -.     ..             ++++.+.+..+- ++.+++.++|..+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvD  123 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLD  123 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHH
Confidence            31     11             233444455544 5778888888543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.76  E-value=0.0002  Score=66.91  Aligned_cols=89  Identities=12%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .|+|+|+|+|+||..+|..|.+.|  ++|+++|++++.++.+.+.. .            .... +.++.. .+||+++-
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~-g------------~~~v-~~~~l~~~~~Dv~vp   91 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELF-G------------ATVV-APEEIYSVDADVFAP   91 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEE-cchhhccccCCEEEe
Confidence            579999999999999999999998  89999999998877776531 0            1222 223333 37999996


Q ss_pred             ccChh-hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |.... -..+.++++    + ..+|+.-.|+-
T Consensus        92 ~A~~~~I~~~~~~~l----~-~~~v~~~AN~~  118 (200)
T cd01075          92 CALGGVINDDTIPQL----K-AKAIAGAANNQ  118 (200)
T ss_pred             cccccccCHHHHHHc----C-CCEEEECCcCc
Confidence            65533 233444443    2 45777777763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.76  E-value=0.00019  Score=74.44  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ....++|+|+|+|.+|..+|..|...|  .+|+++++++.+.......|.              .+ .+++++++.+|+|
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVV  271 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIF  271 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEE
Confidence            345689999999999999999999988  799999999876544333221              11 2567888899999


Q ss_pred             EEccChhhHHHHHH-HhhhcCCCCCeEEEec
Q 014700          204 LHAMPVQFSSSFLE-GISDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~l~~vl~-~i~~~l~~~~iVVs~s  233 (420)
                      |.++....   +++ .....++++.+++++.
T Consensus       272 I~aTG~~~---vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        272 VTATGNKD---VITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             EECCCCHH---HHHHHHHhcCCCCCEEEEcC
Confidence            99986533   343 4556678888888764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.75  E-value=0.0001  Score=77.05  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=67.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||.|.+|..+|..|...|  .+|+++++++.........|              +.. .+++++++.+|+|++
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G--------------~~~-~~leell~~ADIVI~  315 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEG--------------YQV-VTLEDVVETADIFVT  315 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcC--------------cee-ccHHHHHhcCCEEEE
Confidence            4689999999999999999999877  89999998876543322222              111 257788899999999


Q ss_pred             ccChhhHHHHH-HHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl-~~i~~~l~~~~iVVs~snG  235 (420)
                      ++..   ..++ .+....++++.+++++..+
T Consensus       316 atGt---~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        316 ATGN---KDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence            9753   3344 2455667899999998665

>PLN00203 glutamyl-tRNA reductase

Probab=97.74  E-value=0.00016  Score=76.95  Aligned_cols=98  Identities=15%  Similarity=0.262  Sum_probs=68.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+...      +...  .+...++..+++.++|+||.|
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~------g~~i--~~~~~~dl~~al~~aDVVIsA  336 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP------DVEI--IYKPLDEMLACAAEADVVFTS  336 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC------CCce--EeecHhhHHHHHhcCCEEEEc
Confidence            5799999999999999999998872 479999999998888876421      1000  112234666778999999999


Q ss_pred             cChhh---HHHHHHHhhhcC---CCCCeEEEec
Q 014700          207 MPVQF---SSSFLEGISDYV---DPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~---l~~vl~~i~~~l---~~~~iVVs~s  233 (420)
                      +++..   ..+.++.+.+.-   ....++|+++
T Consensus       337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence            97532   555666553221   1224677775

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.74  E-value=0.00016  Score=72.66  Aligned_cols=94  Identities=11%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +..+|+|||+|.+|...+..++. .+. .+|.+|+|++++.+++.+.-.. .      ++..+...+++++++.++|+|+
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi  197 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIV  197 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEE
Confidence            45789999999999988877754 332 6899999999988777653100 0      0112455678888999999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+|+..  .++.   ..+++++.|+.+
T Consensus       198 ~aT~s~~--p~i~---~~l~~G~hV~~i  220 (325)
T PRK08618        198 TVTNAKT--PVFS---EKLKKGVHINAV  220 (325)
T ss_pred             EccCCCC--cchH---HhcCCCcEEEec
Confidence            9999763  2332   456788888765

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.74  E-value=0.00015  Score=61.95  Aligned_cols=100  Identities=19%  Similarity=0.306  Sum_probs=63.8

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||+|+|+ |.+|..++..|.+.. ++++..+ +++.+..+.+...+....   ..... .. ...+.+  ..++|+||+|
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~-~~~l~av~~~~~~~~~~~~~~~~~~~---~~~~~-~~-~~~~~~--~~~~DvV~~~   72 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHP-DFEVVALAASARSAGKRVSEAGPHLK---GEVVL-EL-EPEDFE--ELAVDIVFLA   72 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCC-CceEEEEEechhhcCcCHHHHCcccc---ccccc-cc-ccCChh--hcCCCEEEEc
Confidence            6999995 999999999998852 2677755 555433334433321110   00000 00 001232  2489999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|.....+++..+.+.+.+++++|+++.-+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       73 LPHGVSKEIAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             CCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence            999988888776666678899999988643

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.73  E-value=0.00019  Score=71.53  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe---CCHHHhccCCcEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~---td~~eal~~aDiV  203 (420)
                      |||+|||+ |.+|+++|..|+..+...++.++|++  .++     |... .+.....+..++..   +|+.+.+++||+|
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~al-DL~~~~~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAA-DLSHINTPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeeh-HhHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence            69999999 99999999999887754589999987  111     1100 01111112245542   2344568999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      |++.-.                ..++++.+.+.++ .++.++|.++|..+.-+ ..+...+.+..+
T Consensus        73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~-~i~t~~~~~~s~  136 (310)
T cd01337          73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTV-PIAAEVLKKAGV  136 (310)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHH-HHHHHHHHHhcC
Confidence            987532                1245555666665 46888888998654210 112455555544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.71  E-value=0.0003  Score=72.51  Aligned_cols=91  Identities=15%  Similarity=0.073  Sum_probs=67.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ...++|+|+|+|.+|..+|..+...|  .+|+++++++.+.......|.              .+ .+++++++.+|+||
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI  255 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI  255 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence            34679999999999999999999888  899999999865443333221              11 24567788999999


Q ss_pred             EccChhhHHHHHH-HhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~snG  235 (420)
                      .++....   ++. +....++++.+++++.-+
T Consensus       256 taTG~~~---vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       256 TATGNKD---VIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             ECCCCHH---HHHHHHHhcCCCCcEEEEECCC
Confidence            9887543   333 355677889999887653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.68  E-value=0.00014  Score=75.61  Aligned_cols=97  Identities=22%  Similarity=0.289  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||+|.||..++..|...|. .+|++++|++++.+.+.+...      .     .+....+..+++.++|+||.
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVI~  248 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG------G-----EAIPLDELPEALAEADIVIS  248 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC------C-----cEeeHHHHHHHhccCCEEEE
Confidence            35799999999999999999998872 389999999988776665421      0     11122356667889999999


Q ss_pred             ccChhh---HHHHHHHhh-hcCCCCCeEEEecc
Q 014700          206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~---l~~vl~~i~-~~l~~~~iVVs~sn  234 (420)
                      |+++..   ..+.++... ..-..+.+++++..
T Consensus       249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            998643   233333322 11123467788764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.64  E-value=0.00023  Score=74.12  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-hcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      |+|.|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+ .+.... ..+.      .-...++++ +.++|.||+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~-~gd~------~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTV-VGNG------SSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEE-EeCC------CCHHHHHHcCCCcCCEEEE
Confidence            68999999999999999999988  899999999998888765 221110 0110      001123444 678999999


Q ss_pred             ccChhhHHHHHHHhh
Q 014700          206 AMPVQFSSSFLEGIS  220 (420)
Q Consensus       206 aVp~~~l~~vl~~i~  220 (420)
                      +++.+.....+....
T Consensus        72 ~~~~~~~n~~~~~~~   86 (453)
T PRK09496         72 VTDSDETNMVACQIA   86 (453)
T ss_pred             ecCChHHHHHHHHHH
Confidence            999876555443333

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.63  E-value=0.00026  Score=70.97  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCH---HHhccC
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG  199 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~---~eal~~  199 (420)
                      .|+||+|||+ |.+|+.+|..|+..+...++.++|++....+  .+..  ..        ....+...+|+   .+++++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~--~~--------~~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSH--ID--------TPAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhh--cC--------cCceEEEecCCCchHHHhCC
Confidence            3679999998 9999999999996664468999998421111  1111  00        01134433332   467899


Q ss_pred             CcEEEEccCh--h--------------hHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          200 ADYCLHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       200 aDiVIlaVp~--~--------------~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|+||++.-.  .              .++++++.+..+ .++.+|+..+|+++.
T Consensus        77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv  130 (321)
T PTZ00325         77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS  130 (321)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence            9999987532  1              233444455444 456788888887654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00031  Score=69.92  Aligned_cols=93  Identities=12%  Similarity=0.121  Sum_probs=67.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +.++|+|||+|.+|...+..+.. .+. .+|.+|+|++++.+.+.+.-..      .  ...+. ..+.++++.++|+|+
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~------~--~~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA------L--GPTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh------c--CCeeE-ECCHHHHhhcCCEEE
Confidence            35799999999999999999975 332 5899999999988877664210      0  00122 467888899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+|+..  .++.   ..+++++.|..+.
T Consensus       194 taT~s~~--Pl~~---~~~~~g~hi~~iG  217 (304)
T PRK07340        194 TATTSRT--PVYP---EAARAGRLVVAVG  217 (304)
T ss_pred             EccCCCC--ceeC---ccCCCCCEEEecC
Confidence            9999764  2232   2357888776653

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.62  E-value=0.00015  Score=62.10  Aligned_cols=97  Identities=18%  Similarity=0.304  Sum_probs=62.4

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhccCCcEEEE
Q 014700          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH  205 (420)
Q Consensus       129 kI~IIG-aGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~~aDiVIl  205 (420)
                      ||+||| .|.+|..+...|.+.- ..++. ++.+++..-+.+........   +   ...+.+.+ +.++ +.++|+||+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~~~~~~~~~~-~~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFPHPK---G---FEDLSVEDADPEE-LSDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTGGGT---T---TEEEBEEETSGHH-HTTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhccccc---c---ccceeEeecchhH-hhcCCEEEe
Confidence            799999 8999999999999853 35655 45555522223333211000   0   01222222 4444 689999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+|.....++...+.   +++..||+++.-+
T Consensus        73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~  100 (121)
T PF01118_consen   73 ALPHGASKELAPKLL---KAGIKVIDLSGDF  100 (121)
T ss_dssp             -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred             cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence            999998888887774   3678899987543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.62  E-value=0.0005  Score=68.35  Aligned_cols=104  Identities=18%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiVIl  205 (420)
                      |||+|||+|.+|+++|..|...+.+.++.++|+.++..+-..   ....+-.- .+.....+..  +.+ .++++|+|++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a---~DL~~~~~-~~~~~~~i~~~~~y~-~~~~aDiVvi   75 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVA---LDLSHAAA-PLGSDVKITGDGDYE-DLKGADIVVI   75 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchh---cchhhcch-hccCceEEecCCChh-hhcCCCEEEE
Confidence            699999999999999999988776569999999854322110   00000000 1112233333  344 4899999999


Q ss_pred             cc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +-  |-              ..++++.+++..+. ++.+++.++|.++
T Consensus        76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD  122 (313)
T COG0039          76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVD  122 (313)
T ss_pred             eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHH
Confidence            76  31              12445556666655 4778888888554

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.62  E-value=0.00034  Score=72.61  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+...      .     ......++.+++.++|+||.|
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g------~-----~~i~~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG------G-----EAVKFEDLEEYLAEADIVISS  247 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC------C-----eEeeHHHHHHHHhhCCEEEEC
Confidence            4799999999999999999998773 689999999987776665311      0     011123566778899999999


Q ss_pred             cChhh---HHHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQF---SSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +++..   ..+.++.....-+...+++++..
T Consensus       248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence            98543   22333332211112346777753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.61  E-value=0.00048  Score=69.14  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVC--QSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~--~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      +..||+|||+ |.+|+++|..|...+.-.     ++.++|+.+  +++  +.+--.+....+.      .+..+..+..+
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~   75 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEE   75 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHH
Confidence            3579999998 999999999999877423     799999854  212  1111111110111      12233344445


Q ss_pred             hccCCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh
Q 014700          196 ALLGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL  252 (420)
Q Consensus       196 al~~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l  252 (420)
                      .+++||+||++--.                ..++++.++|.++-+++.+++.++|-++     .+..++.+..
T Consensus        76 ~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD-----v~t~v~~k~s  143 (323)
T TIGR01759        76 AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN-----TNALIASKNA  143 (323)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH-----HHHHHHHHHc
Confidence            68999999987421                1255666777777655788888887543     3334444544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.59  E-value=0.00024  Score=71.29  Aligned_cols=105  Identities=16%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHH--HHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQS--INEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~~~--~~~--i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      .+||+|||+ |.+|+++|..|+..+..-     ++.++|+.+..  ++.  +--.+...      .+...+.+.++..+.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~------~~~~~~~i~~~~~~~   75 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF------PLLAEIVITDDPNVA   75 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc------cccCceEEecCcHHH
Confidence            469999999 999999999999877423     79999985421  111  10001100      111123444444466


Q ss_pred             ccCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          197 LLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       197 l~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +++||+||++--.     .           .++++.++|.++-+++.++|.++|-++
T Consensus        76 ~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD  132 (322)
T cd01338          76 FKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN  132 (322)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence            8999999997422     1           255566667676645777777787543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.57  E-value=0.006  Score=62.11  Aligned_cols=231  Identities=15%  Similarity=0.160  Sum_probs=135.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC-CCCC-CCC------CCCCceE---EeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CRYF-PEQ------KLPENVI---ATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~-~~~l-~~~------~l~~~i~---a~td~~e  195 (420)
                      |.+|.|+|+|..+--+|..|.+.+ .+.|-+..|...+.+++.+.-.. ...+ ...      .+...+.   +..+.++
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~   79 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE   79 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence            468999999999999999999876 46899999977666555432111 0000 000      0111111   3457788


Q ss_pred             hccCCcEEEEccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE---CcccHH--
Q 014700          196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS---GPSFAL--  269 (420)
Q Consensus       196 al~~aDiVIlaVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~---GP~~a~--  269 (420)
                      ...+-|.+|+|||+++..+++++|. ..++.=+.||.++..++..  ..+...+.+. +.. ..+..++   |.....  
T Consensus        80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~~-~EVISFStY~gdTr~~d~  155 (429)
T PF10100_consen   80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GPD-AEVISFSTYYGDTRWSDG  155 (429)
T ss_pred             hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CCC-ceEEEeecccccceeccC
Confidence            7788999999999999999999984 3455445666677666643  2334444432 211 1111111   111100  


Q ss_pred             ----H-HhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH--------HHHHHHHHHHHHH-hc-
Q 014700          270 ----E-LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA--------LKNVLAIAAGIVV-GM-  332 (420)
Q Consensus       270 ----e-v~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a--------lkNv~Ai~~G~~~-gl-  332 (420)
                          . +..+....+.+++  .+...+++++.+|+..|+.+...+....+|-...        +.|-+++.+-... .. 
T Consensus       156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~  235 (429)
T PF10100_consen  156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP  235 (429)
T ss_pred             CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence                0 1112122345554  3456789999999999999999888777765322        2222333222111 11 


Q ss_pred             ----c---cch--hHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          333 ----N---LGN--NSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       333 ----~---lg~--N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                          |   -|.  .....-+...-+||..+-.++|+++-
T Consensus       236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~  274 (429)
T PF10100_consen  236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPF  274 (429)
T ss_pred             ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence                1   122  12223356667899999999998743

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.57  E-value=0.00035  Score=70.24  Aligned_cols=95  Identities=20%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +.++|+|||+|.+|.+.+..|.....-.+|.+|+|++++++.+.+.... .      +...+...+|+++++.++|+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEE
Confidence            3579999999999999888887532126899999999998888764211 0      01124556788899999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      |+|+..  .++..  ..+++++.|..
T Consensus       204 aT~s~~--p~i~~--~~l~~g~~v~~  225 (330)
T PRK08291        204 TTPSEE--PILKA--EWLHPGLHVTA  225 (330)
T ss_pred             eeCCCC--cEecH--HHcCCCceEEe
Confidence            999753  22211  22456666544

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.57  E-value=8.1e-05  Score=69.97  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-----------i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      .-||+|+|.|.+|+++|..++..|  ++|.+||..++.++.           +.+.|.-...+....--.-|..+++++|
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            459999999999999999999998  999999999876432           2222211000000000113456789999


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      ++++|=.|--|+|..  .-+.+.+++-..+.+.+++-+.+..+.+
T Consensus        81 ~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mp  125 (313)
T KOG2305|consen   81 LVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMP  125 (313)
T ss_pred             HHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccCh
Confidence            999999999999964  3556667777777777766665555544

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.56  E-value=0.00037  Score=69.59  Aligned_cols=98  Identities=19%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+++|||+|..|..-+..|...-.-.+|.+|+|+++.++++.+.-..        +...+...+|+++++++||+|+.
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~t  198 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVT  198 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEE
Confidence            3568999999999999988887632126899999999988877664211        11246778899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+++.....++.  ...+++++.|..+.
T Consensus       199 aT~s~~~~P~~~--~~~l~~g~hi~~iG  224 (313)
T PF02423_consen  199 ATPSTTPAPVFD--AEWLKPGTHINAIG  224 (313)
T ss_dssp             ----SSEEESB---GGGS-TT-EEEE-S
T ss_pred             ccCCCCCCcccc--HHHcCCCcEEEEec
Confidence            999755111121  34677888887664

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PLN02494 adenosylhomocysteinase

Probab=97.55  E-value=0.00041  Score=72.44  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=66.7

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ...++|+|+|+|.+|..+|..+...|  .+|+++++++.+.......|.              .. .+.+++++.+|+||
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~v-v~leEal~~ADVVI  314 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QV-LTLEDVVSEADIFV  314 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------ee-ccHHHHHhhCCEEE
Confidence            34689999999999999999998877  899999998865433333332              11 15678888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      .++....+  +.++....++++.+++++..
T Consensus       315 ~tTGt~~v--I~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        315 TTTGNKDI--IMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             ECCCCccc--hHHHHHhcCCCCCEEEEcCC
Confidence            97775542  11344556788999998865

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.54  E-value=0.00045  Score=68.99  Aligned_cols=116  Identities=14%  Similarity=0.178  Sum_probs=72.3

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-C--CHHHhccCCcEEE
Q 014700          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-T--DAKTALLGADYCL  204 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-t--d~~eal~~aDiVI  204 (420)
                      ||+|||+ |++|+++|..|+..+...++.++|+++..       |... .+.....+..+..+ .  ++.+++++||+||
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~-DL~~~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAA-DLSHIPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEc-hhhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence            7999999 99999999999888744589999987621       2111 11111112245542 2  3356799999999


Q ss_pred             EccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          205 HAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       205 laVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      ++.-.                ..++++.+.+..+ .++.++|.++|..+... ..+...+.+..|-
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~-~i~t~~~~~~sg~  136 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTV-PIAAEVLKKKGVY  136 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHH-HHHHHHHHHhcCC
Confidence            87532                1245555666665 47888888998654211 1245555555443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.53  E-value=0.00063  Score=70.35  Aligned_cols=90  Identities=13%  Similarity=0.119  Sum_probs=67.7

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ...++|+|+|+|.+|..++..+...|  .+|+++++++.+.+...+.|.              ... +.+++++++|+||
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI  262 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFV  262 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEE
Confidence            34679999999999999999999988  799999999887666555442              111 3467788999999


Q ss_pred             EccChhhHHHHHH-HhhhcCCCCCeEEEecc
Q 014700          205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~-~i~~~l~~~~iVVs~sn  234 (420)
                      .|+....   ++. .....++++.+++++..
T Consensus       263 ~atG~~~---~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         263 TTTGNKD---IITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             ECCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence            9987543   233 33566788888887753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.52  E-value=0.0004  Score=70.29  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+++|||+|..+..-...+..--.-.+|++|+|++++.+++.+.-..        ....+.+.+++++++++||+|+.
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvt  199 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITT  199 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEE
Confidence            4578999999999988877665432126999999999988777654211        01135667899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |+++.....+++  .+.+++++.|..+
T Consensus       200 aT~S~~~~Pvl~--~~~lkpG~hV~aI  224 (346)
T PRK07589        200 VTADKTNATILT--DDMVEPGMHINAV  224 (346)
T ss_pred             ecCCCCCCceec--HHHcCCCcEEEec
Confidence            998654222232  2456788876654

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.52  E-value=0.0018  Score=65.47  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=64.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH-HhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~-eal~~aDiVI  204 (420)
                      |+||+|||+ |.+|..++..|.+.. ++++..+.++.+..+.+.+.+..   +.+.   .... ..+.+ ....++|+||
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~---~~~~---~~~~-~~~~~~~~~~~vD~Vf   73 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPH---LRGL---VDLV-LEPLDPEILAGADVVF   73 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCcc---cccc---cCce-eecCCHHHhcCCCEEE
Confidence            589999997 999999999998763 36776655433322233332110   0000   0011 11221 1356899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|+|.....++...+..   .+..||+++..+-.
T Consensus        74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~  104 (343)
T PRK00436         74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL  104 (343)
T ss_pred             ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence            99999888887777654   57889999876543

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.00019  Score=70.38  Aligned_cols=72  Identities=21%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||. |.||.+||..|.++|  +.|++|...                            +.++++.++.||+||
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~----------------------------t~~l~~~~~~ADIVI  206 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSR----------------------------TRNLAEVARKADILV  206 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCC----------------------------CCCHHHHHhhCCEEE
Confidence            3689999998 999999999999998  999998211                            115777889999999


Q ss_pred             EccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~-l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|++... ++.      .+++++++||.+.
T Consensus       207 ~avg~~~~v~~------~~ik~GavVIDvg  230 (284)
T PRK14179        207 VAIGRGHFVTK------EFVKEGAVVIDVG  230 (284)
T ss_pred             EecCccccCCH------HHccCCcEEEEec
Confidence            9999654 333      2378899998874

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.49  E-value=0.00058  Score=68.31  Aligned_cols=97  Identities=14%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ++..+++|||+|..+..-+..+...-.-.+|.+|+|++++.+.+.+.-..        ....+.+.++.++++++||+|+
T Consensus       126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIV~  197 (315)
T PRK06823        126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA--------LGFAVNTTLDAAEVAHAANLIV  197 (315)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------cCCcEEEECCHHHHhcCCCEEE
Confidence            34679999999999999988887642126899999999988877653110        0114566788999999999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+++..  .+++  ...+++++.|+.+.
T Consensus       198 taT~s~~--P~~~--~~~l~~G~hi~~iG  222 (315)
T PRK06823        198 TTTPSRE--PLLQ--AEDIQPGTHITAVG  222 (315)
T ss_pred             EecCCCC--ceeC--HHHcCCCcEEEecC
Confidence            9999654  2221  24567888877653

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.49  E-value=0.0006  Score=70.14  Aligned_cols=95  Identities=21%  Similarity=0.313  Sum_probs=67.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+|+.|||+|-||...|.+|..+|. .+|++.+|+.++++++.+.-. .          .+...+++.+.+.++|+||.|
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss  245 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS  245 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence            4689999999999999999999985 799999999999998887521 1          122234666778999999999


Q ss_pred             cChhh---HHHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQF---SSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +.+..   ..+.++..... ++..++|++..
T Consensus       246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav  275 (414)
T COG0373         246 TSAPHPIITREMVERALKI-RKRLLIVDIAV  275 (414)
T ss_pred             cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence            87532   22333333221 12246777754

>PRK06046 alanine dehydrogenase; Validated

Probab=97.48  E-value=0.00048  Score=69.18  Aligned_cols=96  Identities=13%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-..       .++..+...++.+++++ +|+|++
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~  199 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVT  199 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEE
Confidence            3579999999999999999987542125888999999888777653110       01123456678888886 999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|+..  .+++  ...+++++.|.++.
T Consensus       200 aTps~~--P~~~--~~~l~~g~hV~~iG  223 (326)
T PRK06046        200 TTPSRK--PVVK--AEWIKEGTHINAIG  223 (326)
T ss_pred             ecCCCC--cEec--HHHcCCCCEEEecC
Confidence            999753  2221  23467888876653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.46  E-value=0.00039  Score=65.06  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..||+|+|+|.||+.+|..|++.|. .+++++|++
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            5799999999999999999999993 379999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.43  E-value=0.0018  Score=62.89  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiV  203 (420)
                      .+||+|||+|+||..++..|.+.+. ++++. +++|+++..+.+...               +.+.+|+++. ...+|+|
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV   66 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV   66 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence            4799999999999999999976421 14444 567777666555432               2345688885 5789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +-|-....+++....+..   .+.-++.++-|-
T Consensus        67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGA   96 (267)
T PRK13301         67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGA   96 (267)
T ss_pred             EECCCHHHHHHHHHHHHh---cCCCEEEEChhH
Confidence            999999999988877755   344444444443

>PRK04148 hypothetical protein; Provisional

Probab=97.42  E-value=0.00084  Score=58.72  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=70.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||.+||+| .|..+|..|++.|  ++|+..|.+++.++.+++.+.+.. ..+.       +..++ +.-+++|+|.-.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v-~dDl-------f~p~~-~~y~~a~liysi   84 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAF-VDDL-------FNPNL-EIYKNAKLIYSI   84 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEE-ECcC-------CCCCH-HHHhcCCEEEEe
Confidence            4799999999 9999999999988  999999999998888877653211 0010       01133 346789999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      =|...+..-+-+++..+.-+.+|..++
T Consensus        85 rpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         85 RPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            998887777778887776665565554

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.41  E-value=0.00041  Score=70.90  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=64.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ..+|.|||+|.+|...+..|...|  .+|++++|++++.+.+........+     .  ...-..++.+.+.++|+||.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~-----~--~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIH-----T--RYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeE-----e--ccCCHHHHHHHHccCCEEEEc
Confidence            457999999999999999999988  7899999999887776553211000     0  000012455677899999999


Q ss_pred             cCh--hhHHH-HHHHhhhcCCCCCeEEEec
Q 014700          207 MPV--QFSSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~--~~l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      ++.  ..... +.++....++++.+||++.
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            742  11111 1133344467788888765

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0009  Score=67.17  Aligned_cols=97  Identities=19%  Similarity=0.336  Sum_probs=71.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +...++|||+|..+..-...+..--.-.+|.+|+|+++..+++.+.-..       .++..+.+.++.++++++||+|+.
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt  201 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVT  201 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEE
Confidence            4578999999999999999887642125899999999988777643110       011245777899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|+..  .+++  ..++++++.|..+.
T Consensus       202 ~T~s~~--Pil~--~~~l~~G~hI~aiG  225 (330)
T COG2423         202 ATPSTE--PVLK--AEWLKPGTHINAIG  225 (330)
T ss_pred             ecCCCC--Ceec--HhhcCCCcEEEecC
Confidence            999876  2222  35677888876654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.40  E-value=0.002  Score=65.29  Aligned_cols=99  Identities=18%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVI  204 (420)
                      |||+|||+ |.+|..+.+.|.+.- .+++. ++++++...+.+.+....   +.+.   ...... .+.++...++|+||
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence            69999998 999999999999762 36777 446544222223322110   0110   011111 14555556899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+|.....++...+..   .+..||+++..+
T Consensus        74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~f  102 (346)
T TIGR01850        74 LALPHGVSAELAPELLA---AGVKVIDLSADF  102 (346)
T ss_pred             ECCCchHHHHHHHHHHh---CCCEEEeCChhh
Confidence            99999888887777654   578899988644

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.39  E-value=0.00047  Score=62.72  Aligned_cols=73  Identities=26%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGam-G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||.|||+|.| |..+|..|.+.|  .+|++.+|+.+                            ++.+.+.++|+||.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVIs   93 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVIV   93 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEEE
Confidence            579999999997 888999999988  78999998632                            34556889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |++...+  +-.   ..++++.++|++..
T Consensus        94 at~~~~i--i~~---~~~~~~~viIDla~  117 (168)
T cd01080          94 AVGKPGL--VKG---DMVKPGAVVIDVGI  117 (168)
T ss_pred             cCCCCce--ecH---HHccCCeEEEEccC
Confidence            9997542  111   23556788888753

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05086 malate dehydrogenase; Provisional

Probab=97.39  E-value=0.00083  Score=67.10  Aligned_cols=102  Identities=20%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--eCCHHHhccCCcEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td~~eal~~aDiV  203 (420)
                      |||+|||+ |.+|.+++..|.. .+..+++.++++++.. +     +... .+........+..  .+++.++++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~-----g~al-Dl~~~~~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-P-----GVAV-DLSHIPTAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-c-----ceeh-hhhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence            79999999 9999999998855 3334789999987531 1     1000 0111000012232  34656678999999


Q ss_pred             EEccCh--h--------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPV--Q--------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~--~--------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|.-.  .              .++++++.+.++ .++.+|+..+|..+
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D  122 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN  122 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence            998642  1              244455555555 46778888888554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.39  E-value=0.00063  Score=67.06  Aligned_cols=76  Identities=30%  Similarity=0.432  Sum_probs=55.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.+|.+++..|+..|. .+|++++|+.++++.+.+.-.. . .+.    ..+....+..+.+.++|+||-|
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~-~~~----~~~~~~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-R-FPA----ARATAGSDLAAALAAADGLVHA  199 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-h-CCC----eEEEeccchHhhhCCCCEEEEC
Confidence            4799999999999999999999883 4899999999988887653100 0 000    0122233445567889999999


Q ss_pred             cCh
Q 014700          207 MPV  209 (420)
Q Consensus       207 Vp~  209 (420)
                      +|.
T Consensus       200 Tp~  202 (284)
T PRK12549        200 TPT  202 (284)
T ss_pred             CcC
Confidence            985

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.39  E-value=0.00052  Score=71.15  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+.....          .+...+++.+.+.++|+||.|
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~~----------~~~~~~~l~~~l~~aDiVI~a  249 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRNA----------SAHYLSELPQLIKKADIIIAA  249 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcCC----------eEecHHHHHHHhccCCEEEEC
Confidence            4799999999999999999999873 58999999999888887642100          122234566778899999999


Q ss_pred             cChhh
Q 014700          207 MPVQF  211 (420)
Q Consensus       207 Vp~~~  211 (420)
                      +++..
T Consensus       250 T~a~~  254 (414)
T PRK13940        250 VNVLE  254 (414)
T ss_pred             cCCCC
Confidence            98643

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.38  E-value=0.0018  Score=73.75  Aligned_cols=85  Identities=16%  Similarity=0.215  Sum_probs=60.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-e
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-T  190 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~-------------V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~  190 (420)
                      ..++||+|||+|.||...+..|++.. +.+             |++.|++.+.++++.+...+..         .+.. .
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lDv  636 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLDV  636 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEeec
Confidence            45789999999999999999999864 233             8899999988887766421110         1233 3


Q ss_pred             CCHHHh---ccCCcEEEEccChhhHHHHHHHh
Q 014700          191 TDAKTA---LLGADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       191 td~~ea---l~~aDiVIlaVp~~~l~~vl~~i  219 (420)
                      +|.++.   ++++|+||.|+|......+++..
T Consensus       637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA  668 (1042)
T PLN02819        637 SDSESLLKYVSQVDVVISLLPASCHAVVAKAC  668 (1042)
T ss_pred             CCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence            455544   36799999999987666655443

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.37  E-value=0.0009  Score=67.22  Aligned_cols=95  Identities=20%  Similarity=0.349  Sum_probs=67.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ...+++|||+|.+|.+.+..|.. .+. .+|++|+|++++.+.+.+.-.. .      +...+...+++++++.++|+|+
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVv  199 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIV  199 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEE
Confidence            35689999999999999999974 332 5799999999988877653110 0      0113455678889899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+|+..  .++.  ...+++++.|..+
T Consensus       200 taT~s~~--p~i~--~~~l~~g~~i~~v  223 (326)
T TIGR02992       200 TTTPSET--PILH--AEWLEPGQHVTAM  223 (326)
T ss_pred             EecCCCC--cEec--HHHcCCCcEEEee
Confidence            9999743  1221  2345677776644

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd00704 MDH Malate dehydrogenase

Probab=97.35  E-value=0.00092  Score=67.12  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTAL  197 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~~r~~--~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal  197 (420)
                      .||+|||+ |.+|+.+|..|+..+.-.     ++.++|+++  +.++     +.. ..+.+.  .+.....+.++..+++
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~-----g~~-~Dl~d~~~~~~~~~~i~~~~~~~~   74 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE-----GVV-MELQDCAFPLLKGVVITTDPEEAF   74 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc-----eee-eehhhhcccccCCcEEecChHHHh
Confidence            38999999 999999999999766312     599999976  3221     110 011111  0111233444556779


Q ss_pred             cCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          198 LGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       198 ~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      ++||+||++--.     .           .++++..+|.++.+++.++|.++|-++     .+...+.+..|
T Consensus        75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD-----~~t~~~~k~sg  141 (323)
T cd00704          75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN-----TNALIALKNAP  141 (323)
T ss_pred             CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH-----HHHHHHHHHcC
Confidence            999999986421     1           255566667666546777777777543     33344455544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.34  E-value=0.0007  Score=68.02  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=66.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~-----~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal~  198 (420)
                      ..||+|+|+ |.+|+.++..|...+.     +.+|.++|+++.. +.+.  +... .+.+.  .+...+....++.++++
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~--g~~~-Dl~d~~~~~~~~~~~~~~~~~~l~   77 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALE--GVVM-ELQDCAFPLLKSVVATTDPEEAFK   77 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-cccc--ceee-ehhhccccccCCceecCCHHHHhC
Confidence            358999999 9999999999988552     1489999996531 1111  1110 11110  11123444567667789


Q ss_pred             CCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          199 GADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       199 ~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +||+||++--.     .           .++++.+.+..+.+++.++|.++|-+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  131 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA  131 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence            99999986421     1           13555566777765677787788744

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.33  E-value=0.0022  Score=63.54  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc----
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL----  197 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal----  197 (420)
                      +..+||+|||+|.+|+.+...+.+.. +.++. +++++++..  +..++.|..             ...++.++.+    
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~~   67 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMPE   67 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCcC
Confidence            34579999999999999888887653 25666 567877532  222322211             1123566655    


Q ss_pred             -cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          198 -LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       198 -~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                       ++.|+||++++.....+......+   .++.+|+.+
T Consensus        68 ~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s  101 (302)
T PRK08300         68 FDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT  101 (302)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence             468999999999887777666544   467777654

>PLN00106 malate dehydrogenase

Probab=97.32  E-value=0.0011  Score=66.60  Aligned_cols=100  Identities=19%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEE---eCCHHHhccCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a---~td~~eal~~a  200 (420)
                      ..||+|||+ |.+|+.+|..|+..+...++.++|+++...  ..+...  .        ....+..   .+|+.++++++
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~--~--------~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHI--N--------TPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhC--C--------cCceEEEEeCCCCHHHHcCCC
Confidence            469999999 999999999999776445899999876111  111110  0        0112332   33456779999


Q ss_pred             cEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+||++--.     .           .++++++.+.++- ++.+|+..+|-.+
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD  139 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN  139 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence            999986421     1           2344555555553 6778888888665

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.32  E-value=0.0027  Score=65.16  Aligned_cols=124  Identities=12%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             eccccccccccc-hhh---cCCCeEEEEcc-cHHHHHHHHHHHhcCCCC-----eEEEE--eCCHHHHHHHHHhcCCCCC
Q 014700          110 RWSRTWRSKAKT-DIL---ERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYML--MRDPAVCQSINEKHCNCRY  177 (420)
Q Consensus       110 ~~~~~~~~~~~~-~~~---~~~mkI~IIGa-GamG~alA~~La~aG~~~-----~V~l~--~r~~~~~~~i~~~g~~~~~  177 (420)
                      .+-.|+..++.. +..   ....||+|||+ |.+|+++|..|+..+.-.     .+.++  |++++.++-..-.-.+.- 
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a-  101 (387)
T TIGR01757        23 VFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSL-  101 (387)
T ss_pred             EEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhh-
Confidence            355555555522 222   22469999999 999999999999877411     34445  777665432221100000 


Q ss_pred             CCCCCCCCceEEeCCHHHhccCCcEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          178 FPEQKLPENVIATTDAKTALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       178 l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                         ..+..++.++++..+.+++||+||++--.     .           .++++.+.|.++.+++.+||.++|.++
T Consensus       102 ---~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD  174 (387)
T TIGR01757       102 ---YPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN  174 (387)
T ss_pred             ---hhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence               01112355444445668999999996421     1           245566667776667888888887543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.30  E-value=0.003  Score=63.85  Aligned_cols=100  Identities=21%  Similarity=0.208  Sum_probs=63.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHh-cCCCCC--CCCCC--C-CCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRY--FPEQK--L-PENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~-g~~~~~--l~~~~--l-~~~i~a~td~~eal~~  199 (420)
                      |+||+|+|+|.||..++..+.+.. +.+|.. .+++++....+.+. |.. .|  ++...  + ...+.+..++++.+.+
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~   78 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK   78 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence            479999999999999999988753 367764 45566555544432 221 11  11100  1 1245666677777788


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      +|+||.|+|.....+..+....   .++.+|.
T Consensus        79 vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~  107 (341)
T PRK04207         79 ADIVVDATPGGVGAKNKELYEK---AGVKAIF  107 (341)
T ss_pred             CCEEEECCCchhhHHHHHHHHH---CCCEEEE
Confidence            9999999998877666654433   3444443

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.29  E-value=0.0012  Score=64.45  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|+|+|.+|.+++..|++.|  ++|++++|++++.+.+.+.-..   .+      .+...+..+....++|+||.|
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~~~~~~~~~~~DivIna  185 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAFSMDELPLHRVDLIINA  185 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEechhhhcccCccEEEEC
Confidence            578999999999999999999988  8999999998887776653110   00      112221112224579999999


Q ss_pred             cChhh---HHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQF---SSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~---l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|...   ..+.. -....++++.+++.+.
T Consensus       186 tp~gm~~~~~~~~-~~~~~l~~~~~v~D~~  214 (270)
T TIGR00507       186 TSAGMSGNIDEPP-VPAEKLKEGMVVYDMV  214 (270)
T ss_pred             CCCCCCCCCCCCC-CCHHHcCCCCEEEEec
Confidence            99642   21110 0123356777888875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.29  E-value=0.00097  Score=61.61  Aligned_cols=96  Identities=27%  Similarity=0.333  Sum_probs=62.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--eCC---HHHhccCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTD---AKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td---~~eal~~a  200 (420)
                      .+++.|+|+ |.+|..++..|++.|  ++|++++|+.++.+.+.+.- ...+  +.    .+..  ..+   ..+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l-~~~~--~~----~~~~~~~~~~~~~~~~~~~~   98 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSL-RARF--GE----GVGAVETSDDAARAAAIKGA   98 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHH-Hhhc--CC----cEEEeeCCCHHHHHHHHhcC
Confidence            479999996 999999999999988  89999999988877665431 0000  00    1111  122   23567899


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+||.++|....  .........+++.+++++.
T Consensus        99 diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~  129 (194)
T cd01078          99 DVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN  129 (194)
T ss_pred             CEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence            999999996543  1111122233456777764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11579 putative oxidoreductase; Provisional

Probab=97.29  E-value=0.0021  Score=64.82  Aligned_cols=93  Identities=14%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||.. .+..+.+.. +.++. ++++++++..   +..      +      ...+++|+++.+.  +.|
T Consensus         3 ~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~vD   66 (346)
T PRK11579          3 DKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPNID   66 (346)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCCCC
Confidence            3579999999999974 556665542 26766 6788876432   211      0      1245678998875  579


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+..
T Consensus        67 ~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~   99 (346)
T PRK11579         67 LIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV   99 (346)
T ss_pred             EEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence            99999998877666655443   455554 4565543

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.27  E-value=0.0015  Score=65.02  Aligned_cols=96  Identities=11%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+++|||+|..|..-+..+..--.-.+|.+|+|++++.+++.+.-..       .+...+.+.+++++++.+||+|+.
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~t  188 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITS  188 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEE
Confidence            4579999999999999988887642125899999999988877653210       011235677899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |+++..  .+++  ..++++++.|..+
T Consensus       189 aT~s~~--P~~~--~~~l~pg~hV~ai  211 (301)
T PRK06407        189 ITNSDT--PIFN--RKYLGDEYHVNLA  211 (301)
T ss_pred             ecCCCC--cEec--HHHcCCCceEEec
Confidence            999753  2221  2356677766554

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.27  E-value=0.0013  Score=65.53  Aligned_cols=97  Identities=22%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             CCCeEEEEcccHHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700          126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG-~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD  201 (420)
                      .++||||||+|.++ ...+..+.+.+.. .-|-++++++++++.+.+....         +   ...+|.++++.+  .|
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD   69 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID   69 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence            36899999998555 5688888776511 2456789999998888775311         1   456788888775  69


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|++|+|.....+++...   +..++.|+ +-|.+..
T Consensus        70 ~V~Iatp~~~H~e~~~~A---L~aGkhVl-~EKPla~  102 (342)
T COG0673          70 AVYIATPNALHAELALAA---LEAGKHVL-CEKPLAL  102 (342)
T ss_pred             EEEEcCCChhhHHHHHHH---HhcCCEEE-EcCCCCC
Confidence            999999988877666433   33455554 5676654

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.27  E-value=0.00071  Score=67.68  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ++||+|||+|+||...+..+.++. +.++. +++|++..  .+.+ ..            ++..+.+.++.+.++|+|++
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~--~~~~-~~------------~v~~~~d~~e~l~~iDVViI   66 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAE--TLDT-ET------------PVYAVADDEKHLDDVDVLIL   66 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHH--HHhh-cC------------CccccCCHHHhccCCCEEEE
Confidence            479999999999999999998763 36776 56887521  2221 11            12233466666788999999


Q ss_pred             ccChhh
Q 014700          206 AMPVQF  211 (420)
Q Consensus       206 aVp~~~  211 (420)
                      |+|+..
T Consensus        67 ctPs~t   72 (324)
T TIGR01921        67 CMGSAT   72 (324)
T ss_pred             cCCCcc
Confidence            999644

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.021  Score=56.59  Aligned_cols=232  Identities=15%  Similarity=0.170  Sum_probs=135.4

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC--CCCCCCCC-----CCCCceE---EeCCH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA  193 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~--~~~~l~~~-----~l~~~i~---a~td~  193 (420)
                      |++|.++.++|+|.+.--+|.-|...| +..+-+++|..-+-+++.+.-.  ...++.+.     .+...+.   ...++
T Consensus         1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~   79 (431)
T COG4408           1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL   79 (431)
T ss_pred             CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence            456789999999999999999999987 4788888876544444433211  01122111     1122221   23578


Q ss_pred             HHhccCCcEEEEccChhhHHHHHHHhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE---------
Q 014700          194 KTALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS---------  263 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~l~~vl~~i~-~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~---------  263 (420)
                      +++..+-+-+|+|||.++..+++++|- ..++.-+.+|.++..++...  .+...+ ...|.   ++.+++         
T Consensus        80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~m-nk~~~---daeViS~SsY~~dTk  153 (431)
T COG4408          80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLM-NKAGR---DAEVISLSSYYADTK  153 (431)
T ss_pred             HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHH-hhhCC---CceEEEeehhcccce
Confidence            888889999999999999999999983 44554445555555455431  222222 22232   122221         


Q ss_pred             -----CcccHHHHhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHH--------HHHHHHHHH
Q 014700          264 -----GPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK--------NVLAIAAGI  328 (420)
Q Consensus       264 -----GP~~a~ev~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alk--------Nv~Ai~~G~  328 (420)
                           -|+++-..+-.  ..+.+++  .+...++++..+|...|+.+.+.+....+|-...-.        |=+++.+-.
T Consensus       154 ~id~~~p~~alTkavK--kriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif  231 (431)
T COG4408         154 YIDAEQPNRALTKAVK--KRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIF  231 (431)
T ss_pred             eecccCcchHHHHHHh--HheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHh
Confidence                 14443322211  2245554  356778999999999999999988877766543222        112222211


Q ss_pred             H-Hhc-----c---cch--hHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700          329 V-VGM-----N---LGN--NSMAALVAQGCSEIRWLATKMGAKPATI  364 (420)
Q Consensus       329 ~-~gl-----~---lg~--N~~~al~~~~~~E~~~lA~a~Gi~~~t~  364 (420)
                      . ++.     |   -|.  .....-+...-.|+.++..++|+++-.+
T Consensus       232 ~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNL  278 (431)
T COG4408         232 YPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINL  278 (431)
T ss_pred             CCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhH
Confidence            1 111     1   121  1222334556689999999999875433

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.25  E-value=0.0012  Score=59.57  Aligned_cols=81  Identities=23%  Similarity=0.398  Sum_probs=55.0

Q ss_pred             EEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       130 I~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      |.|+|+ |.+|..++..|.+.|  ++|+++.|++++.+.  ..+.  ....+.     +.-.++..++++++|.||.+++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~--~~~~~d-----~~d~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGV--EIIQGD-----LFDPDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTE--EEEESC-----TTCHHHHHHHHTTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--cccc--ccceee-----ehhhhhhhhhhhhcchhhhhhh
Confidence            789997 999999999999998  999999999987665  2221  111000     0000234567889999999998


Q ss_pred             h-----hhHHHHHHHhhh
Q 014700          209 V-----QFSSSFLEGISD  221 (420)
Q Consensus       209 ~-----~~l~~vl~~i~~  221 (420)
                      .     ...+.+++.+..
T Consensus        70 ~~~~~~~~~~~~~~a~~~   87 (183)
T PF13460_consen   70 PPPKDVDAAKNIIEAAKK   87 (183)
T ss_dssp             STTTHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccc
Confidence            3     334555554433

...

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0041  Score=62.29  Aligned_cols=101  Identities=21%  Similarity=0.332  Sum_probs=64.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVI  204 (420)
                      |+||+|+|+ |.-|.-+.+.|+..- +.++.++..++..-+.+.+.+.+...+.+  ++  +... |+++. ..+||+||
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~~-~~~~~~~~~~DvvF   75 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQTI-DPEKIELDECDVVF   75 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--cccC-ChhhhhcccCCEEE
Confidence            789999996 999999999999874 46766665544333444444433321111  11  1111 33332 45699999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+|...-.+++.++..   .+..||+++.-.
T Consensus        76 lalPhg~s~~~v~~l~~---~g~~VIDLSadf  104 (349)
T COG0002          76 LALPHGVSAELVPELLE---AGCKVIDLSADF  104 (349)
T ss_pred             EecCchhHHHHHHHHHh---CCCeEEECCccc
Confidence            99998887776666543   456688887533

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.23  E-value=0.0022  Score=66.94  Aligned_cols=117  Identities=18%  Similarity=0.273  Sum_probs=71.6

Q ss_pred             CeEEEEcccHH-HHHHHHHHHhc--CC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGam-G~alA~~La~a--G~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.. +--+...|...  .. ..+|.++|.++++.+.+.+.-.  ++......+-.+..++|.++|+++||+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADfV   78 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADFV   78 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence            79999999985 11122333332  11 2689999999987655432110  0111111233678899999999999999


Q ss_pred             EEccChh------------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          204 LHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       204 IlaVp~~------------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      |.++-..                                    .+.++++.+..+. ++..+|+.+|.++     .+++.
T Consensus        79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~-----~vt~~  152 (437)
T cd05298          79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAA-----IVAEA  152 (437)
T ss_pred             EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHH-----HHHHH
Confidence            9875321                                    2344555555543 6888888888654     34455


Q ss_pred             HHHHh
Q 014700          248 IPQAL  252 (420)
Q Consensus       248 l~~~l  252 (420)
                      +.+.+
T Consensus       153 ~~~~~  157 (437)
T cd05298         153 LRRLF  157 (437)
T ss_pred             HHHHC
Confidence            55544

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.21  E-value=0.0034  Score=56.41  Aligned_cols=79  Identities=14%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.+|...+..|.+.|  ++|++++.+  ..+++.+.+       ...+..  ... ..++ +.++|+||.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-------~i~~~~--~~~-~~~d-l~~a~lViaa   77 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-------YITWKQ--KTF-SNDD-IKDAHLIYAA   77 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-------CcEEEe--ccc-Chhc-CCCceEEEEC
Confidence            579999999999999999999998  899999643  334444321       000000  001 1222 6789999999


Q ss_pred             cChhhHHHHHHHhh
Q 014700          207 MPVQFSSSFLEGIS  220 (420)
Q Consensus       207 Vp~~~l~~vl~~i~  220 (420)
                      +....+...+.+..
T Consensus        78 T~d~e~N~~i~~~a   91 (157)
T PRK06719         78 TNQHAVNMMVKQAA   91 (157)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99887666665544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.16  E-value=0.0025  Score=53.44  Aligned_cols=93  Identities=19%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEccC
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHAMP  208 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIlaVp  208 (420)
                      |.|+|.|.+|..++..|.+.+  .+|++++++++.++.+.+.+....+ ++..-+      ..++++ +.++|.++++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~------~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDATDP------EVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-TTSH------HHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccchhh------hHHhhcCccccCEEEEccC
Confidence            679999999999999999965  6999999999999999887632111 110000      012222 568999999999


Q ss_pred             hhhHH-HHHHHhhhcCCCCCeEEEe
Q 014700          209 VQFSS-SFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       209 ~~~l~-~vl~~i~~~l~~~~iVVs~  232 (420)
                      .+..- .++..+.... +...++..
T Consensus        72 ~d~~n~~~~~~~r~~~-~~~~ii~~   95 (116)
T PF02254_consen   72 DDEENLLIALLARELN-PDIRIIAR   95 (116)
T ss_dssp             SHHHHHHHHHHHHHHT-TTSEEEEE
T ss_pred             CHHHHHHHHHHHHHHC-CCCeEEEE
Confidence            76533 3333444433 33444433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.15  E-value=0.0023  Score=64.64  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...||.|||+|.+|+.+|..|+++|. .+++++|++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            35799999999999999999999993 3899999874

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.13  E-value=0.0011  Score=67.69  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=52.1

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEE-eCC---HHHhccCCcE
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTD---AKTALLGADY  202 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a-~td---~~eal~~aDi  202 (420)
                      |.|||+|.+|..++..|++.+ ++ +|++.+|+.++++++.+.  +.....         +.+ ..|   +++.++++|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~l~~~~~~~dv   70 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA---------VQVDVNDPESLAELLRGCDV   70 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE---------EE--TTTHHHHHHHHTTSSE
T ss_pred             CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE---------EEEecCCHHHHHHHHhcCCE
Confidence            789999999999999999986 34 899999999998887753  111110         011 122   4567889999


Q ss_pred             EEEccChhhHHHHH
Q 014700          203 CLHAMPVQFSSSFL  216 (420)
Q Consensus       203 VIlaVp~~~l~~vl  216 (420)
                      ||-|++......++
T Consensus        71 Vin~~gp~~~~~v~   84 (386)
T PF03435_consen   71 VINCAGPFFGEPVA   84 (386)
T ss_dssp             EEE-SSGGGHHHHH
T ss_pred             EEECCccchhHHHH
Confidence            99999876444444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.12  E-value=0.0021  Score=63.86  Aligned_cols=100  Identities=11%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh--
Q 014700          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV--  209 (420)
Q Consensus       132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~--  209 (420)
                      |||+|.+|+++|..|+..+...++.++|++++.++-....-.+...    .+..++.+..+..+.+++||+||++.-.  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence            6999999999999999887545799999977543322211000000    0112233333333568999999997532  


Q ss_pred             --------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          210 --------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       210 --------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                                    ..++++.+.+.++ .++.+++.++|-.
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~  116 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPV  116 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence                          1245556666665 4677788888743

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.11  E-value=0.0018  Score=60.53  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ...||.|||+|.+|+.+|..|++.|. .+++++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence            35799999999999999999999984 489999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.10  E-value=0.001  Score=70.34  Aligned_cols=71  Identities=15%  Similarity=0.310  Sum_probs=53.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++++|+|+|.+|.+++..|++.|  ++|++++|+.++++.+.+.. +..          .....+..+ +.++|+||.|
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIna  397 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIINC  397 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEEc
Confidence            579999999999999999999998  89999999998887776531 100          000112222 5689999999


Q ss_pred             cChhh
Q 014700          207 MPVQF  211 (420)
Q Consensus       207 Vp~~~  211 (420)
                      +|...
T Consensus       398 tP~g~  402 (477)
T PRK09310        398 LPPSV  402 (477)
T ss_pred             CCCCC
Confidence            99653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.10  E-value=0.00087  Score=61.37  Aligned_cols=70  Identities=16%  Similarity=0.294  Sum_probs=49.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|||+ |..|+.+..-..+.|  |+|+.+.|++.++...  .+....       ..-+.--+.+++.+.+.|+||.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence            79999996 999999999999998  9999999999875443  121110       00111112334568899999998


Q ss_pred             cC
Q 014700          207 MP  208 (420)
Q Consensus       207 Vp  208 (420)
                      .-
T Consensus        70 ~~   71 (211)
T COG2910          70 FG   71 (211)
T ss_pred             cc
Confidence            75

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.10  E-value=0.0034  Score=63.03  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhcCCC-----CeEEEEeCCHHHHHHHHHhcCCCCCCCCC--CCCCceEEeCCHHHhccCC
Q 014700          129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAVCQSINEKHCNCRYFPEQ--KLPENVIATTDAKTALLGA  200 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~aG~~-----~~V~l~~r~~~~~~~i~~~g~~~~~l~~~--~l~~~i~a~td~~eal~~a  200 (420)
                      ||+|||+ |.+|+.+|..|...+.-     +++.++|+++..- ...  +.. ..+.+.  .+...+...++..+++++|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-~a~--g~~-~Dl~d~~~~~~~~~~~~~~~~~~~~~a   76 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-VLE--GVV-MELMDCAFPLLDGVVPTHDPAVAFTDV   76 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-ccc--eeE-eehhcccchhcCceeccCChHHHhCCC
Confidence            6999999 99999999999876531     1599999865320 000  100 001111  1112233333545668999


Q ss_pred             cEEEEccCh-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          201 DYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       201 DiVIlaVp~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      |+||++--.     .           .++++.++|.++..++.++|.++|.++     .+...+.+..|.
T Consensus        77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD-----v~t~v~~~~sg~  141 (324)
T TIGR01758        77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN-----TNALVLSNYAPS  141 (324)
T ss_pred             CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH-----HHHHHHHHHcCC
Confidence            999986421     1           145555666666556778887887543     344455555543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.08  E-value=0.0035  Score=65.20  Aligned_cols=97  Identities=14%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH-hccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e-al~~aDiVIl  205 (420)
                      +++|.|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+.+.....+.+.     ..-...+++ .+.++|.||+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~~~~~i~gd-----~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELPNTLVLHGD-----GTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCCCCeEEECC-----CCCHHHHHhcCCccCCEEEE
Confidence            689999999999999999999988  89999999999888887753221111000     000001222 2568999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      +++.+...-++..+...+....+++
T Consensus       304 ~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        304 LTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            9987543333333334344444443

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.05  E-value=0.0036  Score=65.18  Aligned_cols=117  Identities=15%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CeEEEEcccHH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGam-G~alA~~La~aG--~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.. .--+...|....  . ..+|.++|.++++.+.+.+...  ++......+-.+..++|.++|+++||+|
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV   78 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV   78 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            69999999983 222333343321  1 2689999999977654332110  0001111123578899999999999999


Q ss_pred             EEccChh------------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          204 LHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       204 IlaVp~~------------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      |..+-.-                                    .+.++++.+..+ .|+.++|..+|.++     .+.+.
T Consensus        79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~d-----i~t~a  152 (425)
T cd05197          79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAG-----EVTEA  152 (425)
T ss_pred             EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHH-----HHHHH
Confidence            9885321                                    233455555554 36888998998654     34455


Q ss_pred             HHHHh
Q 014700          248 IPQAL  252 (420)
Q Consensus       248 l~~~l  252 (420)
                      +.+..
T Consensus       153 ~~~~~  157 (425)
T cd05197         153 VRRYV  157 (425)
T ss_pred             HHHhC
Confidence            55544

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.05  E-value=0.0062  Score=60.02  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=58.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      +||+|||+|.||..++..+.+.. +.++. +++++++..  +..++.|..             ...++.++.+.  +.|+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa   67 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI   67 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence            68999999999998887777543 25666 567777542  222222210             22346666654  5799


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |++++|.....+......+   .++.+++.+
T Consensus        68 V~iaTp~~~H~e~a~~al~---aGk~VIdek   95 (285)
T TIGR03215        68 VFDATSAKAHARHARLLAE---LGKIVIDLT   95 (285)
T ss_pred             EEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence            9999999887776655543   466666543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.03  E-value=0.0022  Score=65.85  Aligned_cols=99  Identities=20%  Similarity=0.352  Sum_probs=63.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+|||+|+|+ |..|..+.+.|.+.. +++|+.+.++...-+.+...+...   .+.... .+.. .+.++ ++++|+||
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l---~~~~~~-~~~~-~~~~~-~~~~DvVf  109 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHL---ITQDLP-NLVA-VKDAD-FSDVDAVF  109 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCccc---cCcccc-ceec-CCHHH-hcCCCEEE
Confidence            3679999997 999999999999873 379999887654333333322111   111111 0111 12233 57899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+|.....+++..+    ..+..||+++.-
T Consensus       110 ~Alp~~~s~~i~~~~----~~g~~VIDlSs~  136 (381)
T PLN02968        110 CCLPHGTTQEIIKAL----PKDLKIVDLSAD  136 (381)
T ss_pred             EcCCHHHHHHHHHHH----hCCCEEEEcCch
Confidence            999998776666654    346788888753

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.01  E-value=0.0032  Score=61.78  Aligned_cols=97  Identities=11%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+.....   .      .+....+..+.+.++|+||-|
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna  192 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA  192 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence            4689999999999999999998873 58999999999888776642110   0      011111334557789999999


Q ss_pred             cChhhHHH--HHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSS--FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~--vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|......  ...-....++++.+++.+.
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            99643210  0000112345566777664

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.98  E-value=0.0025  Score=62.73  Aligned_cols=74  Identities=12%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe---CCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~---td~~eal~~aDiV  203 (420)
                      .+++.|||+|.+|.+++..|++.|. .+|++++|+.++.+.+.+.... .        ..+...   .+..+.+.++|+|
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence            5689999999999999999999883 4799999999998888764110 0        001111   1233446789999


Q ss_pred             EEccChh
Q 014700          204 LHAMPVQ  210 (420)
Q Consensus       204 IlaVp~~  210 (420)
                      |-|+|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999963

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.95  E-value=0.0063  Score=56.99  Aligned_cols=81  Identities=12%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.+|...+..|.++|  ++|++++++. +.+..+...+. ..+.         .-.-.. +.+.++|+||.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVia   76 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVIA   76 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEEE
Confidence            579999999999999999999998  8999998764 22334333221 0000         000012 23678999999


Q ss_pred             ccChhhHHHHHHHhh
Q 014700          206 AMPVQFSSSFLEGIS  220 (420)
Q Consensus       206 aVp~~~l~~vl~~i~  220 (420)
                      |+.+..+...+.+..
T Consensus        77 aT~d~elN~~i~~~a   91 (202)
T PRK06718         77 ATNDPRVNEQVKEDL   91 (202)
T ss_pred             cCCCHHHHHHHHHHH
Confidence            999888766665544

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.91  E-value=0.0027  Score=62.48  Aligned_cols=73  Identities=22%  Similarity=0.271  Sum_probs=57.3

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||.|. +|..+|..|.+.|  ..|+++.+...                            ++++.+++||+||
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t~----------------------------~l~~~~~~ADIVI  206 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRSK----------------------------DMASYLKDADVIV  206 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCch----------------------------hHHHHHhhCCEEE
Confidence            368999999988 9999999999987  89998876421                            4566788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|++...+   +.  ..+++++++||++.
T Consensus       207 sAvg~p~~---i~--~~~vk~gavVIDvG  230 (286)
T PRK14175        207 SAVGKPGL---VT--KDVVKEGAVIIDVG  230 (286)
T ss_pred             ECCCCCcc---cC--HHHcCCCcEEEEcC
Confidence            99986542   11  13567889998874

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.90  E-value=0.0037  Score=57.12  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            68999999999999999999994 4799999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.87  E-value=0.003  Score=63.72  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|||+|+|+ |..|..+.+.|.+.++. .++..+.+++..-+.+.        +.+    ..+...+...+.+.++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~--------~~g----~~i~v~d~~~~~~~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS--------FKG----KELKVEDLTTFDFSGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee--------eCC----ceeEEeeCCHHHHcCCCEEE
Confidence            479999996 99999999999997621 24566666543222221        111    01222211112357899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|+|.....++..++..   .+..||+++.
T Consensus        69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~   95 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS   95 (334)
T ss_pred             ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence            99999888777766543   5678888774

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.85  E-value=0.0044  Score=66.67  Aligned_cols=96  Identities=13%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIla  206 (420)
                      -+|.|+|+|.+|..+|+.|.+.|  ++|+++|.|+++++++++.+.... ..+..-+      +.++++ ++++|.++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i-~GD~~~~------~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAV-LGNAANE------EIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEE-EcCCCCH------HHHHhcCccccCEEEEE
Confidence            47999999999999999999998  999999999999998887543211 1111000      012222 5689999999


Q ss_pred             cChhhHH-HHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSS-SFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~-~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ++++... .++..+... .++..++.-.
T Consensus       489 ~~~~~~~~~iv~~~~~~-~~~~~iiar~  515 (558)
T PRK10669        489 IPNGYEAGEIVASAREK-RPDIEIIARA  515 (558)
T ss_pred             cCChHHHHHHHHHHHHH-CCCCeEEEEE
Confidence            9875432 344444443 3455555444

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.84  E-value=0.0042  Score=67.52  Aligned_cols=98  Identities=15%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      .++|.|+|.|.+|..+++.|.+.|  ++++++|.|+++++.+++.|... +.++..-+      +.++++ +++||.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~------~~L~~agi~~A~~vv~  470 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDATQL------ELLRAAGAEKAEAIVI  470 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeCCCH------HHHHhcCCccCCEEEE
Confidence            468999999999999999999988  89999999999999888765321 11111100      012222 568999999


Q ss_pred             ccChhhH-HHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQFS-SSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l-~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +++++.. ..++..++.+ .|+..|+.-.+
T Consensus       471 ~~~d~~~n~~i~~~~r~~-~p~~~IiaRa~  499 (601)
T PRK03659        471 TCNEPEDTMKIVELCQQH-FPHLHILARAR  499 (601)
T ss_pred             EeCCHHHHHHHHHHHHHH-CCCCeEEEEeC
Confidence            9997653 3444554544 34555554443

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.81  E-value=0.0054  Score=62.93  Aligned_cols=101  Identities=16%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++..+++|||+|..+..-...++.-.. -.+|.+|+|++++.+.+.+.-..  .+++.   ..+.+.+++++++.+||+|
T Consensus       153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~--~~~~~---~~v~~~~s~~eav~~ADIV  227 (379)
T PRK06199        153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE--TYPQI---TNVEVVDSIEEVVRGSDIV  227 (379)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH--hcCCC---ceEEEeCCHHHHHcCCCEE
Confidence            346799999999999999988876320 15999999999988776653210  01110   1256778999999999999


Q ss_pred             EEccChhh----HHHHHHHhhhcCCCCCeEEEe
Q 014700          204 LHAMPVQF----SSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       204 IlaVp~~~----l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +.|+++..    ...+++  ..++++++.|+.+
T Consensus       228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i  258 (379)
T PRK06199        228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLMP  258 (379)
T ss_pred             EEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence            99997522    112221  2456788877643

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.76  E-value=0.0069  Score=62.97  Aligned_cols=116  Identities=20%  Similarity=0.297  Sum_probs=70.2

Q ss_pred             CeEEEEcccHHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~-alA~~La~aG--~-~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      |||+|||+|..-+ .+...|+...  . .-+|.++|.+ +++++.+.+...  ++......+..+..++|.++++++||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            7999999999644 2333344321  1 2589999999 776544322110  000111112357889999999999999


Q ss_pred             EEEccCh-----h-------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700          203 CLHAMPV-----Q-------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (420)
Q Consensus       203 VIlaVp~-----~-------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se  246 (420)
                      ||.+.-.     .                               .+.++++.+.++- |+..+++.+|.++     .+++
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~-----ivt~  152 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAG-----IVTE  152 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHH-----HHHH
Confidence            9987531     1                               2334555555543 6888888888554     3445


Q ss_pred             HHHHH
Q 014700          247 IIPQA  251 (420)
Q Consensus       247 ~l~~~  251 (420)
                      .+.+.
T Consensus       153 a~~k~  157 (419)
T cd05296         153 AVLRH  157 (419)
T ss_pred             HHHHh
Confidence            55544

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.76  E-value=0.0069  Score=48.56  Aligned_cols=33  Identities=36%  Similarity=0.503  Sum_probs=29.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      .++++|+|+|.+|..++..|.+.+ ..+|.+|+|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            579999999999999999999984 278999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.73  E-value=0.024  Score=49.22  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+||+|+|+|.+|+.++..|++.|. .+++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            3699999999999999999999994 5899999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.72  E-value=0.02  Score=58.04  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..||+|||+ .||...+..+.+...+.++. +++++.++++++.+..             ++...+|.++.+.+.|++++
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~V   68 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIACV   68 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEEE
Confidence            469999999 68999999887753125655 6789999888887752             12245689998888888888


Q ss_pred             ccCh----hhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          206 AMPV----QFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       206 aVp~----~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      ++|+    ....++.....   +.|+-|+ +-|-+..
T Consensus        69 ~ipt~~P~~~H~e~a~~aL---~aGkHVL-~EKPla~  101 (343)
T TIGR01761        69 VVRSAIVGGQGSALARALL---ARGIHVL-QEHPLHP  101 (343)
T ss_pred             EeCCCCCCccHHHHHHHHH---hCCCeEE-EcCCCCH
Confidence            8764    34445544433   3455444 4565653

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.72  E-value=0.0015  Score=60.26  Aligned_cols=80  Identities=23%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             eEEEEcccHHHHHHHH--HHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          129 KVVVLGGGSFGTAMAA--HVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       129 kI~IIGaGamG~alA~--~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ||+|||+|..-.+.-.  .+.... . ..++.++|+++++++.+.+...  ++......+..+..++|.++++++||+||
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~--~~~~~~~~~~~v~~ttd~~eAl~gADfVi   78 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLAR--RMVEEAGADLKVEATTDRREALEGADFVI   78 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHH--HHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence            8999999987665332  233321 1 2489999999987764432110  00111122346788999999999999999


Q ss_pred             EccChh
Q 014700          205 HAMPVQ  210 (420)
Q Consensus       205 laVp~~  210 (420)
                      .++-.-
T Consensus        79 ~~irvG   84 (183)
T PF02056_consen   79 NQIRVG   84 (183)
T ss_dssp             E---TT
T ss_pred             EEeeec
Confidence            988753

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.67  E-value=0.0068  Score=61.22  Aligned_cols=96  Identities=19%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCC
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA  200 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~a  200 (420)
                      |.+|+||+|+|+ |.+|.-+.+.|.+.++. .++..+. +.+..      |.... +.+.    .+.+. .+..+ ++++
T Consensus         1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v   67 (336)
T PRK05671          1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESA------GHSVP-FAGK----NLRVREVDSFD-FSQV   67 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence            345689999997 99999999999976521 2333333 22211      21111 1111    12221 12233 5789


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |++|+|+|......++..+..   .+..||+++.-
T Consensus        68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~   99 (336)
T PRK05671         68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSGA   99 (336)
T ss_pred             CEEEEcCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence            999999997766666655533   46788887743

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.67  E-value=0.0037  Score=62.02  Aligned_cols=72  Identities=14%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||.|+|+ |.+|..++..|.++|  |+|++.+|+.+....+...+..  ...+     .+.-..++.++++++|+||.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~--~v~~-----Dl~d~~~l~~al~g~d~Vi~~   71 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAE--LVYG-----DLSLPETLPPSFKGVTAIIDA   71 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCE--EEEC-----CCCCHHHHHHHHCCCCEEEEC
Confidence            69999995 999999999999998  9999999987655444332211  1000     011112356678899999987


Q ss_pred             cC
Q 014700          207 MP  208 (420)
Q Consensus       207 Vp  208 (420)
                      +.
T Consensus        72 ~~   73 (317)
T CHL00194         72 ST   73 (317)
T ss_pred             CC
Confidence            65

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.66  E-value=0.0085  Score=66.03  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCeE--EEECcccHH-HHhh
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFI--ALSGPSFAL-ELMN  273 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------~~~~~--vl~GP~~a~-ev~~  273 (420)
                      ||+|+|...+.++++++.++++++++|.++.. +-    ..+.+.+.+.++..      .|+++  ..+|+..+. ++++
T Consensus         1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~   75 (673)
T PRK11861          1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV   75 (673)
T ss_pred             CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence            68999999999999999999999999877642 21    12223333333210      02221  234444443 4566


Q ss_pred             cCCeEEEEec-CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHH---HHHHHHHHH
Q 014700          274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAA  326 (420)
Q Consensus       274 g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~a---lkNv~Ai~~  326 (420)
                      +....++... .+.+.++.++++++..|.++...+.-.+++..++   +.|+++.+.
T Consensus        76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l  132 (673)
T PRK11861         76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFAL  132 (673)
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHH
Confidence            7665554433 3577889999999999999888766566665444   555655544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.66  E-value=0.05  Score=51.03  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.+|..-+..|.+.|  .+|++++.+.. .++.+.+.+ +.....+         .-+.. .+.++|+||.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~-dl~~~~lVi~   75 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDAD-ILEGAFLVIA   75 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHH-HhCCcEEEEE
Confidence            569999999999999999999998  89999987642 344554433 1111000         00222 3678999999


Q ss_pred             ccChhhH
Q 014700          206 AMPVQFS  212 (420)
Q Consensus       206 aVp~~~l  212 (420)
                      |+....+
T Consensus        76 at~d~~l   82 (205)
T TIGR01470        76 ATDDEEL   82 (205)
T ss_pred             CCCCHHH
Confidence            9887643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.64  E-value=0.01  Score=62.99  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCc-eEEeC-C--------HH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIATT-D--------AK  194 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~-i~a~t-d--------~~  194 (420)
                      .|+.|+|+|.+|...+..+...|  ..|+++++++++.+.+++.|.....++...   -..+ .+..+ +        ..
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~  242 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA  242 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence            59999999999999999998888  789999999988777766543211111000   0000 11111 1        23


Q ss_pred             HhccCCcEEEEcc-----ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          195 TALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       195 eal~~aDiVIlaV-----p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +.++++|+||.++     |...+  +.++....++++.+||+++
T Consensus       243 e~~~~~DIVI~TalipG~~aP~L--it~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       243 AQAKEVDIIITTALIPGKPAPKL--ITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHhCCCCEEEECcccCCCCCCee--ehHHHHhhCCCCCEEEEee
Confidence            4467899999988     43311  2344456677888887765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.63  E-value=0.0048  Score=58.25  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ...+|+|||+|.+|+.+|..|++.|. .+++++|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            45799999999999999999999995 479999987

>PRK08328 hypothetical protein; Provisional

Probab=96.59  E-value=0.0082  Score=57.38  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ..||.|||+|..|+.++..|++.|. .+++++|.+.-....++
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~   68 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLN   68 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhc
Confidence            5699999999999999999999995 58999987754444444

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=96.56  E-value=0.014  Score=56.56  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..||.|+|.|.+|.+.|..+..+|...++.++|.++++++  .+--+|.     .-+.-.+++....|.. +-.++++||
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~-----s~f~~~~~V~~~~Dy~-~sa~S~lvI   93 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHG-----SAFLSTPNVVASKDYS-VSANSKLVI   93 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccc-----cccccCCceEecCccc-ccCCCcEEE
Confidence            5699999999999999999988876668999998887532  1111111     0111124566666764 367899999


Q ss_pred             EccChh------------hHHHHHHHhhhc---CCCCCeEEEeccCCCc
Q 014700          205 HAMPVQ------------FSSSFLEGISDY---VDPGLPFISLSKGLEL  238 (420)
Q Consensus       205 laVp~~------------~l~~vl~~i~~~---l~~~~iVVs~snGi~~  238 (420)
                      +..-..            ..-++++.|.|.   ..|+++++.++|.++.
T Consensus        94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi  142 (332)
T KOG1495|consen   94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI  142 (332)
T ss_pred             EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence            976431            122344444332   2478888888886653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.55  E-value=0.013  Score=55.83  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=60.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHHhcCCCCCCCCCCCCCceEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~----~~~~-------~~i~~~g~~~~~l~~~~l~~~i~a~td~  193 (420)
                      .+||.|+|+|.+|.++|..|.+.|. .  +|+++||+    .++.       +.+.+.. +.         ...  ..++
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~---------~~~--~~~l   91 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP---------EKT--GGTL   91 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-cc---------Ccc--cCCH
Confidence            4699999999999999999999883 3  69999998    3332       2222210 00         011  1256


Q ss_pred             HHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      .++++++|++|-+++... .++.++.+    .++.+|..++|-.
T Consensus        92 ~~~l~~~dvlIgaT~~G~~~~~~l~~m----~~~~ivf~lsnP~  131 (226)
T cd05311          92 KEALKGADVFIGVSRPGVVKKEMIKKM----AKDPIVFALANPV  131 (226)
T ss_pred             HHHHhcCCEEEeCCCCCCCCHHHHHhh----CCCCEEEEeCCCC
Confidence            677889999999997322 23444443    3566777777643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.55  E-value=0.027  Score=54.52  Aligned_cols=147  Identities=19%  Similarity=0.197  Sum_probs=85.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|||+|.|+ |.||..+.+.+.+.. ++++. .++|.+...  .....   ..+-+. -+-++.+.+|+.....++|++|
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~--~g~d~---ge~~g~-~~~gv~v~~~~~~~~~~~DV~I   74 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS--LGSDA---GELAGL-GLLGVPVTDDLLLVKADADVLI   74 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc--cccch---hhhccc-cccCceeecchhhcccCCCEEE
Confidence            689999998 999999999999875 35554 456654321  00000   000000 0113445566667778999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      =.+-+....+.++-...   .+..+|.-++|+..+..+.+.+..++        +.++..|++.-.+..           
T Consensus        75 DFT~P~~~~~~l~~~~~---~~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvnl-----------  132 (266)
T COG0289          75 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVNL-----------  132 (266)
T ss_pred             ECCCchhhHHHHHHHHH---cCCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHHH-----------
Confidence            66655655555554443   23445556779987654433333322        346778887653211           


Q ss_pred             CHHHHHHHHHHHhcCCceEE
Q 014700          285 DRKLANAVQQLLASKHLRIS  304 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~  304 (420)
                      -...+++..++|.  ++.+.
T Consensus       133 l~~l~~~aak~l~--~~DiE  150 (266)
T COG0289         133 LFKLAEQAAKVLD--DYDIE  150 (266)
T ss_pred             HHHHHHHHHHhcC--CCCEE
Confidence            1245677777776  44444

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.54  E-value=0.0055  Score=60.28  Aligned_cols=73  Identities=26%  Similarity=0.332  Sum_probs=57.4

Q ss_pred             CCCeEEEEcccHH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGam-G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||.|.+ |..+|..|.+.|  ..|+++...                            +.|+.+.++.||+||
T Consensus       157 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~----------------------------t~~l~~~~~~ADIVV  206 (285)
T PRK14189        157 RGAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSK----------------------------TRDLAAHTRQADIVV  206 (285)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCC----------------------------CCCHHHHhhhCCEEE
Confidence            4689999999888 999999999987  899986431                            125677789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +.  ..+++++++||++.
T Consensus       207 ~avG~~~~---i~--~~~ik~gavVIDVG  230 (285)
T PRK14189        207 AAVGKRNV---LT--ADMVKPGATVIDVG  230 (285)
T ss_pred             EcCCCcCc---cC--HHHcCCCCEEEEcc
Confidence            99995542   22  26788999998873

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.52  E-value=0.011  Score=56.35  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            5699999999999999999999995 5888887663

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.52  E-value=0.0093  Score=65.10  Aligned_cols=94  Identities=18%  Similarity=0.320  Sum_probs=65.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH---HH-hccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~---~e-al~~aDi  202 (420)
                      ..+|.|+|.|.+|..+++.|.++|  +++++.|.|+++++.+++.|... +.++.         +++   ++ -++++|.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence            468999999999999999999988  89999999999999998765321 22111         232   22 1568999


Q ss_pred             EEEccChhh-HHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +++++.++. ...++..++.+. |+..++.-.
T Consensus       468 vvv~~~d~~~n~~i~~~ar~~~-p~~~iiaRa  498 (621)
T PRK03562        468 LINAIDDPQTSLQLVELVKEHF-PHLQIIARA  498 (621)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence            999999754 444444444443 444444433

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.44  E-value=0.0064  Score=60.19  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH---------------------H----HHHHHhcCCCCC------
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV---------------------C----QSINEKHCNCRY------  177 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~---------------------~----~~i~~~g~~~~~------  177 (420)
                      ||.|||+|..|+.+|..|+..|. .+++++|.+.-.                     +    +.+++.....+.      
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            68999999999999999999995 467777654211                     1    111111100000      


Q ss_pred             --CCCCCCCCc----e-EEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          178 --FPEQKLPEN----V-IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       178 --l~~~~l~~~----i-~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                        .++..+...    . .-...+++.++++|+||.|+-+...+.++..+....  ++++|+..-|+
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~--~k~~I~aalGf  143 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAK--NKLVINAALGF  143 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh--CCcEEEEEecc
Confidence              011111000    0 001124567889999999999888888887775543  34666544444

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.44  E-value=0.01  Score=58.55  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||.|. +|.+++..|.+.|  ..|+++.|...                            ++.+.++++|+||
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI  207 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIV  207 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEE
Confidence            367999999998 9999999999988  79999987321                            3455568999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|++...   .+.  ..+++++.+|+++.
T Consensus       208 ~AtG~~~---~v~--~~~lk~gavViDvg  231 (283)
T PRK14192        208 GAVGKPE---LIK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             EccCCCC---cCC--HHHcCCCCEEEEEE
Confidence            9996332   111  24577888887763

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.42  E-value=0.015  Score=62.80  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH----------------------HH----HHHHHhcCCCC----
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA----------------------VC----QSINEKHCNCR----  176 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~----------------------~~----~~i~~~g~~~~----  176 (420)
                      ..||.|||+|..|+.+|..|++.|. .+++++|.+.=                      ++    +++++.....+    
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~  416 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGH  416 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            4699999999999999999999995 47777775420                      11    11111100000    


Q ss_pred             ----CCCCCCCCCc-e-EE---eCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          177 ----YFPEQKLPEN-V-IA---TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       177 ----~l~~~~l~~~-i-~a---~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                          ..++..+.+. . ..   ...+.+.++++|+||.|+-....+.++..+...  .++++|+..-|+
T Consensus       417 ~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~aAlGf  483 (664)
T TIGR01381       417 RLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISAALGF  483 (664)
T ss_pred             eeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEEecc
Confidence                0011111000 0 00   013456688999999999998888887766443  245666544343

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.39  E-value=0.021  Score=57.78  Aligned_cols=100  Identities=15%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEe-CCHHHhccCCcEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~-td~~eal~~aDiV  203 (420)
                      |||+|+|+ |.||..++..|.+.. .++|..+ +++....+.+.+......| .+..- ...+.+. .++ +...++|+|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~DvV   77 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEP-VASKDVDIV   77 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCH-HHhccCCEE
Confidence            58999996 999999999998865 2577765 4433221222211100001 00000 0112222 233 345789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|+|.....++...+..   .+..+|+++
T Consensus        78 f~a~p~~~s~~~~~~~~~---~G~~VIDls  104 (341)
T TIGR00978        78 FSALPSEVAEEVEPKLAE---AGKPVFSNA  104 (341)
T ss_pred             EEeCCHHHHHHHHHHHHH---CCCEEEECC
Confidence            999998877766655533   466677665

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.35  E-value=0.025  Score=57.25  Aligned_cols=104  Identities=19%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHHhcCCCCCCCCCCCCCce
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV  187 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a--------G~~~~V~-l~~r~----------~~~~~~i~~~g~~~~~l~~~~l~~~i  187 (420)
                      .+||+|+|+|.||..++..|.+.        |.+.+|. +++++          .+.+....+.......+     + ..
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~-----~-~~   75 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADY-----P-EG   75 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccC-----c-cc
Confidence            46999999999999999999765        3224554 45643          23333332221111100     1 11


Q ss_pred             EEeCCHHHhcc--CCcEEEEccChhhH--HHHHHHhhhcCCCCCeEEEeccCC
Q 014700          188 IATTDAKTALL--GADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       188 ~a~td~~eal~--~aDiVIlaVp~~~l--~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ..+.++++.+.  +.|+|+.|+|+...  +...+.+...+..+..||+..|+.
T Consensus        76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p  128 (341)
T PRK06270         76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP  128 (341)
T ss_pred             cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence            12346777663  68999999997432  222233344455677787765544

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.35  E-value=0.016  Score=49.42  Aligned_cols=74  Identities=14%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             CeEEEEc----ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIG----aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++|+|||    .+.+|..+...|.++|  ++|+.++...+.   +                .++.+..+++|.-...|++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~---i----------------~G~~~y~sl~e~p~~iDla   59 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGE---I----------------LGIKCYPSLAEIPEPIDLA   59 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSE---E----------------TTEE-BSSGGGCSST-SEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceE---E----------------CcEEeeccccCCCCCCCEE
Confidence            4799999    6999999999999988  899888654321   0                1345666787733689999


Q ss_pred             EEccChhhHHHHHHHhhhc
Q 014700          204 LHAMPVQFSSSFLEGISDY  222 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~  222 (420)
                      ++++|...+.++++++...
T Consensus        60 vv~~~~~~~~~~v~~~~~~   78 (116)
T PF13380_consen   60 VVCVPPDKVPEIVDEAAAL   78 (116)
T ss_dssp             EE-S-HHHHHHHHHHHHHH
T ss_pred             EEEcCHHHHHHHHHHHHHc
Confidence            9999999999999998764

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.33  E-value=0.013  Score=59.15  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++|.|+|+ |.||+.+++.|+.. | ..++++++|+++.++.+.+.....            . ..++++++.++|+|+
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~g-v~~lilv~R~~~rl~~La~el~~~------------~-i~~l~~~l~~aDiVv  220 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTG-VAELLLVARQQERLQELQAELGGG------------K-ILSLEEALPEADIVV  220 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCC-CCEEEEEcCCHHHHHHHHHHhccc------------c-HHhHHHHHccCCEEE
Confidence            579999998 89999999999854 3 258999999988777766532100            1 125677888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .++...... ++.  ...+++..+++++.
T Consensus       221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA  246 (340)
T PRK14982        221 WVASMPKGV-EID--PETLKKPCLMIDGG  246 (340)
T ss_pred             ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence            988642210 010  12235677888775

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.33  E-value=0.018  Score=50.34  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            68999999999999999999994 4899998773

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK10206 putative oxidoreductase; Provisional

Probab=96.32  E-value=0.018  Score=58.21  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=57.3

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      +.||||||+|.++.- .+..+.....+.+|. +++++++.. +..+..      +      .+..++|.++.+.  +.|+
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~   67 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL   67 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence            469999999997752 344443321125665 678877543 333221      0      1245568888875  5799


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |++|+|.....++......   .++-|+ +-|-+..
T Consensus        68 V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~   99 (344)
T PRK10206         68 VVVCTHADSHFEYAKRALE---AGKNVL-VEKPFTP   99 (344)
T ss_pred             EEEeCCchHHHHHHHHHHH---cCCcEE-EecCCcC
Confidence            9999998877666655443   344443 3565543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.32  E-value=0.011  Score=54.26  Aligned_cols=81  Identities=15%  Similarity=0.315  Sum_probs=55.7

Q ss_pred             CCCeEEEEcccHHHHHHHHH-HH-hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CC
Q 014700          126 RTNKVVVLGGGSFGTAMAAH-VA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~-La-~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~a  200 (420)
                      .+.++.|||+|++|.|++.. +. ++|  .+++ ++|.+++.+      |..   .+++    .+.-.+++++.++  +.
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~---~~~v----~V~~~d~le~~v~~~dv  147 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTK---IGDV----PVYDLDDLEKFVKKNDV  147 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------Ccc---cCCe----eeechHHHHHHHHhcCc
Confidence            45699999999999999987 33 444  5655 688888642      211   1111    2333456666665  78


Q ss_pred             cEEEEccChhhHHHHHHHhhh
Q 014700          201 DYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~  221 (420)
                      |+.|+|||...-+++++.+..
T Consensus       148 ~iaiLtVPa~~AQ~vad~Lv~  168 (211)
T COG2344         148 EIAILTVPAEHAQEVADRLVK  168 (211)
T ss_pred             cEEEEEccHHHHHHHHHHHHH
Confidence            999999999888888877644

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.30  E-value=0.0071  Score=49.61  Aligned_cols=89  Identities=11%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-cCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--CcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~-aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aDi  202 (420)
                      ..||+|+|+|..|.+++..+.+ .|  +. +.++|.++++.      |..   +      .++.+..+.+++.+.  .|+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~~---i------~gipV~~~~~~l~~~~~i~i   65 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GKE---I------GGIPVYGSMDELEEFIEIDI   65 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TSE---E------TTEEEESSHHHHHHHCTTSE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------CcE---E------CCEEeeccHHHhhhhhCCCE
Confidence            3589999999999999865544 34  55 44678877521      100   0      134555566665444  999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      .+++||....++++.++...  -=+.|++++.
T Consensus        66 aii~VP~~~a~~~~~~~~~~--gIk~i~nft~   95 (96)
T PF02629_consen   66 AIITVPAEAAQEVADELVEA--GIKGIVNFTP   95 (96)
T ss_dssp             EEEES-HHHHHHHHHHHHHT--T-SEEEEESS
T ss_pred             EEEEcCHHHHHHHHHHHHHc--CCCEEEEeCC
Confidence            99999999988888887652  1234555543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.29  E-value=0.023  Score=60.35  Aligned_cols=105  Identities=13%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC---CCCc-eEEe-CCH--------
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIAT-TDA--------  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~---l~~~-i~a~-td~--------  193 (420)
                      ..||.|+|+|.+|...+..+...|  .+|+++|+++++.+..++.|.....++...   .... ++.. .+.        
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            469999999999999988888888  689999999998888777654311010000   0000 1111 111        


Q ss_pred             HHhccCCcEEEEccChhh--HHHH-HHHhhhcCCCCCeEEEec
Q 014700          194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS  233 (420)
Q Consensus       194 ~eal~~aDiVIlaVp~~~--l~~v-l~~i~~~l~~~~iVVs~s  233 (420)
                      .+.++++|+||-|+-...  -..+ .++....++++..|+.+.
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence            222367999999986422  1122 355556667788777664

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.27  E-value=0.017  Score=50.97  Aligned_cols=73  Identities=21%  Similarity=0.360  Sum_probs=57.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|.|+| ....|..++..|.+.|  ..|++.+++.                            .++++.+++||+|+
T Consensus        27 ~gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t----------------------------~~l~~~v~~ADIVv   76 (140)
T cd05212          27 DGKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKT----------------------------IQLQSKVHDADVVV   76 (140)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence            368999999 5889999999999987  8999887532                            15667789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .++....+   ++  ..+++++++|+++.
T Consensus        77 sAtg~~~~---i~--~~~ikpGa~Vidvg  100 (140)
T cd05212          77 VGSPKPEK---VP--TEWIKPGATVINCS  100 (140)
T ss_pred             EecCCCCc---cC--HHHcCCCCEEEEcC
Confidence            99987643   21  45688999998764

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.26  E-value=0.0066  Score=57.17  Aligned_cols=79  Identities=14%  Similarity=0.239  Sum_probs=50.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La--~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      ..+|+|||+|.+|..++..+.  ..|  +++. ++|++++....         ...+.    .+...+++.+.++  +.|
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~---------~i~g~----~v~~~~~l~~li~~~~iD  148 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGT---------KIGGI----PVYHIDELEEVVKENDIE  148 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCC---------EeCCe----EEcCHHHHHHHHHHCCCC
Confidence            468999999999999998643  334  6766 56776643211         01111    1122235566554  499


Q ss_pred             EEEEccChhhHHHHHHHhh
Q 014700          202 YCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~  220 (420)
                      .+++|+|.....++.+.+.
T Consensus       149 ~ViIa~P~~~~~~i~~~l~  167 (213)
T PRK05472        149 IGILTVPAEAAQEVADRLV  167 (213)
T ss_pred             EEEEeCCchhHHHHHHHHH
Confidence            9999999887777665554

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.25  E-value=0.0055  Score=55.46  Aligned_cols=105  Identities=17%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCC-----------ceEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPE-----------NVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~-----------~i~a~td~~  194 (420)
                      ..||.|+|+|..|..-+..|..-|  ++|+.++.+++..+.+...+....... ......           ...-...+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            479999999999999999999988  999999999987777766442211110 000000           000112345


Q ss_pred             HhccCCcEEEEccC--hhhHHHHH-HHhhhcCCCCCeEEEec
Q 014700          195 TALLGADYCLHAMP--VQFSSSFL-EGISDYVDPGLPFISLS  233 (420)
Q Consensus       195 eal~~aDiVIlaVp--~~~l~~vl-~~i~~~l~~~~iVVs~s  233 (420)
                      +.++.+|+||.+.-  ......++ ++....++++.+|+.++
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            66778999997653  22222222 33344466888888875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.24  E-value=0.011  Score=56.81  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ...||.|+|+|.+|+.+|..|++.|. .+++++|.+.-
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v   59 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV   59 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence            35799999999999999999999995 58889888753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.012  Score=60.88  Aligned_cols=36  Identities=31%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      .++|.|||.|.+|.++|..|.+.|  ++|+++|+++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~   38 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA   38 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence            468999999999999999999998  899999987653

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.24  E-value=0.012  Score=61.29  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a--------G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      .+||+|||+|.||..++..|.++        |.+.+|. +++|+.++.+     +..        + .....++|+++.+
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~-----~~~--------~-~~~~~~~d~~~ll   68 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR-----GVD--------L-PGILLTTDPEELV   68 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc-----CCC--------C-cccceeCCHHHHh
Confidence            47999999999999999888654        2123443 5688765422     110        1 1234567888877


Q ss_pred             c--CCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          198 L--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       198 ~--~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      .  +.|+|+.+++.. ...+.+   ...++.++-||+.-|...
T Consensus        69 ~d~~iDvVve~tg~~~~~~~~~---~~aL~~GkhVVtaNK~~~  108 (426)
T PRK06349         69 NDPDIDIVVELMGGIEPARELI---LKALEAGKHVVTANKALL  108 (426)
T ss_pred             hCCCCCEEEECCCCchHHHHHH---HHHHHCCCeEEEcCHHHH
Confidence            5  479999998753 223333   334456777776655443

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.20  E-value=0.017  Score=53.90  Aligned_cols=35  Identities=11%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.++..|+.+|. .+++++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            5799999999999999999999995 5899998763

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.15  E-value=0.016  Score=58.63  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=57.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDi  202 (420)
                      ..+||+|||+ |..|..+.+.|.+.++ ..++..+......-+.+..        .+.    .+.+. .+. +.+.++|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--------~~~----~~~v~~~~~-~~~~~~D~   72 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--------EGR----DYTVEELTE-DSFDGVDI   72 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--------cCc----eeEEEeCCH-HHHcCCCE
Confidence            3579999996 9999999999998762 1244444332211011111        110    11221 133 34578999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ||+|+|.....++..++..   .+..||+++.
T Consensus        73 vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~  101 (344)
T PLN02383         73 ALFSAGGSISKKFGPIAVD---KGAVVVDNSS  101 (344)
T ss_pred             EEECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence            9999999877777665533   5788998874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.15  E-value=0.0072  Score=59.66  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .-||+|||.|.+|+--|+....-|  -+|++.+++.++++.+......       .+.....-..++++++..+|++|-+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~-------rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGG-------RVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCc-------eeEEEEcCHHHHHHHhhhccEEEEE
Confidence            358999999999999888887766  8999999998876665543110       0000001112567888999999977


Q ss_pred             cC---hhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MP---VQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp---~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |-   ..+=+=+.+++.+.++++.+||++.
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence            63   2222234456667788999998875

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.07  E-value=0.022  Score=53.72  Aligned_cols=70  Identities=21%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             EEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       130 I~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+|+|+ |.+|..++..|.+.+  ++|++..|+..  ..+.+...|.... ..+.      .-..++.++++++|.||++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~------~~~~~l~~al~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVV-EADY------DDPESLVAALKGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEE-ES-T------T-HHHHHHHHTTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEe-eccc------CCHHHHHHHHcCCceEEee
Confidence            789997 999999999999987  99999999863  4566666543211 0000      0112456678999999999


Q ss_pred             cC
Q 014700          207 MP  208 (420)
Q Consensus       207 Vp  208 (420)
                      ++
T Consensus        72 ~~   73 (233)
T PF05368_consen   72 TP   73 (233)
T ss_dssp             SS
T ss_pred             cC
Confidence            99

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.07  E-value=0.018  Score=52.04  Aligned_cols=73  Identities=23%  Similarity=0.331  Sum_probs=50.7

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|.|||-+ .+|.+++..|.+.|  ..|++.....                            .++++.++.||+||
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T----------------------------~~l~~~~~~ADIVV   84 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKT----------------------------KNLQEITRRADIVV   84 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTS----------------------------SSHHHHHTTSSEEE
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCC----------------------------CcccceeeeccEEe
Confidence            47899999976 69999999999988  8999876532                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .++....+   ++  ..+++++.+||++.
T Consensus        85 sa~G~~~~---i~--~~~ik~gavVIDvG  108 (160)
T PF02882_consen   85 SAVGKPNL---IK--ADWIKPGAVVIDVG  108 (160)
T ss_dssp             E-SSSTT----B---GGGS-TTEEEEE--
T ss_pred             eeeccccc---cc--cccccCCcEEEecC
Confidence            99986544   11  45688999998873

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.03  E-value=0.019  Score=57.99  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=60.1

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCc
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGAD  201 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aD  201 (420)
                      .+.+||+|||+ |..|.-+.+.|.+..+ ..++..+..+...       |.... +.+.    .+.+. ++++. ..++|
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------G~~~~-~~~~----~~~v~-~~~~~~~~~~D   68 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------GETLR-FGGK----SVTVQ-DAAEFDWSQAQ   68 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------CceEE-ECCc----ceEEE-eCchhhccCCC
Confidence            45689999997 9999999999998431 2466666543221       21111 1111    22332 33332 36899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ++|+|+|.....++..++..   .+..||+++.
T Consensus        69 vvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~   98 (336)
T PRK08040         69 LAFFVAGREASAAYAEEATN---AGCLVIDSSG   98 (336)
T ss_pred             EEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence            99999998877777666543   5788888874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.02  E-value=0.02  Score=57.89  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            35799999999999999999999994 4899999874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.01  E-value=0.017  Score=57.09  Aligned_cols=79  Identities=20%  Similarity=0.243  Sum_probs=48.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCH---HHHHHHHHhcCCCCCCCCCCCC-CceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP---AVCQSINEKHCNCRYFPEQKLP-ENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~---~~~~~i~~~g~~~~~l~~~~l~-~~i~a~td~~eal~~aD  201 (420)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|++   ++.+++.+.- ... .+..... ..+.-..+.++.+..+|
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~-~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQE-VPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhc-CCCceeEEechhhhhHHHhhhccCC
Confidence            468999999999999999999988  5 499999986   4555544321 000 0000000 00000012233456789


Q ss_pred             EEEEccCh
Q 014700          202 YCLHAMPV  209 (420)
Q Consensus       202 iVIlaVp~  209 (420)
                      +||-++|.
T Consensus       202 ilINaTp~  209 (289)
T PRK12548        202 ILVNATLV  209 (289)
T ss_pred             EEEEeCCC
Confidence            99999884

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.00  E-value=0.042  Score=55.33  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhcc-CCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALL-GADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~-~aDiVI  204 (420)
                      ..+|+|+|+|.+|+.-.+.+...|  .+|+.++|++++.+..++.|....+          ... .+..+.++ .+|+||
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~ii  234 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAII  234 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEEE
Confidence            479999999988885555555567  8999999999998888877643211          111 12222232 399999


Q ss_pred             EccChhhHHHHHHHhh
Q 014700          205 HAMPVQFSSSFLEGIS  220 (420)
Q Consensus       205 laVp~~~l~~vl~~i~  220 (420)
                      .+++...+...++-+.
T Consensus       235 ~tv~~~~~~~~l~~l~  250 (339)
T COG1064         235 DTVGPATLEPSLKALR  250 (339)
T ss_pred             ECCChhhHHHHHHHHh
Confidence            9999555555554443

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.00  E-value=0.018  Score=47.86  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||.|.+|..=+..|.+.|  .+|++++++.+..+    ....            + .....++.+.++|+||.|
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~a   67 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFAA   67 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEec
Confidence            579999999999999999999998  89999998851111    1110            0 011233447889999999


Q ss_pred             cChhhHHHHHHHhh
Q 014700          207 MPVQFSSSFLEGIS  220 (420)
Q Consensus       207 Vp~~~l~~vl~~i~  220 (420)
                      +....+.+.+.+..
T Consensus        68 t~d~~~n~~i~~~a   81 (103)
T PF13241_consen   68 TDDPELNEAIYADA   81 (103)
T ss_dssp             SS-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99877665554443

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.98  E-value=0.021  Score=56.16  Aligned_cols=72  Identities=18%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             CCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|+|||-|. +|.++|..|.+.+  ..|+++.+..                            .++++.++.||+||.
T Consensus       159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~  208 (285)
T PRK10792        159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV  208 (285)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence            68999999888 9999999999887  8999986531                            156777899999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ++....+   +.  ..+++++++||++.
T Consensus       209 avG~p~~---v~--~~~vk~gavVIDvG  231 (285)
T PRK10792        209 AVGKPGF---IP--GEWIKPGAIVIDVG  231 (285)
T ss_pred             cCCCccc---cc--HHHcCCCcEEEEcc
Confidence            9953332   11  26678899998874

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.96  E-value=0.024  Score=52.89  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            4799999999999999999999995 6899998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.91  E-value=0.05  Score=57.07  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|+|||+    |.+|..+...|.+.|+..+|+.++...+.   +                .++.+..+++++-...|+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i----------------~G~~~~~sl~~lp~~~Dl   67 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---I----------------LGVKAYPSVLEIPDPVDL   67 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---c----------------CCccccCCHHHCCCCCCE
Confidence            578999999    88999999999998832267666554321   1                123445577776567899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +++++|...+.++++++... .- +.+|.++.|+..
T Consensus        68 avi~vp~~~~~~~l~e~~~~-gv-~~~vi~s~gf~e  101 (447)
T TIGR02717        68 AVIVVPAKYVPQVVEECGEK-GV-KGAVVITAGFKE  101 (447)
T ss_pred             EEEecCHHHHHHHHHHHHhc-CC-CEEEEECCCccc
Confidence            99999999999999888663 22 234456777754

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.87  E-value=0.022  Score=56.11  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||.| .+|..+|..|.+.|  ..|+++....                            .++++.++.||+||
T Consensus       156 ~Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV  205 (285)
T PRK14191        156 KGKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVC  205 (285)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEE
Confidence            36899999998 99999999999988  8999874321                            14556688999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+....+   +.  ..+++++++||.+.
T Consensus       206 ~AvG~p~~---i~--~~~vk~GavVIDvG  229 (285)
T PRK14191        206 VGVGKPDL---IK--ASMVKKGAVVVDIG  229 (285)
T ss_pred             EecCCCCc---CC--HHHcCCCcEEEEee
Confidence            99985543   11  34568899998874

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.83  E-value=0.2  Score=47.32  Aligned_cols=81  Identities=19%  Similarity=0.111  Sum_probs=56.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||.|.+|..=+..|.+.|  .+|+++..+. +....+.+.+.. .      ..   .-.-++++ +.++++||.
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~------~~---~~~~~~~~-~~~~~lvia   78 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-K------WI---EREFDAED-LDDAFLVIA   78 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-c------hh---hcccChhh-hcCceEEEE
Confidence            579999999999999999999998  8999998765 445555544320 0      00   00113444 456999999


Q ss_pred             ccChhhHHHHHHHhh
Q 014700          206 AMPVQFSSSFLEGIS  220 (420)
Q Consensus       206 aVp~~~l~~vl~~i~  220 (420)
                      |+.+..+.+-+.+..
T Consensus        79 At~d~~ln~~i~~~a   93 (210)
T COG1648          79 ATDDEELNERIAKAA   93 (210)
T ss_pred             eCCCHHHHHHHHHHH
Confidence            999877665554443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.82  E-value=0.037  Score=57.70  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=46.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~----~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      .++|.|+|+|.+|.++|..|++.|  ++|++++++. +.+    +++.+.+..            +...+..++...++|
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~d   70 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGVD   70 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcCC
Confidence            479999999999999999999999  9999999975 222    222222211            111112234456799


Q ss_pred             EEEEccC
Q 014700          202 YCLHAMP  208 (420)
Q Consensus       202 iVIlaVp  208 (420)
                      +||.+.-
T Consensus        71 ~vv~~~g   77 (450)
T PRK14106         71 LVVVSPG   77 (450)
T ss_pred             EEEECCC
Confidence            9999764

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=95.82  E-value=0.017  Score=59.80  Aligned_cols=81  Identities=27%  Similarity=0.314  Sum_probs=51.7

Q ss_pred             CCCeEEEEcccHHHHHHHH--HHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGGGSFGTAMAA--HVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~--~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ..+||+|||+|..+++--.  .|.+.- + ..++.++|.++++.+.+...  ..+++.....+..+..++|.++|+++||
T Consensus         2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--~~~~v~~~g~~~kv~~ttd~~eAl~gAd   79 (442)
T COG1486           2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--AKKLVEEAGAPVKVEATTDRREALEGAD   79 (442)
T ss_pred             CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--HHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence            3579999999998876322  222221 0 25899999998876532211  0011111123345788999999999999


Q ss_pred             EEEEccC
Q 014700          202 YCLHAMP  208 (420)
Q Consensus       202 iVIlaVp  208 (420)
                      +|+.++-
T Consensus        80 fVi~~~r   86 (442)
T COG1486          80 FVITQIR   86 (442)
T ss_pred             EEEEEEe
Confidence            9999853

>PRK06153 hypothetical protein; Provisional

Probab=95.76  E-value=0.027  Score=57.62  Aligned_cols=109  Identities=17%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-C-CCCCCCC--C----------CCCCceE---
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-C-NCRYFPE--Q----------KLPENVI---  188 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-~-~~~~l~~--~----------~l~~~i~---  188 (420)
                      ...+|+|||+|..|+.++..|++.|. -+++++|.+.=....+++.- . ....++.  .          .+...+.   
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~  253 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP  253 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence            35799999999999999999999985 58888886621111111110 0 0000000  0          0001121   


Q ss_pred             --EeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          189 --ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       189 --a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                        +..+..+.+.++|+||.|+-....+.++.+....  .+..+|.+.-|+.
T Consensus       254 ~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~  302 (393)
T PRK06153        254 EYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLE  302 (393)
T ss_pred             ecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeecce
Confidence              1112223477899999999987777777655432  2556776654444

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.76  E-value=0.037  Score=54.52  Aligned_cols=97  Identities=19%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|+|+|-.+.+++..|++.|. .++++++|+.++.+++.+......  +..    ......+++. ..++|+||-|
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~--~~~----~~~~~~~~~~-~~~~dliINa  197 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELG--AAV----EAAALADLEG-LEEADLLINA  197 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc--ccc----cccccccccc-ccccCEEEEC
Confidence            4789999999999999999999983 589999999999888876421100  000    0011122222 2268999999


Q ss_pred             cChhhH----HHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFS----SSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l----~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|..-.    ...+.  ...++++.++..+.
T Consensus       198 Tp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v  226 (283)
T COG0169         198 TPVGMAGPEGDSPVP--AELLPKGAIVYDVV  226 (283)
T ss_pred             CCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence            995211    11122  34466777777764

>PRK08223 hypothetical protein; Validated

Probab=95.75  E-value=0.047  Score=53.87  Aligned_cols=36  Identities=22%  Similarity=0.175  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...||.|||+|.+|+.++..|+++|. .+++++|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            35699999999999999999999996 5888888774

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.73  E-value=0.029  Score=53.57  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=34.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      .+|||.|+|+ |.+|..++..|.+.|  ++|+++.|+++....
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~   56 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKT   56 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHH
Confidence            4689999996 999999999999988  999999998876543

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.73  E-value=0.022  Score=57.67  Aligned_cols=88  Identities=17%  Similarity=0.307  Sum_probs=56.4

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEE
Q 014700          129 KVVVLG-GGSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC  203 (420)
Q Consensus       129 kI~IIG-aGamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiV  203 (420)
                      ||+||| .|..|..+...|.+.+  |.   +.++.+.+..-+.+.        +.+.    .+... .+. +.+.++|++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~--hp~~~l~~~as~~~~g~~~~--------~~~~----~~~~~~~~~-~~~~~~D~v   65 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERN--FPIDKLVLLASDRSAGRKVT--------FKGK----ELEVNEAKI-ESFEGIDIA   65 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCC--CChhhEEEEeccccCCCeee--------eCCe----eEEEEeCCh-HHhcCCCEE
Confidence            699999 5999999999999876  44   334545433211221        1110    11221 133 335789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |+|+|.....++...+..   .+..||+++.
T Consensus        66 ~~a~g~~~s~~~a~~~~~---~G~~VID~ss   93 (339)
T TIGR01296        66 LFSAGGSVSKEFAPKAAK---CGAIVIDNTS   93 (339)
T ss_pred             EECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence            999999888777766543   5677887764

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.70  E-value=0.037  Score=53.35  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...||+|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            35799999999999999999999995 5888888763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.65  E-value=0.026  Score=61.80  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence            4689999999999999999999998  8999999775

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.64  E-value=0.056  Score=55.33  Aligned_cols=92  Identities=16%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-------------------HHHHHHHhcCCCCCCCCCCCCC-c
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-------------------VCQSINEKHCNCRYFPEQKLPE-N  186 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-------------------~~~~i~~~g~~~~~l~~~~l~~-~  186 (420)
                      ..+|.|||+|.+|+.++..|+..|. .+++++|.+.=                   +++.+.+. +. ...|...+.. .
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~-l~-~~np~v~i~~~~  117 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAER-LK-EIQPDIRVNALR  117 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHH-HH-HHCCCCeeEEee
Confidence            5699999999999999999999985 58999987731                   11111110 00 0012211100 0


Q ss_pred             eEEe-CCHHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700          187 VIAT-TDAKTALLGADYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       187 i~a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~~  221 (420)
                      -.+. .+..+.++++|+||-|+-....+..+.++..
T Consensus       118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~  153 (370)
T PRK05600        118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE  153 (370)
T ss_pred             eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence            0111 2345668899999999998777777766543

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.63  E-value=0.29  Score=46.64  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.++..=+..|.+.|  .+|+++...- +.++.+.+.+. ....         .-.-+..+ +.++++||.
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~---------~r~~~~~d-l~g~~LVia   91 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI---------KGNYDKEF-IKDKHLIVI   91 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCcEEEE
Confidence            579999999999999999999988  8999997653 22344443221 1100         00003333 678999999


Q ss_pred             ccChhhHHHHHHHhh
Q 014700          206 AMPVQFSSSFLEGIS  220 (420)
Q Consensus       206 aVp~~~l~~vl~~i~  220 (420)
                      |+....+-..+....
T Consensus        92 ATdD~~vN~~I~~~a  106 (223)
T PRK05562         92 ATDDEKLNNKIRKHC  106 (223)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999877665554444

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.62  E-value=0.028  Score=56.39  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      ||||.|.|+ |.+|+.++..|.+++ +++|++++|+.+....
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~r~~~~~~~   41 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMDMQTDRLGD   41 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEeCcHHHHHH
Confidence            579999997 999999999998763 2899999987654433

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.60  E-value=0.015  Score=59.76  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |.+|.|||+|.+|.+.|..|++.|  ++|+++++.+
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            359999999999999999999998  8999999875

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.58  E-value=0.029  Score=56.03  Aligned_cols=80  Identities=18%  Similarity=0.285  Sum_probs=54.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ++||+|||+ |..|.-+.+.|.+.. ..++.....+...         .            +   .+.++...++|++|+
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl   56 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL   56 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence            579999995 999999999999874 2344433322210         0            0   122334568999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |+|...-.++..++..   .+..||+++.
T Consensus        57 alp~~~s~~~~~~~~~---~g~~VIDlSa   82 (313)
T PRK11863         57 CLPDDAAREAVALIDN---PATRVIDAST   82 (313)
T ss_pred             CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence            9998877777766643   5778888874

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.58  E-value=0.074  Score=53.94  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=60.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-HHHhcCCCCC--CCCCCCCCceEE-eCCHHHhccCCc
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-INEKHCNCRY--FPEQKLPENVIA-TTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~-i~~~g~~~~~--l~~~~l~~~i~a-~td~~eal~~aD  201 (420)
                      ++||+|+| .|.+|..+...|.+.. ..++.++.+++....+ +........|  +++. . ..+.+ ..++++ +.++|
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~D   78 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-V-ADMEVVSTDPEA-VDDVD   78 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccccccccc-c-cceEEEeCCHHH-hcCCC
Confidence            57999998 6999999999999764 3588877555533211 1110000000  0000 0 11222 225544 57899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +||+|+|.....++.+.+..   .+..+|+++.
T Consensus        79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~  108 (349)
T PRK08664         79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS  108 (349)
T ss_pred             EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence            99999999876666655433   4666777664

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.58  E-value=0.069  Score=45.05  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             cccHHHHHHHHHHHhcCC--CCeEE-EEeCC----HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEEE
Q 014700          134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRD----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL  204 (420)
Q Consensus       134 GaGamG~alA~~La~aG~--~~~V~-l~~r~----~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiVI  204 (420)
                      |.|.||..++..|.+...  +.+|. +++|+    ........                ....++++++.+.  +.|+||
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~dvvV   64 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP----------------DEAFTTDLEELIDDPDIDVVV   64 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT----------------HSCEESSHHHHHTHTT-SEEE
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc----------------cccccCCHHHHhcCcCCCEEE
Confidence            899999999999987620  14555 55676    11111111                1245568888777  899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      -|..+..+.+.+..+   ++.+.-||+..||...
T Consensus        65 E~t~~~~~~~~~~~~---L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   65 ECTSSEAVAEYYEKA---LERGKHVVTANKGALA   95 (117)
T ss_dssp             E-SSCHHHHHHHHHH---HHTTCEEEES-HHHHH
T ss_pred             ECCCchHHHHHHHHH---HHCCCeEEEECHHHhh
Confidence            998887777665554   4468889988887544

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.57  E-value=0.038  Score=56.62  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ...||.|||+|..|+.++..|++.|. .+++++|++
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            35699999999999999999999994 489999987

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.45  E-value=0.099  Score=51.67  Aligned_cols=75  Identities=24%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHHhcCCCCCCCCCCCCCceEEeC--C---HHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--D---AKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~---~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d---~~eal~  198 (420)
                      .+++.|||+|..+.+++..|+..|. .+|++++|++   ++++.+.+.- ...+      ...+...+  +   +.+.+.
T Consensus       124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence            4689999999999999999998873 5899999994   4666665431 1000      00111111  1   223456


Q ss_pred             CCcEEEEccCh
Q 014700          199 GADYCLHAMPV  209 (420)
Q Consensus       199 ~aDiVIlaVp~  209 (420)
                      ++|+||-|+|.
T Consensus       196 ~aDivINaTp~  206 (288)
T PRK12749        196 SADILTNGTKV  206 (288)
T ss_pred             cCCEEEECCCC
Confidence            78999999985

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.41  E-value=0.067  Score=52.31  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            4699999999999999999999985 5899998774

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.41  E-value=0.047  Score=55.36  Aligned_cols=92  Identities=16%  Similarity=0.302  Sum_probs=58.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aD  201 (420)
                      .+||+|||+ |.+|.-|.+.|.+.- +++   +.++......       |.... +.+.    .+.+. .++++ +.++|
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~-~f~v~~l~~~aS~~sa-------Gk~~~-~~~~----~l~v~~~~~~~-~~~~D   70 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKET-KFNIAEVTLLSSKRSA-------GKTVQ-FKGR----EIIIQEAKINS-FEGVD   70 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCC-CCCcccEEEEECcccC-------CCCee-eCCc----ceEEEeCCHHH-hcCCC
Confidence            479999997 999999999999532 255   5555543211       21111 1111    12221 24444 57899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      ++|+|+|.....++...+..   .+..||+++.-
T Consensus        71 ivf~a~~~~~s~~~~~~~~~---~G~~VID~Ss~  101 (347)
T PRK06728         71 IAFFSAGGEVSRQFVNQAVS---SGAIVIDNTSE  101 (347)
T ss_pred             EEEECCChHHHHHHHHHHHH---CCCEEEECchh
Confidence            99999998877777766533   57888888743

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.41  E-value=0.07  Score=56.01  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=45.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      .+||+|+|.|.-|.++|..|.+.|  ++|+++|+++.     ..+.+.+.|..            +.......+.+.++|
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d   79 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD   79 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence            579999999999999999999998  99999997642     12334443321            111112223357899


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      +||.+
T Consensus        80 lVV~S   84 (458)
T PRK01710         80 VIFKT   84 (458)
T ss_pred             EEEEC
Confidence            99887

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.40  E-value=0.07  Score=52.63  Aligned_cols=76  Identities=21%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiVI  204 (420)
                      .+++.|+|+|-.|.+++..|++.|. .+|++++|+.++++.+.+. .+..+ +..    .+...+  +.++.+..+|+||
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~-~~~~~-~~~----~~~~~~~~~~~~~~~~~divI  199 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADV-INNAV-GRE----AVVGVDARGIEDVIAAADGVV  199 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH-Hhhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence            4689999999999999999999873 5899999999988888653 11000 000    011111  1223356789999


Q ss_pred             EccCh
Q 014700          205 HAMPV  209 (420)
Q Consensus       205 laVp~  209 (420)
                      -++|.
T Consensus       200 NaTp~  204 (283)
T PRK14027        200 NATPM  204 (283)
T ss_pred             EcCCC
Confidence            98883

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.38  E-value=0.17  Score=49.41  Aligned_cols=44  Identities=11%  Similarity=0.367  Sum_probs=39.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .++++.|-|| +.+|..+|..|+++|  ++|+++.|++++++++.++
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~   49 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE   49 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence            4578999996 999999999999999  9999999999998888763

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.38  E-value=0.039  Score=55.23  Aligned_cols=77  Identities=18%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH---HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC---QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~---~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ..|+|+|-|+ |.+|+.+...|.+.|  |.|..-.|+++.-   +.+.+.....+.+  ..+...+....+.++++.+||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKERL--KLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcccc--eEEeccccccchHHHHHhCCC
Confidence            4689999996 999999999999999  9999999998752   2233221110000  001112333456788999999


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      .||.+
T Consensus        81 gVfH~   85 (327)
T KOG1502|consen   81 GVFHT   85 (327)
T ss_pred             EEEEe
Confidence            99964

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.37  E-value=0.03  Score=43.94  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=30.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||.|||+|..|.-+|..|++.|  .+|+++.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccc
Confidence            6899999999999999999988  8999999875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.31  E-value=0.11  Score=51.94  Aligned_cols=79  Identities=16%  Similarity=0.295  Sum_probs=54.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .||+|+|+ |..|.-+.+.|+... +.++....-+..         ..               ..+.++.+.++|++|+|
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~---------~~---------------~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR---------KD---------------AAERAKLLNAADVAILC   56 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc---------cC---------------cCCHhHhhcCCCEEEEC
Confidence            48999995 999999999999864 244443322111         00               01344556789999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|.....++...+.   ..+..||+++.
T Consensus        57 lp~~~s~~~~~~~~---~~g~~VIDlSa   81 (310)
T TIGR01851        57 LPDDAAREAVSLVD---NPNTCIIDAST   81 (310)
T ss_pred             CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence            99887777766653   35778888874

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.27  E-value=0.056  Score=53.03  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=51.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHH---HhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAK---TALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~---eal~~aDiV  203 (420)
                      .||+|||.|.+-...-......+.+..|..+|++++..+.-++-- .    ....+..++.+. .|..   ..+.++|+|
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv-~----~~~~L~~~m~f~~~d~~~~~~dl~~~DvV  196 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLV-A----SDLGLSKRMSFITADVLDVTYDLKEYDVV  196 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHH-H-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-h----hcccccCCeEEEecchhccccccccCCEE
Confidence            499999999998876555544432257889999997654332210 0    000112233332 2322   225688999


Q ss_pred             EEccChh----hHHHHHHHhhhcCCCCCeEEE
Q 014700          204 LHAMPVQ----FSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       204 IlaVp~~----~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      ++|--..    ...++++.+.+++++|+.|+.
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence            9987655    788999999999999997764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.26  E-value=0.34  Score=48.66  Aligned_cols=94  Identities=18%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCC--CCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPE--QKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~--~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ++||+|+|+ |.+|..|...|.+..+..+ +.++...+..-++-      .. +.+  ...+..+   .+.. ..+++|+
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~------~~-f~~~~~~v~~~~---~~~~-~~~~~Di   69 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY------IE-FGGKSIGVPEDA---ADEF-VFSDVDI   69 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc------cc-ccCccccCcccc---cccc-ccccCCE
Confidence            479999996 9999999999999543344 55555443221110      11 111  1111111   1222 2568999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|.|.+...-+++..++..   .|.+||+.+.
T Consensus        70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS   98 (334)
T COG0136          70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS   98 (334)
T ss_pred             EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence            9999998777777776654   5778887654

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.049  Score=53.50  Aligned_cols=73  Identities=26%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|.|||-+ ..|.++|..|...|  ..|+++.++..                            ++++.+++||+||
T Consensus       151 ~Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI  200 (279)
T PRK14178        151 AGKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILV  200 (279)
T ss_pred             CCCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEE
Confidence            36899999988 99999999999887  89998876431                            4566788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +.  ..+++++++||++.
T Consensus       201 ~Avgk~~l---v~--~~~vk~GavVIDVg  224 (279)
T PRK14178        201 SAAGKAGF---IT--PDMVKPGATVIDVG  224 (279)
T ss_pred             ECCCcccc---cC--HHHcCCCcEEEEee
Confidence            99984332   11  23468999998874

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.25  E-value=0.14  Score=52.27  Aligned_cols=93  Identities=13%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~---V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      |++|+|||+ |.+|.-|...|.+.- ++.   +.++.....        +.....+.+..  ..+....+.++ +.++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~-~f~~~~l~~~ss~~s--------g~~~~~f~g~~--~~v~~~~~~~~-~~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEEN-DFDLIEPVFFSTSQA--------GGAAPSFGGKE--GTLQDAFDIDA-LKKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCC-CCCcCcEEEecchhh--------CCcccccCCCc--ceEEecCChhH-hcCCCE
Confidence            479999997 999999998554432 244   666544211        11111122211  11222223444 578999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~--~iVVs~sn  234 (420)
                      +|+|+|.....++..++..   .+  .+||+.+.
T Consensus        69 vf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss   99 (369)
T PRK06598         69 IITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS   99 (369)
T ss_pred             EEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence            9999999887777766644   45  45888764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.21  E-value=0.11  Score=55.09  Aligned_cols=67  Identities=19%  Similarity=0.226  Sum_probs=47.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|+|+|..|.+.+..|...|  ++|+++|+.++..+.+.+.|..  +          .......+.+.++|+||.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~--~----------~~~~~~~~~l~~~D~VV~S   77 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA--T----------VSTSDAVQQIADYALVVTS   77 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE--E----------EcCcchHhHhhcCCEEEEC
Confidence            468999999999999999999988  8999999876655544443321  1          0011222346788999886


Q ss_pred             c
Q 014700          207 M  207 (420)
Q Consensus       207 V  207 (420)
                      -
T Consensus        78 p   78 (488)
T PRK03369         78 P   78 (488)
T ss_pred             C
Confidence            4

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.21  E-value=0.12  Score=52.03  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHH-hcCCCCC-CCC--CCC-CCceEEeCCHHHhccCCcEE
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC  203 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~-~g~~~~~-l~~--~~l-~~~i~a~td~~eal~~aDiV  203 (420)
                      |+|+|.|.||...+..+.+.. +.+|.. .+.+++....+.. .+....+ .+.  ..+ ..++.+..++++.+.++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            689999999999999987653 366664 4566664444433 2222110 111  011 12355666789988899999


Q ss_pred             EEccChhh
Q 014700          204 LHAMPVQF  211 (420)
Q Consensus       204 IlaVp~~~  211 (420)
                      +.|+|...
T Consensus        80 ve~Tp~~~   87 (333)
T TIGR01546        80 VDATPGGI   87 (333)
T ss_pred             EECCCCCC
Confidence            99999643

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.19  E-value=0.016  Score=58.25  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=57.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHHhcCCCCC----CCCCCCC-CceEEeCCHHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLP-ENVIATTDAKT  195 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~a------G~~~~V~-l~~r~~~~~~~i~~~g~~~~~----l~~~~l~-~~i~a~td~~e  195 (420)
                      |||+|||.|++|..++..|.+.      |.+.+|. +.+++...   +++.|++...    .....+. .... ..++++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l---~~~~Gldl~~l~~~~~~g~l~~~~~~-~~~~~~   76 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY---YNERGLDIGKIISYKEKGRLEEIDYE-KIKFDE   76 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc---cCCcCCChHHHHHHHhcCccccCCCC-cCCHHH
Confidence            5999999999999999999873      3234544 44554311   1111111100    0000000 0000 013444


Q ss_pred             hc-cCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          196 AL-LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       196 al-~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      .+ .++|++|-|+++.. -......+...++.+.-||...||...
T Consensus        77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA  121 (326)
T PRK06392         77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA  121 (326)
T ss_pred             HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence            32 46899999998421 112244445566778889988887543

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.18  E-value=0.038  Score=51.36  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=59.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceE-EeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-ATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~-a~td~~eal~~aDiV  203 (420)
                      ..++|+||| ...+|.++|..|.+.|  ..|++++.+.-..  ..+ +...+    .... ... ...++.+.++.||+|
T Consensus        61 ~GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~-~~~~~----hs~t-~~~~~~~~l~~~~~~ADIV  130 (197)
T cd01079          61 YGKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTR-GESIR----HEKH-HVTDEEAMTLDCLSQSDVV  130 (197)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--ccc-ccccc----cccc-cccchhhHHHHHhhhCCEE
Confidence            368999999 5788999999999987  8999997543211  000 00000    0000 000 001266778999999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |.|++...+.  +.  .++++++++||++.
T Consensus       131 IsAvG~~~~~--i~--~d~ik~GavVIDVG  156 (197)
T cd01079         131 ITGVPSPNYK--VP--TELLKDGAICINFA  156 (197)
T ss_pred             EEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence            9999965531  11  35678899999873

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.18  E-value=0.026  Score=57.84  Aligned_cols=34  Identities=35%  Similarity=0.491  Sum_probs=31.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+|+|||+|.+|.+.|..|++.|  ++|++++++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence            68999999999999999999998  89999999753

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.15  E-value=0.26  Score=48.84  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--C
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--A  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~-V~l~~r~--~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--a  200 (420)
                      ..||+|.|. |.+|..+...|.+.|  ++ |..+++.  .+   .+                .++.+..+++++-+.  .
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~---~v----------------~G~~~y~sv~dlp~~~~~   66 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGT---TV----------------LGLPVFNTVAEAVEATGA   66 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCC---eE----------------eCeeccCCHHHHhhccCC
Confidence            469999996 999999999999877  55 3334443  11   11                134556678776555  7


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |+.+++||...+.+++++.... . -+.+|.++.|+..
T Consensus        67 DlAvi~vp~~~v~~~l~e~~~~-g-vk~avI~s~Gf~~  102 (291)
T PRK05678         67 NASVIYVPPPFAADAILEAIDA-G-IDLIVCITEGIPV  102 (291)
T ss_pred             CEEEEEcCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence            9999999999999999887652 1 1234446678764

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.12  E-value=0.066  Score=54.48  Aligned_cols=93  Identities=17%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC----------------CCCCCCCCCC-ceE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC----------------RYFPEQKLPE-NVI  188 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~----------------~~l~~~~l~~-~i~  188 (420)
                      ..||.|||+|.+|+.++..|+..|. .+++++|.+.=....+++.-+ ..                ...|...+.. ...
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~  106 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR  106 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence            5699999999999999999999995 588888877411111111000 00                0011111100 001


Q ss_pred             Ee-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          189 AT-TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       189 a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      .. .+..+.++++|+||.|+-....+.++.++.
T Consensus       107 i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c  139 (355)
T PRK05597        107 LTWSNALDELRDADVILDGSDNFDTRHLASWAA  139 (355)
T ss_pred             cCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence            11 122456789999999998777666666553

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.10  E-value=0.056  Score=53.27  Aligned_cols=73  Identities=25%  Similarity=0.311  Sum_probs=55.6

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||-|. +|.++|..|.+.|  ..|+++....                            .++++.++.||+||
T Consensus       163 ~Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv  212 (287)
T PRK14176        163 EGKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILV  212 (287)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEE
Confidence            468999999988 9999999999887  8999886321                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+--..+   +.  ..+++++++||++.
T Consensus       213 ~AvG~p~~---i~--~~~vk~gavVIDvG  236 (287)
T PRK14176        213 VATGVKHL---IK--ADMVKEGAVIFDVG  236 (287)
T ss_pred             EccCCccc---cC--HHHcCCCcEEEEec
Confidence            97764321   11  34678899998863

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.08  E-value=0.075  Score=56.03  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=31.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||.|||+|..|...|..|++.|  ++|+++++.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence            4579999999999999999999998  8999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.04  E-value=0.054  Score=59.50  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            4679999999999999999999998  9999999764

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.02  E-value=0.12  Score=49.88  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCC-----C----CeEEEEeCCH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKS-----Q----LKVYMLMRDP  162 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~-----~----~~V~l~~r~~  162 (420)
                      ..+..||.|||+|..|+.++..|++.|.     +    .+++++|.+.
T Consensus         8 ~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         8 LSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             HhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3456799999999999999999999741     1    3889998764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06847 hypothetical protein; Provisional

Probab=95.00  E-value=0.027  Score=56.82  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=33.0

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |..+++|.|||+|..|.++|..|++.|  ++|+++++++
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~   37 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDP   37 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            345679999999999999999999998  8999999875

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.94  E-value=0.069  Score=52.63  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       157 ~Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI  206 (284)
T PRK14190        157 SGKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILI  206 (284)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEE
Confidence            468999999 6889999999999887  8999875321                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .++....+   +.  ..+++++++||++.
T Consensus       207 ~AvG~p~~---i~--~~~ik~gavVIDvG  230 (284)
T PRK14190        207 VAVGKPKL---IT--ADMVKEGAVVIDVG  230 (284)
T ss_pred             EecCCCCc---CC--HHHcCCCCEEEEee
Confidence            99975543   11  35678999998873

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.93  E-value=0.03  Score=56.99  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=32.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ..++|.|||+|..|.++|..|++.|  ++|++++|.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence            3579999999999999999999998  89999998753

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.92  E-value=0.15  Score=51.10  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcC-CCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC--cE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG-~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a--Di  202 (420)
                      .-|+||+|+|.|+.-+++.|...- .+|.|+ +.+|+.+++.++.+.+.         +| +.++..+.+|.+++.  |+
T Consensus         6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv   75 (351)
T KOG2741|consen    6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV   75 (351)
T ss_pred             eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence            458999999999999999986542 136766 56898888888877542         22 446777888888765  99


Q ss_pred             EEEccChhhHHHHHHHhhh
Q 014700          203 CLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~  221 (420)
                      |.+++|..+..+++-.+..
T Consensus        76 Vyi~~~~~qH~evv~l~l~   94 (351)
T KOG2741|consen   76 VYISTPNPQHYEVVMLALN   94 (351)
T ss_pred             EEeCCCCccHHHHHHHHHH
Confidence            9999998877776655544

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.92  E-value=0.075  Score=60.38  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ...+||+|||+|.-|.+.|..|++.|  |+|++++..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence            35789999999999999999999998  999999963

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.90  E-value=0.097  Score=55.25  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=33.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      ++||.|+|+|..|.++|..|.+.|  ++|+++|++......
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~   53 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARHK   53 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHHH
Confidence            578999999999999999999998  899999987654433

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.88  E-value=0.1  Score=54.93  Aligned_cols=34  Identities=26%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|..+|..|++.|  ++|+++++.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence            468999999999999999999988  8999999654

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.87  E-value=0.095  Score=51.38  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      +++.|+|+|..+.+++..|++.|. .+|++++|+.++.+.+.+.- ..            ....++.  ...+|+||-|+
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT  186 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT  186 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence            589999999999999999998872 47999999999888887631 10            0000111  24589999999


Q ss_pred             Ch
Q 014700          208 PV  209 (420)
Q Consensus       208 p~  209 (420)
                      |.
T Consensus       187 p~  188 (272)
T PRK12550        187 PI  188 (272)
T ss_pred             cc
Confidence            84

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.87  E-value=0.062  Score=52.79  Aligned_cols=73  Identities=23%  Similarity=0.243  Sum_probs=55.9

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||-+ .+|..+|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       156 ~Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV  205 (281)
T PRK14183        156 KGKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVI  205 (281)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence            46899999987 99999999999887  7998764311                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+.-..+   +.  ..+++++++||++.
T Consensus       206 ~AvGkp~~---i~--~~~vk~gavvIDvG  229 (281)
T PRK14183        206 VGVGKPNL---IT--EDMVKEGAIVIDIG  229 (281)
T ss_pred             EecCcccc---cC--HHHcCCCcEEEEee
Confidence            99985443   11  45678899998863

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.86  E-value=0.13  Score=52.09  Aligned_cols=92  Identities=22%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCC-CCCCCCCCCCceEEeCCHHHhc--cCCcEEEE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTAL--LGADYCLH  205 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~-~~l~~~~l~~~i~a~td~~eal--~~aDiVIl  205 (420)
                      ++.|+|+|.+|...+..+...| ..+|++.|+++++++..++.+... ...+...     .......+..  ..+|++|-
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence            7999999999998877777776 368889999999888777633111 1000000     0000011222  25999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPF  229 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iV  229 (420)
                      |+-...   .+++....++++-.+
T Consensus       245 ~~G~~~---~~~~ai~~~r~gG~v  265 (350)
T COG1063         245 AVGSPP---ALDQALEALRPGGTV  265 (350)
T ss_pred             CCCCHH---HHHHHHHHhcCCCEE
Confidence            999433   344444444444433

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=94.85  E-value=1.6  Score=42.67  Aligned_cols=163  Identities=16%  Similarity=0.213  Sum_probs=91.2

Q ss_pred             CceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE
Q 014700          185 ENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (420)
Q Consensus       185 ~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~  263 (420)
                      -++++++|-.|+++++|++|+-+|--. ...+++.+.++++++.+|.+... +.+-   .+...+.+ ++..  ++.+.+
T Consensus       127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCT-Ipt~---~ly~~le~-l~R~--DvgIsS  199 (342)
T PRK00961        127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACT-IPTT---KFAKIFKD-LGRD--DLNVTS  199 (342)
T ss_pred             cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEecccc-CCHH---HHHHHHHH-hCcc--cCCeec
Confidence            367888888899999999999999644 67899999999999998865442 4432   23344443 4432  222221


Q ss_pred             C-cccHHHHhhcCCeEEEEe--cCCHHHHHHHHHHHhcCCceEEEc-CChhHHH--HHHHHHHHHHHHHHHHHhcc----
Q 014700          264 G-PSFALELMNKLPTAMVVA--SKDRKLANAVQQLLASKHLRISTS-SDVTGVE--IAGALKNVLAIAAGIVVGMN----  333 (420)
Q Consensus       264 G-P~~a~ev~~g~~t~i~ia--~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e--~~~alkNv~Ai~~G~~~gl~----  333 (420)
                      - |.-.-    +.+....++  -.+++..+++.++.++.+...|.. .|+.+..  +++++--+  ...|+++-..    
T Consensus       200 ~HPaaVP----gt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv--~~aGiL~Y~~~~tq  273 (342)
T PRK00961        200 YHPGAVP----EMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAI--VYAGILAYRDAVTQ  273 (342)
T ss_pred             cCCCCCC----CCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHHHHHHHHHHH
Confidence            1 11110    111111222  236788999999999887766553 3443321  22222111  1123332221    


Q ss_pred             -cch--hHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          334 -LGN--NSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       334 -lg~--N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                       ++-  ...-..+...+.-+..|-+..|++
T Consensus       274 IlgAP~~mie~qa~eaL~tmasLme~~GI~  303 (342)
T PRK00961        274 ILGAPADFAQMMADEALTQITALMREEGID  303 (342)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence             111  112234455667777788888875

>PRK06753 hypothetical protein; Provisional

Probab=94.79  E-value=0.034  Score=56.13  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+|.|||+|..|.++|..|+++|  ++|+++.+++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence            69999999999999999999998  89999998764

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.068  Score=52.71  Aligned_cols=72  Identities=21%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       154 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvI  203 (287)
T PRK14173        154 AGKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLV  203 (287)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999887  7999775321                            15677788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +  -..+++++++||++
T Consensus       204 sAvGkp~~---i--~~~~vk~GavVIDV  226 (287)
T PRK14173        204 VAVGRPHL---I--TPEMVRPGAVVVDV  226 (287)
T ss_pred             EecCCcCc---c--CHHHcCCCCEEEEc
Confidence            99985543   1  14567899999886

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=94.68  E-value=0.25  Score=48.82  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD  201 (420)
                      +..||+|.| .|.+|..+-..|...|  .+ .++..++.+ .+.+                .++.+..+++|+-+.  .|
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~~~~~v----------------~G~~~y~sv~dlp~~~~~D   65 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGKGGTTV----------------LGLPVFDSVKEAVEETGAN   65 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCCCccee----------------cCeeccCCHHHHhhccCCC
Confidence            356999999 5999999999999888  56 555555421 0010                134556677775544  69


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +.++++|...+.+++++.... . -..+|.++.|+..
T Consensus        66 lavi~vpa~~v~~~l~e~~~~-G-vk~avIis~Gf~e  100 (286)
T TIGR01019        66 ASVIFVPAPFAADAIFEAIDA-G-IELIVCITEGIPV  100 (286)
T ss_pred             EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCH
Confidence            999999999999999887652 1 1244446778754

ATP citrate lyases appear to form an outgroup.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.56  E-value=0.082  Score=52.40  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=56.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       157 ~Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvI  206 (297)
T PRK14186        157 AGKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILV  206 (297)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999887  8998874321                            15677788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+.-..+   +.  ..+++++++||++.
T Consensus       207 sAvGkp~~---i~--~~~ik~gavVIDvG  230 (297)
T PRK14186        207 AAAGRPNL---IG--AEMVKPGAVVVDVG  230 (297)
T ss_pred             EccCCcCc---cC--HHHcCCCCEEEEec
Confidence            99985442   11  45678999998873

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.56  E-value=0.082  Score=58.14  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|..|...|..|++.|  ++|+++++.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            3579999999999999999999998  9999998764

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.54  E-value=0.083  Score=51.98  Aligned_cols=72  Identities=24%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       155 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI  204 (282)
T PRK14169        155 AGKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILV  204 (282)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999887  8999774321                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+.-..+   +.  ..+++++++||++
T Consensus       205 ~AvG~p~~---i~--~~~vk~GavVIDv  227 (282)
T PRK14169        205 VAVGVPHF---IG--ADAVKPGAVVIDV  227 (282)
T ss_pred             EccCCcCc---cC--HHHcCCCcEEEEe
Confidence            99985543   11  3567889999886

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.52  E-value=0.027  Score=55.27  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||.|.|+ |.+|..++..|++.|  ++|++++|+++....+...+.  .++     ...+.-..+++++++++|+||.+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~   71 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV   71 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence            58999995 999999999999998  899999998654322221110  000     00011112345567789999876


Q ss_pred             c
Q 014700          207 M  207 (420)
Q Consensus       207 V  207 (420)
                      .
T Consensus        72 a   72 (328)
T TIGR03466        72 A   72 (328)
T ss_pred             c
Confidence            5

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.51  E-value=0.086  Score=51.76  Aligned_cols=72  Identities=22%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++.+..+.||+||
T Consensus       157 ~Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvI  206 (278)
T PRK14172        157 EGKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILV  206 (278)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999887  8999886421                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++.+||++
T Consensus       207 sAvGkp~~---i~--~~~ik~gavVIDv  229 (278)
T PRK14172        207 VAIGRPKF---ID--EEYVKEGAIVIDV  229 (278)
T ss_pred             EcCCCcCc---cC--HHHcCCCcEEEEe
Confidence            99985543   11  3567899999887

>PLN02427 UDP-apiose/xylose synthase

Probab=94.48  E-value=0.07  Score=54.40  Aligned_cols=79  Identities=13%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||.|.|+ |-+|+.++..|.++| +++|++++|+.+....+...+. ....+++.+ ...+.-..+++++++++|+||
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi   91 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKMADLTI   91 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence            579999995 999999999999873 2899999988765544432210 000001110 001111113445677899999


Q ss_pred             Ecc
Q 014700          205 HAM  207 (420)
Q Consensus       205 laV  207 (420)
                      .+.
T Consensus        92 HlA   94 (386)
T PLN02427         92 NLA   94 (386)
T ss_pred             Ecc
Confidence            765

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.45  E-value=0.11  Score=52.41  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus       174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~  209 (338)
T PRK00676        174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL  209 (338)
T ss_pred             CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence            4799999999999999999999883 57999999874

>PRK07877 hypothetical protein; Provisional

Probab=94.43  E-value=0.079  Score=58.68  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCC----------------CCCCC---CCc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF----------------PEQKL---PEN  186 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l----------------~~~~l---~~~  186 (420)
                      ...||+|+|+| +|+..|..|+++|.--+++++|.+.=....+|........+                |...+   +..
T Consensus       106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35799999999 99999999999982027888877642221222210000001                11111   111


Q ss_pred             eEEeCCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       187 i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      +. ..+.++.+.++|+||-|+-....+-++.+..
T Consensus       185 i~-~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a  217 (722)
T PRK07877        185 LT-EDNVDAFLDGLDVVVEECDSLDVKVLLREAA  217 (722)
T ss_pred             CC-HHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence            11 1245666789999999999887777776543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.42  E-value=0.092  Score=51.70  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .|+++..+.||+||
T Consensus       158 ~Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvI  207 (284)
T PRK14177        158 TGKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIV  207 (284)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            468999999 5889999999999887  8999875321                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++++||++
T Consensus       208 sAvGk~~~---i~--~~~ik~gavVIDv  230 (284)
T PRK14177        208 GAVGKPEF---IK--ADWISEGAVLLDA  230 (284)
T ss_pred             EeCCCcCc---cC--HHHcCCCCEEEEe
Confidence            99985543   11  4567899999987

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.42  E-value=0.16  Score=48.22  Aligned_cols=96  Identities=11%  Similarity=-0.036  Sum_probs=58.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH----------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~----------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      .++|+|.|.|++|..+|..|.+.|. ..|.+.|.+.          +.++...+.+.... .+.      .... +.++.
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~-~~~------~~~~-~~~~l   93 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPDGYIYDPGITTEELINYAVALGGSAR-VKV------QDYF-PGEAI   93 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccc-cCc------cccc-Ccccc
Confidence            6899999999999999999999971 3566677777          65555554432111 111      0111 11222


Q ss_pred             -ccCCcEEEEccChhhH-HHHHHHhhhcCCCCCeEEEeccCC
Q 014700          197 -LLGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       197 -l~~aDiVIlaVp~~~l-~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                       -.+||++|-|.....+ .+...++    + -++|+...|+-
T Consensus        94 ~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~p  130 (217)
T cd05211          94 LGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANNP  130 (217)
T ss_pred             eeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCCC
Confidence             1379999999886643 2223332    2 34666667753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.41  E-value=0.1  Score=53.81  Aligned_cols=93  Identities=12%  Similarity=0.099  Sum_probs=55.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCCCCCC----------CCCCceEE------
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA------  189 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~l~~~----------~l~~~i~a------  189 (420)
                      ..||.|||+|.+|+.+|..|+.+|. .+++++|.+.-....+++.-+ ....++..          .+.+.+++      
T Consensus        42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  120 (392)
T PRK07878         42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR  120 (392)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence            5699999999999999999999995 478888876422112221100 00000000          01111111      


Q ss_pred             -e-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       190 -~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                       . .+..+.++++|+||.|+-....+..+.++.
T Consensus       121 i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~  153 (392)
T PRK07878        121 LDPSNAVELFSQYDLILDGTDNFATRYLVNDAA  153 (392)
T ss_pred             CChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence             1 123456788999999988777666666654

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.38  E-value=0.094  Score=51.59  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++..+.||+||
T Consensus       156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvI  205 (282)
T PRK14166        156 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII  205 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            468999999 5789999999999887  8999775421                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+....+   +.  ..+++++++||++.
T Consensus       206 sAvGkp~~---i~--~~~vk~GavVIDvG  229 (282)
T PRK14166        206 VAAGCVNL---LR--SDMVKEGVIVVDVG  229 (282)
T ss_pred             EcCCCcCc---cC--HHHcCCCCEEEEec
Confidence            99985543   11  35678999998873

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.38  E-value=0.22  Score=41.46  Aligned_cols=84  Identities=15%  Similarity=-0.001  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHH-HH
Q 014700          138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL  216 (420)
Q Consensus       138 mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~-vl  216 (420)
                      -+..++..|.+.|  .+|.++|..-....... .+.          ..++...++++++++++|+||++++...... -.
T Consensus        18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEELKERG--AEVSVYDPYVDEEEIKE-LGK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW   84 (106)
T ss_dssp             HHHHHHHHHHHTT---EEEEE-TTSHHHHHHH-HCH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred             HHHHHHHHHHHCC--CEEEEECCccChHHHHh-hCC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence            3466889999998  89999998654322222 110          0135677789999999999999999766554 34


Q ss_pred             HHhhhcCCCCCeEEEecc
Q 014700          217 EGISDYVDPGLPFISLSK  234 (420)
Q Consensus       217 ~~i~~~l~~~~iVVs~sn  234 (420)
                      +.+...+.+..+|+.+-+
T Consensus        85 ~~~~~~~~~~~~iiD~~~  102 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDGRN  102 (106)
T ss_dssp             HHHHHHSCSSEEEEESSS
T ss_pred             HHHHHhcCCCCEEEECcc
Confidence            566666666778887654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.38  E-value=0.19  Score=47.95  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r----------~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      .++|+|.|.|++|..++..|.+.|  ..|+ +.|.          +.+.+.++.+.......+++     . ... +.++
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~-----~-~~~-~~~~  101 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG-----A-ERI-TNEE  101 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC-----c-eec-CCcc
Confidence            689999999999999999999988  7888 5565          55555555443222111111     1 111 1222


Q ss_pred             h-ccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       196 a-l~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      . -.+||+++-|.+... ..+.+.++.     -++|+-..|+-
T Consensus       102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~  139 (227)
T cd01076         102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAANGP  139 (227)
T ss_pred             ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCCC
Confidence            2 237999999987654 334444432     34666666653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK05868 hypothetical protein; Validated

Probab=94.37  E-value=0.045  Score=55.73  Aligned_cols=35  Identities=34%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |++|.|||+|..|.++|..|++.|  ++|+++++.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence            579999999999999999999998  89999997753

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.37  E-value=0.15  Score=54.67  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+++.|+|+|.+|.+++..|++.|  .+|++++|+.++.+.+.+.
T Consensus       379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~  421 (529)
T PLN02520        379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA  421 (529)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence            468999999999999999999998  7999999998888777653

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=94.36  E-value=0.056  Score=55.42  Aligned_cols=46  Identities=33%  Similarity=0.595  Sum_probs=35.4

Q ss_pred             ccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 014700          111 WSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP  162 (420)
Q Consensus       111 ~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~a-G~~~-~V~l~~r~~  162 (420)
                      |++.|+..+    ....-.|.|||+|.+|.++|..|++. |  . +|+++++..
T Consensus        18 ~~~~~~~~~----~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~   65 (407)
T TIGR01373        18 WKPAWRSPE----PKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW   65 (407)
T ss_pred             CCcccCCCC----CCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence            776555543    12234799999999999999999985 6  4 899999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.35  E-value=0.098  Score=51.46  Aligned_cols=72  Identities=25%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .|+.+..+.||+||
T Consensus       157 ~Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvI  206 (282)
T PRK14180        157 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI  206 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEE
Confidence            368999999 5789999999999887  8999875321                            15666688999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++++||++
T Consensus       207 sAvGkp~~---i~--~~~vk~gavVIDv  229 (282)
T PRK14180        207 VAVGKPNF---IT--ADMVKEGAVVIDV  229 (282)
T ss_pred             EccCCcCc---CC--HHHcCCCcEEEEe
Confidence            99985543   11  3567889999886

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.31  E-value=0.097  Score=51.52  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=55.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       156 ~Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI  205 (284)
T PRK14170        156 EGKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILV  205 (284)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5778999999999887  8999874321                            25677789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++++||++
T Consensus       206 ~AvG~~~~---i~--~~~vk~GavVIDv  228 (284)
T PRK14170        206 VATGLAKF---VK--KDYIKPGAIVIDV  228 (284)
T ss_pred             EecCCcCc---cC--HHHcCCCCEEEEc
Confidence            99985543   11  3567889999886

>PRK08374 homoserine dehydrogenase; Provisional

Probab=94.26  E-value=0.082  Score=53.42  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHHhcCCCCCCCCCCCCCceEE-
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINEKHCNCRYFPEQKLPENVIA-  189 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~--------aG~~~~V~-l~~r~~~~-------~~~i~~~g~~~~~l~~~~l~~~i~a-  189 (420)
                      .++|+|+|.|++|..++..|.+        .|.+..|. +.+++...       ..++.+.......+..  ++..... 
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~--~~~~~~~~   79 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSN--WGNDYEVY   79 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhh--cccccccc
Confidence            4799999999999999999887        34223444 33443211       1111110000000000  1000000 


Q ss_pred             eCCHHHhc--cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          190 TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       190 ~td~~eal--~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ..++++.+  .++|+||-++......++..+   .+..+..||...||..
T Consensus        80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~l  126 (336)
T PRK08374         80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPPI  126 (336)
T ss_pred             CCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHHH
Confidence            11566665  479999999987655555444   3456788888888743

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.26  E-value=0.11  Score=51.53  Aligned_cols=73  Identities=19%  Similarity=0.360  Sum_probs=56.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       166 ~Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv  215 (299)
T PLN02516        166 KGKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVI  215 (299)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5788999999999887  8999884321                            15677789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+....+   +.  ..+++++++||++.
T Consensus       216 ~AvGk~~~---i~--~~~vk~gavVIDvG  239 (299)
T PLN02516        216 AAAGQAMM---IK--GDWIKPGAAVIDVG  239 (299)
T ss_pred             EcCCCcCc---cC--HHHcCCCCEEEEee
Confidence            99975421   11  45678999998863

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.23  E-value=0.11  Score=55.99  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..++|+|||+|..|.+.|..|++.|  ++|+++++.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            4679999999999999999999998  899999853

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=94.19  E-value=0.37  Score=42.21  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=72.5

Q ss_pred             hhcCCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       123 ~~~~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      ...+.++|+++|+    ..-+...+..|.++|  ++|+-++....- +.+..                .++..+++|.-+
T Consensus        12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiLG----------------~k~y~sL~dIpe   72 (140)
T COG1832          12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEILG----------------EKVYPSLADIPE   72 (140)
T ss_pred             HHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhcC----------------chhhhcHHhCCC
Confidence            3455689999998    568889999999999  999988774321 22221                234457888667


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ..|+|-+..++..+.+++++....   +.-++-+|-|+.+++
T Consensus        73 ~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e  111 (140)
T COG1832          73 PIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE  111 (140)
T ss_pred             CCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence            889999999999999999887653   466788899998753

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.17  E-value=0.13  Score=53.96  Aligned_cols=65  Identities=22%  Similarity=0.194  Sum_probs=44.8

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++|.|||+|..|.+ +|..|.+.|  ++|+++|.+.. ..+.+.+.|...            ....+. +.+.++|+||
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~vv   71 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVVV   71 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEEE
Confidence            468999999999999 799999998  99999997542 233444433211            001123 3466789988


Q ss_pred             Ec
Q 014700          205 HA  206 (420)
Q Consensus       205 la  206 (420)
                      ++
T Consensus        72 ~s   73 (461)
T PRK00421         72 YS   73 (461)
T ss_pred             EC
Confidence            75

>PRK07236 hypothetical protein; Provisional

Probab=94.16  E-value=0.061  Score=54.80  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|+++|  ++|+++++.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            479999999999999999999998  8999999875

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.16  E-value=0.06  Score=52.97  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=28.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|.|||+|.-|.++|..|+++|  ++|+++++.+
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcc--cccccchhcc
Confidence            47999999999999999999999  9999999875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.14  E-value=0.12  Score=50.93  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      .++|.|.| +|-+|+.++..|.+.|  ++|++++|+.+.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~   40 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND   40 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence            36899999 5999999999999998  999999887643

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=94.12  E-value=0.43  Score=46.88  Aligned_cols=101  Identities=11%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a----G~~-----~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~t  191 (420)
                      ..||.|+|+|+-|..+|..|...    |..     .+++++|+.-      ..+...+..-..     .  ...  ....
T Consensus        25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~   95 (279)
T cd05312          25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK   95 (279)
T ss_pred             hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence            36999999999999999999886    631     3788888652      001111111000     0  000  1124


Q ss_pred             CHHHhcc--CCcEEEEcc--ChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          192 DAKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       192 d~~eal~--~aDiVIlaV--p~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++.|+++  ++|++|=+.  +.-..+++++.+..+. +..+|..++|-..
T Consensus        96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~  144 (279)
T cd05312          96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTS  144 (279)
T ss_pred             CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC-CCCEEEECCCcCC
Confidence            8999999  889998655  4566888888887765 4668888898654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.11  E-value=0.12  Score=51.25  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=56.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       159 ~Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvV  208 (294)
T PRK14187        159 SGSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILV  208 (294)
T ss_pred             CCCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999887  8999875421                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++++||++
T Consensus       209 sAvGkp~~---i~--~~~ik~gaiVIDV  231 (294)
T PRK14187        209 AAVGIPNF---VK--YSWIKKGAIVIDV  231 (294)
T ss_pred             EccCCcCc---cC--HHHcCCCCEEEEe
Confidence            99985543   11  3567789999886

>PRK07411 hypothetical protein; Validated

Probab=94.11  E-value=0.17  Score=52.27  Aligned_cols=94  Identities=11%  Similarity=0.123  Sum_probs=56.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCC----------------CCCCCCCC-ce
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRY----------------FPEQKLPE-NV  187 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~----------------l~~~~l~~-~i  187 (420)
                      ...||.|||+|.+|+.++..|+.+|. .+++++|.+.-....++++-+ ....                .|...+.. ..
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            35699999999999999999999996 588888876322212221100 0000                11111100 00


Q ss_pred             EEe-CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          188 IAT-TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       188 ~a~-td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      ..+ .+..+.+.++|+||.|+-....+.++.++.
T Consensus       116 ~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~  149 (390)
T PRK07411        116 RLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC  149 (390)
T ss_pred             ccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence            111 123455789999999998777777676654

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=2  Score=41.04  Aligned_cols=93  Identities=17%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..|.+++||.|..|.+...+....+  +... +..|++++++.+.+.-.         .| ..    |.+...+-.+++|
T Consensus         9 ~~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a~-p~----d~~~~ael~~~vf   72 (289)
T COG5495           9 ARVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------AP-PL----DVAKSAELLLLVF   72 (289)
T ss_pred             eeeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------CC-cc----chhhChhhhceEE
Confidence            3579999999999998554444333  2222 23577777766555311         01 11    2222223357888


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      .-+|...+..+.....  ..++++++.++ |..
T Consensus        73 v~vpd~~~s~vaa~~~--~rpg~iv~HcS-ga~  102 (289)
T COG5495          73 VDVPDALYSGVAATSL--NRPGTIVAHCS-GAN  102 (289)
T ss_pred             ecchHHHHHHHHHhcc--cCCCeEEEEcc-CCC
Confidence            8899875544443322  34789999887 443

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.07  E-value=0.15  Score=48.89  Aligned_cols=92  Identities=16%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC----------------CCCCCCCC---CCceE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC----------------RYFPEQKL---PENVI  188 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~----------------~~l~~~~l---~~~i~  188 (420)
                      ||.|||+|.+|+.++..|+..|. .+++++|.+.-....++++-+ ..                +..|+..+   ...+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            68999999999999999999986 578888876422222221100 00                00111111   01110


Q ss_pred             EeCC-HHHhccCCcEEEEccChhhHHHHHHHhhh
Q 014700          189 ATTD-AKTALLGADYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       189 a~td-~~eal~~aDiVIlaVp~~~l~~vl~~i~~  221 (420)
                      -..+ .++.+++.|+||.|+-....+..+.+..-
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~  113 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLI  113 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence            0011 23457789999999887776666666543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.07  E-value=0.69  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|+|+|.+|+.+|..|+.+|. ..|+++|.+.
T Consensus        19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~   53 (286)
T cd01491          19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP   53 (286)
T ss_pred             cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence            4689999999999999999999995 5899998664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=94.07  E-value=2.8  Score=41.16  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             CceEEeCCHHHhccCCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE
Q 014700          185 ENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (420)
Q Consensus       185 ~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~  263 (420)
                      -++++++|-.|+++++|++|+-+|--. ...+++.+.++++++.+|.+... +.+-   .+...+.. ++..  ++.+.+
T Consensus       125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCT-Ipt~---~ly~ilE~-l~R~--DvgVsS  197 (340)
T TIGR01723       125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACT-IPTT---KFAKIFED-LGRE--DLNVTS  197 (340)
T ss_pred             cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEecccc-CChH---HHHHHHHh-hCcc--cCCeec
Confidence            367888888899999999999999644 67899999999999998865442 4432   23334433 3432  222221


Q ss_pred             C-cccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEc-CChhHH--HHHHHHHHHHHHHHHHHHhcc-----c
Q 014700          264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS-SDVTGV--EIAGALKNVLAIAAGIVVGMN-----L  334 (420)
Q Consensus       264 G-P~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~--e~~~alkNv~Ai~~G~~~gl~-----l  334 (420)
                      - |.-.-+. .++ ..+.-+-.+++..+++.++.++.+...+.. .|+.+.  .+++++--+  ..+|+++-..     +
T Consensus       198 ~HPaaVPgt-~~q-~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv--~~aGiL~Y~~~~t~Il  273 (340)
T TIGR01723       198 YHPGCVPEM-KGQ-VYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAI--VYAGLLAYRDAVTKIL  273 (340)
T ss_pred             cCCCCCCCC-CCc-eEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence            1 1111110 011 111112246788999999999887666553 344332  122222111  1123332221     1


Q ss_pred             ch--hHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          335 GN--NSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       335 g~--N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      +-  ...-..+...+.-+..|-+..|++
T Consensus       274 gAP~~miq~qa~eaL~tmasLme~~GI~  301 (340)
T TIGR01723       274 GAPADFAQMMADEALTQIHNLMEEKGID  301 (340)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            11  112233455667777777888875

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK09242 tropinone reductase; Provisional

Probab=94.05  E-value=0.57  Score=44.46  Aligned_cols=42  Identities=17%  Similarity=0.286  Sum_probs=35.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~   51 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD   51 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 899999999999998  899999999877665544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.04  E-value=0.08  Score=40.56  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=26.9

Q ss_pred             EEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       132 IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |||+|.-|.+.|..|+++|  ++|+++++.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCC--CcEEEEecCcc
Confidence            8999999999999999998  99999998763

...

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.03  E-value=0.13  Score=50.60  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI  205 (282)
T PRK14182        156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV  205 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            478999999 5789999999999887  7999874321                            25667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+.-..+   +.  ..+++++++||++
T Consensus       206 ~AvGk~~~---i~--~~~ik~gaiVIDv  228 (282)
T PRK14182        206 AAIGKAEL---VK--GAWVKEGAVVIDV  228 (282)
T ss_pred             EecCCcCc---cC--HHHcCCCCEEEEe
Confidence            99985432   11  4567899999886

>PRK09186 flagellin modification protein A; Provisional

Probab=94.00  E-value=0.5  Score=44.59  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~   46 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE   46 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence            3578999996 899999999999998  899999999876655543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.99  E-value=0.12  Score=59.13  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|.-|.+.|..|++.|  |+|+++++.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~  339 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH  339 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence            4689999999999999999999999  9999998763

>PLN02214 cinnamoyl-CoA reductase

Probab=93.99  E-value=0.12  Score=51.84  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=47.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEKHCNCRYFPEQKL-PENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~--i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDi  202 (420)
                      +|+|.|.|+ |.+|+.++..|.++|  ++|++.+|+.+....  +.+....   .+.+.+ ...+.-..+.+++++++|+
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGG---KERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCC---CCcEEEEecCcCChHHHHHHHhcCCE
Confidence            578999997 999999999999998  999999987653211  1111000   000000 0011111245566788999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      ||.+..
T Consensus        85 Vih~A~   90 (342)
T PLN02214         85 VFHTAS   90 (342)
T ss_pred             EEEecC
Confidence            998763

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.98  E-value=0.11  Score=55.92  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..++|.|.|+ |.+|.+++..|++.|  ++|++++|+.+..+.+.+
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence            3468999996 999999999999998  999999999887665543

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=93.98  E-value=0.051  Score=46.35  Aligned_cols=65  Identities=25%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc--ccch--hhh-hhc-ccCCCCcccccccc
Q 014700          328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGD--IML-TCF-VNLSRNRTVGVRLG  392 (420)
Q Consensus       328 ~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~--g~gd--l~~-t~~-~~~sRn~~~G~~l~  392 (420)
                      ....+|+.+|........++.|+..++++.|++++++++..  +.|.  .+. ... ....+++..+|.+.
T Consensus         2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~   72 (122)
T PF14833_consen    2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLD   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhH
Confidence            34556788899999999999999999999999999999842  3322  111 122 24578888888653

...

>PRK07588 hypothetical protein; Provisional

Probab=93.98  E-value=0.061  Score=54.81  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+|.|||+|..|.++|..|++.|  ++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence            58999999999999999999998  89999987653

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.48  Score=44.44  Aligned_cols=43  Identities=14%  Similarity=0.282  Sum_probs=36.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++++.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   48 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALAA   48 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            3568999996 999999999999998  899999999876555443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.96  E-value=0.19  Score=52.25  Aligned_cols=34  Identities=29%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|+|+|.+|.++|..|++.|  ++|+++|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence            468999999999999999999999  8999999764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.95  E-value=0.13  Score=54.08  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|+|||+|.-|.+.|..|+++|  |+|+++.+.+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~  156 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVA  156 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcC
Confidence            489999999999999999999999  9999998765

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.94  E-value=0.18  Score=53.47  Aligned_cols=68  Identities=21%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++|.|+|.|..|.++|..|.+.|  ++|+++|....  ..+.+.+.+....          +..-....+.+.++|+||
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv   74 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA   74 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence            468999999999999999999998  89999996542  2234444321111          111111223456789999


Q ss_pred             Ec
Q 014700          205 HA  206 (420)
Q Consensus       205 la  206 (420)
                      ..
T Consensus        75 ~s   76 (498)
T PRK02006         75 LS   76 (498)
T ss_pred             EC
Confidence            86

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.94  E-value=0.12  Score=52.22  Aligned_cols=72  Identities=18%  Similarity=0.260  Sum_probs=55.9

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|..+|..|.+.+  ..|+++....                            .++++..+.||+||
T Consensus       213 ~GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvI  262 (345)
T PLN02897        213 AGKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVI  262 (345)
T ss_pred             CCCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEE
Confidence            478999999 5788999999999887  7998875321                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+.-..+   +.  ..+++++++||++
T Consensus       263 sAvGkp~~---v~--~d~vk~GavVIDV  285 (345)
T PLN02897        263 AAAGIPNL---VR--GSWLKPGAVVIDV  285 (345)
T ss_pred             EccCCcCc---cC--HHHcCCCCEEEEc
Confidence            99985543   11  4567899999886

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.94  E-value=0.47  Score=44.17  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=35.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+.
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~   46 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEALA   46 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHHH
Confidence            468999996 999999999999998  89999999987655443

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.93  E-value=0.48  Score=44.64  Aligned_cols=41  Identities=17%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|.+++|+++..+.+.
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~   45 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAA   45 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence            468999994 999999999999998  89999999987665544

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.93  E-value=0.19  Score=52.69  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g  172 (420)
                      .+||.|||.|..|.+.|..|.+.|  ++|+++|+.+.....+.+.|
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g   52 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG   52 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence            468999999999999999999998  89999997754433444433

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.93  E-value=0.1  Score=55.31  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHH--------------HHHHHHhcCCCCCCCCCCCCCceEEe
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAV--------------CQSINEKHCNCRYFPEQKLPENVIAT  190 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~--------------~~~i~~~g~~~~~l~~~~l~~~i~a~  190 (420)
                      ..+||+|||+|.-|.+.|..|+ +.|  ++|++|++.+..              .+.+.+.-......+++.+..++.+-
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG  115 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG  115 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence            4579999999999999999775 456  999999987531              11110000000000111222234433


Q ss_pred             C--CHHHhccCCcEEEEccChhh
Q 014700          191 T--DAKTALLGADYCLHAMPVQF  211 (420)
Q Consensus       191 t--d~~eal~~aDiVIlaVp~~~  211 (420)
                      .  +.++.....|.||+++-...
T Consensus       116 ~Dvt~eeL~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        116 VDLKMEELRNHYNCVIFCCGASE  138 (506)
T ss_pred             CccCHHHHHhcCCEEEEEcCCCC
Confidence            3  36676678999999987553

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.93  E-value=0.56  Score=44.35  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+|.|+|+ |.+|.+++..|++.|  ++|.+.+|+++.++.+..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   42 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELKD   42 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            68999995 999999999999998  899999999876665543

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.13  Score=50.70  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=55.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~--aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..++|+||| .+.+|.++|..|.+  .+  ..|+++....                            .++++.++.||+
T Consensus       157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADI  206 (284)
T PRK14193        157 AGAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADI  206 (284)
T ss_pred             CCCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCE
Confidence            368999999 57899999999997  45  7888875421                            156777899999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ||.|+....+   +.  ..+++++++||++
T Consensus       207 vV~AvGkp~~---i~--~~~ik~GavVIDv  231 (284)
T PRK14193        207 IVAAAGVAHL---VT--ADMVKPGAAVLDV  231 (284)
T ss_pred             EEEecCCcCc---cC--HHHcCCCCEEEEc
Confidence            9999985542   11  4567899999886

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.14  Score=50.54  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=55.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++..+.||+||
T Consensus       158 ~GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV  207 (288)
T PRK14171        158 TGKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVV  207 (288)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            468999999 5788999999999887  8999775321                            15677788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+.-..+   +.  ..+++++++||++
T Consensus       208 ~AvGkp~~---i~--~~~vk~GavVIDv  230 (288)
T PRK14171        208 AAIGSPLK---LT--AEYFNPESIVIDV  230 (288)
T ss_pred             EccCCCCc---cC--HHHcCCCCEEEEe
Confidence            99984432   11  3567899999886

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.88  E-value=0.12  Score=52.51  Aligned_cols=72  Identities=17%  Similarity=0.294  Sum_probs=56.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||
T Consensus       230 ~GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVI  279 (364)
T PLN02616        230 KGKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIII  279 (364)
T ss_pred             CCCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            468999999 6889999999999987  8999874321                            15677789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+....+   +.  ..+++++++||++
T Consensus       280 sAvGkp~~---i~--~d~vK~GAvVIDV  302 (364)
T PLN02616        280 SAVGQPNM---VR--GSWIKPGAVVIDV  302 (364)
T ss_pred             EcCCCcCc---CC--HHHcCCCCEEEec
Confidence            99985543   11  4567899999886

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.85  E-value=0.25  Score=47.96  Aligned_cols=102  Identities=12%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHHhcCCCCCCCCCCCCCceEEeC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a----G~~-----~~V~l~~r~~------~~~~~i~~~g~~~~~l~~~~l~~~i~a~t  191 (420)
                      ..||.|+|+|+-|..+|..|.+.    |..     .+++++|+.-      +.+...++......        .......
T Consensus        25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~--------~~~~~~~   96 (255)
T PF03949_consen   25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT--------NPEKDWG   96 (255)
T ss_dssp             G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS--------STTT--S
T ss_pred             HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC--------ccccccc
Confidence            46999999999999999999988    842     4788888761      11111111100000        0011124


Q ss_pred             CHHHhccCC--cEEEEc--cChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          192 DAKTALLGA--DYCLHA--MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       192 d~~eal~~a--DiVIla--Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++.|+++++  |++|=+  ++.-..+++++.+.++.+ ..+|..++|-..
T Consensus        97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~  145 (255)
T PF03949_consen   97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP  145 (255)
T ss_dssp             SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred             CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence            889999988  999865  456678999999888653 567778888654

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=93.84  E-value=0.08  Score=53.45  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+++|+|||+|.+|.+.|..|++.|  ++|+++++.+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE   37 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence            3679999999999999999999999  7999998765

>PRK07538 hypothetical protein; Provisional

Probab=93.84  E-value=0.068  Score=55.06  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+|.|||+|..|.++|..|+++|  ++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence            68999999999999999999998  89999998753

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.83  E-value=0.13  Score=51.38  Aligned_cols=91  Identities=14%  Similarity=0.204  Sum_probs=53.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCC----------------CCCCCCC---CCceE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCR----------------YFPEQKL---PENVI  188 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~----------------~l~~~~l---~~~i~  188 (420)
                      ||.|||+|.+|+.++..|+..|. .+++++|.+.-....++++-. ...                ..|...+   ...+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            68999999999999999999996 588898876422222221100 000                0011111   01111


Q ss_pred             EeCCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       189 a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      -.....+.+++.|+||.|+-....+..+.++.
T Consensus        80 ~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c  111 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMC  111 (312)
T ss_pred             CccchHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence            00112355789999999998766666665553

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=93.83  E-value=0.51  Score=44.93  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   42 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK   42 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            68999996 889999999999998  899999999876655443

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.81  E-value=0.12  Score=51.85  Aligned_cols=41  Identities=15%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             cchhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          120 KTDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ++.+...+|||.|.|+ |-+|+.++..|.+.|  ++|++++|..
T Consensus         8 ~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~   49 (348)
T PRK15181          8 RTKLVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS   49 (348)
T ss_pred             hhcccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence            3444555689999996 999999999999998  8999999854

>PLN03075 nicotianamine synthase; Provisional

Probab=93.80  E-value=0.64  Score=46.15  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHh---ccCCc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~ea---l~~aD  201 (420)
                      ...+|..||.|..|..-...++....+..++.+|.+++.++..++.-..     ...+..++++. .|..+.   ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence            4579999999998876555554432224799999999876655542100     01112223322 232221   36789


Q ss_pred             EEEEccC----hhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       202 iVIlaVp----~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +|++.+=    ...-+.+++.+.+++++|.+++.-
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            9999852    145678899999999998877643

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.76  E-value=0.067  Score=55.00  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      +..+|||.|+|+ |.+|..++..|.+.|  ++|++++|+...
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence            345689999996 999999999999998  999999998753

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.69  E-value=0.15  Score=50.21  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=55.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..++|+||| ...+|.++|..|.+.|.  +..|+++...                            +.++++.++.||+
T Consensus       152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADI  203 (287)
T PRK14181        152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ----------------------------SENLTEILKTADI  203 (287)
T ss_pred             CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence            368999999 57889999999998720  1688876431                            1256777899999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ||.|+....+   +.  ..+++++++||++
T Consensus       204 vV~AvG~p~~---i~--~~~ik~GavVIDv  228 (287)
T PRK14181        204 IIAAIGVPLF---IK--EEMIAEKAVIVDV  228 (287)
T ss_pred             EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence            9999985542   11  4567899999887

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.69  E-value=0.52  Score=43.96  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++|.|+|+ |.+|..++..|++.|  ++|.+.+|+++..+.+.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~   48 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA   48 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence            68999996 999999999999988  899999999876655543

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.67  E-value=0.1  Score=51.45  Aligned_cols=31  Identities=32%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .|+|||+|..|.+.|..|++.|  ++|+++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence            4899999999999999999998  999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=93.66  E-value=0.23  Score=49.16  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ||.|||+|.+|+.++..|+..|. .+++++|.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gv-g~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGF-RNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence            68999999999999999999996 478887755

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=93.63  E-value=0.065  Score=52.02  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      +|.|+|+ |.+|..++..|.+.|  ++|++..|+++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~   35 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS   35 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence            5889997 999999999999998  999999998764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.57  E-value=0.08  Score=54.25  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...++|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~   51 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQP   51 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCC
Confidence            33578999999999999999999998  9999999765

>PRK06182 short chain dehydrogenase; Validated

Probab=93.55  E-value=0.16  Score=48.84  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++.++.+..
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~~   45 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLAS   45 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh
Confidence            468999996 999999999999998  999999999887666544

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.54  E-value=0.55  Score=47.96  Aligned_cols=93  Identities=12%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La-~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |||+|||+ |.+|..|-..|. +..+. .++.++.....       .|... .+.+..+  .+...++. +...+.|++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s-------~g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf   69 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL-------GQAAP-SFGGTTG--TLQDAFDI-DALKALDIII   69 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh-------CCCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence            58999997 999999999998 54432 24445543321       11111 1112111  22222222 2467899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~--~iVVs~sn  234 (420)
                      +|.+....+++...+..   .|  .+||+.+.
T Consensus        70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS   98 (366)
T TIGR01745        70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS   98 (366)
T ss_pred             EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence            99998877766665543   46  56777664

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=93.50  E-value=0.092  Score=53.72  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .++|.|||+|..|.++|..|+++|  ++|+++++.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence            568999999999999999999999  999999987

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.47  E-value=0.091  Score=53.56  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence            468999999999999999999998  8999999864

>PLN02650 dihydroflavonol-4-reductase

Probab=93.46  E-value=0.19  Score=50.40  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++|.|.|+ |-+|+.++..|++.|  ++|++++|+.+..+.+..........+.+.+ ...+.-....+++++++|.||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            568999996 999999999999998  8999998886554433221000000000000 001111123456677899998


Q ss_pred             Ecc
Q 014700          205 HAM  207 (420)
Q Consensus       205 laV  207 (420)
                      .+.
T Consensus        83 H~A   85 (351)
T PLN02650         83 HVA   85 (351)
T ss_pred             EeC
Confidence            764

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.46  E-value=0.19  Score=49.54  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~----aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      ..++|+||| ...+|.++|..|.+    .+  ..|+.+....                            .++++.++.|
T Consensus       156 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t----------------------------~~l~~~~~~A  205 (286)
T PRK14184        156 AGKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRT----------------------------PDLAEECREA  205 (286)
T ss_pred             CCCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCc----------------------------hhHHHHHHhC
Confidence            468999999 57899999999998    44  6888776432                            1566778899


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+||.|+....+   +.  ..+++++++||++.
T Consensus       206 DIVI~AvG~p~l---i~--~~~vk~GavVIDVG  233 (286)
T PRK14184        206 DFLFVAIGRPRF---VT--ADMVKPGAVVVDVG  233 (286)
T ss_pred             CEEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence            999999976543   11  34567899998863

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.43  E-value=0.21  Score=49.48  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=54.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~----aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      ..++|+||| ...+|.++|..|.+    .+  ..|+.......                            ++++.++.|
T Consensus       158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t~----------------------------~l~~~~~~A  207 (295)
T PRK14174        158 KGKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSATK----------------------------DIPSYTRQA  207 (295)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCch----------------------------hHHHHHHhC
Confidence            368999999 57899999999987    45  68887764321                            456778899


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+||.|+....+   +.  ..+++++.+||++.
T Consensus       208 DIvI~Avg~~~l---i~--~~~vk~GavVIDVg  235 (295)
T PRK14174        208 DILIAAIGKARF---IT--ADMVKPGAVVIDVG  235 (295)
T ss_pred             CEEEEecCccCc---cC--HHHcCCCCEEEEee
Confidence            999999975432   11  34568899998874

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.43  E-value=0.22  Score=49.63  Aligned_cols=45  Identities=20%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKH  172 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g  172 (420)
                      ..++|+|+|+|-+|+ ||..++++ .+++|+++++.. ++-+.++..|
T Consensus       181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LG  226 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLG  226 (360)
T ss_pred             CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcC
Confidence            568999999999886 77777777 349999999986 3444444433

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=93.42  E-value=0.45  Score=46.14  Aligned_cols=101  Identities=13%  Similarity=0.148  Sum_probs=64.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCC---------CeEEEEeCCHH------HHHHHHHhcCCCCCCCCCCCCCceEEeCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQ---------LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATTD  192 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~---------~~V~l~~r~~~------~~~~i~~~g~~~~~l~~~~l~~~i~a~td  192 (420)
                      .||.|+|+|+-|..+|..|...+..         .+++++|+.--      .....++.-  .+|...      -....+
T Consensus        26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~--~~~~~~------~~~~~~   97 (254)
T cd00762          26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHL--ARFANP------ERESGD   97 (254)
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHH--HHHcCc------ccccCC
Confidence            6999999999999999999886521         16777776520      011111100  000000      011248


Q ss_pred             HHHhcc--CCcEEEEcc--ChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          193 AKTALL--GADYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       193 ~~eal~--~aDiVIlaV--p~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +.|+++  ++|++|=..  |.-..+++++.+..+. +..+|..++|-..
T Consensus        98 L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~-~~PIIFaLSNPt~  145 (254)
T cd00762          98 LEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEIN-ERPVIFALSNPTS  145 (254)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcC-CCCEEEECCCcCC
Confidence            999999  899998533  4556888888887764 4567888888654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.40  E-value=0.099  Score=53.07  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhc---CCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~a---G~~~~V~l~~r~  161 (420)
                      .+++|.|||+|..|.++|..|++.   |  ++|+++++.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence            356899999999999999999997   8  999999984

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.38  E-value=0.68  Score=43.37  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|.+.+|+++..+.+.
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA   48 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            478999996 999999999999998  89999999987665544

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.37  E-value=0.67  Score=45.46  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+.+..+.+.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            368999996 999999999999998  999999999877666544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.36  E-value=0.095  Score=53.24  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=30.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|.|||+|..|.++|..|+++|  ++|+++++.+
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence            47999999999999999999998  8999999864

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.34  E-value=0.091  Score=54.08  Aligned_cols=35  Identities=31%  Similarity=0.581  Sum_probs=30.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |||.|||+|.-|.++|..|+++|+ .+|+++++.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~-~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSH-LNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEecCCc
Confidence            689999999999999999999871 49999998754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK05993 short chain dehydrogenase; Provisional

Probab=93.34  E-value=0.21  Score=48.29  Aligned_cols=42  Identities=12%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      +++|.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~   46 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA   46 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467999997 999999999999998  899999999887776654

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.30  E-value=0.76  Score=43.09  Aligned_cols=42  Identities=17%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|+|+ |.+|..++..|++.|  ++|++.+|+++..+.+..
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~   47 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEG--ARVVVTDRNEEAAERVAA   47 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 999999999999998  899999999876655443

>PRK01581 speE spermidine synthase; Validated

Probab=93.29  E-value=2.7  Score=43.05  Aligned_cols=105  Identities=20%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEE-eCCHHHhc----cC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIA-TTDAKTAL----LG  199 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a-~td~~eal----~~  199 (420)
                      +..+|.|||+|. |.++...| +.....+|++++.+++.++..++. .....+....+ .+++++ ..|..+.+    ..
T Consensus       150 ~PkrVLIIGgGd-G~tlrelL-k~~~v~~It~VEIDpeVIelAr~~-~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        150 DPKRVLILGGGD-GLALREVL-KYETVLHVDLVDLDGSMINMARNV-PELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCEEEEECCCH-HHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhc-cccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            457999999884 44444444 432125899999999877666541 11000111111 224443 34444332    34


Q ss_pred             CcEEEEccChh--------hHHHHHHHhhhcCCCCCeEEEec
Q 014700          200 ADYCLHAMPVQ--------FSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       200 aDiVIlaVp~~--------~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .|+||+-.+..        ...++++.+...|+++.+++.-.
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            69999987642        24678888999999998876543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.24  E-value=0.26  Score=51.94  Aligned_cols=35  Identities=34%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..++|+|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~  176 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD  176 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence            3579999999999999999999998  8999998754

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.23  E-value=0.72  Score=43.33  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=35.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~   47 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA   47 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            468999997 999999999999998  89999999876555443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.22  E-value=0.11  Score=53.07  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence            58999999999999999999998  9999999653

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.18  E-value=0.11  Score=52.29  Aligned_cols=33  Identities=36%  Similarity=0.423  Sum_probs=30.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..|.|||+|.+|.++|..|++.|  ++|+++++..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence            36999999999999999999998  8999999864

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.16  E-value=0.91  Score=43.54  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|.+++|+++..+.+.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   48 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA   48 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence            479999996 899999999999998  89999999987655444

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.15  E-value=0.1  Score=54.94  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=32.6

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ...++|+|||+|.-|.+.|..|.+.|  ++|+++.+++.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~   44 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ   44 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence            34579999999999999999999998  89999988653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.14  E-value=0.25  Score=56.60  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|.-|.+.|..|++.|  ++|+++++.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence            4679999999999999999999998  9999998753

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=93.07  E-value=0.23  Score=50.22  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=64.9

Q ss_pred             cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      .++++...+++.|.|.|-.|.-+|.+|...|  .+|.++..+|-.  .+...-      .      +.++. ..+++.+.
T Consensus       202 aTn~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~--AleA~M------d------Gf~V~-~m~~Aa~~  264 (420)
T COG0499         202 ATNVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIR--ALEAAM------D------GFRVM-TMEEAAKT  264 (420)
T ss_pred             hhceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchH--HHHHhh------c------CcEEE-EhHHhhhc
Confidence            3577888899999999999999999999888  899999998744  332210      1      12333 35778889


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      +|++|.++-...+-. .+. ...++++.++.+
T Consensus       265 gDifiT~TGnkdVi~-~eh-~~~MkDgaIl~N  294 (420)
T COG0499         265 GDIFVTATGNKDVIR-KEH-FEKMKDGAILAN  294 (420)
T ss_pred             CCEEEEccCCcCccC-HHH-HHhccCCeEEec
Confidence            999999998655321 122 233566666544

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.07  E-value=0.79  Score=45.89  Aligned_cols=90  Identities=19%  Similarity=0.194  Sum_probs=55.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..+|.|+|+|.+|...+..+++ .| ..+|++.++++++.+.+++.+..  +           ...+..+. ..+|+||=
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~~--~-----------~~~~~~~~-~g~d~viD  228 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADET--Y-----------LIDDIPED-LAVDHAFE  228 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCce--e-----------ehhhhhhc-cCCcEEEE
Confidence            4689999999999988877765 33 25799999998877766542210  0           01112221 25899999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      ++........++.....++++..++.
T Consensus       229 ~~G~~~~~~~~~~~~~~l~~~G~iv~  254 (341)
T cd08237         229 CVGGRGSQSAINQIIDYIRPQGTIGL  254 (341)
T ss_pred             CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence            98743223334444455555554443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.06  E-value=0.24  Score=49.11  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=54.8

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..++|+||| ...+|.++|..|.+.|.  +..|+++....                            .++++.++.||+
T Consensus       160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI  211 (297)
T PRK14168        160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADI  211 (297)
T ss_pred             CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCE
Confidence            368999999 58899999999998720  16888764321                            156777899999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ||.|+.-..+   +.  ..+++++++||++
T Consensus       212 vVsAvGkp~~---i~--~~~ik~gavVIDv  236 (297)
T PRK14168        212 LIVAAGVPNL---VK--PEWIKPGATVIDV  236 (297)
T ss_pred             EEEecCCcCc---cC--HHHcCCCCEEEec
Confidence            9999874442   11  4567899999887

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=93.05  E-value=0.21  Score=48.99  Aligned_cols=72  Identities=25%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.+ -+|.+||..|..++  +.|+++....                            .++.+..+.||++|
T Consensus       155 ~Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T----------------------------~~l~~~~k~ADIvv  204 (283)
T COG0190         155 RGKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRT----------------------------KDLASITKNADIVV  204 (283)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCC----------------------------CCHHHHhhhCCEEE
Confidence            37899999975 57999999999987  8999886432                            15667788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+--..+-.     .++++++.++|.+
T Consensus       205 ~AvG~p~~i~-----~d~vk~gavVIDV  227 (283)
T COG0190         205 VAVGKPHFIK-----ADMVKPGAVVIDV  227 (283)
T ss_pred             EecCCccccc-----cccccCCCEEEec
Confidence            9997543211     5778899999886

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=93.03  E-value=0.13  Score=52.69  Aligned_cols=34  Identities=21%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a--G~~~~V~l~~r~~  162 (420)
                      +..|.|||+|.+|.++|..|++.  |  ++|+++++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~   37 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES   37 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence            35899999999999999999998  7  8999999874

>PRK08013 oxidoreductase; Provisional

Probab=93.01  E-value=0.11  Score=53.22  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+|.|||+|..|.++|..|++.|  ++|+++++.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence            58999999999999999999998  99999998754

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.99  E-value=0.23  Score=49.85  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=35.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ..|||.|.| +|-+|+.++..|++.|  ++|++.+|+.+..+.+.
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~   51 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLL   51 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence            367999999 5999999999999998  89999998876555443

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=92.98  E-value=0.64  Score=41.72  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CCeEEEEc-c-cHHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700          127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       127 ~mkI~IIG-a-GamG~alA~~La~aG~~~~V~l~~r~~-------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      .+||++|| . +++..+++..|++-|  .+|++.....       +.++..++....        -...+..++|+++++
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--------~g~~i~~~~~~~e~l   71 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKFG--MEVVLIAPEGLRYPPDPEVLEKAKKNAKK--------NGGKITITDDIEEAL   71 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHTT--SEEEEESSGGGGGSHHHHHHHHHHHHHHH--------HTTEEEEESSHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHcC--CEEEEECCCcccCCCCHHHHHHHHHHHHH--------hCCCeEEEeCHHHhc
Confidence            46999999 4 899999999999987  7898887654       122222111000        012467789999999


Q ss_pred             cCCcEEEEccCh
Q 014700          198 LGADYCLHAMPV  209 (420)
Q Consensus       198 ~~aDiVIlaVp~  209 (420)
                      +++|+|+.-.-.
T Consensus        72 ~~aDvvy~~~~~   83 (158)
T PF00185_consen   72 KGADVVYTDRWQ   83 (158)
T ss_dssp             TT-SEEEEESSS
T ss_pred             CCCCEEEEcCcc
Confidence            999999876543

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=92.97  E-value=0.92  Score=42.91  Aligned_cols=42  Identities=19%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++++|+++..+.+.+
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   53 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAG--AHVLVNGRNAATLEAAVA   53 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence            578999996 999999999999998  899999999876655443

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.93  E-value=0.12  Score=52.47  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      |.+|.|||+|..|.++|..|++.|  ++|+++++.
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~   33 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKG--IKTTIFESK   33 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCC--CeEEEecCC
Confidence            468999999999999999999998  899999975

>PRK06949 short chain dehydrogenase; Provisional

Probab=92.90  E-value=1  Score=42.59  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.+
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~   51 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA   51 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            478999996 999999999999998  899999999887666544

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.81  E-value=0.18  Score=52.80  Aligned_cols=36  Identities=33%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      +|||.|+|+|.-|.++|..|.+.|  ++|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence            789999999999999999999998  999999966543

>PRK07045 putative monooxygenase; Reviewed

Probab=92.79  E-value=0.13  Score=52.43  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ..++|.|||+|..|.+.|..|+++|  ++|+++++.++
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence            3468999999999999999999998  89999997763

>PRK08251 short chain dehydrogenase; Provisional

Probab=92.79  E-value=1.2  Score=41.83  Aligned_cols=42  Identities=19%  Similarity=0.346  Sum_probs=35.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.| .|.+|.+++..|++.|  ++|++.+|+++..+.+..
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~   44 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKA   44 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            35788999 6999999999999998  899999999877665543

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=92.74  E-value=0.41  Score=48.60  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeC---CHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATT---DAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~t---d~~eal~~aDi  202 (420)
                      +++|||||.|..|..|+..-.+-|  ++|.+++.+++. +..+.......             ..+   .+.+.++.||+
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG--~~v~vLdp~~~~PA~~va~~~i~~-------------~~dD~~al~ela~~~DV   65 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLG--IKVIVLDPDADAPAAQVADRVIVA-------------AYDDPEALRELAAKCDV   65 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcC--CEEEEecCCCCCchhhcccceeec-------------CCCCHHHHHHHHhhCCE
Confidence            478999999999999999988887  999999977642 22332221110             112   35566778999


Q ss_pred             E---EEccChhhHHHHHHH
Q 014700          203 C---LHAMPVQFSSSFLEG  218 (420)
Q Consensus       203 V---IlaVp~~~l~~vl~~  218 (420)
                      |   |--||.+.++.+.+.
T Consensus        66 iT~EfE~V~~~aL~~l~~~   84 (375)
T COG0026          66 ITYEFENVPAEALEKLAAS   84 (375)
T ss_pred             EEEeeccCCHHHHHHHHhh
Confidence            8   557887777766655

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.73  E-value=0.84  Score=43.14  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|.+.+|+++..+++.+
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   49 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD   49 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence            468999997 999999999999998  899999999876555443

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.72  E-value=1.1  Score=44.29  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..++..
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~   55 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAV   55 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            468888995 889999999999998  89999999987655443

>PRK08017 oxidoreductase; Provisional

Probab=92.70  E-value=0.28  Score=46.31  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=35.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++|.|.|+ |.+|.+++..|++.|  ++|.+.+|+++..+.+.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~   44 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMNS   44 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHHh
Confidence            47999998 999999999999998  899999999877665543

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.68  E-value=0.71  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .++|.|+|.|..|.+.|..|++.|  ++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence            468999999999999999999998  89999997653

>PRK06197 short chain dehydrogenase; Provisional

Probab=92.67  E-value=1.1  Score=43.89  Aligned_cols=40  Identities=25%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..+..
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~   56 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAA   56 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence            468999996 999999999999998  8999999997765443

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=92.64  E-value=0.37  Score=55.00  Aligned_cols=101  Identities=14%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             CccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH----------
Q 014700           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA----------  163 (420)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~----------  163 (420)
                      .--+|.+.--+|+.  -|=.   .  .....-..++|+|||.|.-|.+.|..|-+.|  |.|++|.|.+.          
T Consensus      1759 ksie~aiid~af~e--gwm~---p--~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygip 1829 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEE--GWMK---P--CPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGIP 1829 (2142)
T ss_pred             cchhhHHHHHHHHh--cCCc---c--CCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecCC
Confidence            34567788888887  3652   2  2234445789999999999999999999999  99999998752          


Q ss_pred             -----------HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700          164 -----------VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (420)
Q Consensus       164 -----------~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~  209 (420)
                                 +++-+.++|++  ++....+-+.    -++++..+.-|.|++|+-+
T Consensus      1830 nmkldk~vv~rrv~ll~~egi~--f~tn~eigk~----vs~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1830 NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGKH----VSLDELKKENDAIVLATGS 1880 (2142)
T ss_pred             ccchhHHHHHHHHHHHHhhCce--EEeecccccc----ccHHHHhhccCeEEEEeCC
Confidence                       12222333321  1111111111    2567777889999998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=92.63  E-value=0.13  Score=52.79  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .||.|||+|..|.++|..|+++|  ++|+++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence            68999999999999999999998  89999998753

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=92.62  E-value=0.15  Score=52.35  Aligned_cols=33  Identities=27%  Similarity=0.556  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..+|.|||+|..|.++|..|++.|  ++|+++++.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence            358999999999999999999998  899999985

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.61  E-value=0.14  Score=51.71  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .|.|||+|.+|.+.|..|++.|  .+|+++++..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence            5899999999999999999998  8999998753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.60  E-value=0.12  Score=54.33  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .++|+|||||+-|.+.|+.|.+.|  ++|+++.|++.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~   40 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD   40 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence            579999999999999999999998  89999888753

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.59  E-value=0.29  Score=45.85  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ||+.|.|+ |.+|.+++..|++.|  ++|++.+|+++.++.+.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~   42 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK   42 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            58999996 999999999999998  899999999887666544

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.59  E-value=0.89  Score=45.60  Aligned_cols=91  Identities=20%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r---~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..+|.|+|+|.+|...+..+...|  .+|++++|   ++++.+.+.+.|........    ..+.   +. ......|+|
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~~---~~-~~~~~~d~v  242 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPVA---EV-KLVGEFDLI  242 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cchh---hh-hhcCCCCEE
Confidence            468999999999999988887777  78999988   56666666655432100000    0000   01 113468999


Q ss_pred             EEccChh-hHHHHHHHhhhcCCCCCeEEE
Q 014700          204 LHAMPVQ-FSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       204 IlaVp~~-~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      |-++... .+.+.+    ..++++..++.
T Consensus       243 id~~g~~~~~~~~~----~~l~~~G~~v~  267 (355)
T cd08230         243 IEATGVPPLAFEAL----PALAPNGVVIL  267 (355)
T ss_pred             EECcCCHHHHHHHH----HHccCCcEEEE
Confidence            9999854 344433    33445444443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.57  E-value=1.6  Score=38.85  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeC-CHHHHHHHHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMR-DPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r-~~~~~~~i~~  170 (420)
                      +||+|+|+|.||..++..+.+.. +.++.. .++ +++.+..+.+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~-~~~lvai~d~~~~~~~a~ll~   44 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERP-DIEVVAINDLTDPETLAHLLK   44 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CCEEEEeecCCCHHHHHHHhc
Confidence            58999999999999999987643 256654 453 5555555443

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.55  E-value=1.2  Score=42.36  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=34.5

Q ss_pred             CCeEEEEcc-c-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-G-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .+++.|.|+ | .+|.+++..|++.|  ++|++.+|+++..+...
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~   59 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA   59 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            478999997 6 69999999999998  89999999887655443

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.55  E-value=1  Score=42.69  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|.+.+|+++..+.+.
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   51 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAA   51 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            468999996 999999999999998  89999999987655443

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.55  E-value=0.74  Score=45.96  Aligned_cols=42  Identities=21%  Similarity=0.419  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+.+.|.|+ |.+|.++|..|++.|  ++|.+++|+++..+++.+
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~   95 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSD   95 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH
Confidence            467889996 889999999999998  899999999987766554

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=92.51  E-value=0.29  Score=46.53  Aligned_cols=71  Identities=17%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+|.|.|+ |.+|..+...|.+.|  ++|....|+++....+. .+... ...+      +.-..++..++.+.|.++++
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~--~~v~~~~r~~~~~~~~~-~~v~~-~~~d------~~~~~~l~~a~~G~~~~~~i   70 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARG--HEVRAAVRNPEAAAALA-GGVEV-VLGD------LRDPKSLVAGAKGVDGVLLI   70 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCC--CEEEEEEeCHHHHHhhc-CCcEE-EEec------cCCHhHHHHHhccccEEEEE
Confidence            68999995 999999999999998  99999999998877766 22211 0111      11112456677899999988


Q ss_pred             cC
Q 014700          207 MP  208 (420)
Q Consensus       207 Vp  208 (420)
                      .+
T Consensus        71 ~~   72 (275)
T COG0702          71 SG   72 (275)
T ss_pred             ec
Confidence            88

>PRK06180 short chain dehydrogenase; Provisional

Probab=92.50  E-value=0.31  Score=47.08  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++|.|.|+ |.+|.+++..|++.|  ++|.+.+|+++..+.+.+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA   46 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence            3568999996 999999999999998  899999999887666554

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.48  E-value=0.28  Score=48.50  Aligned_cols=74  Identities=26%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..++|+||| ...+|.++|..|.+.|.  +..|+++....                            .++.+.++.||+
T Consensus       156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADI  207 (293)
T PRK14185        156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADI  207 (293)
T ss_pred             CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCE
Confidence            368999999 57899999999998731  26888774321                            156677889999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ||.|+....+   +.  ..+++++++||++
T Consensus       208 vIsAvGkp~~---i~--~~~vk~gavVIDv  232 (293)
T PRK14185        208 IIAALGQPEF---VK--ADMVKEGAVVIDV  232 (293)
T ss_pred             EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence            9999985543   11  4567899999887

>PRK13984 putative oxidoreductase; Provisional

Probab=92.46  E-value=0.41  Score=52.05  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..++|.|||+|..|.+.|..|.+.|  ++|+++++.+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~  316 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLS  316 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            4678999999999999999999998  8999998764

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=92.43  E-value=0.16  Score=52.01  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ..+|.|||+|..|.+.|..|++.|  ++|+++++.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence            358999999999999999999999  99999998763

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.42  E-value=0.34  Score=54.65  Aligned_cols=67  Identities=10%  Similarity=0.110  Sum_probs=45.6

Q ss_pred             cCCCeEEEEcccHHHHHH-HHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          125 ERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~al-A~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..+++|.|||+|..|.+. |..|.+.|  ++|+++|.++ ...+.+.+.|+.  +.          .-.+. +.+.++|+
T Consensus         2 ~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~~----------~g~~~-~~~~~~d~   66 (809)
T PRK14573          2 MKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--FF----------LGHQE-EHVPEDAV   66 (809)
T ss_pred             CCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--Ee----------CCCCH-HHcCCCCE
Confidence            445679999999999997 99999998  9999999654 233445443321  10          01122 34667899


Q ss_pred             EEEc
Q 014700          203 CLHA  206 (420)
Q Consensus       203 VIla  206 (420)
                      ||..
T Consensus        67 vV~S   70 (809)
T PRK14573         67 VVYS   70 (809)
T ss_pred             EEEC
Confidence            8875

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.39  E-value=1.2  Score=44.41  Aligned_cols=91  Identities=16%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDi  202 (420)
                      ..+|.|+|+|.+|.+....+...|  . .|++.++++++.+.+.+.|........     .    .+.++..   ...|+
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-----~----~~~~~~~~~~g~~D~  238 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ-----N----DDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC-----c----ccHHHHhccCCCCCE
Confidence            468999999999999888777777  5 688899999888877765532111000     0    0122211   24799


Q ss_pred             EEEccChh-hHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ||-++... .+...++-    ++++..++.+
T Consensus       239 vid~~G~~~~~~~~~~~----l~~~G~iv~~  265 (343)
T PRK09880        239 SFEVSGHPSSINTCLEV----TRAKGVMVQV  265 (343)
T ss_pred             EEECCCCHHHHHHHHHH----hhcCCEEEEE
Confidence            99998864 34444433    4445555444

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=92.38  E-value=0.34  Score=47.88  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC  165 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~  165 (420)
                      .|+|.|.|+ |.+|+.++..|++.|  ++|++..|+.+..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G--~~V~~~~r~~~~~   42 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRG--YTINATVRDPKDR   42 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCC--CEEEEEEcCCcch
Confidence            478999995 999999999999998  8999888876543

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.37  E-value=1.3  Score=42.08  Aligned_cols=41  Identities=24%  Similarity=0.233  Sum_probs=34.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .+.+.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+...
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   49 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAG--ASVAICGRDEERLASAE   49 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence            467899996 789999999999998  89999999987665543

>PRK10637 cysG siroheme synthase; Provisional

Probab=92.36  E-value=2.1  Score=45.10  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=49.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||.|||+|.++..=+..|.+.|  .+|+++...- +.++.+.+.+. ..+..     ..   . ...+ ++++++||.
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~~-----~~---~-~~~d-l~~~~lv~~   78 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLVE-----GP---F-DESL-LDTCWLAIA   78 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEEe-----CC---C-ChHH-hCCCEEEEE
Confidence            579999999999999999999998  8999997542 23344443321 11100     00   0 2233 688999999


Q ss_pred             ccChhhHH
Q 014700          206 AMPVQFSS  213 (420)
Q Consensus       206 aVp~~~l~  213 (420)
                      |+.+..+.
T Consensus        79 at~d~~~n   86 (457)
T PRK10637         79 ATDDDAVN   86 (457)
T ss_pred             CCCCHHHh
Confidence            99875543

>PRK12828 short chain dehydrogenase; Provisional

Probab=92.35  E-value=1.4  Score=40.76  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++...+
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~   46 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAAPLSQ   46 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChHhHHH
Confidence            468999996 999999999999998  899999998765433

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=92.32  E-value=0.14  Score=54.91  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=28.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      +||+|||||.-|.+.++.|.+.|  ++|+++.++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCC
Confidence            69999999999999999999998  89999998875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07102 short chain dehydrogenase; Provisional

Probab=92.31  E-value=0.34  Score=45.54  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ||+|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~   42 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAG--ARLYLAARDVERLERLA   42 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHH
Confidence            468999994 999999999999998  89999999987665543

>PRK06194 hypothetical protein; Provisional

Probab=92.30  E-value=1.3  Score=42.71  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      +++|.|.|+ |.+|..++..|++.|  ++|++++|+.+..+.+.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   47 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALG--MKLVLADVQQDALDRAV   47 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence            468999995 899999999999998  89999999876555443

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.30  E-value=0.48  Score=49.54  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||.|||+|..|.+.|..|.+.|  ++|+++|+.+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence            7999999999999999999998  9999999764

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.29  E-value=1.2  Score=41.98  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   47 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA   47 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 899999999999998  899999999876555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
1evy_A	366	Crystal Structure Of Leishmania Mexicana Glycerol-3		3e-40
3k96_A	356	2.1 Angstrom Resolution Crystal Structure Of Glycer		2e-36
1z82_A	335	Crystal Structure Of Glycerol-3-Phosphate Dehydroge		2e-35
1x0x_A	354	Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D		2e-26
1wpq_A	349	Ternary Complex Of Glycerol 3-Phosphate Dehydrogena		3e-26
1x0v_A	354	Crystal Structure Of Homo Sapien Glycerol-3-Phospha		3e-26
2pla_A	349	Crystal Structure Of Human Glycerol-3-Phosphate Deh		4e-22
1yj8_A	375	Initial Structural Analysis Of Plasmodium Falciparu		3e-18
4fgw_A	391	Structure Of Glycerol-3-phosphate Dehydrogenase, Gp		3e-18
1txg_A	335	Structure Of Glycerol-3-Phosphate Dehydrogenase Fro		5e-17

>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366

Iteration: 1
 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 168/294 (57%), Gaps = 12/294 (4%)
Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
           T +  AK ++L   NK VV G G+FGTA+A  ++ K  ++ V+ +  +    + +NEK  
Sbjct: 3   TKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEV--RLVNEKRE 59
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG-----ISDYVDPGLP 228
           N  +    +L  N+  T+D + A  GA+  L  +P QF   F E      I+   +  +P
Sbjct: 60  NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119
Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
            +  +KG+E +TL+  ++II + L +P      L+GPSFA+E+   + T + +AS D  +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINV 177
Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
           A  +Q+++++  +      ++D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237
Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDI 400
             EIR L   +G   + + GL+G GD+ LTC   LSRN TVG +LG G  +++I
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEI 291

>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
           + +LG GS+GTA+A  +A K  +++++    D      +  +  N RY P    PE + A
Sbjct: 32  IAILGAGSWGTALALVLARKGQKVRLWSYESDH--VDEMQAEGVNNRYLPNYPFPETLKA 89
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISD---YVDPGLPFISLSKGLELNTLRMMSQ 246
             D K +L G    L  +P   S +F E I+     +D        +KGL   + R++ +
Sbjct: 90  YCDLKASLEGVTDILIVVP---SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHE 145
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
           ++   L   + P   +SGPS A E+   LPTA+ +AS + + +  + + L  +  R+  +
Sbjct: 146 VVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKN 203
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
            D+ GVE+ G++KN+LAIA GI  G+ LG+N+ AAL+ +G +E+  L +  G K  T+TG
Sbjct: 204 DDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG 263
Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
           L+G GD++LTC  N SRNR  G+ LG G
Sbjct: 264 LAGLGDLVLTCTDNQSRNRRFGLALGEG 291

>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 151/280 (53%), Gaps = 15/280 (5%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           +  VLG GS+GT  A  +     +  V +  R   +   IN  H +  Y  E K+   V 
Sbjct: 16  RFFVLGAGSWGTVFAQXLHENGEE--VILWARRKEIVDLINVSHTSP-YVEESKI--TVR 70
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT D +  +   D  + A+PVQ+    L  +   V P    ++LSKG+E+ T + +S+I+
Sbjct: 71  ATNDLEE-IKKEDILVIAIPVQYIREHLLRLP--VKPSX-VLNLSKGIEIKTGKRVSEIV 126
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P   +  LSGPS A E+  KLPTA+ +A ++ K    +Q+ +++++ R+ T  D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGENSK---ELQKRISTEYFRVYTCED 180
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEIAGALKNV+AIAAGI+ G    +N+ AAL  +G  EI       GA   T  GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGXFFGADQKTFXGLA 240
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
           G GD+ +TC    SRNR  G  +  G     +L S NQV+
Sbjct: 241 GIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVV 280

>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 20/276 (7%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
           + KV ++G G++G+A+A  V    +QL     +V M + +  +      + IN +H N +
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 67
Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
           Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL KG+
Sbjct: 68  YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127
Query: 237 EL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
           +   N L+++S++I + L  P      L G + A E+ ++      +  KD      +++
Sbjct: 128 DEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 184
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+   A
Sbjct: 185 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244
Query: 355 TKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
               + P   AT     G  D++ TC+    RNR V
Sbjct: 245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 278

>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 20/276 (7%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
           + KV ++G G++G+A+A  V    +QL     +V M + +  +      + IN +H N +
Sbjct: 3   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 62
Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
           Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL KG+
Sbjct: 63  YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANPTGISLIKGV 122
Query: 237 EL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
           +   N L+++S++I + L  P      L G + A E+ ++      +  KD      +++
Sbjct: 123 DEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 179
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+   A
Sbjct: 180 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 239
Query: 355 TKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
               + P   AT     G  D++ TC+    RNR V
Sbjct: 240 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 273

>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 28/280 (10%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
           + KV ++G G++G+A+A  V    +QL  +    DP V               + IN +H
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTXWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
            N +Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL
Sbjct: 64  ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
            KG++   N L+++S++I + L  P      L G + A E+ ++      +  KD     
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
            +++L  + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E 
Sbjct: 181 LLKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEX 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTV 387
              A    + P   AT     G  D++ TC+    RNR V
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKV 278

>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 21/292 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLK-----VYMLMRDPAV-----CQSINEKHCNCRYF 178
           KV ++G G++G+A+A  + N   +L+     V M + +  V        IN  H N +Y 
Sbjct: 7   KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238
           P  KLPENV+A ++   A+  AD  +  +P QF     + I+  V      I+L KG++ 
Sbjct: 67  PGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDE 126
Query: 239 --NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL 296
               L+++S II + +         L G + A E+  +      + SK  +     ++LL
Sbjct: 127 GPEGLKLISDIIREKMG---IDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELL 183
Query: 297 ASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA-- 354
            + + RI+   D   VE+ GALKN++A+ AG   G+  G+N+ AA++  G  E+   A  
Sbjct: 184 QTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARI 243
Query: 355 -TKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM 404
             K     AT     G  D++ TC+    RNR V      +G+ ++++   M
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTGKTIEELEKEM 293

>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVA-NKKSQL----KVYMLMRDPAV-----CQSINEKHCNCRYF 178
           K+ +LG G++ +A++  V  N K+      +V M +RD  V        IN KH N +Y 
Sbjct: 23  KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD----YVDPGLPFISLSK 234
               LP N++A +D  + +  AD  +  +P Q+  S L  I +     +      ISL+K
Sbjct: 83  KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142
Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
           G   + N +++ S  I   L  P     ALSG + A+++  +  +   +   D+      
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199
Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
           Q++    + +I+  ++   VEI GALKN++ +A G   G+NL  NS +A++  G +E+
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257

>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-----MLMRDPAV-----CQSINEKHC 173
           E+  KV V+G G++GT +A  VA N K   +V+     M + +  +      + IN +H 
Sbjct: 32  EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQ 91
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233
           N +Y P   LP+N++A  D   ++   D  +  +P QF       +  +VD  +  IS  
Sbjct: 92  NVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCL 151
Query: 234 KGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK------- 284
           KG E+    ++++S  I + L        ALSG + A E+  +  +   VA         
Sbjct: 152 KGFEVGAKGVQLLSSYITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRG 208
Query: 285 -----DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM 339
                D K+  A   L    +  +S   DV G+ I GALKNV+A+  G V G+  GNN+ 
Sbjct: 209 EGKDVDHKVLKA---LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNAS 265
Query: 340 AALVAQGCSEI 350
           AA+   G  EI
Sbjct: 266 AAIQRVGLGEI 276

>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 37/297 (12%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR----------YFP 179
           V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R          ++P
Sbjct: 3   VSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP 62
Query: 180 EQ--KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGL 236
           EQ  K  EN      A+  LLG       +PV   S  L  + D Y+      + +SKGL
Sbjct: 63  EQLEKCLEN------AEVVLLGVS-TDGVLPVM--SRILPYLKDQYI------VLISKGL 107
Query: 237 --ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
               N++  + + + +   + R+  +A++GP+ A E+  ++PT +V +S     AN +++
Sbjct: 108 IDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKE 167
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSE 349
           +  +++  +  ++D+ G EI  ALKNV +IA   + G         +N+   +  +  +E
Sbjct: 168 IFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227
Query: 350 IRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
           +  L   +G    T  GLSG GD++ T      RN  +G  LG G  +D+ +  + +
Sbjct: 228 MAELIEILGGDRETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELER 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	1e-124
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	1e-119
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	1e-107
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	1e-104
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	1e-102
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	3e-97
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	3e-32
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	4e-19
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vjt_A	483	Alpha-glucosidase; TM0752, structural genomics, JC	1e-05
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	4e-05
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	7e-04
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	8e-04

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366

 Score =  363 bits (933), Expect = e-124
 Identities = 99/301 (32%), Positives = 164/301 (54%), Gaps = 11/301 (3%)

Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
           + +  +  D L   NK VV G G+FGTA+A  ++ K  +  V +   +    + +NEK  
Sbjct: 2   STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRE 59

Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLP 228
           N  +    +L  N+  T+D + A  GA+  L  +P QF   F E     +     +  +P
Sbjct: 60  NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119

Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
            +  +KG+E +TL+  ++II + L  P      L+GPSFA+E+   + T + +AS D  +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFL--PSPLLSVLAGPSFAIEVATGVFTCVSIASADINV 177

Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
           A  +Q+++++  +      ++D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237

Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
             EIR L   +G   + + GL+G GD+ LTC   LSRN TVG +LG G  +++I  +   
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 297

Query: 407 V 407
           V
Sbjct: 298 V 298

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356

 Score =  349 bits (899), Expect = e-119
 Identities = 90/283 (31%), Positives = 148/283 (52%), Gaps = 5/283 (1%)

Query: 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
              + + +LG GS+GTA+A  +A K  +  V +   +      +  +  N RY P    P
Sbjct: 27  PFKHPIAILGAGSWGTALALVLARKGQK--VRLWSYESDHVDEMQAEGVNNRYLPNYPFP 84

Query: 185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
           E + A  D K +L G    L  +P       +  +   +D        +KGL   + R++
Sbjct: 85  ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLL 143

Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
            +++   L   + P   +SGPS A E+   LPTA+ +AS + + +  + + L  +  R+ 
Sbjct: 144 HEVVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVY 201

Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
            + D+ GVE+ G++KN+LAIA GI  G+ LG+N+ AAL+ +G +E+  L +  G K  T+
Sbjct: 202 KNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETL 261

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           TGL+G GD++LTC  N SRNR  G+ LG G    +   ++ Q 
Sbjct: 262 TGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQA 304

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335

 Score =  317 bits (816), Expect = e-107
 Identities = 101/279 (36%), Positives = 149/279 (53%), Gaps = 15/279 (5%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           +  VLG GS+GT  A  +     +  V +  R   +   IN  H +  Y  E K+   V 
Sbjct: 16  RFFVLGAGSWGTVFAQMLHENGEE--VILWARRKEIVDLINVSHTS-PYVEESKIT--VR 70

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT D +  +   D  + A+PVQ+    L  +          ++LSKG+E+ T + +S+I+
Sbjct: 71  ATNDLE-EIKKEDILVIAIPVQYIREHLLRL---PVKPSMVLNLSKGIEIKTGKRVSEIV 126

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P   +  LSGPS A E+  KLPTA+ +A ++   +  +Q+ +++++ R+ T  D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGEN---SKELQKRISTEYFRVYTCED 180

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEIAGALKNV+AIAAGI+ G    +N+ AAL  +G  EI       GA   T  GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLA 240

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQV 407
           G GD+M+TC    SRNR  G  +  G     +L S NQV
Sbjct: 241 GIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQV 279

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335

 Score =  311 bits (798), Expect = e-104
 Identities = 63/285 (22%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
            V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R   +      + 
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQ 246
                +  L  A+  L  +        +  I  Y+      + +SKGL    N++  + +
Sbjct: 61  WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPE 119

Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
            + +   + R+  +A++GP+ A E+  ++PT +V +S     AN ++++  +++  +  +
Sbjct: 120 AVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVT 179

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKP 361
           +D+ G EI  ALKNV +IA   + G         +N+   +  +  +E+  L   +G   
Sbjct: 180 TDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDR 239

Query: 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
            T  GLSG GD++ T      RN  +G  LG G  +D+ +  + +
Sbjct: 240 ETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELER 282

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354

 Score =  306 bits (785), Expect = e-102
 Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 23/300 (7%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
           + KV ++G G++G+A+A  V    +QL     +V M + +  +      + IN +H N +
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 67

Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
           Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL KG+
Sbjct: 68  YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127

Query: 237 ELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
           +     L+++S++I + L  P      L G + A E+ ++      +  KD      +++
Sbjct: 128 DEGPNGLKLISEVIGERLGIP---MSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 184

Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+   A
Sbjct: 185 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244

Query: 355 TKMGAKPA---TITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVL 408
               + P    T     G  D++ TC+    RNR V      +G+ ++ +   +   Q L
Sbjct: 245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKL 302

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375

 Score =  294 bits (756), Expect = 3e-97
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 28/303 (9%)

Query: 129 KVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAV-----CQSINEKHCNCRYF 178
           K+ +LG G++ +A++  V          + +V M +RD  V        IN KH N +Y 
Sbjct: 23  KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82

Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDY----VDPGLPFISLSK 234
               LP N++A +D  + +  AD  +  +P Q+  S L  I +     +      ISL+K
Sbjct: 83  KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142

Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
           G   + N +++ S  I   L  P     ALSG + A+++  +  +   +   D+      
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIP---CSALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199

Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352
           Q++    + +I+  ++   VEI GALKN++ +A G   G+NL  NS +A++  G +E+  
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMIL 259

Query: 353 LATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG---SGEKLDDILSSM--N 405
                        +    G  DI+ +      RN             +  +++ + +   
Sbjct: 260 FGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKG 317

Query: 406 QVL 408
           Q L
Sbjct: 318 QKL 320

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359

 Score =  124 bits (312), Expect = 3e-32
 Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 24/265 (9%)

Query: 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPE 185
            +    VLG G+ G A AA++A K     V     D    + I ++       P      
Sbjct: 3   ESKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTA 60

Query: 186 NV-IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
           +  + T+D   A+  AD  L  +P    +S    I+ Y+  G   I L+ G     L   
Sbjct: 61  HPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFR 119

Query: 245 SQIIPQALRN---------PRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQL 295
             +                         G      +   +  A + A+K       +  +
Sbjct: 120 KILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSV 179

Query: 296 LASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---------NNSMAALVAQG 346
           L         +   T +    A+ + L          +             S+ +L  + 
Sbjct: 180 LPQ--YVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKV 237

Query: 347 CSEIRWLATKMGAKPATITGLSGTG 371
            +E   +A        ++       
Sbjct: 238 DAERIAIAKAFDLNVPSVCEWYKES 262

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 85.1 bits (210), Expect = 4e-19
 Identities = 42/243 (17%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
           K+ VLG G+ G  MA  +A      +V +  RDP    +  E          Q LPE+  
Sbjct: 21  KIAVLGTGTVGRTMAGALA--DLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH 78

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
           +          GA+  ++A     S + L         G   + ++  L+ +     +  
Sbjct: 79  VHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLN 138

Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
                          +  S   ++    P A VV +    L      L+           
Sbjct: 139 PV-------------NTDSLGEQIQRTFPEAKVVKT----LNTMNASLMVDPGRAAGGDH 181

Query: 308 DVTGVEIAG----ALKNVLAIA--AGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361
            V    ++G    A   V  +    G    ++LG+ + A            L   +G   
Sbjct: 182 SV---FVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGALGTAN 238

Query: 362 ATI 364
              
Sbjct: 239 FNF 241

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404

 Score = 77.6 bits (190), Expect = 1e-15
 Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 19/208 (9%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
           KV V GGG+    ++   A++    +V +L       +   +              +   
Sbjct: 4   KVCVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62

Query: 188 --------IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL--SKGLE 237
                   + T D + A+ GAD  +  +P      + + ++ YV      + L    G E
Sbjct: 63  TEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFE 122

Query: 238 LNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLA 297
                   + I              + P      + +    + V      LA ++ +  A
Sbjct: 123 F-----QCRDILGDKAAAVSMMSFETLPWAC--RIKEFGRKVEVLGTKSVLAASLIKGTA 175

Query: 298 SKHLRISTSSDVTGVEIAGALKNVLAIA 325
                +ST   + G E    L       
Sbjct: 176 KTVDPLSTLQMLHGAEPVFRLAKHFLEM 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 52/351 (14%), Positives = 97/351 (27%), Gaps = 84/351 (23%)

Query: 12  FLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSA------TTNNNN 65
               I +           HI    +      +    L +TL S                N
Sbjct: 41  MPKSILSKEEID------HI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 66  DNTIITPYPDDP-DPEPVSAVSSEIRTRDGRDRRKIVK--VAWEKLVRWSRTWRSKAKTD 122
              +++P   +   P  ++ +  E R R   D +   K  V+  +     R    +    
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---- 146

Query: 123 ILERTNKVVVLGGGSFG-TAMAAHVANKKSQL-----KVY------------MLMRDPAV 164
            L     V++ G    G T +A  V            K++            +L     +
Sbjct: 147 -LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 165 CQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADY--CL----------HAMPVQF 211
              I+    + R      +   + +       LL    Y  CL                 
Sbjct: 206 LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 212 SSSFL-----EGISDYVDPG----LPFISLSKGLEL-NTLRMMSQII---PQALRNPRQP 258
           S   L     + ++D++       +     S  L       ++ + +   PQ L  PR+ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PRE- 321

Query: 259 FIALSGPSFALELMNKLPTAMVVASKDRKLA--NAVQQLLASKHLRISTSS 307
              L+     L        +++  S    LA  +  + +   K   I  SS
Sbjct: 322 --VLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 129 KVVVLGGGSFGTA----MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
           K+ ++G GS   A           + S+   ++ M D    +         +Y  E   P
Sbjct: 14  KISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSP 73

Query: 185 ENVIATTDAKTALLGADYCLHAMPVQ 210
             ++ T+    A+ GAD+ ++     
Sbjct: 74  VKIVKTSSLDEAIDGADFIINTAYPY 99

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 121 TDILERTNKVVVLGGGSFGTA------MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN 174
           +D +++  K+  +GGGS  T       +  +      +L +  +         I      
Sbjct: 1   SDAMDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGALAK 59

Query: 175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209
            R   +  +P  +  T D + AL GAD+      V
Sbjct: 60  -RMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRV 93

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 18/106 (16%)

Query: 129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
            V +LG GG  G  +   +    S   +  +   P                   +L    
Sbjct: 13  TVAILGAGGKMGARITRKI--HDSAHHLAAIEIAPEGRD---------------RLQGMG 55

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233
           I  TD    +  AD  + A+P        E I   V PG   + L 
Sbjct: 56  IPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILD 101

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 127 TNKVVVLGGGSFGTA--MAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL 183
           + K+ ++G GS   +  + + +      L    + + D    +         +Y  E   
Sbjct: 3   SVKIGIIGAGSAVFSLRLVSDLCKTP-GLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 61

Query: 184 PENVIATTDAKTALLGADYCLHAMPV 209
                 T +    ++ AD+ ++   V
Sbjct: 62  DLKFEKTMNLDDVIIDADFVINTAMV 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	100.0
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	100.0
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	100.0
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	100.0
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	100.0
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	100.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	100.0
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.95
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.95
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.94
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.93
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.93
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.93
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.92
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.91
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.91
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.89
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.89
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.89
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.88
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.88
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.88
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.88
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.88
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.87
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.87
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.87
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.87
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.87
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.87
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.86
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.86
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.86
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.85
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.85
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.85
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.85
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.85
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.85
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.85
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.84
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.84
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.84
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.83
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.82
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.82
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.81
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.81
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.81
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.8
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.79
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.79
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.78
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.78
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.77
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.76
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.74
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.74
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.74
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.74
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.73
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.7
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.69
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.66
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.66
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.66
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.64
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.63
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.6
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.6
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.6
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.58
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.57
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.55
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.49
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.18
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.44
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.4
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.39
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.39
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.39
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.23
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.11
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.1
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.09
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.04
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.04
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.04
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.03
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.03
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.02
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.99
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.97
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.97
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.97
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.94
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.92
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.92
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.91
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.9
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.89
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.89
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.89
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.88
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.88
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.87
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.86
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.86
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.86
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.85
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.85
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.85
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.83
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.83
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.83
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.81
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.8
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.8
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.78
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.77
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.77
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.76
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.74
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.74
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.68
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.68
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.67
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.63
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.6
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.54
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.52
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.51
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.5
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.5
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.5
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.5
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.48
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.44
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.44
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.42
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.4
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.4
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.39
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.37
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.37
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.36
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.36
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.34
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.33
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.33
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.33
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.31
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.31
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.28
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.27
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.26
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.26
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.26
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.25
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.25
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.24
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.24
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.22
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.21
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.2
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.2
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.19
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.17
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.17
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.17
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.16
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.16
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.14
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.13
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.13
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.12
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.12
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.12
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.09
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.08
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.07
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.06
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.05
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.03
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.03
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.02
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.02
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.02
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.01
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.0
4had_A	350	Probable oxidoreductase protein; structural genomi	97.99
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.98
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.98
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.97
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.96
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.93
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.92
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.92
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.92
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.91
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.91
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.9
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.9
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.88
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.88
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.85
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.85
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.84
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.83
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.82
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.82
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.82
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.8
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.79
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.78
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.78
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.77
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.76
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.74
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.72
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.72
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.71
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.69
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.68
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.66
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.66
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.63
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.63
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.62
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.62
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.62
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.61
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.54
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.52
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.52
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.5
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.5
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.5
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.49
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.48
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.47
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.47
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.46
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.46
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.46
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.44
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.43
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.42
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.38
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.37
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.35
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.35
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.34
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.33
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.33
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.31
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.3
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.3
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.29
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.29
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.29
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.28
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.27
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.26
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.25
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.23
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.21
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.19
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.17
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.17
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.15
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.14
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.14
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.12
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.11
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.1
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.08
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.08
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.07
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.05
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.05
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.04
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.98
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.98
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.97
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.96
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.94
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.88
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.84
1lnq_A	336	MTHK channels, potassium channel related protein;	96.84
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.81
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.77
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.77
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.73
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.71
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.7
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.69
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.69
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.69
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.68
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.66
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.66
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.66
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.6
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.6
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.59
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.56
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.53
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.53
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.53
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.53
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	96.52
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.5
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.48
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.47
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.46
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.39
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.38
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.33
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.3
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.2
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.17
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.15
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.15
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.15
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.14
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.05
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.05
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.98
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.97
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.97
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.96
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.87
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.87
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.85
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.82
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.81
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.8
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.79
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.75
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.74
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.68
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.67
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.67
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.57
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.56
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.54
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	95.5
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.48
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	95.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.39
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	95.38
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.38
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.3
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.28
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.28
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.28
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.27
2csu_A	457	457AA long hypothetical protein; structural genomi	95.23
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.2
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.18
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.18
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.14
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.07
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.97
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	94.89
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.84
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.82
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.8
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.76
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.75
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.73
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.69
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.66
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.62
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.62
3dme_A	369	Conserved exported protein; structural genomics, P	94.61
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.61
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.61
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.58
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.58
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.56
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.52
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.5
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.49
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	94.48
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.48
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.47
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	94.45
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.43
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.4
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.39
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.37
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.34
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.31
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.26
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.26
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	94.23
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.19
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.18
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.17
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	94.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.16
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.15
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.14
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.14
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	94.11
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	94.07
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	94.03
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.03
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.01
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.98
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	93.98
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.98
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.97
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.92
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.87
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.87
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.76
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.74
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	93.71
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.68
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	93.66
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	93.64
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.64
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.64
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.63
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.61
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.6
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.6
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.53
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.47
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.47
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.47
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	93.46
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.46
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.44
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.4
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	93.39
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.38
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	93.38
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.35
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.34
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.31
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.29
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.29
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.27
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.23
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.23
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.22
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.16
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.14
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.11
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.11
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	93.11
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.08
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.04
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.04
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.02
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.02
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.01
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	92.99
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.98
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	92.97
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	92.93
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	92.92
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.91
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	92.89
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.88
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.84
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.83
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.83
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.81
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.77
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	92.77
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	92.76

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=100.00  E-value=1.2e-54  Score=437.00  Aligned_cols=289  Identities=32%  Similarity=0.523  Sum_probs=277.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.|.+.+|+|+..++.++.+++|++++++++|+||+|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG--QKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence            589999999999999999999998  999999999999999999998889999999999999999999999999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~  286 (420)
                      ||+++++++++++.++++++++||+++||+++++ ..+++.+.+.++.  .++++++||+++.++..+.++.+++++.+.
T Consensus       107 Vp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~  183 (356)
T 3k96_A          107 VPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNS  183 (356)
T ss_dssp             CCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence            9999999999999999999999999999999988 8899999998874  467899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                      +..++++++|+..+++++.++|+.|++|++++||++++++|+++++++++|...++++++++|+.++++++|++++||++
T Consensus       184 ~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~g  263 (356)
T 3k96_A          184 QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG  263 (356)
T ss_dssp             HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      ++|+||+++||++.+||||++|+.|++|++++++++++++++||+.|++++++|
T Consensus       264 l~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~l  317 (356)
T 3k96_A          264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHAL  317 (356)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHH
T ss_pred             cchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999874

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-55  Score=444.71  Aligned_cols=290  Identities=27%  Similarity=0.379  Sum_probs=264.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCC------CeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQ------LKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~------~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      +..||+|||+|+||+++|..|+++|++      ++|++|.|+++     ..+.|++.|.|.+|||++.||+++.+++|++
T Consensus        33 ~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~  112 (391)
T 4fgw_A           33 KPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLI  112 (391)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHH
Confidence            356999999999999999999998721      25999999865     4678999999999999999999999999999


Q ss_pred             HhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCeEEEECcccHHHHh
Q 014700          195 TALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELM  272 (420)
Q Consensus       195 eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t--~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~  272 (420)
                      ++++++|+||++||++.++++++++.++++++.++|+++||++..+  ...+++++.+.++.   ++++++||+|+.|++
T Consensus       113 ~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~---~~~vLsGPs~A~EVa  189 (391)
T 4fgw_A          113 DSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI---QCGALSGANIATEVA  189 (391)
T ss_dssp             HHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC---EEEEEECSCCHHHHH
T ss_pred             HHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc---cceeccCCchHHHhh
Confidence            9999999999999999999999999999999999999999998654  36789999998874   578999999999999


Q ss_pred             hcCCeEEEEecCCHH---------HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014700          273 NKLPTAMVVASKDRK---------LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV  343 (420)
Q Consensus       273 ~g~~t~i~ia~~d~e---------~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~  343 (420)
                      ++.|+.+++++.+.+         ..+.++++|.+.+|++|.++|++|+|+++++||++|+++|+++|+++|+|+.++++
T Consensus       190 ~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALi  269 (391)
T 4fgw_A          190 QEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQ  269 (391)
T ss_dssp             TTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence            999999999875432         35789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHc---CCChhhhhhccccchhhhhhcccCCCCccccccccC-CCChHHHHHHc--CCcccccchhhhh
Q 014700          344 AQGCSEIRWLATKM---GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSSM--NQVLVNPSMQPLL  417 (420)
Q Consensus       344 ~~~~~E~~~lA~a~---Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~-g~~~~~~~~~~--~~~~eG~~t~~~~  417 (420)
                      +++++||.+|+.++   |.++.+|.+++|+|||++||++  ||||++|+.|++ |++++++++++  +|++||+.|++.+
T Consensus       270 trGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v  347 (391)
T 4fgw_A          270 RVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEV  347 (391)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHH
Confidence            99999999999999   5556667799999999999998  999999999994 99999999998  8999999999999


Q ss_pred             hcC
Q 014700          418 GKL  420 (420)
Q Consensus       418 ~~~  420 (420)
                      ++|
T Consensus       348 ~~l  350 (391)
T 4fgw_A          348 HEW  350 (391)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=100.00  E-value=2.1e-39  Score=327.45  Aligned_cols=289  Identities=25%  Similarity=0.396  Sum_probs=261.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG-----~~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      +|||+|||+|+||++||..|+++|     ++++|++|+|+++     +++.+++.+.+..|+++..++.++.++++++++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            579999999999999999999876     1168999999988     889999888888888888888888998999888


Q ss_pred             ccCCcEEEEccChhhHHHHHHHhhh----cCCCCCeEEEeccCCCc--chhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          197 LLGADYCLHAMPVQFSSSFLEGISD----YVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       197 l~~aDiVIlaVp~~~l~~vl~~i~~----~l~~~~iVVs~snGi~~--~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      ++++|+||+|||+++++++++++.+    .++++++||+++||+.+  ++.+.+++.+.+.++   .++.++.||+++.+
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~  177 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGANIAMD  177 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECSCCHHH
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCCchHHH
Confidence            8999999999999999999999998    89999999999999987  344567788877665   35778999999999


Q ss_pred             HhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 014700          271 LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (420)
Q Consensus       271 v~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~  350 (420)
                      +..+.++.+++++.+.+..++++++|+..+++++.++|+.+++|++++||++++++|+..++++++|...+++.++++|+
T Consensus       178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~  257 (375)
T 1yj8_A          178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM  257 (375)
T ss_dssp             HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence            88888887778888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc--CCChhhhhhccccchhhhhhcccCCCCccccccccC-C--CChHHHHHHc--CCcccccchhhhhhcC
Q 014700          351 RWLATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-G--EKLDDILSSM--NQVLVNPSMQPLLGKL  420 (420)
Q Consensus       351 ~~lA~a~--Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~-g--~~~~~~~~~~--~~~~eG~~t~~~~~~~  420 (420)
                      .++++++  |++++++++++|+||++.||.+  +||+.+|..+++ |  .+++++.+++  ++..||..+++++.++
T Consensus       258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~--~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~  332 (375)
T 1yj8_A          258 ILFGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHM  332 (375)
T ss_dssp             HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS--SSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcchhhccccccceeEeeeC--CccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHH
Confidence            9999999  6999999999999999999987  799999999988 8  7899998877  9999999999988753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=100.00  E-value=1.3e-38  Score=320.28  Aligned_cols=289  Identities=34%  Similarity=0.531  Sum_probs=257.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|+||++||..|+++|  ++|++|+|++++++.+++.+.+..++++..++.++.++++++++++++|+||+|
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVila   92 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   92 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEEC
Confidence            349999999999999999999998  999999999999999998887777777777777888888998888999999999


Q ss_pred             cChhhHHHHHHH----hhhcCCC-CCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          207 MPVQFSSSFLEG----ISDYVDP-GLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       207 Vp~~~l~~vl~~----i~~~l~~-~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      ||++++++++++    +.+++++ +++||+++||+.+++.+.+.+.+.+.++.  ....++.||+++.++..+.++.+++
T Consensus        93 v~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~--~~~~v~~gp~~~~~~~~g~~~~~~~  170 (366)
T 1evy_A           93 IPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSI  170 (366)
T ss_dssp             CCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             CChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCC--CcEEEEeCCChHHHHHhCCceEEEE
Confidence            999999999998    9888888 89999999999987666677777665553  2467899999999888888777777


Q ss_pred             ecCCHHHHHHHHHHHhcC--CceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCC
Q 014700          282 ASKDRKLANAVQQLLASK--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~--g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi  359 (420)
                      ++.+.+..++++++|+..  +++++.++|+.+.+|+++++|+++++.|+..++++++|...+++..+++|+.++++++|+
T Consensus       171 ~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi  250 (366)
T 1evy_A          171 ASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGG  250 (366)
T ss_dssp             ECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            888888899999999999  999999999999999999999999999999999999999899999999999999999999


Q ss_pred             ChhhhhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhc
Q 014700          360 KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGK  419 (420)
Q Consensus       360 ~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~  419 (420)
                      +++++.++++.+|++.+|.+..+||+++|..+.+|++++++..+.+++.||.....++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~  310 (366)
T 1evy_A          251 DGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMR  310 (366)
T ss_dssp             CCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHH
T ss_pred             CCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHH
Confidence            999999999999999999988899999999999999999988888889999888877654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=100.00  E-value=7.5e-38  Score=311.40  Aligned_cols=278  Identities=37%  Similarity=0.513  Sum_probs=249.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .|||+|||+|+||++||..|+++|  ++|++|+|++++++.+++.|.+. |+++..+  ++.+++++++ ++++|+||+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~--~~~~~~~~~~-~~~aDvVil~   87 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENG--EEVILWARRKEIVDLINVSHTSP-YVEESKI--TVRATNDLEE-IKKEDILVIA   87 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHSCBT-TBTTCCC--CSEEESCGGG-CCTTEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCCcc-cCCCCee--eEEEeCCHHH-hcCCCEEEEE
Confidence            589999999999999999999998  99999999999999999988666 6776655  5778888888 8899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCH
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~  286 (420)
                      ||+++++++++++.+   ++++||+++||+++++.+.+++.+.+.++   ....++.+|+++.++..+.++.+++++.+ 
T Consensus        88 vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-  160 (335)
T 1z82_A           88 IPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN-  160 (335)
T ss_dssp             SCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT-
T ss_pred             CCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh-
Confidence            999999999988876   68999999999998766778888877654   35688999999999888887766777655 


Q ss_pred             HHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                        .++++++|+..+++++.++|+.+.+|+|+++|+++++.|+..++++++|...+++..++.|+.++++++|++++++.+
T Consensus       161 --~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~  238 (335)
T 1z82_A          161 --SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG  238 (335)
T ss_dssp             --HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             --HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence              789999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             ccccchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhhhc
Q 014700          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGK  419 (420)
Q Consensus       367 l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~  419 (420)
                      +++.+|++.+|.+..+||+++|..+.+|++++++.++.++++||....+++.+
T Consensus       239 l~~~~~~~~t~~s~~~~n~~~~~~~~~g~~~~~~~~~~g~~~e~~~~~~~v~~  291 (335)
T 1z82_A          239 LAGIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMK  291 (335)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHTCSSCCTHHHHHHHHHH
T ss_pred             cccccceeeeccCccCcHHHHHHHHhCCCCHHHHHHhcCCeeeHHHHHHHHHH
Confidence            99999999999998899999999999999999998889999999998877754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=100.00  E-value=1.4e-37  Score=310.71  Aligned_cols=288  Identities=30%  Similarity=0.482  Sum_probs=256.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-----CCeEEEEeCCHH-----HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-----~~~V~l~~r~~~-----~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      +|||+|||+|+||+++|..|+++|.     +++|++|+|+++     +.+.+++.+.+..++++..++.++.++++++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            4799999999999999999998751     168999999988     888998877777777777777788888899888


Q ss_pred             ccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc
Q 014700          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (420)
Q Consensus       197 l~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~--~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g  274 (420)
                      ++++|+||+|||++.++++++++.++++++++||+++||+..  ++.+.+.+.+.+.++   .+..++.||+++.++..+
T Consensus        88 ~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g  164 (354)
T 1x0v_A           88 AEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG---IPMSVLMGANIASEVADE  164 (354)
T ss_dssp             HTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTT
T ss_pred             HcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC---CCEEEEECCCcHHHHHhc
Confidence            899999999999999999999999999999999999999984  444567777777665   357789999999988888


Q ss_pred             CCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 014700          275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA  354 (420)
Q Consensus       275 ~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA  354 (420)
                      .++.+++++.+.+..++++++|+..+++++.++|+.+.+|+++++|+++++.|+..++++++|...+++.++++|+.++|
T Consensus       165 ~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la  244 (354)
T 1x0v_A          165 KFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA  244 (354)
T ss_dssp             CCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence            87777788888889999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHcCC---ChhhhhhccccchhhhhhcccCCCCccccccccC-CCChHHHHHHc--CCcccccchhhhhhc
Q 014700          355 TKMGA---KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSSM--NQVLVNPSMQPLLGK  419 (420)
Q Consensus       355 ~a~Gi---~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~-g~~~~~~~~~~--~~~~eG~~t~~~~~~  419 (420)
                      +++|+   +++++++++|++|++.+|.+  +||+++|..+.+ |++++++.+++  ++..||...+.++.+
T Consensus       245 ~a~G~~~~~~~~~~~~~g~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~  313 (354)
T 1x0v_A          245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYS  313 (354)
T ss_dssp             HHHSSSCCCGGGGGSTTTHHHHHHHHHH--CHHHHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHhcCCCCCcccccccchHHHHHHhhcc--cccHHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHH
Confidence            99999   99999999999999999986  899999999887 89999998876  899999999988765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=100.00  E-value=1.5e-33  Score=278.66  Aligned_cols=283  Identities=23%  Similarity=0.329  Sum_probs=240.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r--~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiV  203 (420)
                      |||+|||+|+||+++|..|+++|  ++|++|+|  ++++++.+++.+.+..+  +..+ .++.+++  +++++++++|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL--GVKL-NGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT--TBCC-CSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHhCcCccc--Cccc-cceEEecHHhHHHHHhcCCEE
Confidence            69999999999999999999998  89999999  99999999887654333  2223 4456776  787888999999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC---CcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL---ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi---~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      |+|||++.++++++++.+ ++++++||+++||+   .+++.+.+.+.+.+.+|.. ....++.||+++.+...+.++.++
T Consensus        76 i~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~  153 (335)
T 1txg_A           76 LLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVV  153 (335)
T ss_dssp             EECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEE
T ss_pred             EEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEE
Confidence            999999999999999999 98899999999999   6554456666665543421 246788999999888777777777


Q ss_pred             EecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHH
Q 014700          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLAT  355 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg-----~N~~~al~~~~~~E~~~lA~  355 (420)
                      +++.+.+..+.++++|+..+++++..+|+.+.+|.|+++|+..++.|+..+++++     +|...+++..+++|+.++++
T Consensus       154 ~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~  233 (335)
T 1txg_A          154 FSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIE  233 (335)
T ss_dssp             EECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            8887888899999999999999999999999999999999999999999888888     88888999999999999999


Q ss_pred             HcCCChhhhhhccccchhhhhhcccCCCCccccccccCCCChHHHHHHcC----Ccccccchhhhhhc
Q 014700          356 KMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN----QVLVNPSMQPLLGK  419 (420)
Q Consensus       356 a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~----~~~eG~~t~~~~~~  419 (420)
                      ++|+++++++++++++|++.+|.+  +||+.+|..++.|.+..+.+++++    ...|+.....++.+
T Consensus       234 ~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~  299 (335)
T 1txg_A          234 ILGGDRETAFGLSGFGDLIATFRG--GRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYR  299 (335)
T ss_dssp             HHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHCCCcchhhcccchhheeecccc--CccHHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHH
Confidence            999999999999999999998876  788888888888888887776656    77888887776654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.95  E-value=7.9e-28  Score=237.86  Aligned_cols=229  Identities=17%  Similarity=0.200  Sum_probs=180.9

Q ss_pred             hhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       122 ~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +.+..+|||+|||+|+||+++|..|+++|  ++|++| ++++.++.+++.|.+.. .++..++.++.+++++++ +.++|
T Consensus        14 ~~~~~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~D   88 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-ARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDPSA-VQGAD   88 (318)
T ss_dssp             ------CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCGGG-GTTCS
T ss_pred             hhhccCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-EcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHHH-cCCCC
Confidence            44556789999999999999999999998  999999 99999999998886554 345555556777888765 68999


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHH-HHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII-PQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l-~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      +||+|||+++++++++++.++++++++||+++||++.+  +.+.+.+ .+.++......+++.||+++.+...+.   +.
T Consensus        89 ~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~--~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~---~~  163 (318)
T 3hwr_A           89 LVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENA--DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGE---LV  163 (318)
T ss_dssp             EEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHH--HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEE---EE
T ss_pred             EEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcH--HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCce---EE
Confidence            99999999999999999999999999999999999874  2333443 222221111235678999988766553   33


Q ss_pred             EecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHHHHHHH
Q 014700          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN----SMAALVAQGCSEIRWLATK  356 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N----~~~al~~~~~~E~~~lA~a  356 (420)
                      +++  .+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.+...+.++|..    ....++.+++.|+.+++++
T Consensus       164 ig~--~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a  241 (318)
T 3hwr_A          164 IEP--TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARA  241 (318)
T ss_dssp             ECC--CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             EcC--CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHH
Confidence            555  3456889999999999999999999999999999999898888888876643    3468899999999999999


Q ss_pred             cCCChh
Q 014700          357 MGAKPA  362 (420)
Q Consensus       357 ~Gi~~~  362 (420)
                      +|++.+
T Consensus       242 ~G~~l~  247 (318)
T 3hwr_A          242 EGVKLP  247 (318)
T ss_dssp             TTCCCC
T ss_pred             cCCCCC
Confidence            999743

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.95  E-value=1.7e-27  Score=234.62  Aligned_cols=250  Identities=16%  Similarity=0.169  Sum_probs=185.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCC-CCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l-~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|++  .+.+++.|.+..+. +++.++ ++.+++++++ +.++|+||+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~-~~~~~~~~~~-~~~~D~vil   75 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSG--EDVHFLLRRD--YEAIAGNGLKVFSINGDFTLP-HVKGYRAPEE-IGPMDLVLV   75 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTS--CCEEEECSTT--HHHHHHTCEEEEETTCCEEES-CCCEESCHHH-HCCCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEe-eceeecCHHH-cCCCCEEEE
Confidence            479999999999999999999998  8999999986  37888877654432 223332 4556778766 689999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAM  279 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i  279 (420)
                      |||+++++++++++.++++++++||+++||++..      +.+.+.++...      ...+.+.||+++.+...   ..+
T Consensus        76 avk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~---g~~  146 (312)
T 3hn2_A           76 GLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGA---GRI  146 (312)
T ss_dssp             CCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEE---EEE
T ss_pred             ecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCC---CeE
Confidence            9999999999999999999999999999999854      23444444210      01123456887765432   345


Q ss_pred             EEec---CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHH
Q 014700          280 VVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRW  352 (420)
Q Consensus       280 ~ia~---~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~  352 (420)
                      .++.   .+.+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.+...+..+|    ++....++.+++.|+.+
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~  226 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA  226 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence            5654   2457789999999999999999999999999999999988888877777666    45678999999999999


Q ss_pred             HHHHcC--CChhhhhhccccchhhhhhcccCCCCcc-ccccccCCCC
Q 014700          353 LATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRT-VGVRLGSGEK  396 (420)
Q Consensus       353 lA~a~G--i~~~t~~~l~g~gdl~~t~~~~~sRn~~-~G~~l~~g~~  396 (420)
                      +++++|  ++.+     ....+.+.++....++|++ .-..+.+|+.
T Consensus       227 va~a~G~~~~~~-----~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~  268 (312)
T 3hn2_A          227 GANAQGLATFIA-----DGYVDDMLEFTDAMGEYKPSMEIDREEGRP  268 (312)
T ss_dssp             HHHTSCCSSCCC-----TTHHHHHHHHHTTSCSCCCHHHHHHHTTCC
T ss_pred             HHHHcCCccCCC-----HHHHHHHHHHHhcCCCCCchHHHHHHhCCC
Confidence            999999  7653     2344555555444455532 2233445544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.94  E-value=2.2e-26  Score=227.41  Aligned_cols=220  Identities=15%  Similarity=0.180  Sum_probs=169.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCC--CCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR--YFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~--~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|+||+++|..|+++|  ++|++|+|++  .+.+++.|+...  +.+++.++ ++.++++++++.+++|+||
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~-~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTG--HCVSVVSRSD--YETVKAKGIRIRSATLGDYTFR-PAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTT--CEEEEECSTT--HHHHHHHCEEEEETTTCCEEEC-CSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEe-eeeeECCHHHcCCCCCEEE
Confidence            479999999999999999999998  9999999987  378888765322  44555443 4566778877656899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccH-------HHHhhcCCe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA-------LELMNKLPT  277 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a-------~ev~~g~~t  277 (420)
                      +|||+++++++++++.++++++++||+++||++..      +.+.+.++..    .++.|+.+.       .++....+.
T Consensus        77 lavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~------~~l~~~~~~~----~vl~g~~~~~a~~~~pg~v~~~~~~  146 (320)
T 3i83_A           77 LCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE------PEVAAAFPDN----EVISGLAFIGVTRTAPGEIWHQAYG  146 (320)
T ss_dssp             ECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS------HHHHHHSTTS----CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH------HHHHHHCCCC----cEEEEEEEeceEEcCCCEEEECCCC
Confidence            99999999999999999999999999999999864      3455666542    244454443       222223344


Q ss_pred             EEEEec---CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHH
Q 014700          278 AMVVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEI  350 (420)
Q Consensus       278 ~i~ia~---~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~  350 (420)
                      .+.++.   .+.+.++.++++|+..+++++.++|+.+.+|.|+++|+..+......+...+    ++. ..++.+++.|+
T Consensus       147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~-~~l~~~~~~E~  225 (320)
T 3i83_A          147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQ-EGFVRAIMQEI  225 (320)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHC-HHHHHHHHHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcH-HHHHHHHHHHH
Confidence            556653   4457789999999999999999999999999999999755555544444333    333 78999999999


Q ss_pred             HHHHHHcCCChh
Q 014700          351 RWLATKMGAKPA  362 (420)
Q Consensus       351 ~~lA~a~Gi~~~  362 (420)
                      .++++++|++.+
T Consensus       226 ~~va~a~G~~l~  237 (320)
T 3i83_A          226 RAVAAANGHPLP  237 (320)
T ss_dssp             HHHHHHTTCCCC
T ss_pred             HHHHHHcCCCCC
Confidence            999999999854

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.93  E-value=2.4e-26  Score=228.57  Aligned_cols=229  Identities=16%  Similarity=0.166  Sum_probs=175.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|+ +..+.+++.|.+... ++..++.++.+++++++ +.++|+||+|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAG--EAINVLARG-ATLQALQTAGLRLTE-DGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH-HHHHHHHHTCEEEEE-TTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh-HHHHHHHHCCCEEec-CCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            589999999999999999999998  899999996 678888887765432 33333445677788877 5899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCC--------cchhhh-----HHHHHHHHhCCCC------CCeEEEECccc
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE--------LNTLRM-----MSQIIPQALRNPR------QPFIALSGPSF  267 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~--------~~t~~~-----~se~l~~~lg~~~------~~~~vl~GP~~  267 (420)
                      ||+++++++++++.++++++++||+++||++        +.+...     ..+.+.+.++...      ...+.+.+|++
T Consensus        78 vk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg~  157 (335)
T 3ghy_A           78 VKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPGH  157 (335)
T ss_dssp             CCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTTE
T ss_pred             CCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCcE
Confidence            9999999999999999999999999999974        111111     1124445544311      11245678888


Q ss_pred             HHHHhhcCCeEEEEec---CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHH----HHHHHHHHHHHhcccchhHHH
Q 014700          268 ALELMNKLPTAMVVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK----NVLAIAAGIVVGMNLGNNSMA  340 (420)
Q Consensus       268 a~ev~~g~~t~i~ia~---~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alk----Nv~Ai~~G~~~gl~lg~N~~~  340 (420)
                      +.+...+   .+.++.   .+.+.++.++++|+..+++++.++|+.+..|.|++.    |++++..|+..+..++++...
T Consensus       158 v~~~~~g---~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~  234 (335)
T 3ghy_A          158 IRHGNGR---RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVS  234 (335)
T ss_dssp             EEECSCC---EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHH
T ss_pred             EEECCCC---eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHH
Confidence            7654322   345553   345778999999999999999999999999998764    566677776666666778888


Q ss_pred             HHHHHHHHHHHHHHHHcCCChhh
Q 014700          341 ALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       341 al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      +++.++++|+.++++++|++++.
T Consensus       235 ~l~~~~~~E~~~va~a~G~~~~~  257 (335)
T 3ghy_A          235 AFCLAVMAEAKAIGARIGCPIEQ  257 (335)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCCS
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999998643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.93  E-value=1.5e-25  Score=218.70  Aligned_cols=256  Identities=15%  Similarity=0.094  Sum_probs=181.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDiV  203 (420)
                      ||||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.|....+.++ .++.++.+++ .+++.   +++|+|
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~d~v   78 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQWPAHIEAIRKNGLIADFNGE-EVVANLPIFS-PEEIDHQNEQVDLI   78 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHCEEEEETTE-EEEECCCEEC-GGGCCTTSCCCSEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhCCEEEEeCCC-eeEecceeec-chhhcccCCCCCEE
Confidence            689999999999999999999998  8999999999999999887644322211 1111233333 23333   389999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCeEEEECcccHHHHhhcCCe
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPT  277 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~------~~~~~vl~GP~~a~ev~~g~~t  277 (420)
                      |+|||++.++++++++.++++++++||+++||+...      +.+.+.++..      ....+.+.||+.+.+...+...
T Consensus        79 i~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~  152 (316)
T 2ew2_A           79 IALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHE------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIE  152 (316)
T ss_dssp             EECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTH------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEE
T ss_pred             EEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcH------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEE
Confidence            999999999999999999999999999999998742      2333333221      0112246678766554444433


Q ss_pred             EEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc---hhH-HHHHHHHHHHHHHHH
Q 014700          278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---NNS-MAALVAQGCSEIRWL  353 (420)
Q Consensus       278 ~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg---~N~-~~al~~~~~~E~~~l  353 (420)
                      .....+.+.+..+.++++|+..|+.++..+|+...+|.|+++|++..+.+...+...+   .|. ...++.+++.|+..+
T Consensus       153 i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~l  232 (316)
T 2ew2_A          153 LENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAV  232 (316)
T ss_dssp             EEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred             EeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            2223455778889999999999999999999999999999999877766665555322   233 347889999999999


Q ss_pred             HHHcCCChhhhhhccccchhhhhhcccC--CCCcc-ccccc-cCCCC
Q 014700          354 ATKMGAKPATITGLSGTGDIMLTCFVNL--SRNRT-VGVRL-GSGEK  396 (420)
Q Consensus       354 A~a~Gi~~~t~~~l~g~gdl~~t~~~~~--sRn~~-~G~~l-~~g~~  396 (420)
                      ++++|++++    ...+.|++.+|.+..  ++|++ +...+ .+|..
T Consensus       233 a~~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~  275 (316)
T 2ew2_A          233 AEKEAIYLD----QAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRL  275 (316)
T ss_dssp             HHHTTCCCC----HHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCC
T ss_pred             HHHcCCCCC----hHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCc
Confidence            999999873    234556666665544  56654 44445 55543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.93  E-value=8.2e-25  Score=225.60  Aligned_cols=223  Identities=17%  Similarity=0.186  Sum_probs=187.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~~  199 (420)
                      ..+|+|||+|+||+++|..|+++|  |+|++|||++++++.+++ +.++.|+|+..       .+.++++++|+++++++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~kv~~l~~-g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~   84 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARKIELLHQ-NVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD   84 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHTT-TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHhc-CCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc
Confidence            468999999999999999999999  999999999999999987 56777888764       35678999999999999


Q ss_pred             CcEEEEccChh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccH
Q 014700          200 ADYCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA  268 (420)
Q Consensus       200 aDiVIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a  268 (420)
                      ||+||+|||+.           +++++++++.++++++++||..+ ++.+.+.+.+.+.+.+..+.  .++.++++|.++
T Consensus        85 aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~--~d~~v~~~Pe~a  161 (446)
T 4a7p_A           85 ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPN--SGAKVVSNPEFL  161 (446)
T ss_dssp             CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTT--SCCEEEECCCCC
T ss_pred             CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCC--CCceEEeCcccc
Confidence            99999998854           59999999999999999999887 79998888888888776443  467899999998


Q ss_pred             HHHhh----cCCeEEEEecCCHHHHHHHHHHHhcCCce---EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 014700          269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (420)
Q Consensus       269 ~ev~~----g~~t~i~ia~~d~e~~~~l~~ll~~~g~~---v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~a  341 (420)
                      .+...    ..++.+++++.+++..++++++|+..+..   ++...|+.+.|+.|                 +.+|...+
T Consensus       162 ~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~K-----------------l~~N~~~a  224 (446)
T 4a7p_A          162 REGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIK-----------------YAANAFLA  224 (446)
T ss_dssp             CTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHH-----------------HHHHHHHH
T ss_pred             cccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHH-----------------HHHHHHHH
Confidence            76432    46667778887888999999999876543   46777887777654                 56778888


Q ss_pred             HHHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGD  372 (420)
Q Consensus       342 l~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd  372 (420)
                      +..++++|+..+|+++|+|++++++..+...
T Consensus       225 ~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~~  255 (446)
T 4a7p_A          225 VKITFINEIADLCEQVGADVQEVSRGIGMDN  255 (446)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Confidence            9999999999999999999999999876553

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.92  E-value=4.7e-24  Score=220.47  Aligned_cols=224  Identities=18%  Similarity=0.181  Sum_probs=184.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC--C-----CCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~--l-----~~~i~a~td~~eal~~a  200 (420)
                      |||+|||+|.||.++|..|+++|  ++|++||+++++++.+++ +....+.++..  +     ..++.+++|+++++++|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~~v~~l~~-g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRNKIEQLNS-GTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-TCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHc-CCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            79999999999999999999998  999999999999999988 55556666543  1     45688999999999999


Q ss_pred             cEEEEccChh----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECcccH
Q 014700          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFA  268 (420)
Q Consensus       201 DiVIlaVp~~----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP~~a  268 (420)
                      |+||+|||+.          +++++++++.++++++++||..+ ++.+.+.+.+.+.+.+..+..  ...+.+.++|.++
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a  158 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFL  158 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEechhhh
Confidence            9999999977          89999999999999999999888 488887777888777653211  1357899999998


Q ss_pred             HHHhh----cCCeEEEEecCCHHHHHHHHHHHhcCCc--eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 014700          269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL  342 (420)
Q Consensus       269 ~ev~~----g~~t~i~ia~~d~e~~~~l~~ll~~~g~--~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al  342 (420)
                      .+...    ..++.+++++.+++..++++++|+..+.  ..+...|+.+.|+.|                 +.+|...++
T Consensus       159 ~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~K-----------------l~~N~~~a~  221 (450)
T 3gg2_A          159 KEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTK-----------------YAANAMLAT  221 (450)
T ss_dssp             CTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHH-----------------HHHHHHHHH
T ss_pred             cccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHH-----------------HHHHHHHHH
Confidence            76322    4566677888888999999999997654  245677888777754                 567888899


Q ss_pred             HHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700          343 VAQGCSEIRWLATKMGAKPATITGLSGTGD  372 (420)
Q Consensus       343 ~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd  372 (420)
                      ..++++|+..+|+++|+|++++++..+...
T Consensus       222 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~  251 (450)
T 3gg2_A          222 RISFMNDVANLCERVGADVSMVRLGIGSDS  251 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHcCCC
Confidence            999999999999999999999999877653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.91  E-value=1.1e-23  Score=219.20  Aligned_cols=242  Identities=21%  Similarity=0.211  Sum_probs=188.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC--C-----CCceEEeCCHHHhcc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALL  198 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~--l-----~~~i~a~td~~eal~  198 (420)
                      ..|||+|||+|+||+++|..|+++|  |+|++||+++++++.+++.+ ...+.++..  +     ..++.+++|++++++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~~v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~   83 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQAKIDILNNGG-VPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA   83 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhcccCCEEEECCHHHHhh
Confidence            3689999999999999999999999  99999999999999999865 445555532  1     245789999988889


Q ss_pred             CCcEEEEccCh----------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCeEEEECcc
Q 014700          199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPFIALSGPS  266 (420)
Q Consensus       199 ~aDiVIlaVp~----------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l--g~~~~~~~vl~GP~  266 (420)
                      +||+||+|||+          .++++++++|.++++++++||..+ ++.+.+.+.+.+.+.+.+  |.....+.+.++|.
T Consensus        84 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe  162 (478)
T 2y0c_A           84 HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPE  162 (478)
T ss_dssp             HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCC
T ss_pred             cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEEChh
Confidence            99999999998          789999999999999999998877 788877777777777653  21003567899999


Q ss_pred             cHHHHhh----cCCeEEEEecCCH----HHHHHHHHHHhcCCc--eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccch
Q 014700          267 FALELMN----KLPTAMVVASKDR----KLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN  336 (420)
Q Consensus       267 ~a~ev~~----g~~t~i~ia~~d~----e~~~~l~~ll~~~g~--~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~  336 (420)
                      ++.+...    +.+..+++++.++    +..++++++|+....  .++...|+...+|.|++                 .
T Consensus       163 ~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~-----------------~  225 (478)
T 2y0c_A          163 FLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYA-----------------A  225 (478)
T ss_dssp             CCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHH-----------------H
T ss_pred             hhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHH-----------------H
Confidence            8865322    4555567777655    788999999987332  47788899999998754                 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCccccccccCC
Q 014700          337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG  394 (420)
Q Consensus       337 N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g  394 (420)
                      |...++....++|+..+|+++|++++++.+..+...      ....+++.+|+.++..
T Consensus       226 N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~~~------rig~~~~~pG~g~gg~  277 (478)
T 2y0c_A          226 NAMLATRISFMNELANLADRFGADIEAVRRGIGSDP------RIGYHFLYAGCGYGGS  277 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST------TTCSTTCCCSSCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCC------ccCcccCCCCcccccC
Confidence            556778889999999999999999998886554221      1123567778766544

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.91  E-value=2.5e-24  Score=210.72  Aligned_cols=224  Identities=14%  Similarity=0.094  Sum_probs=167.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc-----CCCCeEEEEeCCHHHHHHHHH-hcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a-----G~~~~V~l~~r~~~~~~~i~~-~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      +|||+|||+|+||+++|..|+++     | .++|++|+| +++++.+++ .|......++.....++.++++.+ .+.++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g-~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~   84 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDG-LLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-EVGTV   84 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTS-SEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHH-HHCCE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCC-CCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcc-ccCCC
Confidence            37999999999999999999987     6 269999999 888899988 665433222221122345666664 46899


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC------CeEEEECcccHHHHhhc
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFALELMNK  274 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~------~~~vl~GP~~a~ev~~g  274 (420)
                      |+||+|||++.++++++++.+.++++++||+++||+...      +.+.+.++....      ..+.+.+|+...+...+
T Consensus        85 D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g  158 (317)
T 2qyt_A           85 DYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADR  158 (317)
T ss_dssp             EEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCC
Confidence            999999999999999999999888889999999998642      345555543110      12344556554332222


Q ss_pred             CCeEEEEecC----CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHH
Q 014700          275 LPTAMVVASK----DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS--MAALVAQGCS  348 (420)
Q Consensus       275 ~~t~i~ia~~----d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~--~~al~~~~~~  348 (420)
                        ...++++.    +.+.. .++++|+..|+.+++.+|+...+|.|+++|+...+.+...+...+.+.  ...++.++++
T Consensus       159 --~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~  235 (317)
T 2qyt_A          159 --ELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLE  235 (317)
T ss_dssp             --EEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHH
T ss_pred             --ceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence              22325432    46667 899999999999999999999999999999988887777777666543  3478889999


Q ss_pred             HHHHHHHHcCCChh
Q 014700          349 EIRWLATKMGAKPA  362 (420)
Q Consensus       349 E~~~lA~a~Gi~~~  362 (420)
                      |+.++++++|++++
T Consensus       236 E~~~v~~a~G~~~~  249 (317)
T 2qyt_A          236 EVAELFRAKYGQVP  249 (317)
T ss_dssp             HHHHHHHHHTSCCC
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999875

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.91  E-value=2.6e-23  Score=204.23  Aligned_cols=225  Identities=16%  Similarity=0.192  Sum_probs=169.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+||+|||+|.||.+||.+|.++|  |+|++|||++++++.+.+.|              .+..++++|+++.+|+||+|
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~a~s~~e~~~~~dvv~~~   66 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAG--------------ASAARSARDAVQGADVVISM   66 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEECSSHHHHHTTCSEEEEC
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHcC--------------CEEcCCHHHHHhcCCceeec
Confidence            679999999999999999999999  99999999999999998865              35667899999999999999


Q ss_pred             cCh-hhHHHHHHH---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPV-QFSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~-~~l~~vl~~---i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +|. .++++++..   +.+.++++++||.+++ +.+++.+.+.+.+.+. |     +.++.+|...........+..++.
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT-~~p~~~~~~a~~~~~~-G-----~~~lDaPVsGg~~~A~~G~L~imv  139 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARER-G-----LAMLDAPVSGGTAGAAAGTLTFMV  139 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-CEEEECSC-CCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CEEEecCCCCCHHHHHhCCEEEEE
Confidence            995 568888865   6677889999999986 6776656666666543 3     345666654433222223445566


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +++++.+++++++|+..+-++++..+. |                ....+|+.+|........++.|...++++.|++++
T Consensus       140 GG~~~~~~~~~p~l~~~g~~i~~~G~~-G----------------~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~  202 (300)
T 3obb_A          140 GGDAEALEKARPLFEAMGRNIFHAGPD-G----------------AGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAK  202 (300)
T ss_dssp             ESCHHHHHHHHHHHHHHEEEEEEEEST-T----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEeCCc-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            778999999999999999888888775 2                22344566778888888999999999999999999


Q ss_pred             hhhhcc--ccch---hhhhh-------cccCCCCccccccc
Q 014700          363 TITGLS--GTGD---IMLTC-------FVNLSRNRTVGVRL  391 (420)
Q Consensus       363 t~~~l~--g~gd---l~~t~-------~~~~sRn~~~G~~l  391 (420)
                      ++++..  +.+.   +....       .....|+|..||.+
T Consensus       203 ~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~  243 (300)
T 3obb_A          203 VLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMA  243 (300)
T ss_dssp             HHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBH
T ss_pred             HHHHHHHhCcccchHHHhhccccchhhhccccccCCccchH
Confidence            998842  2221   11111       12346788888865

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.89  E-value=4.3e-23  Score=214.91  Aligned_cols=243  Identities=12%  Similarity=0.093  Sum_probs=174.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDi  202 (420)
                      ..|||+|||+|.||++||..|+++|  ++|++|+|++++++.+.+...      +    .++..++++++++++   +|+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~~r~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRG--YTVSIFNRSREKTEEVIAENP------G----KKLVPYYTVKEFVESLETPRR   81 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHST------T----SCEEECSSHHHHHHTBCSSCE
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHhhCC------C----CCeEEeCCHHHHHhCCCCCCE
Confidence            4579999999999999999999998  899999999999998887531      0    246677889888776   999


Q ss_pred             EEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH-hhcCCeEEE
Q 014700          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL-MNKLPTAMV  280 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev-~~g~~t~i~  280 (420)
                      ||+|||+ ..++++++++.+.++++++||+++||....+ ..+.+.+.+. |     +.++.+|....+. +...+ .++
T Consensus        82 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t-~~l~~~l~~~-g-----~~~v~~pv~gg~~~a~~g~-~i~  153 (480)
T 2zyd_A           82 ILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDT-IRRNRELSAE-G-----FNFIGTGVSGGEEGALKGP-SIM  153 (480)
T ss_dssp             EEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-T-----CEEEEEEEESHHHHHHHCC-EEE
T ss_pred             EEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHC-C-----CCeeCCccccCHhHHhcCC-eEE
Confidence            9999998 5899999999999999999999999876543 2334555442 2     2233444433322 22233 344


Q ss_pred             EecCCHHHHHHHHHHHhcCCce-------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 014700          281 VASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL  353 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~-------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~l  353 (420)
                      . +.+++..++++++|+..+..       +.+..+                 .|....+|+.+|....++.+++.|+.++
T Consensus       154 ~-gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~-----------------~G~g~~~Kl~~N~~~~~~~~~laEa~~l  215 (480)
T 2zyd_A          154 P-GGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA-----------------DGAGHYVKMVHNGIEYGDMQLIAEAYSL  215 (480)
T ss_dssp             E-ESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBS-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e-cCCHHHHHHHHHHHHHHhccccCCCceEEEECC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 45788899999999987765       333333                 1344556677888888999999999999


Q ss_pred             HHH-cCCChhhhhhcc-----c-cchhhhhhcccCCCCccccccccCCCChHHHHHHcCCcccc
Q 014700          354 ATK-MGAKPATITGLS-----G-TGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVN  410 (420)
Q Consensus       354 A~a-~Gi~~~t~~~l~-----g-~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG  410 (420)
                      +++ +|++++++.++.     | .++++.+|++...|++.+    ..|..++.+.+..++..+|
T Consensus       216 ~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~----~~~~~v~~i~D~~~~k~tG  275 (480)
T 2zyd_A          216 LKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDE----DGNYLVDVILDEAANKGTG  275 (480)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCT----TSSBGGGGBCCCCCCCSCT
T ss_pred             HHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCC----CCcchHHHHHHHhcCchHH
Confidence            999 799999998865     5 788888888765544333    1223344444334444444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.89  E-value=1.5e-23  Score=204.70  Aligned_cols=209  Identities=13%  Similarity=0.114  Sum_probs=153.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|+++.++.   ..     ..+ ..+..+.  .++.+++ +++|+||+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~~~~~~---~~-----~~g-~~~~~~~--~~~~~~~~~~~D~vil   68 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHAKTITY---YT-----VPH-APAQDIV--VKGYEDVTNTFDVIII   68 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSCEEEEE---ES-----STT-SCCEEEE--EEEGGGCCSCEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeccCcEEE---Ee-----cCC-eecccee--cCchHhcCCCCCEEEE
Confidence            489999999999999999999998  899999998643211   00     011 1222232  2444544 78999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~--~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |||+++++++++++.++++++++||+++||++..+.      +..  .++......+.+.||+++. .  + +..+.++ 
T Consensus        69 avk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~------~~~~~v~~g~~~~~a~~~~pg~v~-~--~-~~~~~~~-  137 (294)
T 3g17_A           69 AVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH------IPFKNVCQAVVYISGQKKGDVVTH-F--R-DYQLRIQ-  137 (294)
T ss_dssp             CSCGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG------CCCSCEEECEEEEEEEEETTEEEE-E--E-EEEEEEE-
T ss_pred             eCCccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh------CCCCcEEEEEEEEEEEEcCCCEEE-E--C-CCEEecC-
Confidence            999999999999999999889999999999987632      111  1111001134577888762 1  2 3334342 


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHcCC
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGA  359 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg----~N~~~al~~~~~~E~~~lA~a~Gi  359 (420)
                       +.+..++++++|+..+++++.++|+.+.+|.|+++|+....+++ .+...|    ++....++.++++|+.++++++|+
T Consensus       138 -~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al-~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~  215 (294)
T 3g17_A          138 -DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITA-LGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGL  215 (294)
T ss_dssp             -CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHH-HHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHH-HCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence             45678999999999999999999999999999999983323333 344444    677889999999999999999999


Q ss_pred             Ch
Q 014700          360 KP  361 (420)
Q Consensus       360 ~~  361 (420)
                      +.
T Consensus       216 ~l  217 (294)
T 3g17_A          216 NF  217 (294)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.89  E-value=3.5e-22  Score=196.61  Aligned_cols=230  Identities=17%  Similarity=0.134  Sum_probs=166.2

Q ss_pred             hhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       122 ~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      .....||||+|||+|.||.+||..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTLSKCDELVEHG--------------ASVCESPAEVIKKCK   79 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCS
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeEcCCHHHHHHhCC
Confidence            34456799999999999999999999998  99999999999888888654              356678999999999


Q ss_pred             EEEEccCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCe
Q 014700          202 YCLHAMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT  277 (420)
Q Consensus       202 iVIlaVp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t  277 (420)
                      +||+|||. ..+++++   +++.+.++++++||++++ +.+.+.+.+.+.+.+. |.     .++..|...........+
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~-g~-----~~v~~pv~g~~~~a~~g~  152 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMST-VDAETSLKINEAITGK-GG-----RFVEGPVSGSKKPAEDGQ  152 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSC-CCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTC
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----EEEeCCCCCChhHHhcCC
Confidence            99999996 5788888   788888999999999874 5665555555555543 32     234444433221111123


Q ss_pred             EEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc
Q 014700          278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM  357 (420)
Q Consensus       278 ~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~  357 (420)
                      ..++.+++++.+++++++|+..|.++++.++....++.                 |+.+|........+++|+..++++.
T Consensus       153 l~i~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~-----------------Kl~~N~~~~~~~~~~~Ea~~l~~~~  215 (310)
T 3doj_A          153 LIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKM-----------------KLIVNMIMGSMMNAFSEGLVLADKS  215 (310)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33445567889999999999999888888775444443                 3456666777788999999999999


Q ss_pred             CCChhhhhhccccch----h-hhhhcccCCCCccccccc
Q 014700          358 GAKPATITGLSGTGD----I-MLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       358 Gi~~~t~~~l~g~gd----l-~~t~~~~~sRn~~~G~~l  391 (420)
                      |++++++.+..+.+.    + -........++|..||.+
T Consensus       216 G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~  254 (310)
T 3doj_A          216 GLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPL  254 (310)
T ss_dssp             TSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBH
T ss_pred             CCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccH
Confidence            999999988543221    1 011122446777777653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.88  E-value=1.8e-22  Score=197.84  Aligned_cols=226  Identities=15%  Similarity=0.125  Sum_probs=158.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.||.+||.+|+++|  |+|++|||++++++.+.+.|              ....++++|+++.+|+||+|
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~~dvvi~~   68 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAG--YELVVWNRTASKAEPLTKLG--------------ATVVENAIDAITPGGIVFSV   68 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEC-------CTTTTTT--------------CEECSSGGGGCCTTCEEEEC
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcC--------------CeEeCCHHHHHhcCCceeee
Confidence            358999999999999999999999  99999999998877665543              46667899999999999999


Q ss_pred             cChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          207 MPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       207 Vp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      +|+. .+++++ ..+.+.+++++++|.+++ +.+++.+.+.+.+.+. |     +.++.+|...........+..++.++
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~iiid~sT-~~p~~~~~~~~~~~~~-g-----~~~ldapVsGg~~~a~~g~l~im~gG  141 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDGVHVSMST-ISPETSRQLAQVHEWY-G-----AHYVGAPIFARPEAVRAKVGNICLSG  141 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCCEEEEEE
T ss_pred             ccchhhHHHHHHHHHHhhcCCCeEEEECCC-CChHHHHHHHHHHHhc-C-----CceecCCcCCCccccccccceeeccc
Confidence            9965 455554 557777889999999886 6777666666666553 3     34566665543322222233345567


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~  364 (420)
                      +++.+++++++|+..+.++++..+..|                ..+.+|+.+|........++.|+..++++.|++++++
T Consensus       142 ~~~~~~~~~~~l~~~g~~i~~~g~~~G----------------~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~  205 (297)
T 4gbj_A          142 NAGAKERIKPIVENFVKGVFDFGDDPG----------------AANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSI  205 (297)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEECCSCTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             chhHHHHHHHHHHHhhCCeEEecCCcc----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            889999999999999988887764322                2334456678888888999999999999999999999


Q ss_pred             hhcc--ccch---hhhhhcccCCCCcc-ccccc
Q 014700          365 TGLS--GTGD---IMLTCFVNLSRNRT-VGVRL  391 (420)
Q Consensus       365 ~~l~--g~gd---l~~t~~~~~sRn~~-~G~~l  391 (420)
                      ++..  +.+.   +.........++|. .||.+
T Consensus       206 ~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~  238 (297)
T 4gbj_A          206 YEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRF  238 (297)
T ss_dssp             HHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBH
T ss_pred             HHHHHhhcccCchhhccCccccCCCCCCccchh
Confidence            9843  2221   11222334567776 36654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.88  E-value=1e-21  Score=194.22  Aligned_cols=226  Identities=19%  Similarity=0.210  Sum_probs=167.2

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+|||+|||+|.||.++|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTPARAASLAALG--------------ATIHEQARAAARDADIVV   92 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTT--------------CEEESSHHHHHTTCSEEE
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHCC--------------CEeeCCHHHHHhcCCEEE
Confidence            45789999999999999999999998  99999999999988887753              456778999999999999


Q ss_pred             EccCh-hhHHHHHH--HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          205 HAMPV-QFSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       205 laVp~-~~l~~vl~--~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      +|||. ..+++++.  ++.+.++++++||++++ ..+.+.+.+.+.+.+. |     ..++.+|.+.........+..++
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~  165 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGAL-G-----IAHLDTPVSGGTVGAEQGTLVIM  165 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECHHHHHHHTCEEEE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHhHHhcCCeeEE
Confidence            99995 67888887  78888889999999876 4554444555555442 2     34556666654432222233445


Q ss_pred             ecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                      .+++++.+++++++|+.. .++++.++....++                 +|+.+|........+++|+..++++.|+++
T Consensus       166 ~gg~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~-----------------~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~  227 (320)
T 4dll_A          166 AGGKPADFERSLPLLKVF-GRATHVGPHGSGQL-----------------TKLANQMIVGITIGAVAEALLFATKGGADM  227 (320)
T ss_dssp             EESCHHHHHHHHHHHHHH-EEEEEEESTTHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred             eCCCHHHHHHHHHHHHhc-CCEEEeCCccHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            566888999999999988 77777776533333                 335567777788889999999999999999


Q ss_pred             hhhhhccccc--h---hhhhhcccCCCCccccccc
Q 014700          362 ATITGLSGTG--D---IMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       362 ~t~~~l~g~g--d---l~~t~~~~~sRn~~~G~~l  391 (420)
                      +++++..+.+  +   +.......++++|..||.+
T Consensus       228 ~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~  262 (320)
T 4dll_A          228 AKVKEAITGGFADSRVLQLHGQRMVERDFAPRARL  262 (320)
T ss_dssp             HHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBH
T ss_pred             HHHHHHHHcccccCHHHHHhhhhhccCCCCCcccH
Confidence            9998854322  1   1112224557888888754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.88  E-value=4e-22  Score=193.68  Aligned_cols=203  Identities=15%  Similarity=0.151  Sum_probs=156.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|.||.++|..|+++|  |+|++|+|++++++.+.+.|              +..+++++++++++|+||+|
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNPAKCAPLVALG--------------ARQASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSGGGGHHHHHHT--------------CEECSCHHHHHHHCSEEEEC
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHHcCCEEEEE
Confidence            579999999999999999999998  99999999999888888764              35667899988999999999


Q ss_pred             cChh-hHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPVQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~~-~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||.. .+++++   +++.+.++++++||++++ ..+.+.+.+.+.+.+. |     ..++.+|.+.........+..++.
T Consensus        65 v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  137 (287)
T 3pdu_A           65 LADPAAAREVCFGANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTAR-G-----GRFLEAPVSGTKKPAEDGTLIILA  137 (287)
T ss_dssp             CSSHHHHHHHHHSTTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCEEEEE
T ss_pred             cCCHHHHHHHHcCchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CEEEECCccCCHHHHhcCCEEEEE
Confidence            9975 799998   888888889999999886 4555444555555442 2     234555544332222222334455


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +.+++.+++++++|+..+.++++..+....++.                 |+.+|.....+..++.|+..++++.|++++
T Consensus       138 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~-----------------Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~  200 (287)
T 3pdu_A          138 AGDQSLFTDAGPAFAALGKKCLHLGEVGQGARM-----------------KLVVNMIMGQMMTALGEGMALGRNCGLDGG  200 (287)
T ss_dssp             EECHHHHHHTHHHHHHHEEEEEECSSTTHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEcCCCChHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            668889999999999999888888775433333                 455677777888899999999999999999


Q ss_pred             hhhhccc
Q 014700          363 TITGLSG  369 (420)
Q Consensus       363 t~~~l~g  369 (420)
                      ++.++.+
T Consensus       201 ~~~~~~~  207 (287)
T 3pdu_A          201 QLLEVLD  207 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.88  E-value=9.6e-23  Score=207.26  Aligned_cols=255  Identities=14%  Similarity=0.183  Sum_probs=165.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEe---CCHHHHHHH-HHhcC--CCCCCCC--CCCCCceE-EeCCHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM---RDPAVCQSI-NEKHC--NCRYFPE--QKLPENVI-ATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~---r~~~~~~~i-~~~g~--~~~~l~~--~~l~~~i~-a~td~~ea  196 (420)
                      +|||+|||+|+||+++|..|++ +|  ++|++|+   |+++.++.+ ++.+.  +..+.++  ..++..+. ++++++++
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G--~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   79 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDG--VEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA   79 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTT--EEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC--CEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH
Confidence            5799999999999999999988 58  9999999   887777774 43331  1112222  12222333 67788888


Q ss_pred             ccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec--cCCCcchhhhHHHHHHHH-----h-CCCCCCe-EEEECccc
Q 014700          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS--KGLELNTLRMMSQIIPQA-----L-RNPRQPF-IALSGPSF  267 (420)
Q Consensus       197 l~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s--nGi~~~t~~~~se~l~~~-----l-g~~~~~~-~vl~GP~~  267 (420)
                      ++++|+||+|||++.++++++++.++++++++|++++  +|+....    .+.+.+.     + +....+. +.+.||++
T Consensus        80 ~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~----~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~  155 (404)
T 3c7a_A           80 ISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQC----RDILGDKAAAVSMMSFETLPWACRIKEFGR  155 (404)
T ss_dssp             HTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHHHH----HHHHGGGGGTSEEEEESSCSEEEEEEETTT
T ss_pred             hCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHHHH----HHHHHhcCCCeEEEEecCchHhhcccCCCc
Confidence            8999999999999999999999999999999999854  4433221    1233322     1 1001223 55678885


Q ss_pred             HHHHhhcCCeEEEEecC--CHHHHHHHHHHHhcCCc-e-EEEcCChhHHHHHHHHHHHHHHHHHHHHhc------c----
Q 014700          268 ALELMNKLPTAMVVASK--DRKLANAVQQLLASKHL-R-ISTSSDVTGVEIAGALKNVLAIAAGIVVGM------N----  333 (420)
Q Consensus       268 a~ev~~g~~t~i~ia~~--d~e~~~~l~~ll~~~g~-~-v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl------~----  333 (420)
                      +.++..+.. .+.++..  +.+..+++.++|+..+. . +.+++|+.+.+|+.   |++.+..++..+.      .    
T Consensus       156 ~v~~~~~~~-~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~---N~~~~~~~~l~~~~~~~g~~~~~~  231 (404)
T 3c7a_A          156 KVEVLGTKS-VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS---YSFVHPAILFGRWGSWDGKPVPEA  231 (404)
T ss_dssp             EEEEEEECS-EEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTT---CTTHHHHHHHHHHTTCCSCCBSSC
T ss_pred             EEEEEEECc-eEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCCEeeeeecC---CceeccHHHHHHHHhhhcCCCCCC
Confidence            443332221 1222211  11122345555555554 3 66899999998874   6655555554222      1    


Q ss_pred             --cch---hHHHHHHHHHHHHHHHHHHHc-----CCChhhhhhccccchhhhhhcccCCCCccccccccCCCChHHHHHH
Q 014700          334 --LGN---NSMAALVAQGCSEIRWLATKM-----GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSS  403 (420)
Q Consensus       334 --lg~---N~~~al~~~~~~E~~~lA~a~-----Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~  403 (420)
                        +..   +....++.++++|+.++++++     |++++++   .+++|++.+|         +|..++.+.++.++.++
T Consensus       232 ~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~---~~~~d~~~~~---------~~~~~~~~~s~~~~~~~  299 (404)
T 3c7a_A          232 PLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDLSDV---KDIYQWYLEY---------YHEDIQDDHDLYHAITT  299 (404)
T ss_dssp             CBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTC---CCHHHHHHHH---------STTTBSCCSSHHHHHHT
T ss_pred             CccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccC---CCHHHHHHHh---------CCCccCChhhHHHHHHh
Confidence              333   367799999999999999999     9988655   6788888877         33345556666665544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.88  E-value=9.4e-22  Score=192.27  Aligned_cols=200  Identities=12%  Similarity=0.072  Sum_probs=152.3

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |...|||+|||+|.||.++|..|+++|  |+|++|+|++++++.+.+.|              +..+++++++++ +|+|
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~-aDvv   74 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIEAMTPLAEAG--------------ATLADSVADVAA-ADLI   74 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTTTSHHHHHTT--------------CEECSSHHHHTT-SSEE
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CEEcCCHHHHHh-CCEE
Confidence            333579999999999999999999998  99999999999888888753              456778999888 9999


Q ss_pred             EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |+|||. ..++++++++.+.++++++||++++ ..+.+.+.+.+.+.+. |     ..++.+|.+.........+..++.
T Consensus        75 i~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  147 (296)
T 3qha_A           75 HITVLDDAQVREVVGELAGHAKPGTVIAIHST-ISDTTAVELARDLKAR-D-----IHIVDAPVSGGAAAAARGELATMV  147 (296)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGG-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred             EEECCChHHHHHHHHHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHHHHhcCCccEEe
Confidence            999995 5789999999999999999999875 4555444455555432 2     234555544332221122334455


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +.+++.+++++++|+..+.++++..+.-..+                 .+|+.+|........+++|+..+++++|++++
T Consensus       148 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~-----------------~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~  210 (296)
T 3qha_A          148 GADREVYERIKPAFKHWAAVVIHAGEPGAGT-----------------RMKLARNMLTFTSYAAACEAMKLAEAAGLDLQ  210 (296)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEESTTHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCeEEcCChhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            6688899999999999998888777653333                 34456777788888999999999999999999


Q ss_pred             hh
Q 014700          363 TI  364 (420)
Q Consensus       363 t~  364 (420)
                      ++
T Consensus       211 ~~  212 (296)
T 3qha_A          211 AL  212 (296)
T ss_dssp             HH
T ss_pred             HH
Confidence            99

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.87  E-value=2.5e-21  Score=188.34  Aligned_cols=224  Identities=21%  Similarity=0.219  Sum_probs=165.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|.||..+|..|+++|  ++|.+|+|++++.+.+.+.|              +...++++++++++|+||+|
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~vi~~   68 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAG--------------AETASTAKAIAEQCDVIITM   68 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEECSSHHHHHHHCSEEEEC
T ss_pred             cceEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEEEEE
Confidence            479999999999999999999998  89999999999888887753              34556888888899999999


Q ss_pred             cC-hhhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp-~~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      +| +..++.++   +++.+.++++++||++++|... +.+.+.+.+.+.      ...++..|..............++.
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~-~~~~l~~~~~~~------g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPL-ASREISDALKAK------GVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHTT------TCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHH-HHHHHHHHHHHc------CCeEEEecCCCCHhHHhcCCEEEEe
Confidence            99 56788888   6788888899999999987542 223344444331      2334455554332221112223344


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      +.+++..++++++|+..|+.+++.++.....|.|+                 .+|....++..++.|+..++++.|++++
T Consensus       142 ~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl-----------------~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  204 (299)
T 1vpd_A          142 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKL-----------------ANQVIVALNIAAMSEALTLATKAGVNPD  204 (299)
T ss_dssp             ESCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            55888899999999999999888877655555443                 4556677888999999999999999999


Q ss_pred             hhhhccccch-----hhhhhcccCCCCcccccc
Q 014700          363 TITGLSGTGD-----IMLTCFVNLSRNRTVGVR  390 (420)
Q Consensus       363 t~~~l~g~gd-----l~~t~~~~~sRn~~~G~~  390 (420)
                      ++.++.+.++     +...+.+.++++++.|+.
T Consensus       205 ~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~  237 (299)
T 1vpd_A          205 LVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFR  237 (299)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSB
T ss_pred             HHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCC
Confidence            9988664443     223456677788777664

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.87  E-value=1.9e-21  Score=190.47  Aligned_cols=226  Identities=14%  Similarity=0.115  Sum_probs=163.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|.||.+||..|+++|  ++|++|+|++++++.+.+.|..             ..+++++++++++|+||+|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNPQACANLLAEGAC-------------GAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCS-------------EEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCc-------------cccCCHHHHHhcCCEEEEE
Confidence            579999999999999999999998  9999999999999998876521             2256788888999999999


Q ss_pred             cCh-hhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~-~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||. ..++.++   +++.+.++++++||++++ ..+.+.+.+.+.+.+. |     ..++..|...........+..++.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  144 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTAL-N-----LNMLDAPVSGGAVKAAQGEMTVMA  144 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCCCChhhhhcCCeEEEe
Confidence            997 4688888   788888999999999875 5554444444444432 2     234445544332222233444555


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEcCC-hhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          283 SKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s~D-i~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                      +.+++.+++++++|+..+.+++..++ +-..++.|                 +.+|...++...+++|+..++++.|+++
T Consensus       145 gg~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~K-----------------l~~N~~~~~~~~~~~Ea~~l~~~~G~d~  207 (303)
T 3g0o_A          145 SGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVK-----------------IIHQLLAGVHIAAAAEAMALAARAGIPL  207 (303)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            66889999999999999988877766 54444444                 4556666777889999999999999999


Q ss_pred             hhhhhccccch----h-hhhhcccCCCCccccccc
Q 014700          362 ATITGLSGTGD----I-MLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       362 ~t~~~l~g~gd----l-~~t~~~~~sRn~~~G~~l  391 (420)
                      +++.++.+.+.    + .......+.++|..|+.+
T Consensus       208 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  242 (303)
T 3g0o_A          208 DVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAV  242 (303)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBH
T ss_pred             HHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCch
Confidence            99988653321    1 111122345677666643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.87  E-value=1.1e-21  Score=203.74  Aligned_cols=241  Identities=15%  Similarity=0.104  Sum_probs=181.4

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhc-CCCC-eEEEEeCCHH----HHHHHHHhcCCCC--CCCCCC-------CCCceE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDPA----VCQSINEKHCNCR--YFPEQK-------LPENVI  188 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~a-G~~~-~V~l~~r~~~----~~~~i~~~g~~~~--~l~~~~-------l~~~i~  188 (420)
                      +..+|||+|||+|.||+++|..|+++ |  | +|++||++++    +++.+++.. ...  |.++..       ...++.
T Consensus        15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~~~~~kv~~l~~g~-~~i~~~e~gl~~l~~~~~~~g~l~   91 (478)
T 3g79_A           15 RGPIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSKSSGYKIEMLNRGE-SPLKGEEPGLEELIGKVVKAGKFE   91 (478)
T ss_dssp             HCSCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCTTTTTHHHHHTTTC-CCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChhHhHHHHHHHHhcC-CCccccCCCHHHHHHhhcccCCeE
Confidence            45678999999999999999999999 9  9 9999999999    999998743 333  444432       145688


Q ss_pred             EeCCHHHhccCCcEEEEccChh------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHH-HHhCCC
Q 014700          189 ATTDAKTALLGADYCLHAMPVQ------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP-QALRNP  255 (420)
Q Consensus       189 a~td~~eal~~aDiVIlaVp~~------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~-~~lg~~  255 (420)
                      ++++ .+++++||+||+|||+.            ++..+++++.++++++++||..+ ++.+.+.+.+.+.+. +..|..
T Consensus        92 ~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~pgtt~~v~~~ile~~~g~~  169 (478)
T 3g79_A           92 CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES-TITPGTTEGMAKQILEEESGLK  169 (478)
T ss_dssp             EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS-CCCTTTTTTHHHHHHHHHHCCC
T ss_pred             EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC-CCChHHHHHHHHHHHHHhcCCC
Confidence            8888 57789999999999965            27788889999999999988776 799888777776443 444531


Q ss_pred             -CCCeEEEECcccHHHHh----hcCCeEEEEecCCHHHHHHHHHHHhcC-CceEEEcCChhHHHHHHHHHHHHHHHHHHH
Q 014700          256 -RQPFIALSGPSFALELM----NKLPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIV  329 (420)
Q Consensus       256 -~~~~~vl~GP~~a~ev~----~g~~t~i~ia~~d~e~~~~l~~ll~~~-g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~  329 (420)
                       ...+.++++|.+..+..    ...+..+ +++.+++.+++++++|+.. +..++...|+...|+.|+            
T Consensus       170 ~~~d~~v~~~Pe~~~~G~a~~~~~~~~~I-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl------------  236 (478)
T 3g79_A          170 AGEDFALAHAPERVMVGRLLKNIREHDRI-VGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKT------------  236 (478)
T ss_dssp             BTTTBEEEECCCCCCTTSHHHHHHHSCEE-EEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHH------------
T ss_pred             cCCceeEEeCCccCCccchhhhhcCCcEE-EEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHH------------
Confidence             13578999998875421    1123344 5677888889999999998 677777788777666654            


Q ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCccccccc
Q 014700          330 VGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       330 ~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l  391 (420)
                           .+|...++....++|+..+|+++|+|++.+++..+.....    ....+.+.+|+.+
T Consensus       237 -----~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~~~----ri~~~~~~PG~G~  289 (478)
T 3g79_A          237 -----AENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLKGE----GITRAVLWPGAGV  289 (478)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSCCS----SSCCCCCCCCSCC
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCchh----hhccccCCCCCCc
Confidence                 4566778888899999999999999999998876543210    1234556666643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.87  E-value=3e-21  Score=187.47  Aligned_cols=224  Identities=17%  Similarity=0.147  Sum_probs=163.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.++|..|+++|  ++|++|+|++++++.+.+.+              +..+++++++++++|+||+||
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPEKAEELAALG--------------AERAATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEEc
Confidence            79999999999999999999998  99999999999888888753              356678999899999999999


Q ss_pred             C-hhhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          208 P-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       208 p-~~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      | +..+++++   +++.+.++++++||+++ ++.+.+.+.+.+.+.+. |.     .++..|...........+..++.+
T Consensus        66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~s-t~~~~~~~~~~~~~~~~-g~-----~~~~~pv~g~~~~a~~g~l~~~~g  138 (287)
T 3pef_A           66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMS-TVDPATSQRIGVAVVAK-GG-----RFLEAPVSGSKKPAEDGTLIILAA  138 (287)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEeCC-CCCHHHHHHHHHHHHHh-CC-----EEEECCCcCCHHHHhcCCEEEEEe
Confidence            9 56899999   88888899999999886 46665555555555543 32     233334332221111123344555


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+++.+++++++|+..+.++++.++....++.|                 +.+|........+++|+..++++.|+++++
T Consensus       139 g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~K-----------------l~~N~~~~~~~~~~~E~~~l~~~~G~d~~~  201 (287)
T 3pef_A          139 GDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMK-----------------LVVNMVMGGMMACFCEGLALGEKAGLATDA  201 (287)
T ss_dssp             ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            678899999999999998888887754444444                 455666677788999999999999999999


Q ss_pred             hhhccccch----h-hhhhcccCCCCccccccc
Q 014700          364 ITGLSGTGD----I-MLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       364 ~~~l~g~gd----l-~~t~~~~~sRn~~~G~~l  391 (420)
                      +.+..+.+.    + .........++|..|+.+
T Consensus       202 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (287)
T 3pef_A          202 ILDVIGAGAMANPMFALKGGLIRDRNFAPAFPL  234 (287)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBH
T ss_pred             HHHHHHhcccccHHHHHHhhhhhcCCCCCCCch
Confidence            988653321    1 111122345667666643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.87  E-value=1.1e-20  Score=194.42  Aligned_cols=241  Identities=16%  Similarity=0.138  Sum_probs=179.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC--C-----CCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~--l-----~~~i~a~td~~eal~~a  200 (420)
                      |||+|||+|+||.++|..|+++|  ++|++|+|++++++.+++.+ ...+.++..  +     ..++.+++++++++++|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccC
Confidence            69999999999999999999998  89999999999999998754 333333321  0     22478889998888999


Q ss_pred             cEEEEccChhh----------HHHHHHHhhhcCCC---CCeEEEeccCCCcch-hhhHHHHHHHHhCCCC-CCeEEEECc
Q 014700          201 DYCLHAMPVQF----------SSSFLEGISDYVDP---GLPFISLSKGLELNT-LRMMSQIIPQALRNPR-QPFIALSGP  265 (420)
Q Consensus       201 DiVIlaVp~~~----------l~~vl~~i~~~l~~---~~iVVs~snGi~~~t-~~~~se~l~~~lg~~~-~~~~vl~GP  265 (420)
                      |+||+|||...          ++++++++.+++++   +++||..+ ++.+.+ .+.+.+.+.+..+... ..+.+.++|
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~P  156 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEECc
Confidence            99999999765          89999999998888   88888775 455555 5666677766544321 245677888


Q ss_pred             ccHHHHh----hcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 014700          266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (420)
Q Consensus       266 ~~a~ev~----~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~a  341 (420)
                      .+..+..    ...+..+++++.+++..+.++++|+..+..++. .|+...+|.|++.                 |...+
T Consensus       157 e~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~-----------------N~~~a  218 (436)
T 1mv8_A          157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTC-----------------NVWHA  218 (436)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHH-----------------HHHHH
T ss_pred             ccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHH-----------------HHHHH
Confidence            8765421    123444666766688889999999999887766 7887777776544                 44566


Q ss_pred             HHHHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCccccccccCC
Q 014700          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG  394 (420)
Q Consensus       342 l~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~~G~~l~~g  394 (420)
                      +....++|+..+|+++|++++++.+..+....+.    ..+|++.+|..++..
T Consensus       219 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~r~~----~~~~~~~pg~g~gg~  267 (436)
T 1mv8_A          219 AKVTFANEIGNIAKAVGVDGREVMDVICQDHKLN----LSRYYMRPGFAFGGS  267 (436)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTT----TSSTTCSCCSCCCSS
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC----CcccCCCCcccccCc
Confidence            7788999999999999999999988777533211    015777887655543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.86  E-value=1.1e-21  Score=193.83  Aligned_cols=221  Identities=14%  Similarity=0.098  Sum_probs=161.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-------~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~  198 (420)
                      +|||+|||+|.||.++|..|+++|. ++|++|+|++       +..+.+.+.|              +  .+ +++++++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~~~~~~g--------------~--~~~s~~e~~~   86 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNA-ARLAAYDLRFNDPAASGALRARAAELG--------------V--EPLDDVAGIA   86 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECGGGGCTTTHHHHHHHHHHTT--------------C--EEESSGGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCC-CeEEEEeCCCccccchHHHHHHHHHCC--------------C--CCCCHHHHHh
Confidence            5899999999999999999999862 7999999997       4455555432              2  34 6778889


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeE
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~  278 (420)
                      +||+||+|||.....+.++++.+.++++++||+++ ++.+.+.+.+.+.+.+. |..... +.++||..+.   .+..+ 
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~-g~~~~d-~pv~g~~~a~---~g~l~-  159 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATG-KGSFVE-GAVMARVPPY---AEKVP-  159 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTS-SCEEEE-EEECSCSTTT---GGGSE-
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHc-CCeEEe-ccCCCCchhh---cCCEE-
Confidence            99999999999888888899999999999999987 57776656666666543 321111 2456665432   23333 


Q ss_pred             EEEecCCHHHHHHHHHHHhcCCceEEEcCC-hhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc
Q 014700          279 MVVASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM  357 (420)
Q Consensus       279 i~ia~~d~e~~~~l~~ll~~~g~~v~~s~D-i~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~  357 (420)
                      +++++.+.   ++++++|+..+.+++..++ +-..                 +.+|+.+|...+....+++|+..+++++
T Consensus       160 i~vgg~~~---~~~~~ll~~~g~~v~~~g~~~g~a-----------------~~~Kl~~N~~~~~~~~~~~E~~~la~~~  219 (317)
T 4ezb_A          160 ILVAGRRA---VEVAERLNALGMNLEAVGETPGQA-----------------SSLKMIRSVMIKGVEALLIEALSSAERA  219 (317)
T ss_dssp             EEEESTTH---HHHHHHHHTTTCEEEEEESSTTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCChH---HHHHHHHHHhCCCeEEeCCCcCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44555443   8899999999998887776 5333                 3445667777788889999999999999


Q ss_pred             CCChhhhhhcccc---chhhhhhcccCCCCccccccc
Q 014700          358 GAKPATITGLSGT---GDIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       358 Gi~~~t~~~l~g~---gdl~~t~~~~~sRn~~~G~~l  391 (420)
                      |++++.+..+.+.   .+....+....+|++..|+.+
T Consensus       220 Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~  256 (317)
T 4ezb_A          220 GVTERILDSVQETFPGLDWRDVADYYLSRTFEHGARR  256 (317)
T ss_dssp             TCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCCcch
Confidence            9999765554422   133334555678888888875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.86  E-value=1.6e-22  Score=195.15  Aligned_cols=235  Identities=14%  Similarity=0.149  Sum_probs=158.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|+||+++|..|+++|  ++|++|+|++++.+.+...+.+     +..++..+. .++. ++++++|+||+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~l~~~~~~-----~~~~~~~~~-~~~~-~~~~~~d~vi~~v   71 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETD-----GSIFNESLT-ANDP-DFLATSDLLLVTL   71 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTT-----SCEEEEEEE-ESCH-HHHHTCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCccceeeEEEEcCC-----Cceeeeeee-ecCc-cccCCCCEEEEEe
Confidence            69999999999999999999998  8999999987654333222110     100111122 2444 5578999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHH
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e  287 (420)
                      |++.++++++++.++++++++||+++||+...  +.+.+.+.+.+.......+.+.|| .+.+...+. ..+...+.+.+
T Consensus        72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~--~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~-~~i~~~~~~~~  147 (291)
T 1ks9_A           72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI--EELQNIQQPLLMGTTTHAARRDGN-VIIHVANGI-THIGPARQQDG  147 (291)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT--GGGTTCCSCEEEEEECCEEEEETT-EEEEEECCC-EEEEESSGGGT
T ss_pred             cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcH--HHHHHhcCCeEEEEEeEccEEcCC-EEEEecccc-eEEccCCCCcc
Confidence            99999999999999999999999999998642  122222221111100113457888 544433343 22222233456


Q ss_pred             HHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHcCCCh--hhh
Q 014700          288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN-NSMAALVAQGCSEIRWLATKMGAKP--ATI  364 (420)
Q Consensus       288 ~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~-N~~~al~~~~~~E~~~lA~a~Gi~~--~t~  364 (420)
                      ..++++++|+..|+.+++.+|+.+..|.|++.|..........+...+. .....++.+++.|+..+++++|+++  +.+
T Consensus       148 ~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~  227 (291)
T 1ks9_A          148 DYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDL  227 (291)
T ss_dssp             TCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             hHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            6789999999999999999999999999998887655544444433321 0024788999999999999999986  333


Q ss_pred             hhccccchhhhhh
Q 014700          365 TGLSGTGDIMLTC  377 (420)
Q Consensus       365 ~~l~g~gdl~~t~  377 (420)
                      .  .++.++..++
T Consensus       228 ~--~~~~~~~~~~  238 (291)
T 1ks9_A          228 R--DYVMQVIDAT  238 (291)
T ss_dssp             H--HHHHHHHHHT
T ss_pred             H--HHHHHHHhcC
Confidence            2  3345555444

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.86  E-value=2.1e-20  Score=181.96  Aligned_cols=227  Identities=15%  Similarity=0.189  Sum_probs=163.6

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+|||+|||+|.||.++|..|+++|  ++|++|+|++++.+.+.+.+              +...++++++++++|+||
T Consensus         2 ~~~~~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~vi   65 (301)
T 3cky_A            2 EKSIKIGFIGLGAMGKPMAINLLKEG--VTVYAFDLMEANVAAVVAQG--------------AQACENNQKVAAASDIIF   65 (301)
T ss_dssp             --CCEEEEECCCTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHTTT--------------CEECSSHHHHHHHCSEEE
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEEE
Confidence            44689999999999999999999998  89999999999888877643              345568888888999999


Q ss_pred             EccC-hhhHHHHHH---HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700          205 HAMP-VQFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       205 laVp-~~~l~~vl~---~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      +|+| +..++.++.   ++.+.++++++||++++|.. .+.+.+.+.+.+. +     +.++..|....+.........+
T Consensus        66 ~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~l~~~~~~~-g-----~~~~~~p~~~~~~~a~~g~~~~  138 (301)
T 3cky_A           66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSP-SSTLKMAKVAAEK-G-----IDYVDAPVSGGTKGAEAGTLTI  138 (301)
T ss_dssp             ECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCH-HHHHHHHHHHHHT-T-----CEEEECCEESHHHHHHHTCEEE
T ss_pred             EECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCH-HHHHHHHHHHHHc-C-----CeEEEccCCCCHHHHHcCCeEE
Confidence            9997 566888885   78888889999999998763 2223444444432 2     2234455544332211122223


Q ss_pred             EecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      +.+.+++..+.++++|+..|+.+++..+.....|.|+                 .+|....++..++.|+..+++++|++
T Consensus       139 ~~~g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl-----------------~~N~~~~~~~~~~~Ea~~l~~~~G~~  201 (301)
T 3cky_A          139 MVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKI-----------------VNNLLLGCNMASLAEALVLGVKCGLK  201 (301)
T ss_dssp             EEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3445888899999999999998877766544445443                 45556777888999999999999999


Q ss_pred             hhhhhhcccc---ch--hhhhhc-ccCCCCccccccc
Q 014700          361 PATITGLSGT---GD--IMLTCF-VNLSRNRTVGVRL  391 (420)
Q Consensus       361 ~~t~~~l~g~---gd--l~~t~~-~~~sRn~~~G~~l  391 (420)
                      ++++.++...   ++  +..++. +.++||++.|+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  238 (301)
T 3cky_A          202 PETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAM  238 (301)
T ss_dssp             HHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBH
T ss_pred             HHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccH
Confidence            9988875432   22  334566 6788998877643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.85  E-value=3.5e-21  Score=200.13  Aligned_cols=249  Identities=12%  Similarity=0.080  Sum_probs=176.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc---CCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~---~aDi  202 (420)
                      .+|||+|||+|.||.+||..|+++|  ++|++|+|++++++.+.+.+...         .++..+++++++++   ++|+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~g---------~~i~~~~s~~e~v~~l~~aDv   71 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKG---------TKVVGAQSLKEMVSKLKKPRR   71 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTT---------SSCEECSSHHHHHHTBCSSCE
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcccCC---------CceeccCCHHHHHhhccCCCE
Confidence            3689999999999999999999998  99999999999999988764211         13455678888765   5999


Q ss_pred             EEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH-hhcCCeEEE
Q 014700          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL-MNKLPTAMV  280 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev-~~g~~t~i~  280 (420)
                      ||++||. ..++++++++.++++++++||+++++...++ ....+.+.+. |.     .++..|....+. +...+ .++
T Consensus        72 Vil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t-~~~~~~l~~~-Gi-----~fvd~pVsGg~~gA~~G~-~im  143 (484)
T 4gwg_A           72 IILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDT-TRRCRDLKAK-GI-----LFVGSGVSGGEEGARYGP-SLM  143 (484)
T ss_dssp             EEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC-EEE
T ss_pred             EEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHH-HHHHHHHHhh-cc-----ccccCCccCCHHHHhcCC-eee
Confidence            9999998 5899999999999999999999998665443 2333444432 32     233344333222 12223 444


Q ss_pred             EecCCHHHHHHHHHHHhcCCceE-------EEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 014700          281 VASKDRKLANAVQQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL  353 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v-------~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~l  353 (420)
                      ++ ++++.+++++++|+..+.++       .+..+                 .|..+.+|+.+|.......++++|+..+
T Consensus       144 ~G-G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~-----------------~Gag~~vKmv~N~i~~~~m~~iaEa~~l  205 (484)
T 4gwg_A          144 PG-GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGD-----------------EGAGHFVKMVHNGIEYGDMQLICEAYHL  205 (484)
T ss_dssp             EE-ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEE-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCHHHHHHHHHHHHHhcCcccCCCceEEEECC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 46788899999999876554       22222                 2445566788899899999999999999


Q ss_pred             HHH-cCCChhhhhhcc-----ccch---hhhhhcccCCCCccccccccCCCChHHHHHHcCCcccccchhhhh
Q 014700          354 ATK-MGAKPATITGLS-----GTGD---IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVLVNPSMQPLL  417 (420)
Q Consensus       354 A~a-~Gi~~~t~~~l~-----g~gd---l~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~  417 (420)
                      +++ +|++++++.++.     |.++   +..++.....+|+. |     +..+++++++.+|.-||.-|+...
T Consensus       206 ~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~l~~~D~~-g-----~~~ld~i~d~~~~kgtG~wt~~~A  272 (484)
T 4gwg_A          206 MKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTD-G-----KHLLPKIRDSAGQKGTGKWTAISA  272 (484)
T ss_dssp             HHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTT-S-----SBSGGGSCCCCCSSCTTHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhcCCcc-C-----CccHHHHhccccCcchHHHHHHHH
Confidence            999 999999887752     3322   22333333345543 3     345777878888888888776543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.85  E-value=2e-20  Score=181.68  Aligned_cols=224  Identities=15%  Similarity=0.172  Sum_probs=160.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.++|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||+|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHG--YPLIIYDVFPDACKEFQDAG--------------EQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTT--CCEEEECSSTHHHHHHHTTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEeccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence            68999999999999999999998  89999999999888887643              345568888888999999999


Q ss_pred             C-hhhHHHHHHHh---hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          208 P-VQFSSSFLEGI---SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       208 p-~~~l~~vl~~i---~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      | +..+++++.++   .+.++++++||+ ++|+.+++.+.+.+.+.+. +     ..+...|....+...+.....++.+
T Consensus        65 p~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~-g-----~~~~~~p~~~g~~~a~~~~~~~~~~  137 (296)
T 2gf2_A           65 PTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM-G-----AVFMDAPVSGGVGAARSGNLTFMVG  137 (296)
T ss_dssp             SSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT-T-----CEEEECCEESHHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc-C-----CEEEEcCCCCChhHHhcCcEEEEeC
Confidence            6 66788888774   446778999999 7788876555555555442 2     1233444443322222233334445


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+++..++++++|+..|+.++...+. +                ....+|+.+|....++..++.|+..+++++|+++++
T Consensus       138 ~~~~~~~~v~~l~~~~g~~~~~~~~~-g----------------~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~  200 (296)
T 2gf2_A          138 GVEDEFAAAQELLGCMGSNVVYCGAV-G----------------TGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKL  200 (296)
T ss_dssp             SCGGGHHHHHHHHTTTEEEEEEEEST-T----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCc-c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            67788899999999999887765442 1                122344567777788889999999999999999998


Q ss_pred             hhhccccch---hhhhhc---------ccCCCCccccccc
Q 014700          364 ITGLSGTGD---IMLTCF---------VNLSRNRTVGVRL  391 (420)
Q Consensus       364 ~~~l~g~gd---l~~t~~---------~~~sRn~~~G~~l  391 (420)
                      +.++...++   .+.++.         +..+||+..|+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~  240 (296)
T 2gf2_A          201 LAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT  240 (296)
T ss_dssp             HHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred             HHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence            887654332   222221         3346777777654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.85  E-value=5.9e-21  Score=188.11  Aligned_cols=244  Identities=12%  Similarity=0.046  Sum_probs=158.1

Q ss_pred             ccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHHhcC
Q 014700           97 RRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHC  173 (420)
Q Consensus        97 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~--~~~~~~i~~~g~  173 (420)
                      .|..+.+.|.+   |.+.... +    ...+|||+|||+|.||.+||..|+++|  + +|++|+|+  ++..+.+.+.| 
T Consensus         2 ~~~~~~~~~~~---~~~~~~~-~----~~~~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~~~~~~~~~~~~g-   70 (312)
T 3qsg_A            2 HHHHHHSSGVD---LGTENLY-F----QSNAMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAASAESWRPRAEELG-   70 (312)
T ss_dssp             -------------------------------CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSCHHHHHHHHHHTT-
T ss_pred             Ccccccccccc---cCccccc-c----cCCCCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCCCHHHHHHHHHCC-
Confidence            35666777766   4421111 0    124689999999999999999999998  8 99999997  56777776643 


Q ss_pred             CCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh-
Q 014700          174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-  252 (420)
Q Consensus       174 ~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l-  252 (420)
                                   +..+++++++++++|+||+|||.....++++++.+.++++++||++++ +.+.+...+.+.+.+.. 
T Consensus        71 -------------~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st-~~~~~~~~~~~~~~~~~~  136 (312)
T 3qsg_A           71 -------------VSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTS-CSPAVKRAIGDVISRHRP  136 (312)
T ss_dssp             -------------CEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCC-CCHHHHHHHHHHHHHHCT
T ss_pred             -------------CEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCC-CCHHHHHHHHHHHHhhcC
Confidence                         355678889889999999999999888889999999999999998874 66665555556665542 


Q ss_pred             CCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCC-hhHHHHHHHHHHHHHHHHHHHHh
Q 014700          253 RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVG  331 (420)
Q Consensus       253 g~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~D-i~g~e~~~alkNv~Ai~~G~~~g  331 (420)
                      |....+ +.+.||..+.   .+.. .+++++.+.   ++++++|+..|.++++.++ +-..++.                
T Consensus       137 g~~~vd-~pv~g~~~~~---~g~l-~i~vgg~~~---~~~~~ll~~~g~~~~~~g~~~g~a~~~----------------  192 (312)
T 3qsg_A          137 SAQYAA-VAVMSAVKPH---GHRV-PLVVDGDGA---RRFQAAFTLYGCRIEVLDGEVGGAALL----------------  192 (312)
T ss_dssp             TCEEEE-EEECSCSTTT---GGGS-EEEEESTTH---HHHHHHHHTTTCEEEECCSSTTHHHHH----------------
T ss_pred             CCeEEe-ccccCCchhh---cCCE-EEEecCChH---HHHHHHHHHhCCCeEEcCCCCCHHHHH----------------
Confidence            321111 2234443322   2333 344455443   8899999999999888776 5433443                


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhh-cc-ccc--hhhhhhcccCCCCccccccc
Q 014700          332 MNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG-LS-GTG--DIMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       332 l~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~-l~-g~g--dl~~t~~~~~sRn~~~G~~l  391 (420)
                       |+.+|........++.|+..+++++|++++ +++ +. +.+  .+...+...++|++..|+.+
T Consensus       193 -Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~  254 (312)
T 3qsg_A          193 -KMCRSAVLKGLEALFLEALAAAEKMGLADR-VLASLDASFPEHHLRDLALYLVERNLEHADRR  254 (312)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHSGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCCchhHHHhhhHhhcCCCCcccch
Confidence             345566666777889999999999999995 554 22 112  12222334567888888876

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.85  E-value=7.6e-21  Score=197.70  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=165.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC---CcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDiV  203 (420)
                      +|||+|||+|.||.++|..|+++|  ++|.+|+|++++++.+.+...      +    .++..++++++++..   +|+|
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~aDvV   72 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRG--YTVAIYNRTTSKTEEVFKEHQ------D----KNLVFTKTLEEFVGSLEKPRRI   72 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTT------T----SCEEECSSHHHHHHTBCSSCEE
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHhCc------C----CCeEEeCCHHHHHhhccCCCEE
Confidence            479999999999999999999998  899999999999988877521      0    245677788887765   9999


Q ss_pred             EEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH-hhcCCeEEEE
Q 014700          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL-MNKLPTAMVV  281 (420)
Q Consensus       204 IlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev-~~g~~t~i~i  281 (420)
                      |+|||+ ..++++++++.+.++++++||++++|...++     +.+.+.+..  ..+.++..|....+. ....+. ++.
T Consensus        73 ilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-----~~l~~~l~~--~g~~~v~~pv~gg~~~a~~g~~-i~~  144 (474)
T 2iz1_A           73 MLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDT-----MRRNAELAD--SGINFIGTGVSGGEKGALLGPS-MMP  144 (474)
T ss_dssp             EECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-----HHHHHHTTT--SSCEEEEEEECSHHHHHHHCCC-EEE
T ss_pred             EEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHH-----HHHHHHHHH--CCCeEECCCCCCChhhhccCCe-EEe
Confidence            999998 5799999999999999999999999875432     222233332  123344555543322 222233 334


Q ss_pred             ecCCHHHHHHHHHHHhcCCce--------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 014700          282 ASKDRKLANAVQQLLASKHLR--------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL  353 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~--------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~l  353 (420)
                       +.+++..++++++|+..+..        +.+..+.                 |....+|+.+|....++.+++.|+..+
T Consensus       145 -gg~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~-----------------g~g~~~Kl~~N~~~~~~~~~laEa~~l  206 (474)
T 2iz1_A          145 -GGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN-----------------GAGHYVKMVHNGIEYGDMQLIAESYDL  206 (474)
T ss_dssp             -EECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHhcccccCCCceEEEECCc-----------------cHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             44788899999999987765        2333332                 223334566777778889999999999


Q ss_pred             HHH-cCCChhhhhhcc-----c-cchhhhhhccc--CCCCcccc-ccc
Q 014700          354 ATK-MGAKPATITGLS-----G-TGDIMLTCFVN--LSRNRTVG-VRL  391 (420)
Q Consensus       354 A~a-~Gi~~~t~~~l~-----g-~gdl~~t~~~~--~sRn~~~G-~~l  391 (420)
                      +++ +|++++++.++.     | .++.+.+|++.  .+||+..| +.+
T Consensus       207 ~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~g~~~v  254 (474)
T 2iz1_A          207 LKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIV  254 (474)
T ss_dssp             HHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSSSSSBGG
T ss_pred             HHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCCCChhHH
Confidence            999 899999988754     4 56677777665  57898888 444

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.85  E-value=2.6e-20  Score=183.04  Aligned_cols=224  Identities=16%  Similarity=0.166  Sum_probs=159.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+|||+|||+|.||.++|..|+++|  ++|++|+|+++.++.+.+.|              +...++++++++++|+||+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~DvVi~   92 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTAEKCDLFIQEG--------------ARLGRTPAEVVSTCDITFA   92 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSGGGGHHHHHTT--------------CEECSCHHHHHHHCSEEEE
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHcC--------------CEEcCCHHHHHhcCCEEEE
Confidence            3589999999999999999999998  89999999998888877643              2445678888889999999


Q ss_pred             ccC-hhhHHHHHHHhh---hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH--HhhcCCeEE
Q 014700          206 AMP-VQFSSSFLEGIS---DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPTAM  279 (420)
Q Consensus       206 aVp-~~~l~~vl~~i~---~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e--v~~g~~t~i  279 (420)
                      ||| +..+++++.++.   +.+.++++||+++++ .+.+.+.+.+.+.+.      ...++.+|.+...  ...+. ..+
T Consensus        93 av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~------~~~~v~~p~~g~~~~~~~g~-~~~  164 (316)
T 2uyy_A           93 CVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV-DADTVTELAQVIVSR------GGRFLEAPVSGNQQLSNDGM-LVI  164 (316)
T ss_dssp             CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCC-CHHHHHHHHHHHHHT------TCEEEECCEESCHHHHHHTC-EEE
T ss_pred             eCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHc------CCEEEEcCccCChhHHhhCC-EEE
Confidence            999 788999887653   678889999999874 333333344444321      2245555554322  22232 223


Q ss_pred             EEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCC
Q 014700          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (420)
Q Consensus       280 ~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi  359 (420)
                      ++++ +++..++++++|+..|+.+++.+++....|.|.+.|.                 ....+..++.|+..+++++|+
T Consensus       165 ~~~g-~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~-----------------~~~~~~~~~~Ea~~la~~~G~  226 (316)
T 2uyy_A          165 LAAG-DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNM-----------------VQGSFMATIAEGLTLAQVTGQ  226 (316)
T ss_dssp             EEEE-CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCC-CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHcCC
Confidence            3344 7788899999999999998888786555565544433                 222367799999999999999


Q ss_pred             Chhhhhhccccch-----hhhhhcccCCCCccccccc
Q 014700          360 KPATITGLSGTGD-----IMLTCFVNLSRNRTVGVRL  391 (420)
Q Consensus       360 ~~~t~~~l~g~gd-----l~~t~~~~~sRn~~~G~~l  391 (420)
                      +++++.++...++     +...+.+.+.||++.|+.+
T Consensus       227 ~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~  263 (316)
T 2uyy_A          227 SQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYL  263 (316)
T ss_dssp             CHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcH
Confidence            9999887653332     3333555667787776543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.85  E-value=4.1e-21  Score=188.83  Aligned_cols=213  Identities=11%  Similarity=0.014  Sum_probs=157.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|+||+++|..|+ +|  ++|++|+|++++.+.+++.|.+.. .++...+..+...   +++..++|+||+|
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~~~~~~~l~~~G~~~~-~~~~~~~~~~~~~---~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRRQEQAAAIQSEGIRLY-KGGEEFRADCSAD---TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHHCEEEE-ETTEEEEECCEEE---SSCCSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECCHHHHHHHHhCCceEe-cCCCeeccccccc---ccccCCCCEEEEE
Confidence            489999999999999999999 88  999999999988899988775433 1221122222221   2346789999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCeEEEECcccHHHHhhcCCeEEE
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~------~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      ||+++++++++.+.+. .+++ ||+++||++.+      +.+.+.++...      ...+...+|+...+...+   .+.
T Consensus        75 vK~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g---~~~  143 (307)
T 3ego_A           75 VKQHQLQSVFSSLERI-GKTN-ILFLQNGMGHI------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLG---AIK  143 (307)
T ss_dssp             CCGGGHHHHHHHTTSS-CCCE-EEECCSSSHHH------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECC---CEE
T ss_pred             eCHHHHHHHHHHhhcC-CCCe-EEEecCCccHH------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeee---eEE
Confidence            9999999999999875 5666 99999999853      34555555421      112345567665443322   234


Q ss_pred             EecCC--HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHH
Q 014700          281 VASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN----NSMAALVAQGCSEIRWLA  354 (420)
Q Consensus       281 ia~~d--~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~----N~~~al~~~~~~E~~~lA  354 (420)
                      ++..+  .+.++++.++|+..++++..++|+....|.|++.|+..+..+...+..++.    .....++...+.|+.+++
T Consensus       144 iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va  223 (307)
T 3ego_A          144 WSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRIL  223 (307)
T ss_dssp             EEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHH
Confidence            44322  455677888888999999999999999999999999777777777776664    334678999999999999


Q ss_pred             HHc
Q 014700          355 TKM  357 (420)
Q Consensus       355 ~a~  357 (420)
                      ++.
T Consensus       224 ~~~  226 (307)
T 3ego_A          224 KLE  226 (307)
T ss_dssp             TCS
T ss_pred             hcc
Confidence            865

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.85  E-value=3.9e-20  Score=178.77  Aligned_cols=219  Identities=15%  Similarity=0.127  Sum_probs=156.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||||+|||+|.||.++|..|++ |  ++|++|+|++++.+.+.+.|.              ...+ +++++.++|+||+|
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g--~~V~~~~~~~~~~~~~~~~g~--------------~~~~-~~~~~~~~D~vi~~   62 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-R--FPTLVWNRTFEKALRHQEEFG--------------SEAV-PLERVAEARVIFTC   62 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-T--SCEEEECSSTHHHHHHHHHHC--------------CEEC-CGGGGGGCSEEEEC
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHCCC--------------cccC-HHHHHhCCCEEEEe
Confidence            4799999999999999999999 8  899999999998888877542              1223 56677899999999


Q ss_pred             cChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH--HhhcCCeEEEEec
Q 014700          207 MPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPTAMVVAS  283 (420)
Q Consensus       207 Vp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e--v~~g~~t~i~ia~  283 (420)
                      +|... ++++++++.+.++++++||+++++. +.+.+.+.+.+.+.      ...++..|.....  ...+..  .++.+
T Consensus        63 v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~------g~~~~~~p~~~~~~~~~~g~~--~~~~~  133 (289)
T 2cvz_A           63 LPTTREVYEVAEALYPYLREGTYWVDATSGE-PEASRRLAERLREK------GVTYLDAPVSGGTSGAEAGTL--TVMLG  133 (289)
T ss_dssp             CSSHHHHHHHHHHHTTTCCTTEEEEECSCCC-HHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCE--EEEEE
T ss_pred             CCChHHHHHHHHHHHhhCCCCCEEEECCCCC-HHHHHHHHHHHHHc------CCEEEEecCCCChhHHhhCCe--EEEEC
Confidence            99764 8889999988888899999888643 32223333333321      2334455644322  223332  23345


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      .+++..++++++| ..|++++..+|.....|.|.                 ..|....++..++.|+..++++.|+++++
T Consensus       134 ~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~-----------------~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~  195 (289)
T 2cvz_A          134 GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKA-----------------INNALLAVNLWAAGEGLLALVKQGVSAEK  195 (289)
T ss_dssp             SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCcCHHH
Confidence            6788899999999 99998877777654445443                 34556678889999999999999999999


Q ss_pred             hhhccccch---hhh--hhc-ccCCCCcccccc
Q 014700          364 ITGLSGTGD---IML--TCF-VNLSRNRTVGVR  390 (420)
Q Consensus       364 ~~~l~g~gd---l~~--t~~-~~~sRn~~~G~~  390 (420)
                      +.++...++   .+.  ++. +.+.||++.|+.
T Consensus       196 ~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~  228 (289)
T 2cvz_A          196 ALEVINASSGRSNATENLIPQRVLTRAFPKTFA  228 (289)
T ss_dssp             HHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSB
T ss_pred             HHHHHHccCCCCHHHHHhccchhhcCCCCCCcC
Confidence            988664433   122  234 467888877754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.84  E-value=2.5e-20  Score=194.09  Aligned_cols=227  Identities=18%  Similarity=0.218  Sum_probs=170.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC------CCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~------l~~~i~a~td~~eal~~a  200 (420)
                      +|||+|||+|.||.++|..|+++|.+++|++|||++++++.+++.+ ...+.++..      ...++.+++++++++++|
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~-~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDK-LPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5799999999999999999999832389999999999999988643 333333321      023578888988888999


Q ss_pred             cEEEEccChh---------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC-CCCCeEEEEC
Q 014700          201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN-PRQPFIALSG  264 (420)
Q Consensus       201 DiVIlaVp~~---------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~-~~~~~~vl~G  264 (420)
                      |+||+|||+.               ++++++++|.++++++++||..+ ++.+.+.+.+.+.+.+..+. ....+.+.++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~  166 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLKFQVLSN  166 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CCEEEEEC
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCceEEEeC
Confidence            9999999863               38899999999999999998776 57777666677777662231 1134667889


Q ss_pred             cccHHHHh----hcCCeEEEEecCCH----HHHHHHHHHHhcCCc-eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc
Q 014700          265 PSFALELM----NKLPTAMVVASKDR----KLANAVQQLLASKHL-RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG  335 (420)
Q Consensus       265 P~~a~ev~----~g~~t~i~ia~~d~----e~~~~l~~ll~~~g~-~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg  335 (420)
                      |.+..+..    ...+..+++++.+.    +..++++++|+..+. .++...|+...+|.|++.|               
T Consensus       167 Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N---------------  231 (481)
T 2o3j_A          167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVAN---------------  231 (481)
T ss_dssp             CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHH---------------
T ss_pred             cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHH---------------
Confidence            98765421    12343466666542    567899999999874 6677788988888876544               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700          336 NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGD  372 (420)
Q Consensus       336 ~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd  372 (420)
                        ...++....++|+..+|+++|++++++.+..+.+.
T Consensus       232 --~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~~  266 (481)
T 2o3j_A          232 --AFLAQRISSINSISAVCEATGAEISEVAHAVGYDT  266 (481)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST
T ss_pred             --HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccCC
Confidence              45677788999999999999999999998766543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.84  E-value=3.2e-20  Score=178.92  Aligned_cols=219  Identities=16%  Similarity=0.193  Sum_probs=160.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.++|..|.++|  ++|++|+|+++.++.+.+.|..            ...+++++++ +++|+||+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~-~~~D~vi~av   65 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDLSLL-QTAKIIFLCT   65 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG-TTCSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhCCCC------------ccccCCHHHh-CCCCEEEEEC
Confidence            69999999999999999999998  8999999999988888765421            1345678887 8999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHH-HHhhcCCeEEEEe-c
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFAL-ELMNKLPTAMVVA-S  283 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~-ev~~g~~t~i~ia-~  283 (420)
                      |++.+.++++++.++++++++|++++ ++.....+.+.+.+.+.++.  +++.  ...||.++. ++..+.++.++.. +
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~vv~~~-~~~~~~~~~~~~~~~~~~~~--~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~  142 (279)
T 2f1k_A           66 PIQLILPTLEKLIPHLSPTAIVTDVA-SVKTAIAEPASQLWSGFIGG--HPMAGTAAQGIDGAEENLFVNAPYVLTPTEY  142 (279)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECC-SCCHHHHHHHHHHSTTCEEE--EECCCCSCSSGGGCCTTTTTTCEEEEEECTT
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEECC-CCcHHHHHHHHHHhCCEeec--CcccCCccCCHHHHhHHHhCCCcEEEecCCC
Confidence            99999999999999998899999874 34332222222222211111  1111  233566554 3444545544443 3


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHH-HHHHHHHHHhccc-c----hhHHHHHHHHHHHHHHHHHHHc
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNV-LAIAAGIVVGMNL-G----NNSMAALVAQGCSEIRWLATKM  357 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv-~Ai~~G~~~gl~l-g----~N~~~al~~~~~~E~~~lA~a~  357 (420)
                      .+++..+.++++|+..|++++..+|..+.+|.++++|. ..++.++.+++.. +    .+....++.+++.|+.+++   
T Consensus       143 ~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~---  219 (279)
T 2f1k_A          143 TDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVG---  219 (279)
T ss_dssp             CCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGG---
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhccc---
Confidence            47888999999999999999999999999999999995 5666677666543 2    2567788899999998887   


Q ss_pred             CCChhhhhhc
Q 014700          358 GAKPATITGL  367 (420)
Q Consensus       358 Gi~~~t~~~l  367 (420)
                      +.+|+.+.+.
T Consensus       220 ~~~p~~~~~~  229 (279)
T 2f1k_A          220 GGNPELGTMM  229 (279)
T ss_dssp             GSCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            4677776653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.84  E-value=7.3e-20  Score=187.67  Aligned_cols=221  Identities=12%  Similarity=0.113  Sum_probs=168.8

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhc
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTAL  197 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal  197 (420)
                      .+..|..|||+|.||.++|..|+++|  |+|++||+++++++.+++. ..+.|.++..       .+.++.+++|+    
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G--~~V~~~D~~~~kv~~L~~g-~~pi~epgl~~ll~~~~~~g~l~~ttd~----   81 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNG-QISIEEPGLQEVYEEVLSSGKLKVSTTP----   81 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEESSC----
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHCC-CCCcCCCCHHHHHHhhcccCceEEeCch----
Confidence            34579999999999999999999999  9999999999999999974 4555666643       14568888773    


Q ss_pred             cCCcEEEEccChhh------------HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCCeEEEEC
Q 014700          198 LGADYCLHAMPVQF------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSG  264 (420)
Q Consensus       198 ~~aDiVIlaVp~~~------------l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~-~~~~~vl~G  264 (420)
                      ++||+||+|||+..            ++.+.+++.++++++++||..+ ++.+.+.+.+.+.+.+..|.. ..++.++++
T Consensus        82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S-TV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~  160 (431)
T 3ojo_A           82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES-TIAPKTMDDFVKPVIENLGFTIGEDIYLVHC  160 (431)
T ss_dssp             CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS-CCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred             hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec-CCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence            47999999999753            7888899999999999888776 788888777776665544431 245789999


Q ss_pred             cccHHHHh----hcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 014700          265 PSFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMA  340 (420)
Q Consensus       265 P~~a~ev~----~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~  340 (420)
                      |.+..+..    ...+..+ +++.+++.+++++++|+..+-...+..++...|..                 |+.+|...
T Consensus       161 Pe~~~~G~A~~~~~~p~~I-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~-----------------Kl~~N~~~  222 (431)
T 3ojo_A          161 PERVLPGKILEELVHNNRI-IGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMS-----------------KLMENTYR  222 (431)
T ss_dssp             CCCCCTTSHHHHHHHSCEE-EEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHH-----------------HHHHHHHH
T ss_pred             CCcCCCcchhhcccCCCEE-EEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHH-----------------HHHHHHHH
Confidence            97764321    1234455 45557899999999999876554555666554444                 45677788


Q ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhhccccc
Q 014700          341 ALVAQGCSEIRWLATKMGAKPATITGLSGTG  371 (420)
Q Consensus       341 al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~g  371 (420)
                      ++....++|+..+|+++|+|++.+++..+..
T Consensus       223 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~  253 (431)
T 3ojo_A          223 DVNIALANELTKICNNLNINVLDVIEMANKH  253 (431)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHccC
Confidence            8889999999999999999999998866543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.83  E-value=4.4e-20  Score=191.62  Aligned_cols=228  Identities=15%  Similarity=0.177  Sum_probs=168.1

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC--C----CCceEEeCCHHHhc
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L----PENVIATTDAKTAL  197 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~--l----~~~i~a~td~~eal  197 (420)
                      |+.+|||+|||+|.||.++|..|+++|.+++|++|||++++++.+++.+ ...+.++..  +    ..++.+++++++++
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~-~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPT-LPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            4557899999999999999999999932289999999999999887643 333444321  1    13578888998888


Q ss_pred             cCCcEEEEccChhh---------------HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE
Q 014700          198 LGADYCLHAMPVQF---------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL  262 (420)
Q Consensus       198 ~~aDiVIlaVp~~~---------------l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl  262 (420)
                      ++||+||+|||...               +.++++++.++++++++||..++ +.+.+.+.+.+.+.+. +.....+.+.
T Consensus        81 ~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST-v~~g~~~~l~~~l~~~-~~~~~d~~V~  158 (467)
T 2q3e_A           81 KEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKST-VPVRAAESIRRIFDAN-TKPNLNLQVL  158 (467)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSC-CCTTHHHHHHHHHHHT-CCTTCEEEEE
T ss_pred             hcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCc-CCchHHHHHHHHHHHh-CCCCCCeEEE
Confidence            99999999998533               67888889998888998888764 5665555566666654 2212345677


Q ss_pred             ECcccHHHHh----hcCCeEEEEec----CCHHHHHHHHHHHhcC-CceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcc
Q 014700          263 SGPSFALELM----NKLPTAMVVAS----KDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN  333 (420)
Q Consensus       263 ~GP~~a~ev~----~g~~t~i~ia~----~d~e~~~~l~~ll~~~-g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~  333 (420)
                      ++|.++.+..    ...+..+++++    .+++..++++++|+.. +..+++..|+...+|.|++               
T Consensus       159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~---------------  223 (467)
T 2q3e_A          159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLA---------------  223 (467)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHH---------------
T ss_pred             eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHH---------------
Confidence            8888765311    12333455666    3677889999999987 6556666777666776544               


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccc
Q 014700          334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTG  371 (420)
Q Consensus       334 lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~g  371 (420)
                        .|...++....++|+..+|+++|++++++.+..+..
T Consensus       224 --~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  259 (467)
T 2q3e_A          224 --ANAFLAQRISSINSISALCEATGADVEEVATAIGMD  259 (467)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence              455677888999999999999999999998876544

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.82  E-value=8.7e-20  Score=176.97  Aligned_cols=222  Identities=17%  Similarity=0.127  Sum_probs=155.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +||||+|||+|.||.++|..|+++|  ++|++|+ ++++++.+.+.|              +...++++++++++|+||+
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~-~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~vi~   64 (295)
T 1yb4_A            2 NAMKLGFIGLGIMGSPMAINLARAG--HQLHVTT-IGPVADELLSLG--------------AVNVETARQVTEFADIIFI   64 (295)
T ss_dssp             --CEEEECCCSTTHHHHHHHHHHTT--CEEEECC-SSCCCHHHHTTT--------------CBCCSSHHHHHHTCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCC--CEEEEEc-CHHHHHHHHHcC--------------CcccCCHHHHHhcCCEEEE
Confidence            4689999999999999999999998  8999999 887777776643              2234578888889999999


Q ss_pred             ccChhh-HHHHHH---HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHH--hhcCCeEE
Q 014700          206 AMPVQF-SSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAM  279 (420)
Q Consensus       206 aVp~~~-l~~vl~---~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev--~~g~~t~i  279 (420)
                      |+|... +++++.   ++.+.++++++||++++|. +.+.+.+.+.+.+.      .+.++..|......  ..+.. .+
T Consensus        65 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~------g~~~~~~p~~~~~~~a~~g~~-~~  136 (295)
T 1yb4_A           65 MVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS-PIETKRFAQRVNEM------GADYLDAPVSGGEIGAREGTL-SI  136 (295)
T ss_dssp             CCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC-HHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCE-EE
T ss_pred             ECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHc------CCeEEEccCCCCHHHHHcCCe-EE
Confidence            998654 888887   7888888899999998863 22223344444331      23344555443321  12332 23


Q ss_pred             EEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCC
Q 014700          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (420)
Q Consensus       280 ~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi  359 (420)
                       +.+.+++..++++++|+..|+.+++.++.....|.|++                 +|....++..++.|+..++++.|+
T Consensus       137 -~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~-----------------~n~~~~~~~~~~~E~~~l~~~~G~  198 (295)
T 1yb4_A          137 -MVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVA-----------------NQIIVALNIEAVSEALVFASKAGA  198 (295)
T ss_dssp             -EEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -EECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence             34458888999999999999988887776555555543                 445566778899999999999999


Q ss_pred             Chhhhhhccccchh-----hhhhcccCCCCcccccc
Q 014700          360 KPATITGLSGTGDI-----MLTCFVNLSRNRTVGVR  390 (420)
Q Consensus       360 ~~~t~~~l~g~gdl-----~~t~~~~~sRn~~~G~~  390 (420)
                      +++++.++...++.     .........|+++.|+.
T Consensus       199 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~  234 (295)
T 1yb4_A          199 DPVRVRQALMGGFASSRILEVHGERMINRTFEPGFK  234 (295)
T ss_dssp             CHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSB
T ss_pred             CHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCc
Confidence            99988876543331     11122344566666654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.82  E-value=9.6e-20  Score=186.63  Aligned_cols=212  Identities=23%  Similarity=0.232  Sum_probs=155.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC--C---CCceEEeCCHHHhccCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L---PENVIATTDAKTALLGA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~--l---~~~i~a~td~~eal~~a  200 (420)
                      .+|||+|||+|.||.++|..|++ |  ++|++||+++++++.+++. ..+.+.++..  +   ..++.+++|+++++++|
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~~v~~l~~g-~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a  110 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQAKVDMLNQK-ISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA  110 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHHHHHHHHTT-CCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHHHhhHHhcc-CCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence            47899999999999999999998 8  9999999999999999873 3333333221  1   23688999999999999


Q ss_pred             cEEEEccChh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700          201 DYCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (420)
Q Consensus       201 DiVIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~  269 (420)
                      |+||+|||+.           +++++++.+.+ ++++++||..+ ++.+.+.+.+.+.+    +.  .  .+.+.|.+..
T Consensus       111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S-Tv~pgtt~~l~~~l----~~--~--~v~~sPe~~~  180 (432)
T 3pid_A          111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS-TIPVGFTRDIKERL----GI--D--NVIFSPEFLR  180 (432)
T ss_dssp             SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS-CCCTTHHHHHHHHH----TC--C--CEEECCCCCC
T ss_pred             CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC-CCChHHHHHHHHHH----hh--c--cEeecCccCC
Confidence            9999999975           68899999999 88999998766 57777655554433    32  1  2445777654


Q ss_pred             HHh----hcCCeEEEEecCCHHHHHHHHHHHhc--C--CceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 014700          270 ELM----NKLPTAMVVASKDRKLANAVQQLLAS--K--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (420)
Q Consensus       270 ev~----~g~~t~i~ia~~d~e~~~~l~~ll~~--~--g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~a  341 (420)
                      +..    ...+..+++++ +.+.++++.++|..  .  +..+.. .++...|+                 .|+.+|...+
T Consensus       181 ~G~A~~~~l~p~rIvvG~-~~~~~~~~~~ll~~~~~~~~~~v~~-~~~~~AE~-----------------~Kl~~N~~~a  241 (432)
T 3pid_A          181 EGRALYDNLHPSRIVIGE-RSARAERFADLLKEGAIKQDIPTLF-TDSTEAEA-----------------IKLFANTYLA  241 (432)
T ss_dssp             TTSHHHHHHSCSCEEESS-CSHHHHHHHHHHHHHCSSSSCCEEE-CCHHHHHH-----------------HHHHHHHHHH
T ss_pred             cchhhhcccCCceEEecC-CHHHHHHHHHHHHhhhccCCCeEEe-cCccHHHH-----------------HHHHHHHHHH
Confidence            321    12333455554 45677889999975  2  223443 45544444                 4466788888


Q ss_pred             HHHHHHHHHHHHHHHcCCChhhhhhcccc
Q 014700          342 LVAQGCSEIRWLATKMGAKPATITGLSGT  370 (420)
Q Consensus       342 l~~~~~~E~~~lA~a~Gi~~~t~~~l~g~  370 (420)
                      +....++|+..+|+++|+|++++++..+.
T Consensus       242 ~~Ia~~nEl~~lae~~GiD~~~v~~~~~~  270 (432)
T 3pid_A          242 LRVAYFNELDSYAESQGLNSKQIIEGVCL  270 (432)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHcc
Confidence            99999999999999999999999886553

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.81  E-value=1.2e-19  Score=189.00  Aligned_cols=212  Identities=9%  Similarity=0.079  Sum_probs=152.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc---cCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal---~~aDiVI  204 (420)
                      |||+|||+|.||.++|..|+++|  ++|.+|+|++++++.+.+...     ++    .++..++++++++   +++|+||
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~-----~g----~gi~~~~~~~e~v~~l~~aDvVi   71 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEA-----KG----TKVLGAHSLEEMVSKLKKPRRII   71 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTT-----TT----SSCEECSSHHHHHHHBCSSCEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhccc-----cC----CCeEEeCCHHHHHhhccCCCEEE
Confidence            78999999999999999999998  899999999999988887210     01    2356677888876   4899999


Q ss_pred             EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      +|||+. .++++++++.++++++++||+++||...++ ..+.+.+.+. |     +.++.+|....+...+.+..++.+ 
T Consensus        72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~-~~l~~~l~~~-g-----~~~v~~pv~g~~~~a~~g~~i~~g-  143 (482)
T 2pgd_A           72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDT-MRRCRDLKDK-G-----ILFVGSGVSGGEDGARYGPSLMPG-  143 (482)
T ss_dssp             ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHH-HHHHHHHHHT-T-----CEEEEEEEESHHHHHHHCCEEEEE-
T ss_pred             EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHc-C-----CeEeCCCCCCChhhhccCCeEEeC-
Confidence            999985 799999999999999999999999876543 2234444432 2     234455655444332223344444 


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHc-CCChh
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM-GAKPA  362 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~-Gi~~~  362 (420)
                      .+++..++++++|+..+.++.  ++..+..+.+        ..|....+|+.+|....++.+++.|+.+++++. |++++
T Consensus       144 g~~e~~~~v~~ll~~~g~~v~--d~~~~~~~~g--------~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~  213 (482)
T 2pgd_A          144 GNKEAWPHIKAIFQGIAAKVG--TGEPCCDWVG--------DDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHK  213 (482)
T ss_dssp             ECTTTHHHHHHHHHHHSCBCT--TSCBSCCCCE--------ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHH
T ss_pred             CCHHHHHHHHHHHHHhhhhcc--CCCcceEEEC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH
Confidence            467788999999998887651  1110000100        013344556778888888999999999999999 99999


Q ss_pred             hhhhcc
Q 014700          363 TITGLS  368 (420)
Q Consensus       363 t~~~l~  368 (420)
                      ++.++.
T Consensus       214 ~~~~~~  219 (482)
T 2pgd_A          214 EMAKAF  219 (482)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.81  E-value=4.2e-19  Score=178.27  Aligned_cols=206  Identities=8%  Similarity=0.045  Sum_probs=147.4

Q ss_pred             chhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          121 TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       121 ~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .++|..+|||+|||+|.||..||..|+++|  ++|++|+|++++++.+.+.+              +..+++++++++++
T Consensus        16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G--~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~a   79 (358)
T 4e21_A           16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGG--HECVVYDLNVNAVQALEREG--------------IAGARSIEEFCAKL   79 (358)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTT--------------CBCCSSHHHHHHHS
T ss_pred             chhhhcCCEEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCC--------------CEEeCCHHHHHhcC
Confidence            356777799999999999999999999998  99999999999998888754              23456888888888


Q ss_pred             ---cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCe
Q 014700          201 ---DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT  277 (420)
Q Consensus       201 ---DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t  277 (420)
                         |+||+|||...++++++++.+.++++++||+++++. +.+...+.+.+.+. |....+..+.+||..+.+   |.  
T Consensus        80 ~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~-g~~~vdapVsGg~~~a~~---G~--  152 (358)
T 4e21_A           80 VKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSH-YQDDIRRADQMRAQ-GITYVDVGTSGGIFGLER---GY--  152 (358)
T ss_dssp             CSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCC-HHHHHHHHHHHHTT-TCEEEEEEEECGGGHHHH---CC--
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-hHHHHHHHHHHHHC-CCEEEeCCCCCCHHHHhc---CC--
Confidence               999999998899999999999999999999998754 33333344444332 221123334444443332   43  


Q ss_pred             EEEEecCCHHHHHHHHHHHhcCC--------------------ceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh
Q 014700          278 AMVVASKDRKLANAVQQLLASKH--------------------LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (420)
Q Consensus       278 ~i~ia~~d~e~~~~l~~ll~~~g--------------------~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N  337 (420)
                      .+ +.+++++.+++++++|+..+                    ..+.+..+.-..++                 +|+.+|
T Consensus       153 ~i-m~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~-----------------~Kl~~n  214 (358)
T 4e21_A          153 CL-MIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHF-----------------VKMVHN  214 (358)
T ss_dssp             EE-EEESCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHH-----------------HHHHHH
T ss_pred             ee-eecCCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHH-----------------HHHHHH
Confidence            33 44567889999999999877                    35665655432233                 334456


Q ss_pred             HHHHHHHHHHHHHHHHHHHc------------------------CCChhhhhhc
Q 014700          338 SMAALVAQGCSEIRWLATKM------------------------GAKPATITGL  367 (420)
Q Consensus       338 ~~~al~~~~~~E~~~lA~a~------------------------Gi~~~t~~~l  367 (420)
                      .+......++.|...++++.                        |++++.+++.
T Consensus       215 ~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~  268 (358)
T 4e21_A          215 GIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEV  268 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHH
Confidence            66667778899999999998                        7888888764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.81  E-value=1.2e-19  Score=189.00  Aligned_cols=207  Identities=15%  Similarity=0.136  Sum_probs=149.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc---CCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~---~aDiVI  204 (420)
                      |||+|||+|.||+++|..|+++|  ++|++|+|++++++.+.+.+...   +   .+.++..++++++++.   ++|+||
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~g~~---~---~~~~i~~~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASA---P---FAGNLKAFETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTS---T---TGGGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCCC---C---CCCCeEEECCHHHHHhcccCCCEEE
Confidence            68999999999999999999998  89999999999999888752111   1   1234677788888766   599999


Q ss_pred             EccChh-hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH-HhhcCCeEEEEe
Q 014700          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-LMNKLPTAMVVA  282 (420)
Q Consensus       205 laVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e-v~~g~~t~i~ia  282 (420)
                      +|||+. .++++++++.+.++++++||+++||....+ ..+.+.+.+. |     ..++..|....+ .....+ .++++
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~-~~l~~~l~~~-g-----~~~v~~pv~gg~~~a~~g~-~i~~g  145 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQ-GRRAQQLEAA-G-----LRFLGMGISGGEEGARKGP-AFFPG  145 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHH-HHHHHHHHTT-T-----CEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHH-HHHHHHHHHC-C-----CeEEEeeccCCHHHHhcCC-eEecc
Confidence            999984 799999999999999999999999876443 2233444331 2     223333333222 222233 34444


Q ss_pred             cCCHHHHHHHHHHHhcCCce-------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014700          283 SKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT  355 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~-------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~  355 (420)
                       .+++..+.++++|+..+..       +.+..+.                 |....+|+.+|....++.+++.|+.++++
T Consensus       146 -g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~  207 (478)
T 1pgj_A          146 -GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG-----------------GAGSCVKMYHNSGEYAILQIWGEVFDILR  207 (478)
T ss_dssp             -ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCc-----------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence             4788899999999987765       2333221                 23334456678778888999999999999


Q ss_pred             HcCCChhhhhhcc
Q 014700          356 KMGAKPATITGLS  368 (420)
Q Consensus       356 a~Gi~~~t~~~l~  368 (420)
                      ++|++++++.++.
T Consensus       208 ~~G~~~~~~~~l~  220 (478)
T 1pgj_A          208 AMGLNNDEVAAVL  220 (478)
T ss_dssp             HTTCCHHHHHHHH
T ss_pred             HcCCCHHHHHHHH
Confidence            9999999888754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.80  E-value=1.5e-18  Score=176.93  Aligned_cols=213  Identities=18%  Similarity=0.164  Sum_probs=155.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-----CCCceEEeCCHHHhccCCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-----l~~~i~a~td~~eal~~aDi  202 (420)
                      |||+|||+|+||.++|..|++ |  |+|++|+|++++++.+++.+... +.++..     .+.++.++++++++++++|+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~~~~~~l~~~~~~i-~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDv   76 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILPSKVDKINNGLSPI-QDEYIEYYLKSKQLSIKATLDSKAAYKEAEL   76 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCHHHHHHHHTTCCSS-CCHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCHHHHHHHHcCCCCc-CCCCHHHHHHhccCcEEEeCCHHHHhcCCCE
Confidence            699999999999999999998 8  99999999999999998765321 111100     02246778888888889999


Q ss_pred             EEEccChh-----------hHHHHHHHhhhcCCCCCeEEE-eccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFIS-LSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       203 VIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs-~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      ||+|||+.           +++++++++.+ ++++++||. .+++.  .+.    +.+.+.++..    .++++|.+..+
T Consensus        77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~--g~~----~~l~~~~~~~----~v~~~Pe~~~~  145 (402)
T 1dlj_A           77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPI--GFI----TEMRQKFQTD----RIIFSPEFLRE  145 (402)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCT--THH----HHHHHHTTCS----CEEECCCCCCT
T ss_pred             EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCc--cHH----HHHHHHhCCC----eEEECCccccC
Confidence            99999986           59999999988 888998887 44443  332    3344444431    45677776543


Q ss_pred             Hh----hcCCeEEEEecCCH------HHHHHHHHHHhcCCce---EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh
Q 014700          271 LM----NKLPTAMVVASKDR------KLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (420)
Q Consensus       271 v~----~g~~t~i~ia~~d~------e~~~~l~~ll~~~g~~---v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N  337 (420)
                      ..    ...+..+++++.+.      +.++.+.++|...++.   ++...|+...+|.|++.|.                
T Consensus       146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~----------------  209 (402)
T 1dlj_A          146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANT----------------  209 (402)
T ss_dssp             TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHH----------------
T ss_pred             cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHH----------------
Confidence            11    12233455666541      5678899999765543   4667789999999877665                


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhhhhccccch
Q 014700          338 SMAALVAQGCSEIRWLATKMGAKPATITGLSGTGD  372 (420)
Q Consensus       338 ~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gd  372 (420)
                       ..++....++|+..+|+++|++.+.+.+..+.+.
T Consensus       210 -~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~  243 (402)
T 1dlj_A          210 -YLALRVAYFNELDTYAESRKLNSHMIIQGISYDD  243 (402)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred             -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC
Confidence             3456677899999999999999999998766554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.5e-19  Score=184.03  Aligned_cols=205  Identities=9%  Similarity=0.045  Sum_probs=150.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-hcCCCCCCCCCCCCCceEEeCCHHHhccC---CcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLG---ADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-~g~~~~~l~~~~l~~~i~a~td~~eal~~---aDi  202 (420)
                      ..+|+|||+|.||++||..|+++|  ++|++|+|++++++.+.+ ...      +    .++..+++++++++.   +|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~------~----~gi~~~~s~~e~v~~l~~aDv   77 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHG--FTVCAYNRTQSKVDHFLANEAK------G----KSIIGATSIEDFISKLKRPRK   77 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHHHTTTT------T----SSEECCSSHHHHHHTSCSSCE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHccccc------C----CCeEEeCCHHHHHhcCCCCCE
Confidence            359999999999999999999999  899999999999998887 311      0    245667788887776   999


Q ss_pred             EEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEE
Q 014700          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~i  281 (420)
                      ||+|||+ ..++++++++.+.++++++||+++++....+ ..+.+.+.+. |.     .++..|....+...+..+.++.
T Consensus        78 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~-~~l~~~l~~~-g~-----~~v~~pVsgg~~~a~~G~~im~  150 (497)
T 2p4q_A           78 VMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDS-NRRYEELKKK-GI-----LFVGSGVSGGEEGARYGPSLMP  150 (497)
T ss_dssp             EEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCCEEEE
T ss_pred             EEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHH-HHHHHHHHHc-CC-----ceeCCCcccChhHhhcCCeEEe
Confidence            9999998 5899999999999999999999998765433 2334444432 22     2333343322211111223444


Q ss_pred             ecCCHHHHHHHHHHHhcCCce------EEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014700          282 ASKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT  355 (420)
Q Consensus       282 a~~d~e~~~~l~~ll~~~g~~------v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~  355 (420)
                       +.+++..++++++|+..+..      +.+.++                 .|....+|+.+|.....+.+++.|+..+++
T Consensus       151 -gg~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~-----------------~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~  212 (497)
T 2p4q_A          151 -GGSEEAWPHIKNIFQSISAKSDGEPCCEWVGP-----------------AGAGHYVKMVHNGIEYGDMQLICEAYDIMK  212 (497)
T ss_dssp             -EECGGGHHHHHHHHHHHSCEETTEESCCCCEE-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHhcCccCCCCceEEECC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45778889999999987766      222222                 133445667788888889999999999999


Q ss_pred             H-cCCChhhhhhcc
Q 014700          356 K-MGAKPATITGLS  368 (420)
Q Consensus       356 a-~Gi~~~t~~~l~  368 (420)
                      + +|++++++.++.
T Consensus       213 ~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          213 RLGGFTDKEISDVF  226 (497)
T ss_dssp             HTTCCCHHHHHHHH
T ss_pred             HccCCCHHHHHHHH
Confidence            9 799999988765

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.79  E-value=1.5e-18  Score=172.52  Aligned_cols=226  Identities=20%  Similarity=0.172  Sum_probs=147.9

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCC--Cce-EEeCCHHHhccCCc
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP--ENV-IATTDAKTALLGAD  201 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~--~~i-~a~td~~eal~~aD  201 (420)
                      +.+|||+|||+|+||+.+|..|+++|  ++|++|+|++++++.+++.+.  .++.+..+.  ..+ ..+++++++++++|
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   77 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGA--IIAEGPGLAGTAHPDLLTSDIGLAVKDAD   77 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTS--EEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHhcCC--eEEeccccccccccceecCCHHHHHhcCC
Confidence            34589999999999999999999998  899999999999998887631  111111111  122 35678888888999


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--------CCCeE-EEECcccHHHHh
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--------RQPFI-ALSGPSFALELM  272 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--------~~~~~-vl~GP~~a~ev~  272 (420)
                      +||+|||+...+++++++.++++++++||++ +|+...+.+ +.+.+.+. +..        ..++. ...||+++....
T Consensus        78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~~~~~~~~-~~~~l~~~-~~~~v~~~~~~~~~~~~~~~gpg~v~~~~  154 (359)
T 1bg6_A           78 VILIVVPAIHHASIAANIASYISEGQLIILN-PGATGGALE-FRKILREN-GAPEVTIGETSSMLFTCRSERPGQVTVNA  154 (359)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SCCSSHHHH-HHHHHHHT-TCCCCEEEEESSCSEEEECSSTTEEEEEE
T ss_pred             EEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CCCchHHHH-HHHHHHhc-CCCCeEEEEecCCcEEEEeCCCCEEEEEE
Confidence            9999999999999999999999999998888 454433222 34444442 210        01222 234555433211


Q ss_pred             hcCCeEEEEe----cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHH--------HHHHHH----hcccc-
Q 014700          273 NKLPTAMVVA----SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAI--------AAGIVV----GMNLG-  335 (420)
Q Consensus       273 ~g~~t~i~ia----~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai--------~~G~~~----gl~lg-  335 (420)
                      . ... +.++    +.+++.++.++++|..  +  ..++|+    |.++++|+.++        .++..+    .+.++ 
T Consensus       155 ~-~~~-~~~g~~~~~~~~~~~~~l~~~~~~--~--~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~  224 (359)
T 1bg6_A          155 I-KGA-MDFACLPAAKAGWALEQIGSVLPQ--Y--VAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLE  224 (359)
T ss_dssp             E-CSC-EEEEEESGGGHHHHHHHHTTTCTT--E--EECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHH
T ss_pred             e-ecc-eEEEeccccccHHHHHHHHHHhhh--c--EEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhc
Confidence            0 011 1222    3445567788888854  3  345665    78888875443        222221    11112 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700          336 --NNSMAALVAQGCSEIRWLATKMGAKPATITGL  367 (420)
Q Consensus       336 --~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l  367 (420)
                        .+....++.++++|+.++++++|++++++.+.
T Consensus       225 ~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~  258 (359)
T 1bg6_A          225 GITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEW  258 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence              34467889999999999999999998777664

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.78  E-value=9.8e-18  Score=165.70  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=123.2

Q ss_pred             hhcCCCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          123 ILERTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       123 ~~~~~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      .++.+|||+|||+|+||++||..|.++|.  .++|++|+|+++  +++.+++.|              +.+++++.++++
T Consensus        18 ~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G--------------~~~~~~~~e~~~   83 (322)
T 2izz_A           18 LYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG--------------VKLTPHNKETVQ   83 (322)
T ss_dssp             ----CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT--------------CEEESCHHHHHH
T ss_pred             hccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC--------------CEEeCChHHHhc
Confidence            55667899999999999999999999862  168999999985  777777644              355667888888


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeE
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~  278 (420)
                      ++|+||+|||++.++++++++.+.++++++||++++|+..+   .+.+.+.+.++.   ...+...|+.+.++..+.  .
T Consensus        84 ~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~---~l~~~l~~~~~~---~~vv~~~p~~p~~~~~g~--~  155 (322)
T 2izz_A           84 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS---SIEKKLSAFRPA---PRVIRCMTNTPVVVREGA--T  155 (322)
T ss_dssp             HCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHH---HHHHHHHTTSSC---CEEEEEECCGGGGGTCEE--E
T ss_pred             cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHH---HHHHHHhhcCCC---CeEEEEeCCcHHHHcCCe--E
Confidence            99999999999999999999999998899999999998753   344455443332   123445566665554442  3


Q ss_pred             EEEecC--CHHHHHHHHHHHhcCCceEEEcCChh
Q 014700          279 MVVASK--DRKLANAVQQLLASKHLRISTSSDVT  310 (420)
Q Consensus       279 i~ia~~--d~e~~~~l~~ll~~~g~~v~~s~Di~  310 (420)
                      ++.++.  +.+..+.++++|+..|+.++..+|+.
T Consensus       156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~  189 (322)
T 2izz_A          156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI  189 (322)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHH
Confidence            333433  37888999999999999887776654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.78  E-value=6.1e-18  Score=166.02  Aligned_cols=199  Identities=15%  Similarity=0.107  Sum_probs=140.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+|||+|||+|.||.+||..|+++|  ++|++|+|+++.++.+.+.|              +...++++++++++|+||+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDvVi~   71 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSPGKAAALVAAG--------------AHLCESVKAALSASPATIF   71 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHT--------------CEECSSHHHHHHHSSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEE
Confidence            3689999999999999999999998  89999999999998888764              2456688998999999999


Q ss_pred             ccChh-hHHHHHH--HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          206 AMPVQ-FSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       206 aVp~~-~l~~vl~--~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |||.. .+++++.  .+.. +.++++||++++ +.+.+.+.+.+.+.+. |.     .++.+|........+.....++.
T Consensus        72 ~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st-~~~~~~~~l~~~~~~~-g~-----~~vdapv~g~~~~~~~~~~~i~~  143 (306)
T 3l6d_A           72 VLLDNHATHEVLGMPGVAR-ALAHRTIVDYTT-NAQDEGLALQGLVNQA-GG-----HYVKGMIVAYPRNVGHRESHSIH  143 (306)
T ss_dssp             CCSSHHHHHHHHTSTTHHH-HTTTCEEEECCC-CCTTHHHHHHHHHHHT-TC-----EEEEEEEESCGGGTTCTTCEEEE
T ss_pred             EeCCHHHHHHHhcccchhh-ccCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----eEEecccccCcccccCCceEEEE
Confidence            99965 4888886  6655 467899998875 5555545555555442 32     23333332211011111223445


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEEc--CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          283 SKDRKLANAVQQLLASKHLRISTS--SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~s--~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      +++++.+++++++|+..+-++++.  .+-.|  -+.++|                  ........++.|+..++++.|++
T Consensus       144 gg~~~~~~~~~~ll~~lg~~~~~~~~g~~~g--~g~~~k------------------~~~~~~~~~~~Ea~~la~~~Gld  203 (306)
T 3l6d_A          144 TGDREAFEQHRALLEGLAGHTVFLPWDEALA--FATVLH------------------AHAFAAMVTFFEAVGAGDRFGLP  203 (306)
T ss_dssp             EECHHHHHHHHHHHHTTCSEEEECCHHHHHH--HHHHHH------------------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCEEEecCCCCcc--HHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCC
Confidence            567899999999999986677665  43111  111222                  11223467899999999999999


Q ss_pred             hhhhhhcc
Q 014700          361 PATITGLS  368 (420)
Q Consensus       361 ~~t~~~l~  368 (420)
                      ++++++..
T Consensus       204 ~~~~~~~~  211 (306)
T 3l6d_A          204 VSKTARLL  211 (306)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.77  E-value=2.4e-18  Score=159.99  Aligned_cols=171  Identities=15%  Similarity=0.198  Sum_probs=132.0

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+|||+|||+|+||+++|..|+++|  ++|++|+|+++                                +++++|+||
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~--------------------------------~~~~aD~vi   62 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ--------------------------------ATTLGEIVI   62 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC--------------------------------CSSCCSEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH--------------------------------HhccCCEEE
Confidence            44789999999999999999999998  89999998653                                356899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCC-cc-------hhhhHHHHHHHHhCCCCCCeEEEE------CcccHHH
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE-LN-------TLRMMSQIIPQALRNPRQPFIALS------GPSFALE  270 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~-~~-------t~~~~se~l~~~lg~~~~~~~vl~------GP~~a~e  270 (420)
                      +|+|++.++++++++.+.++ +++|+++++|+. .+       +...+.+.+.+.++.    ..++.      +|.++.+
T Consensus        63 ~av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~----~~vv~~~~~~~~p~~~~~  137 (209)
T 2raf_A           63 MAVPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD----SQVLKAFNTTFAATLQSG  137 (209)
T ss_dssp             ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT----SEEEECSTTSCHHHHHHS
T ss_pred             EcCCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC----CcEEEeeecccHhhcccc
Confidence            99999999999999988887 899999999987 33       333456777777653    12333      6777665


Q ss_pred             Hhhc-CCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchh
Q 014700          271 LMNK-LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (420)
Q Consensus       271 v~~g-~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N  337 (420)
                      ...+ .+..+.+++.+++..+.++++|+..|++++..+|+..   +.++||+.++..++..+.+++.|
T Consensus       138 ~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~~---a~~~K~i~~l~~~~~~~~g~g~~  202 (209)
T 2raf_A          138 QVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKR---ARELEAMGFMQMTLAASEQIGWT  202 (209)
T ss_dssp             EETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGGG---HHHHHHHHHHHHHHHHTTSSCTT
T ss_pred             ccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHhH---HHHhcchHHHHHHHHHHcCCCch
Confidence            4333 3344556777788899999999999999998888654   55678888888888887766654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.76  E-value=2.5e-18  Score=164.30  Aligned_cols=212  Identities=11%  Similarity=0.125  Sum_probs=144.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r--~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|+||.++|..|+++|  ++|++|+|  +++.++.+.+.|.              .  ++++++++++|+||+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g--~~V~~~~~~~~~~~~~~~~~~g~--------------~--~~~~~~~~~aDvvi~   62 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVGV--------------T--ETSEEDVYSCPVVIS   62 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHTC--------------E--ECCHHHHHTSSEEEE
T ss_pred             CeEEEEechHHHHHHHHHHHHCC--CeEEEeCCccCHHHHHHHHHCCC--------------c--CCHHHHHhcCCEEEE
Confidence            69999999999999999999998  89999999  7777777776542              2  466777889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~-~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      |||++...+.+.++.+.+++  +||+++ ++.+.+.    +.+.+.++.. .....++.+|.   ....+.+  +++++.
T Consensus        63 ~v~~~~~~~~~~~~~~~~~~--~vi~~s-~~~~~~~----~~l~~~~~~~g~~~~~v~~~~~---~~~~g~~--~~~~g~  130 (264)
T 1i36_A           63 AVTPGVALGAARRAGRHVRG--IYVDIN-NISPETV----RMASSLIEKGGFVDAAIMGSVR---RKGADIR--IIASGR  130 (264)
T ss_dssp             CSCGGGHHHHHHHHHTTCCS--EEEECS-CCCHHHH----HHHHHHCSSSEEEEEEECSCHH---HHGGGCE--EEEEST
T ss_pred             ECCCHHHHHHHHHHHHhcCc--EEEEcc-CCCHHHH----HHHHHHHhhCCeeeeeeeCCcc---ccccCCe--EEecCC
Confidence            99987655556778777765  777764 5665432    2344444331 01122333332   2223433  445554


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCC-hhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhh
Q 014700          285 DRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~D-i~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t  363 (420)
                      +.   +++++ |+..|..++..++ +....|.|                 +..|.....+..++.|+..+++++|++++.
T Consensus       131 ~~---~~~~~-l~~~g~~~~~~~~~~g~~~~~k-----------------l~~n~~~~~~~~~~~Ea~~la~~~G~~~~~  189 (264)
T 1i36_A          131 DA---EEFMK-LNRYGLNIEVRGREPGDASAIK-----------------MLRSSYTKGVSALLWETLTAAHRLGLEEDV  189 (264)
T ss_dssp             TH---HHHHG-GGGGTCEEEECSSSTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cH---HHhhh-HHHcCCeeEECCCCcCHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            43   78888 9999988766554 54444544                 345555567788999999999999999874


Q ss_pred             hhhccc-cc-hhhhhhcccCCCCcccccc
Q 014700          364 ITGLSG-TG-DIMLTCFVNLSRNRTVGVR  390 (420)
Q Consensus       364 ~~~l~g-~g-dl~~t~~~~~sRn~~~G~~  390 (420)
                      +..+.+ .| ++..++.+..+||++.|+.
T Consensus       190 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  218 (264)
T 1i36_A          190 LEMLEYTEGNDFRESAISRLKSSCIHARR  218 (264)
T ss_dssp             HHHHHTTSCSSTHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHhcCccHHHHHHHHhcCCCCcchh
Confidence            322333 23 4545566666788888875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.76  E-value=4.3e-18  Score=161.83  Aligned_cols=179  Identities=19%  Similarity=0.224  Sum_probs=123.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH--------------HHHHHHhcCCCCCCCCCCCCCceEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--------------CQSINEKHCNCRYFPEQKLPENVIATTD  192 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~--------------~~~i~~~g~~~~~l~~~~l~~~i~a~td  192 (420)
                      .|||+|||+|.||.+||..|+++|  ++|++|+|+++.              .+.+.+..           . . ...++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~-~~~~~   83 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-----------P-H-VHLAA   83 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHTCC-------CCHHHHGGGS-----------T-T-CEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-----------C-c-eeccC
Confidence            689999999999999999999998  999999999886              33332210           0 1 22357


Q ss_pred             HHHhccCCcEEEEccChhhHHHHHHHh-hhcCCCCCeEEEeccCC----------CcchhhhHHHHHHHHhCCCC--CCe
Q 014700          193 AKTALLGADYCLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGL----------ELNTLRMMSQIIPQALRNPR--QPF  259 (420)
Q Consensus       193 ~~eal~~aDiVIlaVp~~~l~~vl~~i-~~~l~~~~iVVs~snGi----------~~~t~~~~se~l~~~lg~~~--~~~  259 (420)
                      +++++++||+||+|||++...+++.++ .+.+ ++++||+++||+          ++++...+.+.+.+.++...  ..+
T Consensus        84 ~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~  162 (245)
T 3dtt_A           84 FADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTL  162 (245)
T ss_dssp             HHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECS
T ss_pred             HHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEee
Confidence            788889999999999999988999888 7777 789999999764          33444567788888765310  000


Q ss_pred             EEEECcccHHHHh-hcCCeEEEEecCCHHHHHHHHHHHhcCCce-EEEcCChhHHHHHHHHHHH
Q 014700          260 IALSGPSFALELM-NKLPTAMVVASKDRKLANAVQQLLASKHLR-ISTSSDVTGVEIAGALKNV  321 (420)
Q Consensus       260 ~vl~GP~~a~ev~-~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~-v~~s~Di~g~e~~~alkNv  321 (420)
                      .++.+|....... ...+..+++++.+++..++++++|+..|++ +++..++-.....+.+.|+
T Consensus       163 ~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~  226 (245)
T 3dtt_A          163 NTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPV  226 (245)
T ss_dssp             TTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHH
T ss_pred             cccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHH
Confidence            1112222221111 122334566777899999999999999985 5667776444444444443

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.74  E-value=1.5e-16  Score=151.16  Aligned_cols=229  Identities=14%  Similarity=0.183  Sum_probs=137.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC----eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL----KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~----~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      +|||+|||+|+||.+++..|.++|  +    +|++|+|++++++.+.+..             ++..+++++++++++|+
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g--~~~~~~V~~~~r~~~~~~~~~~~~-------------g~~~~~~~~e~~~~aDv   66 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKN--IVSSNQIICSDLNTANLKNASEKY-------------GLTTTTDNNEVAKNADI   66 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--SSCGGGEEEECSCHHHHHHHHHHH-------------CCEECSCHHHHHHHCSE
T ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CCCCCeEEEEeCCHHHHHHHHHHh-------------CCEEeCChHHHHHhCCE
Confidence            479999999999999999999998  7    9999999999988887531             23556788888899999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||+|||++.++++++++.++++++++||++++|+..+       .+.+.++..  ...+..-|+.+.....+. +.++..
T Consensus        67 Vilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~-------~l~~~~~~~--~~~v~~~p~~p~~~~~g~-~~~~~~  136 (247)
T 3gt0_A           67 LILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIE-------STENAFNKK--VKVVRVMPNTPALVGEGM-SALCPN  136 (247)
T ss_dssp             EEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHH-------HHHHHHCSC--CEEEEEECCGGGGGTCEE-EEEEEC
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHH-------HHHHHhCCC--CcEEEEeCChHHHHcCce-EEEEeC
Confidence            9999999999999999999999999999999998753       344444431  122334466554433332 222222


Q ss_pred             -cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCCh
Q 014700          283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (420)
Q Consensus       283 -~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~  361 (420)
                       ..+++..++++++|+..|..++..++.. ....        ...|..       +.....+..++.|.   +.++|+++
T Consensus       137 ~~~~~~~~~~~~~l~~~~G~~~~~~e~~~-d~~~--------a~~g~g-------pa~~~~~~eal~~a---~~~~Gl~~  197 (247)
T 3gt0_A          137 EMVTEKDLEDVLNIFNSFGQTEIVSEKLM-DVVT--------SVSGSS-------PAYVYMIIEAMADA---AVLDGMPR  197 (247)
T ss_dssp             TTCCHHHHHHHHHHHGGGEEEEECCGGGH-HHHH--------HHHHHH-------HHHHHHHHHHHHHH---HHHTTCCH
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEEeCHHHc-cHHH--------HHhccH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence             3578889999999999998555543321 1111        011111       11122223333332   78899999


Q ss_pred             hhhhhcc-----ccchhhhhhcccCCCCccccccccCCCChHHHHHHc----CCcccccchhh
Q 014700          362 ATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM----NQVLVNPSMQP  415 (420)
Q Consensus       362 ~t~~~l~-----g~gdl~~t~~~~~sRn~~~G~~l~~g~~~~~~~~~~----~~~~eG~~t~~  415 (420)
                      +..+++.     |...+.                +..|+++++..++.    +.+++|++..+
T Consensus       198 ~~a~~~~~~~~~gs~~~~----------------~~~~~~p~~l~~~v~spgG~t~~gl~~le  244 (247)
T 3gt0_A          198 NQAYKFAAQAVLGSAKMV----------------LETGIHPGELKDMVCSPGGTTIEAVATLE  244 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------------HHSCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHH----------------HHcCCCHHHHHHhcCCCCchHHHHHHHHH
Confidence            9888754     222222                22445555555544    56788877653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.74  E-value=3.2e-18  Score=165.15  Aligned_cols=177  Identities=14%  Similarity=0.159  Sum_probs=125.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiV  203 (420)
                      ||||+|||+|.||.++|..|.++|  +  +|++|+|+++..+.+.+.|..            ...+++++++++ ++|+|
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g--~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV   66 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGGGGTCCSEE
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHCCCc------------ccccCCHHHHhcCCCCEE
Confidence            479999999999999999999988  7  899999999888887765421            123457778888 99999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH-HhCCCCCCeE--EEECcccHH-HHhhcCCeEE
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ-ALRNPRQPFI--ALSGPSFAL-ELMNKLPTAM  279 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~-~lg~~~~~~~--vl~GP~~a~-ev~~g~~t~i  279 (420)
                      |+|||.+.+.++++++.++++++++|++++++ .....+.+.+.+.+ .++.  +++.  ..+||.++. ++..+.++.+
T Consensus        67 ilavp~~~~~~v~~~l~~~l~~~~iv~~~~~~-~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~  143 (281)
T 2g5c_A           67 MLSSPVRTFREIAKKLSYILSEDATVTDQGSV-KGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVIL  143 (281)
T ss_dssp             EECSCHHHHHHHHHHHHHHSCTTCEEEECCSC-CTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEE
T ss_pred             EEcCCHHHHHHHHHHHHhhCCCCcEEEECCCC-cHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEE
Confidence            99999999999999999989889888887653 33222333444433 1121  1111  123555543 2334444433


Q ss_pred             EEe-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHH
Q 014700          280 VVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN  320 (420)
Q Consensus       280 ~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkN  320 (420)
                      +.. +.+.+..+.++++|+..|++++..++..+..|.++.-|
T Consensus       144 ~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~  185 (281)
T 2g5c_A          144 TPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSH  185 (281)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTH
T ss_pred             ecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence            222 56788899999999999999888887766666655444

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.74  E-value=2e-16  Score=153.49  Aligned_cols=153  Identities=19%  Similarity=0.246  Sum_probs=119.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~---~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      +|||+|||+|+||.+++..|.++|  +   +|++|+|++++++.+.+..             ++..+++..++++++|+|
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g--~~~~~V~v~dr~~~~~~~l~~~~-------------gi~~~~~~~~~~~~aDvV   67 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANG--YDPNRICVTNRSLDKLDFFKEKC-------------GVHTTQDNRQGALNADVV   67 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTT--CCGGGEEEECSSSHHHHHHHHTT-------------CCEEESCHHHHHSSCSEE
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCC--CCCCeEEEEeCCHHHHHHHHHHc-------------CCEEeCChHHHHhcCCeE
Confidence            589999999999999999999998  7   9999999999988888741             245667888889999999


Q ss_pred             EEccChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          204 LHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      |+|||++.++++++++.++ ++++++||++++|+..+       .+.+.++.. .. .+...|+.+..+..+.  ..+..
T Consensus        68 ilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~-------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~--~~l~~  136 (280)
T 3tri_A           68 VLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTP-------LIEKWLGKA-SR-IVRAMPNTPSSVRAGA--TGLFA  136 (280)
T ss_dssp             EECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHH-------HHHHHHTCC-SS-EEEEECCGGGGGTCEE--EEEEC
T ss_pred             EEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHH-------HHHHHcCCC-Ce-EEEEecCChHHhcCcc--EEEEe
Confidence            9999999999999999998 88888999999998753       344555432 12 2445577765544332  22222


Q ss_pred             c--CCHHHHHHHHHHHhcCCceEEE
Q 014700          283 S--KDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       283 ~--~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      +  .+++..+.++++|+..|..++.
T Consensus       137 ~~~~~~~~~~~v~~l~~~iG~~~~v  161 (280)
T 3tri_A          137 NETVDKDQKNLAESIMRAVGLVIWV  161 (280)
T ss_dssp             CTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCeEEE
Confidence            2  3678899999999999976554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.74  E-value=1.1e-16  Score=164.25  Aligned_cols=220  Identities=16%  Similarity=0.159  Sum_probs=165.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-------CCCceEEeCCHHHhcc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALL  198 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-------l~~~i~a~td~~eal~  198 (420)
                      .|.+|+|||+|.||..+|..|++.|  |+|+.+|.++++++.|++ |..+.+.|+..       -..++++++|+++++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~kV~~ln~-G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPSIVERLRA-GRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHT-TCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence            4679999999999999999999999  999999999999999987 44455555532       1346889999999999


Q ss_pred             CCcEEEEccCh----------hhHHHHHHHhhhcCC---CCCeEEEeccCCCcchhhhH-HHHHHHHhCCCCCCeEEEEC
Q 014700          199 GADYCLHAMPV----------QFSSSFLEGISDYVD---PGLPFISLSKGLELNTLRMM-SQIIPQALRNPRQPFIALSG  264 (420)
Q Consensus       199 ~aDiVIlaVp~----------~~l~~vl~~i~~~l~---~~~iVVs~snGi~~~t~~~~-se~l~~~lg~~~~~~~vl~G  264 (420)
                      ++|++|+|||.          .+++++++.|.++++   ++++||.-+ .+.+.+.+.+ ...+.+..+.  ..+.+.+.
T Consensus        97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS-TVppGtte~~~~~~l~~~~~~--~~f~v~~~  173 (444)
T 3vtf_A           97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS-TVPPGTTEGLVARAVAEEAGG--VKFSVASN  173 (444)
T ss_dssp             TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS-CCCTTTTTTHHHHHHHTTTTT--CCCEEEEC
T ss_pred             cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC-CCCCchHHHHHHHHHHHhCCC--CCceeecC
Confidence            99999999984          257888888888774   466777655 3666665543 3444444333  46778889


Q ss_pred             cccHHHHh----hcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 014700          265 PSFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMA  340 (420)
Q Consensus       265 P~~a~ev~----~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~  340 (420)
                      |.+..+..    ...+..+++++.++...+.+.++++.....+.. .++..+|+.|                 +..|...
T Consensus       174 PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~K-----------------l~eN~~r  235 (444)
T 3vtf_A          174 PEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLV-MKPREAELVK-----------------YASNVFL  235 (444)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHH-----------------HHHHHHH
T ss_pred             cccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEE-echhHHHHHH-----------------HHHHHHH
Confidence            98775421    123445677888888888899999876655443 4666666655                 4567778


Q ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhhccc
Q 014700          341 ALVAQGCSEIRWLATKMGAKPATITGLSG  369 (420)
Q Consensus       341 al~~~~~~E~~~lA~a~Gi~~~t~~~l~g  369 (420)
                      ++....++|+..+|+++|+|...+.+.+|
T Consensus       236 avnIa~~NEla~ice~~GiDv~eV~~a~~  264 (444)
T 3vtf_A          236 ALKISFANEVGLLAKRLGVDTYRVFEAVG  264 (444)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence            88889999999999999999888877554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.73  E-value=6.5e-17  Score=151.23  Aligned_cols=170  Identities=14%  Similarity=0.224  Sum_probs=126.7

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      +.||||+|||+|+||.++|..|+++|  ++|++ |+|++++++.+.+...             +....+..++++++|+|
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~~~~~~l~~~~g-------------~~~~~~~~~~~~~aDvV   85 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGPASLSSVTDRFG-------------ASVKAVELKDALQADVV   85 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCGGGGHHHHHHHT-------------TTEEECCHHHHTTSSEE
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCHHHHHHHHHHhC-------------CCcccChHHHHhcCCEE
Confidence            44789999999999999999999998  89999 9999998888765421             11122334557899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC-----cc--hhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhh---
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE-----LN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMN---  273 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~-----~~--t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~---  273 (420)
                      |+|||.+.++++++++.+ + ++++||++++|++     .+  +.....+.+.+.++..   -.+..-|+....+..   
T Consensus        86 ilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~---~vv~~~~~~~~~v~~~g~  160 (220)
T 4huj_A           86 ILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA---KVVKAFNTLPAAVLAADP  160 (220)
T ss_dssp             EEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---EEEEESCSSCHHHHTSCS
T ss_pred             EEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---CEEECCCCCCHHHhhhCc
Confidence            999999999999999887 5 5889999999985     11  1223566777776531   233444554444333   


Q ss_pred             ---cCCeEEEEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHH
Q 014700          274 ---KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEI  314 (420)
Q Consensus       274 ---g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~  314 (420)
                         +.+..+++++.+++..+.++++|+..|++++..+++....|
T Consensus       161 ~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~  204 (220)
T 4huj_A          161 DKGTGSRVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAASGP  204 (220)
T ss_dssp             BCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHH
T ss_pred             ccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcch
Confidence               12355677888899999999999999999999988765433

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.70  E-value=8.7e-16  Score=146.90  Aligned_cols=195  Identities=14%  Similarity=0.108  Sum_probs=133.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||+|||+|.||..+|..|+++|  ++ |.+|+|+++.++.+.+..             ++..+++++++++++|+||+
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g--~~~v~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKG--FRIVQVYSRTEESARELAQKV-------------EAEYTTDLAEVNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSHHHHHHHHHHT-------------TCEEESCGGGSCSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCEEEE
Confidence            479999999999999999999998  78 899999999888887641             23456688888889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~--~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |+|...++++++++.+.++++++||++++|+..+.       +.+.++..  .++...+.|+...  ...+.+  +++.+
T Consensus        75 av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~-------l~~~~~~~~~~~~~~~~~g~~~~--~~~~~~--~~v~~  143 (266)
T 3d1l_A           75 SLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNV-------WEGHVPHYGVFYPMQTFSKQREV--DFKEIP--FFIEA  143 (266)
T ss_dssp             CCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG-------STTTCSSEEEEEECCCC---CCC--CCTTCC--EEEEE
T ss_pred             ecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH-------HHHHHHhccCcCCceecCCCchh--hcCCCe--EEEec
Confidence            99999999999999888889999999999987542       22332210  0011111222111  112222  34456


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCChh---HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSDVT---GVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~Di~---g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      .+++..+.++++|+..|.+++..++..   ...+.+...|                 ..  .....+.|  .++++.|++
T Consensus       144 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~-----------------~~--~~~~~~~e--al~~~~Gl~  202 (266)
T 3d1l_A          144 SSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCN-----------------FT--NHMYALAA--ELLKKYNLP  202 (266)
T ss_dssp             SSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHH-----------------HH--HHHHHHHH--HHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHH-----------------HH--HHHHHHHH--HHHHHcCCC
Confidence            788889999999999998888776542   2223322222                 11  11123334  366788999


Q ss_pred             hhhhhhcc
Q 014700          361 PATITGLS  368 (420)
Q Consensus       361 ~~t~~~l~  368 (420)
                      ++.+..+.
T Consensus       203 ~~~~~~l~  210 (266)
T 3d1l_A          203 FDVMLPLI  210 (266)
T ss_dssp             GGGGHHHH
T ss_pred             HHHHHHHH
Confidence            88876643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.69  E-value=4.2e-16  Score=148.64  Aligned_cols=193  Identities=16%  Similarity=0.225  Sum_probs=133.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||.++|..|+++|. ++|++|+|++++++.+.+..             ++..++++++++ ++|+||+||
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~~~~-------------g~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKEL-------------GVETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHHT-------------CCEEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC-CeEEEECCCHHHHHHHHHhc-------------CCEEeCCHHHHh-cCCEEEEEe
Confidence            699999999999999999998863 69999999999888887641             134455666778 999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC--C
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK--D  285 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~--d  285 (420)
                      |+..++++++++.+  + +++||++++|+.++       .+.+.++.. ..+ +...|+.+.....+.  ..+..+.  +
T Consensus        66 ~~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~-------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~--~~i~~~~~~~  131 (263)
T 1yqg_A           66 KPQDMEAACKNIRT--N-GALVLSVAAGLSVG-------TLSRYLGGT-RRI-VRVMPNTPGKIGLGV--SGMYAEAEVS  131 (263)
T ss_dssp             CHHHHHHHHTTCCC--T-TCEEEECCTTCCHH-------HHHHHTTSC-CCE-EEEECCGGGGGTCEE--EEEECCTTSC
T ss_pred             CchhHHHHHHHhcc--C-CCEEEEecCCCCHH-------HHHHHcCCC-CcE-EEEcCCHHHHHcCce--EEEEcCCCCC
Confidence            99889999988876  5 88999999998852       344444431 122 222466555443332  2233344  7


Q ss_pred             HHHHHHHHHHHhcCCceEEEc-CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 014700          286 RKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v~~s-~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~  364 (420)
                      ++..+.++++|+..|+.++.. +|.        +..+.++. |.      + +.....+.+++.|+   +++.|++++++
T Consensus       132 ~~~~~~~~~l~~~~g~~~~~~~~~~--------~~~~~al~-g~------~-~~~~~~~~~~l~e~---~~~~G~~~~~~  192 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTVWLDDEEK--------MHGITGIS-GS------G-PAYVFYLLDALQNA---AIRQGFDMAEA  192 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEEECSSTTH--------HHHHHHHT-TS------H-HHHHHHHHHHHHHH---HHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCChhh--------ccHHHHHH-cc------H-HHHHHHHHHHHHHH---HHHcCCCHHHH
Confidence            888999999999999887555 431        12222221 11      1 12233444555555   88899999888


Q ss_pred             hhcc
Q 014700          365 TGLS  368 (420)
Q Consensus       365 ~~l~  368 (420)
                      .++.
T Consensus       193 ~~~~  196 (263)
T 1yqg_A          193 RALS  196 (263)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.68  E-value=2.2e-16  Score=152.98  Aligned_cols=221  Identities=16%  Similarity=0.178  Sum_probs=140.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+|||+|||+|.||.++|..|+++|.+++|++|+|+++..+.+.+.|..            ...+++++++++++|+||+
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~aDvVil   72 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV------------DEATADFKVFAALADVIIL   72 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC------------SEEESCTTTTGGGCSEEEE
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc------------ccccCCHHHhhcCCCEEEE
Confidence            3689999999999999999999984338999999999988887765421            0345577777889999999


Q ss_pred             ccChhhHHHHHHHhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE---EE-----ECcccHH-HHhhcC
Q 014700          206 AMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI---AL-----SGPSFAL-ELMNKL  275 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~-l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~---vl-----~GP~~a~-ev~~g~  275 (420)
                      |||.+.++++++++.++ ++++++|++++++ ....    .+.+.+.++.....+.   .+     .||..+. ++..+.
T Consensus        73 avp~~~~~~v~~~l~~~~l~~~~ivi~~~~~-~~~~----~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~  147 (290)
T 3b1f_A           73 AVPIKKTIDFIKILADLDLKEDVIITDAGST-KYEI----VRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENA  147 (290)
T ss_dssp             CSCHHHHHHHHHHHHTSCCCTTCEEECCCSC-HHHH----HHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTS
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEECCCC-chHH----HHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCC
Confidence            99999999999999998 8889988877643 2211    1334444432001110   11     1444332 233444


Q ss_pred             CeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHH---HHHHHHHHHHHHH-HHHhcccchhHHHHHHHHHHHHH
Q 014700          276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEI---AGALKNVLAIAAG-IVVGMNLGNNSMAALVAQGCSEI  350 (420)
Q Consensus       276 ~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~---~~alkNv~Ai~~G-~~~gl~lg~N~~~al~~~~~~E~  350 (420)
                      ++.+... +.+++..+.++++|+..|+.++..++......   .+.+.++++.... ....+.+..+....+...+++++
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~~~~~~  227 (290)
T 3b1f_A          148 YYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAGGFRDM  227 (290)
T ss_dssp             EEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCHHHHHT
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccccHHhh
Confidence            3434333 35677889999999999999877665433322   2334444432211 11111222234456667777777


Q ss_pred             HHHHHHcCCChhhhhh
Q 014700          351 RWLATKMGAKPATITG  366 (420)
Q Consensus       351 ~~lA~a~Gi~~~t~~~  366 (420)
                      .+++   +.+|..+.+
T Consensus       228 ~rla---~~~p~~~~~  240 (290)
T 3b1f_A          228 TRIA---ESEPGMWTS  240 (290)
T ss_dssp             TGGG---GSCHHHHHH
T ss_pred             hhhh---cCCHHHHHH
Confidence            7666   556655444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.66  E-value=3e-15  Score=142.60  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~--~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|||+|||+|+||++||..|+++|.  .++|++|+|++++      .              ++...++++++++++|+||
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~--------------g~~~~~~~~~~~~~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T--------------TLNYMSSNEELARHCDIIV   63 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S--------------SSEECSCHHHHHHHCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C--------------ceEEeCCHHHHHhcCCEEE
Confidence            5799999999999999999999871  1589999998753      1              2355667888888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-  283 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-  283 (420)
                      +|||.+.++++++++.+.+ ++++||+.++|+.++       .+.+.++.. .. .+...|+++.....+ .+.++.+. 
T Consensus        64 ~~v~~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~-------~l~~~~~~~-~~-~v~~~p~~p~~~~~g-~~~~~~~~~  132 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYL-SSKLLISICGGLNIG-------KLEEMVGSE-NK-IVWVMPNTPCLVGEG-SFIYCSNKN  132 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGC-TTCEEEECCSSCCHH-------HHHHHHCTT-SE-EEEEECCGGGGGTCE-EEEEEECTT
T ss_pred             EEeCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHH-------HHHHHhCCC-Cc-EEEECCChHHHHcCC-eEEEEeCCC
Confidence            9999999999999999888 678899999999864       234444431 11 234556666554444 33222222 


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          284 KDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                      .+++..+.++++|+..|..++..++
T Consensus       133 ~~~~~~~~~~~ll~~~G~~~~~~~~  157 (262)
T 2rcy_A          133 VNSTDKKYVNDIFNSCGIIHEIKEK  157 (262)
T ss_dssp             CCHHHHHHHHHHHHTSEEEEECCGG
T ss_pred             CCHHHHHHHHHHHHhCCCEEEeCHH
Confidence            3688899999999999974333333

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.66  E-value=2.4e-15  Score=145.72  Aligned_cols=197  Identities=12%  Similarity=0.121  Sum_probs=132.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||+|||+ |.||.++|..|.++|  ++|++|+|+++..+.+.+.|.              .. .++.++++++|+||+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g~--------------~~-~~~~~~~~~aDvVi~   73 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSA--HHLAAIEIAPEGRDRLQGMGI--------------PL-TDGDGWIDEADVVVL   73 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSS--SEEEEECCSHHHHHHHHHTTC--------------CC-CCSSGGGGTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHhcCC--------------Cc-CCHHHHhcCCCEEEE
Confidence            479999999 999999999999998  899999999998888876431              11 145567889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE-ECcccHHH--------HhhcCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALE--------LMNKLP  276 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl-~GP~~a~e--------v~~g~~  276 (420)
                      |||.+.++++++++.+.++++++||++++|...+.       +.+..+    ...++ ..|.++.+        ...+.+
T Consensus        74 av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~-------l~~~~~----~~~~v~~~P~~~~~~~~~~~~~~~~g~l  142 (286)
T 3c24_A           74 ALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG-------VMPERA----DITYFIGHPCHPPLFNDETDPAARTDYH  142 (286)
T ss_dssp             CSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT-------CSCCCT----TSEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred             cCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH-------HHhhhC----CCeEEecCCCCccccccccchhhccCcc
Confidence            99999999999999999999999999888763221       112111    12233 55555322        455532


Q ss_pred             ------eEE-EEecCCHHHHHHHHHHHhcCCc---eEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 014700          277 ------TAM-VVASKDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG  346 (420)
Q Consensus       277 ------t~i-~ia~~d~e~~~~l~~ll~~~g~---~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~  346 (420)
                            ..+ +..+.+++..+.++++|+..|.   +++..+......+.+++.|.                 ........
T Consensus       143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~-----------------~~~~~~~~  205 (286)
T 3c24_A          143 GGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEM-----------------VAMPFVET  205 (286)
T ss_dssp             SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHT-----------------THHHHHHH
T ss_pred             cccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHH-----------------HHHHHHHH
Confidence                  222 2235677889999999999998   67666533222221222211                 11111223


Q ss_pred             HHH-HHHHHHHcCCChhhhhhcc
Q 014700          347 CSE-IRWLATKMGAKPATITGLS  368 (420)
Q Consensus       347 ~~E-~~~lA~a~Gi~~~t~~~l~  368 (420)
                      +.| +...+.++|++++.+.++.
T Consensus       206 ~~eal~~~~~~~Gl~~~~~~~~~  228 (286)
T 3c24_A          206 MVHAVDECADRYGIDRQAALDFM  228 (286)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHH
Confidence            344 4445566799988877754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.64  E-value=4.2e-14  Score=134.61  Aligned_cols=151  Identities=14%  Similarity=0.219  Sum_probs=109.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ++|||+|||+|.||.+++..|.+.|  ++|.+|+|++++.+.+.+. +              +..+++++++++++|+||
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~Vi   65 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQLA--------------LPYAMSHQDLIDQVDLVI   65 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHHT--------------CCBCSSHHHHHHTCSEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHHcC--------------CEeeCCHHHHHhcCCEEE
Confidence            4689999999999999999999988  8999999999988888754 3              223457888888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      +|+|.+.++++++++.    ++++||++++|+..+.       +.+.++.. ..+ +...|+++.....+  ...+..+.
T Consensus        66 ~~v~~~~~~~v~~~l~----~~~~vv~~~~~~~~~~-------l~~~~~~~-~~~-v~~~p~~~~~~~~g--~~~i~~~~  130 (259)
T 2ahr_A           66 LGIKPQLFETVLKPLH----FKQPIISMAAGISLQR-------LATFVGQD-LPL-LRIMPNMNAQILQS--STALTGNA  130 (259)
T ss_dssp             ECSCGGGHHHHHTTSC----CCSCEEECCTTCCHHH-------HHHHHCTT-SCE-EEEECCGGGGGTCE--EEEEEECT
T ss_pred             EEeCcHhHHHHHHHhc----cCCEEEEeCCCCCHHH-------HHHhcCCC-CCE-EEEcCCchHHHcCc--eEEEEcCC
Confidence            9999888888887653    6789999988887542       33333321 122 22446655544444  22233343


Q ss_pred             --CHHHHHHHHHHHhcCCceEEEcCC
Q 014700          285 --DRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       285 --d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                        +++..+.++++|+..| .++..++
T Consensus       131 ~~~~~~~~~~~~ll~~~G-~~~~~~~  155 (259)
T 2ahr_A          131 LVSQELQARVRDLTDSFG-STFDISE  155 (259)
T ss_dssp             TCCHHHHHHHHHHHHTTE-EEEECCG
T ss_pred             CCCHHHHHHHHHHHHhCC-CEEEecH
Confidence              7888999999999998 4554443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.63  E-value=6.5e-15  Score=145.21  Aligned_cols=171  Identities=13%  Similarity=0.143  Sum_probs=120.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH-hccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e-al~~aDiV  203 (420)
                      +|||+|||+|.||.++|..|.++|  +  +|++|+|+++.++.+.+.|..            ...++++++ ++++||+|
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G--~~~~V~~~dr~~~~~~~a~~~G~~------------~~~~~~~~~~~~~~aDvV   98 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV   98 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCTTGGGGGCCSEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHCCCc------------chhcCCHHHHhhccCCEE
Confidence            589999999999999999999998  7  999999999988887775531            134567778 88999999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE-----CcccHH-HHhhcCCe
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS-----GPSFAL-ELMNKLPT  277 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~-----GP~~a~-ev~~g~~t  277 (420)
                      |+|||...+.++++++.++++++++|++++. +.....+.+.+.+.+.    ..+...+.     ||..+. +++.+..+
T Consensus        99 ilavp~~~~~~vl~~l~~~l~~~~iv~d~~S-vk~~~~~~~~~~l~~~----~v~~hPm~G~e~sG~~~A~~~Lf~g~~~  173 (314)
T 3ggo_A           99 MLSSPVRTFREIAKKLSYILSEDATVTDQGS-VKGKLVYDLENILGKR----FVGGHPIAGTEKSGVEYSLDNLYEGKKV  173 (314)
T ss_dssp             EECSCGGGHHHHHHHHHHHSCTTCEEEECCS-CCTHHHHHHHHHHGGG----EECEEECCCCCCCSGGGCCTTTTTTCEE
T ss_pred             EEeCCHHHHHHHHHHHhhccCCCcEEEECCC-CcHHHHHHHHHhcCCC----EEecCcccCCcccchhhhhhhhhcCCEE
Confidence            9999999999999999999999999988753 3322222233333211    11112233     343333 23344443


Q ss_pred             EEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhHHHHHH
Q 014700          278 AMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAG  316 (420)
Q Consensus       278 ~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~  316 (420)
                      .++.. +.+++.+++++++|+..|.+++..+.-..+...+
T Consensus       174 il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a  213 (314)
T 3ggo_A          174 ILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFG  213 (314)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHH
Confidence            33222 3578899999999999999887766544444433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.60  E-value=2.8e-14  Score=138.31  Aligned_cols=200  Identities=16%  Similarity=0.148  Sum_probs=132.8

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------------cCCCCCCCCCCCCCceEEeC
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------------HCNCRYFPEQKLPENVIATT  191 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------------g~~~~~l~~~~l~~~i~a~t  191 (420)
                      +.++||+|||+|.||+.+|..|+++|  ++|++|||+++.++.+.+.             +.....  ......++..++
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~~   77 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGA--AQKALGGIRYSD   77 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTH--HHHHHHHCEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHH--HHHHHcCeEEeC
Confidence            45689999999999999999999998  9999999999887766543             110000  000112456788


Q ss_pred             CHHHhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE-E-EECccc
Q 014700          192 DAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI-A-LSGPSF  267 (420)
Q Consensus       192 d~~eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~-v-l~GP~~  267 (420)
                      ++++++++||+||+|||..  ....+++++.+++++++++++.+.++...   .    +.+.++.+ ..+. . ...|..
T Consensus        78 ~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~---~----la~~~~~~-~~~ig~h~~~p~~  149 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPS---D----LVGYTGRG-DKFLALHFANHVW  149 (283)
T ss_dssp             CHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---H----HHHHHSCG-GGEEEEEECSSTT
T ss_pred             CHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---H----HHhhcCCC-cceEEEccCCCcc
Confidence            9988899999999999986  78888999999999999999888777542   1    22333321 1111 1 112321


Q ss_pred             HHHHhhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEc-CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 014700          268 ALELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ  345 (420)
Q Consensus       268 a~ev~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~  345 (420)
                           ......++.+ ..+++..+.+.++++..|...+.. .|..|-     +.                ++    +...
T Consensus       150 -----~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~-----i~----------------nr----~~~~  199 (283)
T 4e12_A          150 -----VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY-----VL----------------NS----LLVP  199 (283)
T ss_dssp             -----TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT-----TH----------------HH----HHHH
T ss_pred             -----cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE-----Ee----------------hH----HHHH
Confidence                 1222222222 236889999999999999887765 454321     11                11    1123


Q ss_pred             HHHHHHHHHHHcCCChhhhhh
Q 014700          346 GCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       346 ~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                      .++|+..+++..+++++.+..
T Consensus       200 ~~~ea~~l~~~g~~~~~~id~  220 (283)
T 4e12_A          200 LLDAAAELLVDGIADPETIDK  220 (283)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            567888888777778777655

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.60  E-value=4.5e-14  Score=130.22  Aligned_cols=179  Identities=14%  Similarity=0.175  Sum_probs=126.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+||| +|.||.+++..|+++|  ++|++|+|++++.+.+.+. +.   +++    +..+. .++++++++++|+||+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~---~~~----~~~~~-~~~~~~~~~~~D~Vi~   70 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRR---IAG----DASIT-GMKNEDAAEACDIAVL   70 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHH---HHS----SCCEE-EEEHHHHHHHCSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---ccc----cCCCC-hhhHHHHHhcCCEEEE
Confidence            6999999 9999999999999998  8999999999888777653 21   111    01233 2467777889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchh-------hhHHHHHHHHhCCCCCCeEEEEC--cccHHHHhh--c
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-------RMMSQIIPQALRNPRQPFIALSG--PSFALELMN--K  274 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~-------~~~se~l~~~lg~~~~~~~vl~G--P~~a~ev~~--g  274 (420)
                      |+|...++++++++.+.++ +++++++++|+..++.       ....+.+.+.++.  ..  ++.+  |..+.....  .
T Consensus        71 ~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~--~~--~v~~~~~~~~~~~~~~~~  145 (212)
T 1jay_A           71 TIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES--EK--VVSALHTIPAARFANLDE  145 (212)
T ss_dssp             CSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC--SC--EEECCTTCCHHHHHCTTC
T ss_pred             eCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC--Ce--EEEEccchHHHHhhCcCC
Confidence            9999999999999887774 8999999999874310       1123445555543  12  3344  444443322  2


Q ss_pred             CC-eEEEEecCCHHHHHHHHHHHhcC-CceEEEcCChhHHHHHHHHHHH
Q 014700          275 LP-TAMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNV  321 (420)
Q Consensus       275 ~~-t~i~ia~~d~e~~~~l~~ll~~~-g~~v~~s~Di~g~e~~~alkNv  321 (420)
                      .. ..+++++.+++..+.++++|+.. |..+...+++....|.|.+.|.
T Consensus       146 ~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~  194 (212)
T 1jay_A          146 KFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL  194 (212)
T ss_dssp             CCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred             CCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHH
Confidence            22 22334455688899999999999 9988777787666666655543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.60  E-value=7e-14  Score=136.47  Aligned_cols=195  Identities=16%  Similarity=0.213  Sum_probs=129.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-----------hcCCCCCCCC--------CCCCCce
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPE--------QKLPENV  187 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-----------~g~~~~~l~~--------~~l~~~i  187 (420)
                      ++||+|||+|.||++||..|+++|  ++|++|||+++.++...+           .|.    +..        .....++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~----~~~~~~~~~~~~~~~~~i   88 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKF----AENPKAGDEFVEKTLSTI   88 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCC----CCccccchhhHHHHHhce
Confidence            578999999999999999999998  999999999987765432           111    000        0011246


Q ss_pred             EEeCCHHHhccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEE
Q 014700          188 IATTDAKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALS  263 (420)
Q Consensus       188 ~a~td~~eal~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~  263 (420)
                      .+++|+++++++||+||+|||...  .+++++++.++++++++|++.++|+...       .+.+.++.+ ..+.  -..
T Consensus        89 ~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~-------~l~~~~~~~-~~~~g~h~~  160 (302)
T 1f0y_A           89 ATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT-------SIANATTRQ-DRFAGLHFF  160 (302)
T ss_dssp             EEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH-------HHHTTSSCG-GGEEEEEEC
T ss_pred             EEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH-------HHHHhcCCc-ccEEEEecC
Confidence            778899888999999999999754  6788899998898899999888888753       233333221 0111  111


Q ss_pred             CcccHHHHhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 014700          264 GPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (420)
Q Consensus       264 GP~~a~ev~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~a  341 (420)
                      .|..      ..+...++.+  .+++..+.+.++++..|..++...|..+    .                 +.++.   
T Consensus       161 ~P~~------~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g----~-----------------i~nr~---  210 (302)
T 1f0y_A          161 NPVP------VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG----F-----------------IVNRL---  210 (302)
T ss_dssp             SSTT------TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT----T-----------------THHHH---
T ss_pred             CCcc------cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc----c-----------------cHHHH---
Confidence            2321      1122223333  3789999999999999987776655432    1                 11111   


Q ss_pred             HHHHHHHHHHHHHHHcCCChhhhhh
Q 014700          342 LVAQGCSEIRWLATKMGAKPATITG  366 (420)
Q Consensus       342 l~~~~~~E~~~lA~a~Gi~~~t~~~  366 (420)
                       +...++|+.++++..|++++.+..
T Consensus       211 -l~~~~~Ea~~l~~~g~~~~~~id~  234 (302)
T 1f0y_A          211 -LVPYLMEAIRLYERGDASKEDIDT  234 (302)
T ss_dssp             -HHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCCCHHHHHH
Confidence             123467788888777777666543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.58  E-value=4.4e-14  Score=137.95  Aligned_cols=204  Identities=12%  Similarity=0.134  Sum_probs=130.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ++||+||| +|.||.++|..|+++|  ++|++|+|+++.                           ++++++++||+||+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~~~---------------------------~~~~~~~~aDvVil   71 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDWA---------------------------VAESILANADVVIV   71 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCGG---------------------------GHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCccc---------------------------CHHHHhcCCCEEEE
Confidence            56999999 9999999999999998  899999987641                           35567889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d  285 (420)
                      |||.+.+.++++++.++++++++|++++ |+....    .+.+.+.++....+...+.||..  +...+.++.++. +.+
T Consensus        72 avp~~~~~~vl~~l~~~l~~~~iv~~~~-svk~~~----~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~-~~~  143 (298)
T 2pv7_A           72 SVPINLTLETIERLKPYLTENMLLADLT-SVKREP----LAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCD-GRF  143 (298)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTSEEEECC-SCCHHH----HHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEE-EEC
T ss_pred             eCCHHHHHHHHHHHHhhcCCCcEEEECC-CCCcHH----HHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEec-CCC
Confidence            9999999999999999998888877764 444321    22233333311111112344443  122344333322 336


Q ss_pred             HHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHH---HHHHHHHH-HHhcccchhHHHHHHHHHHHHHHH-HHHHcCCC
Q 014700          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN---VLAIAAGI-VVGMNLGNNSMAALVAQGCSEIRW-LATKMGAK  360 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkN---v~Ai~~G~-~~gl~lg~N~~~al~~~~~~E~~~-lA~a~Gi~  360 (420)
                      .+..+.++++|+..|.+++..++...+.+.+..-+   +++...+. .....+.......+...+++.... +++..+.+
T Consensus       144 ~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria~~~  223 (298)
T 2pv7_A          144 PERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQD  223 (298)
T ss_dssp             GGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHhcCC
Confidence            77789999999999999887776555666544444   33333221 112222233444566677777333 33333677


Q ss_pred             hhhhhhc
Q 014700          361 PATITGL  367 (420)
Q Consensus       361 ~~t~~~l  367 (420)
                      |+...+.
T Consensus       224 p~~~~di  230 (298)
T 2pv7_A          224 AELYADI  230 (298)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665553

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.57  E-value=3.9e-14  Score=131.94  Aligned_cols=165  Identities=16%  Similarity=0.169  Sum_probs=116.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+|||+|||+|.||.+++..|+++|  ++|++|+|+++..+.+.+.+              +... +.+++++++|+||+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g--------------~~~~-~~~~~~~~~DvVi~   89 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSG--FKVVVGSRNPKRTARLFPSA--------------AQVT-FQEEAVSSPEVIFV   89 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHSBTT--------------SEEE-EHHHHTTSCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------Ccee-cHHHHHhCCCEEEE
Confidence            3689999999999999999999998  89999999998777665432              2333 67788899999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchh---hhHHHHHHHHhCCCCCCeEEEECcccHHHHhhc---CCeEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL---RMMSQIIPQALRNPRQPFIALSGPSFALELMNK---LPTAM  279 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~---~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g---~~t~i  279 (420)
                      |+|.+.++++++ +.+.+ ++++||++++|+..++.   ....+.+.+.++..  .+.....+..+.....+   ..+.+
T Consensus        90 av~~~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~--~vv~~~n~~~~~~~~~~~~~g~~~~  165 (215)
T 2vns_A           90 AVFREHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTC--TVVKAFNVISAWTLQAGPRDGNRQV  165 (215)
T ss_dssp             CSCGGGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTS--EEEEECTTBCHHHHHTCSCSSCCEE
T ss_pred             CCChHHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCC--eEEeccccccHhHhcccccCCceeE
Confidence            999887777765 66666 78999999999875432   13345666666531  11111112122111111   12345


Q ss_pred             EEecCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       280 ~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                      ++++.+++..+.++++|+..|++++..+++..
T Consensus       166 ~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~~~  197 (215)
T 2vns_A          166 PICGDQPEAKRAVSEMALAMGFMPVDMGSLAS  197 (215)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCEEEECCSGGG
T ss_pred             EEecCCHHHHHHHHHHHHHcCCceEeecchhh
Confidence            66777889999999999999999999888643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.56  E-value=1e-14  Score=145.42  Aligned_cols=180  Identities=15%  Similarity=0.164  Sum_probs=119.3

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc----CC
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL----GA  200 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~----~a  200 (420)
                      +..+||+|||+|.||.+||..|.++|  ++|++|+|+++.++.+.+.|.              ..+++++++++    ++
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~~~~a~~~G~--------------~~~~~~~e~~~~a~~~a   69 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAAN--HSVFGYNRSRSGAKSAVDEGF--------------DVSADLEATLQRAAAED   69 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHTTC--------------CEESCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eeeCCHHHHHHhcccCC
Confidence            34689999999999999999999998  999999999998888776542              33457777655    47


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC-CCCCCeEEEECc-----ccHH-HHhh
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR-NPRQPFIALSGP-----SFAL-ELMN  273 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg-~~~~~~~vl~GP-----~~a~-ev~~  273 (420)
                      |+||+|||...+.++++++.++ +++++|++++ ++...    +.+.+.+.+. ....+...+.|+     ..+. +++.
T Consensus        70 DlVilavP~~~~~~vl~~l~~~-~~~~iv~Dv~-Svk~~----i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~  143 (341)
T 3ktd_A           70 ALIVLAVPMTAIDSLLDAVHTH-APNNGFTDVV-SVKTA----VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFK  143 (341)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHH-CTTCCEEECC-SCSHH----HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTT
T ss_pred             CEEEEeCCHHHHHHHHHHHHcc-CCCCEEEEcC-CCChH----HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhc
Confidence            9999999999999999999886 7888887765 33322    1223333221 101111223333     2222 2444


Q ss_pred             cCCeEEEEec-CCHH--------HHHHHHHHHhcCCceEEEcCChhHHHHH---HHHHHHHHHHH
Q 014700          274 KLPTAMVVAS-KDRK--------LANAVQQLLASKHLRISTSSDVTGVEIA---GALKNVLAIAA  326 (420)
Q Consensus       274 g~~t~i~ia~-~d~e--------~~~~l~~ll~~~g~~v~~s~Di~g~e~~---~alkNv~Ai~~  326 (420)
                      +.++.++... .+++        .++++.++|+..|.+++..+.-..+...   +.+.++++.+.
T Consensus       144 g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL  208 (341)
T 3ktd_A          144 RAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETL  208 (341)
T ss_dssp             TCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHH
Confidence            5544333222 2445        7899999999999888776654444443   33455554443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.56  E-value=8.4e-14  Score=135.98  Aligned_cols=187  Identities=19%  Similarity=0.262  Sum_probs=124.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+.+||+|||+|.||..||..|+ +|  ++|++|||+++.+++..+. +     .+ ....+++.++++++ +++||+||
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~~~~~~~~~~-l-----~~-~~~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSEKALEAAREQ-I-----PE-ELLSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHH-S-----CG-GGGGGEEEESSCTT-GGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCHHHHHHHHHH-H-----HH-HHhCCeEEeCCHHH-HcCCCEEE
Confidence            45789999999999999999999 98  9999999999988887765 1     00 01124677788876 78999999


Q ss_pred             EccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHHhhcCCeEEE
Q 014700          205 HAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       205 laVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      .|+|...  .+.++.++.+.  +++++++.+.++.+.       .+.+.+..+.  ....++. |..      ..+...+
T Consensus        79 eavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~-------~~a~~~~~~~r~~G~Hf~~-Pv~------~~~lvei  142 (293)
T 1zej_A           79 EAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVD-------DIAERLDSPSRFLGVHWMN-PPH------VMPLVEI  142 (293)
T ss_dssp             ECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHH-------HHHTTSSCGGGEEEEEECS-STT------TCCEEEE
T ss_pred             EcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHH-------HHHHHhhcccceEeEEecC-ccc------cCCEEEE
Confidence            9999654  45555777665  788887655566653       1223222110  1112222 432      2233334


Q ss_pred             Eec--CCHHHHHHHHHHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcC
Q 014700          281 VAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG  358 (420)
Q Consensus       281 ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~G  358 (420)
                      +.+  .+++.++++.++++..|..+++..|.      .+..++                     +...++|+..+++. |
T Consensus       143 v~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nrl---------------------l~~~~~EA~~l~~~-G  194 (293)
T 1zej_A          143 VISRFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNRF---------------------NAAVLSEASRMIEE-G  194 (293)
T ss_dssp             EECTTCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHHH---------------------HHHHHHHHHHHHHH-T
T ss_pred             ECCCCCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHHH---------------------HHHHHHHHHHHHHh-C
Confidence            444  48899999999999999888777664      222222                     11357777777777 7


Q ss_pred             CChhhhhh
Q 014700          359 AKPATITG  366 (420)
Q Consensus       359 i~~~t~~~  366 (420)
                      ++++.+..
T Consensus       195 v~~e~id~  202 (293)
T 1zej_A          195 VRAEDVDR  202 (293)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            77766655

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.55  E-value=2.9e-13  Score=139.60  Aligned_cols=164  Identities=17%  Similarity=0.290  Sum_probs=113.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--------HHHHhcCCCCCCCC---CCCCCceEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--------SINEKHCNCRYFPE---QKLPENVIATTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--------~i~~~g~~~~~l~~---~~l~~~i~a~td~~  194 (420)
                      .++||+|||+|.||+.||..|+++|  ++|++||+++++..        .+.+.|.    +..   ..+..++..++|++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~a~~~i~~~l~~~~~~G~----l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQRCKQELEVMYAREKSFKR----LNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHTTS----CCHHHHHHHHTTEEEESCGG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHhcceEEeCCHH
Confidence            4689999999999999999999999  99999999988432        2222221    100   01234677888885


Q ss_pred             HhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCe---EEEECcccHH
Q 014700          195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF---IALSGPSFAL  269 (420)
Q Consensus       195 eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~---~vl~GP~~a~  269 (420)
                       ++++||+||.|||..  ..+.+++++.++++++++|++.+.++...       .+.+.+..+ ..+   .++. |..  
T Consensus       127 -al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~-------~ia~~~~~p-~r~iG~Hffn-Pv~--  194 (460)
T 3k6j_A          127 -KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN-------EISSVLRDP-SNLVGIHFFN-PAN--  194 (460)
T ss_dssp             -GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHHTTSSSG-GGEEEEECCS-STT--
T ss_pred             -HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH-------HHHHhccCC-cceEEEEecc-hhh--
Confidence             689999999999964  46778899999999999998887776643       233333321 111   1222 322  


Q ss_pred             HHhhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          270 ELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       270 ev~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                          ..+..-++.+  .+++.++++.++++..|..++...|..|
T Consensus       195 ----~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG  234 (460)
T 3k6j_A          195 ----VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS  234 (460)
T ss_dssp             ----TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCH
T ss_pred             ----hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccH
Confidence                1222223333  3789999999999999999888888544

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.49  E-value=2.3e-13  Score=141.62  Aligned_cols=169  Identities=16%  Similarity=0.244  Sum_probs=114.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC-CCCCCCC--------CCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC-RYFPEQK--------LPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~-~~l~~~~--------l~~~i~a~td~~e  195 (420)
                      .++||+|||+|.||..||..|+++|  ++|++||++++.++.+.+.-. .. +......        ...++..+++++ 
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHG--HQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-   80 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-
Confidence            3579999999999999999999999  999999999998877654200 00 0000000        123567788885 


Q ss_pred             hccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev  271 (420)
                      ++++||+||+|||..  ..+++++++.+.++++++|++.+.++...       .+.+.+..+.  ....++. |..   +
T Consensus        81 ~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~-------~ia~~~~~p~~~ig~hf~~-Pa~---v  149 (483)
T 3mog_A           81 ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT-------AIAAEIKNPERVAGLHFFN-PAP---V  149 (483)
T ss_dssp             GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHTTTSSSGGGEEEEEECS-STT---T
T ss_pred             HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH-------HHHHHccCccceEEeeecC-hhh---h
Confidence            589999999999976  45788899999999999988877777653       2333333210  1111222 211   1


Q ss_pred             hhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                         .+...++.+  .+++.++.+.++++..|..++...|..|
T Consensus       150 ---~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G  188 (483)
T 3mog_A          150 ---MKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG  188 (483)
T ss_dssp             ---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             ---CCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence               122223333  2788999999999999988877777643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.18  E-value=6.7e-15  Score=136.09  Aligned_cols=165  Identities=14%  Similarity=0.166  Sum_probs=108.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..|||+|||+|+||.++|..|.++|  ++|++|+|+++ .+.+...+              +... +++++++++|+||+
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~-~~~~~~~g--------------~~~~-~~~~~~~~aDvVil   79 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQCG--YSVVFGSRNPQ-VSSLLPRG--------------AEVL-CYSEAASRSDVIVL   79 (201)
Confidence            3679999999999999999999988  89999999876 44333221              2333 56677889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchh-hhHHHHHHHHhCCCCCCeEEEECcccHHHHhh-c----CCeEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-RMMSQIIPQALRNPRQPFIALSGPSFALELMN-K----LPTAM  279 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~-~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~-g----~~t~i  279 (420)
                      |||.+.+++++ ++.+. .++++||++++|+..... ..-.+.+.+.++..   -.+..-|+....... +    ..+ .
T Consensus        80 av~~~~~~~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~---~vvra~~n~~a~~~~~g~l~g~~~-~  153 (201)
T 2yjz_A           80 AVHREHYDFLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA---HVVKAFNTISAWALQSGTLDASRQ-V  153 (201)
Confidence            99998888877 55543 468899999999853100 00012344433321   111222332222211 1    111 2


Q ss_pred             EEecCCHHHHHHHHHHHhcCCceEEEcCChhHHHH
Q 014700          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEI  314 (420)
Q Consensus       280 ~ia~~d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~  314 (420)
                      ++++.+.+..++++++|+..|++++..+++....|
T Consensus       154 ~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~  188 (201)
T 2yjz_A          154 FVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKE  188 (201)
Confidence            34456778889999999999999887777644334

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.44  E-value=1.7e-12  Score=141.22  Aligned_cols=168  Identities=13%  Similarity=0.173  Sum_probs=114.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-------cCCCCCCCC---CCCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-------g~~~~~l~~---~~l~~~i~a~td~~e  195 (420)
                      .++||+|||+|.||+.||..|+++|  ++|++||++++.++...+.       ......++.   .....+++.++|+ +
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~  387 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-E  387 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-G
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-H
Confidence            3679999999999999999999999  9999999999877664321       000001111   1134567888888 5


Q ss_pred             hccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~ev  271 (420)
                      ++++||+||+|||...  .+.+++++.++++++++|++.+.++...       .+.+.+..+.  ....++ .|..    
T Consensus       388 ~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~-------~la~~~~~p~~~iG~hf~-~P~~----  455 (725)
T 2wtb_A          388 SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN-------KIGERTKSQDRIVGAHFF-SPAH----  455 (725)
T ss_dssp             GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHTTTCSCTTTEEEEEEC-SSTT----
T ss_pred             HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH-------HHHHHhcCCCCEEEecCC-CCcc----
Confidence            6899999999999754  6778889999999999988877777653       1333332211  111122 2322    


Q ss_pred             hhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700          272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVT  310 (420)
Q Consensus       272 ~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~  310 (420)
                        ..+...++.+  .+++.++.+.++++..|..+++..|..
T Consensus       456 --~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  494 (725)
T 2wtb_A          456 --IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCT  494 (725)
T ss_dssp             --TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             --cCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCc
Confidence              1222333443  378999999999999998887777753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.40  E-value=2.4e-11  Score=120.74  Aligned_cols=175  Identities=18%  Similarity=0.260  Sum_probs=116.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .|||+|||+|.||.++|..|.++|  ++|++|+|+++. .+...+.|              +.++ +++++++++|+||+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G--~~V~~~~~~~~~~~~~a~~~G--------------~~~~-~~~e~~~~aDvVil   78 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHG--------------LKVA-DVKTAVAAADVVMI   78 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTT--------------CEEE-CHHHHHHTCSEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCc--CEEEEEECChHHHHHHHHHCC--------------CEEc-cHHHHHhcCCEEEE
Confidence            579999999999999999999998  899999998755 44444433              2334 77888899999999


Q ss_pred             ccChhhHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeE--EEECcccHH-HHhh---cCCeE
Q 014700          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFAL-ELMN---KLPTA  278 (420)
Q Consensus       206 aVp~~~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~--vl~GP~~a~-ev~~---g~~t~  278 (420)
                      |||.....++++ ++.++++++++|+++ .|+..        .+.+........+.  .-.||.++. ++..   +.+..
T Consensus        79 avp~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~--------~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~i  149 (338)
T 1np3_A           79 LTPDEFQGRLYKEEIEPNLKKGATLAFA-HGFSI--------HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDL  149 (338)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEES-CCHHH--------HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEE
T ss_pred             eCCcHHHHHHHHHHHHhhCCCCCEEEEc-CCchh--------HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEE
Confidence            999999999998 999999999988876 46431        11222111101111  114666653 4444   66655


Q ss_pred             EEEe-cCCHHHHHHHHHHHhcCCc-e--EEEcC----C---hhHHH--HHHHHHHHHHHHHH
Q 014700          279 MVVA-SKDRKLANAVQQLLASKHL-R--ISTSS----D---VTGVE--IAGALKNVLAIAAG  327 (420)
Q Consensus       279 i~ia-~~d~e~~~~l~~ll~~~g~-~--v~~s~----D---i~g~e--~~~alkNv~Ai~~G  327 (420)
                      +... ..+.+..+.+.++++..|. +  +...+    |   ..+..  +++.+.|+++.+..
T Consensus       150 i~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e  211 (338)
T 1np3_A          150 IAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFE  211 (338)
T ss_dssp             EEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHH
Confidence            4443 3355677889999999887 4  55432    1   12211  34447777666553

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.39  E-value=1.1e-11  Score=134.64  Aligned_cols=168  Identities=14%  Similarity=0.170  Sum_probs=111.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh---c----CCCCCCCC---CCCCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---H----CNCRYFPE---QKLPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~---g----~~~~~l~~---~~l~~~i~a~td~~e  195 (420)
                      .++||+|||+|.||+.||..|+++|  ++|++||++++.++...+.   .    .....+..   .....+++.++|+ +
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~  389 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-G  389 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-T
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-H
Confidence            3679999999999999999999999  9999999999877653210   0    00000000   0011246777888 6


Q ss_pred             hccCCcEEEEccChhh--HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHH
Q 014700          196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~~~--l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev  271 (420)
                      ++++||+||+|||...  .+.+++++.++++++++|++.+.++...       .+.+.+..+ ..+.-  +..|..    
T Consensus       390 ~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~-------~la~~~~~~-~~~ig~hf~~P~~----  457 (715)
T 1wdk_A          390 DFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS-------LLAKALKRP-ENFVGMHFFNPVH----  457 (715)
T ss_dssp             TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHGGGCSCG-GGEEEEECCSSTT----
T ss_pred             HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH-------HHHHHhcCc-cceEEEEccCCcc----
Confidence            6899999999999653  6778889999999999998887777653       233333221 11111  112322    


Q ss_pred             hhcCCeEEEEec--CCHHHHHHHHHHHhcCCceEEEcCChh
Q 014700          272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVT  310 (420)
Q Consensus       272 ~~g~~t~i~ia~--~d~e~~~~l~~ll~~~g~~v~~s~Di~  310 (420)
                        ..+...++.+  .+++.++.+.++++..|..+++..|..
T Consensus       458 --~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~  496 (715)
T 1wdk_A          458 --MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP  496 (715)
T ss_dssp             --TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             --cCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCC
Confidence              1222223333  378999999999999998887777753

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.39  E-value=4.4e-13  Score=129.27  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||+|||+|.||.+++..|+++   ++| .+|+|+++..+.+.+..             +. .+++++++++++|+||+
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~-------------g~-~~~~~~~~~~~~DvVil   64 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVY-------------GG-KAATLEKHPELNGVVFV   64 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHT-------------CC-CCCSSCCCCC---CEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHc-------------CC-ccCCHHHHHhcCCEEEE
Confidence            57999999999999999999875   588 59999999888876531             01 23456666788999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d  285 (420)
                      |||.+.+.++++++.   .++++||+++.++..+.       +.+......++...+.|+....+...+.+  +.+.+ +
T Consensus        65 av~~~~~~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~--~~~~~-~  131 (276)
T 2i76_A           65 IVPDRYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGRASIHPNFSFSSLEKALEMKDQIV--FGLEG-D  131 (276)
T ss_dssp             CSCTTTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSEEEEEECSCC--CTTGGGCGGGCC--EEECC-C
T ss_pred             eCChHHHHHHHHHhc---cCCCEEEECCCCCcHHH-------HHHhhccccchhhhcCCCchhHHHhCCCe--EEEEe-C
Confidence            999999999988875   57889999886655432       11111100011122344322222223333  22333 4


Q ss_pred             HHHHHHHHHHHhcCCceEEEcC
Q 014700          286 RKLANAVQQLLASKHLRISTSS  307 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v~~s~  307 (420)
                      ++..+.++++|+..|.+++..+
T Consensus       132 ~~~~~~~~~l~~~lG~~~~~v~  153 (276)
T 2i76_A          132 ERGLPIVKKIAEEISGKYFVIP  153 (276)
T ss_dssp             TTTHHHHHHHHHHHCSCEEECC
T ss_pred             hHHHHHHHHHHHHhCCCEEEEC
Confidence            4557889999998887666554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.39  E-value=9.4e-12  Score=128.85  Aligned_cols=166  Identities=15%  Similarity=0.165  Sum_probs=111.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-----------cCCCCCCCCCCCCCceEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-----------g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      .++||+|||+|.||+.||..|+++|  ++|++||++++.++...+.           |..   -+...-....++++++ 
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~---~~~~~~~~~~~i~~~~-  109 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQ---NGQASAKPKLRFSSST-  109 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCEEEESCG-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHhhhcCCH-
Confidence            4679999999999999999999998  9999999999877665431           100   0000001123456777 


Q ss_pred             HhccCCcEEEEccChh--hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCeEEEECcccHHH
Q 014700          195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALE  270 (420)
Q Consensus       195 eal~~aDiVIlaVp~~--~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~--~~~~vl~GP~~a~e  270 (420)
                      +++++||+||+|||..  ..+++++++.++++++++|++.+.++...       .+.+.+..+.  ....++ .|..   
T Consensus       110 ~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~-------~la~~~~~~~~~ig~hf~-~P~~---  178 (463)
T 1zcj_A          110 KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD-------DIASSTDRPQLVIGTHFF-SPAH---  178 (463)
T ss_dssp             GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHHTTSSCGGGEEEEEEC-SSTT---
T ss_pred             HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHH-------HHHHHhcCCcceEEeecC-CCcc---
Confidence            4688999999999975  35778889999999999998877666532       2333332210  011122 3432   


Q ss_pred             HhhcCCeEEEEe--cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          271 LMNKLPTAMVVA--SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       271 v~~g~~t~i~ia--~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                         ..+...++.  ..+++.++.+.++++..|..+++..|..|
T Consensus       179 ---~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~g  218 (463)
T 1zcj_A          179 ---VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG  218 (463)
T ss_dssp             ---TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTT
T ss_pred             ---cceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCcc
Confidence               122222333  35789999999999999988887777543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.28  E-value=5.2e-11  Score=122.41  Aligned_cols=161  Identities=14%  Similarity=0.130  Sum_probs=107.8

Q ss_pred             hhhcCCCeEEEEcccHHHHHHHHHHHhc------CCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          122 DILERTNKVVVLGGGSFGTAMAAHVANK------KSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       122 ~~~~~~mkI~IIGaGamG~alA~~La~a------G~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      +.+..++||+|||+|+||.++|..|.++      |  ++|++..|... ..+...+.|....       .   ....+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G--~~ViVg~r~~sks~e~A~e~G~~v~-------d---~ta~s~a  116 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKIGLRKGSKSFDEARAAGFTEE-------S---GTLGDIW  116 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCC--CEEEEEECTTCSCHHHHHHTTCCTT-------T---TCEEEHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCC--CEEEEEeCCchhhHHHHHHCCCEEe-------c---CCCCCHH
Confidence            4444448999999999999999999998      8  89987776543 2333444443210       0   0123678


Q ss_pred             HhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH---HhCCCCCCeEEEECcccHHHH
Q 014700          195 TALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ---ALRNPRQPFIALSGPSFALEL  271 (420)
Q Consensus       195 eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~---~lg~~~~~~~vl~GP~~a~ev  271 (420)
                      +++++||+||++||.....+++++|.++++++++ |++.-|+...       .+.+   .++.. . -.+...|+.+...
T Consensus       117 EAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~-------~le~~~i~~p~d-v-~VVrVmPNtPg~~  186 (525)
T 3fr7_A          117 ETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLG-------HLQSAGLDFPKN-I-SVIAVCPKGMGPS  186 (525)
T ss_dssp             HHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHH-------HHHHTTCCCCTT-S-EEEEEEESSCHHH
T ss_pred             HHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHH-------HHhhhcccCCCC-C-cEEEEecCCCchh
Confidence            8999999999999998888899999999999988 5667786532       2333   22221 1 2455666655443


Q ss_pred             -------h-----hcCCeEEEEec-CCHHHHHHHHHHHhcCCceEE
Q 014700          272 -------M-----NKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS  304 (420)
Q Consensus       272 -------~-----~g~~t~i~ia~-~d~e~~~~l~~ll~~~g~~v~  304 (420)
                             +     .|.+..+.+.. .+.+..+.+..++...|....
T Consensus       187 VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          187 VRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence                   2     35554544433 234667888899998887543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.23  E-value=4e-10  Score=111.05  Aligned_cols=170  Identities=14%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH-----------hcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~-----------~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      ..||+|||+|.||+.+|..++.+|  ++|++||++++.++...+           .+.....+.....-..+..++|+++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            469999999999999999999999  999999999876543221           1110000000001135778889999


Q ss_pred             hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE--EECcccHHHH
Q 014700          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA--LSGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v--l~GP~~a~ev  271 (420)
                      ++++||+||-|||.  ..-++++++|..++++++++-+.+.++.+.       .+.+.+..+ ..+..  +..|.+... 
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is-------~ia~~~~~p-~r~ig~HffNP~~~m~-  154 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS-------KLFTGLAHV-KQCIVAHPVNPPYYIP-  154 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH-------HHHTTCTTG-GGEEEEEECSSTTTCC-
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch-------hhhhhccCC-CcEEEecCCCCccccc-
Confidence            99999999999995  457889999999999999999888888764       233333322 12222  123332210 


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEE-EcCChhH
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRIS-TSSDVTG  311 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~-~s~Di~g  311 (420)
                          ..-++-+ ..+++.++++.++++..|.... ...|..|
T Consensus       155 ----LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG  192 (319)
T 3ado_A          155 ----LVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG  192 (319)
T ss_dssp             ----EEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             ----hHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC
Confidence                1112222 2468899999999999987754 5567644

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.11  E-value=2e-10  Score=108.23  Aligned_cols=134  Identities=17%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..|||+|||+|.||++||..|.++|  ++|++|++.                                ++ +.+||  |+
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G--~~V~~~~~~--------------------------------~~-~~~aD--il   47 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVG--HYVTVLHAP--------------------------------ED-IRDFE--LV   47 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTT--CEEEECSSG--------------------------------GG-GGGCS--EE
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCC--CEEEEecCH--------------------------------HH-hccCC--EE
Confidence            3589999999999999999999998  999999882                                12 45688  99


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEEC-cccHHHHhhcCCeEEEEecC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG-PSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~G-P~~a~ev~~g~~t~i~ia~~  284 (420)
                      |||...+.++++++.++++++++|++++..+..+   .+.. +.+ .|.     .++.+ |-+      +.+  ..+...
T Consensus        48 avP~~ai~~vl~~l~~~l~~g~ivvd~sgs~~~~---vl~~-~~~-~g~-----~fvg~HPm~------g~~--~~i~a~  109 (232)
T 3dfu_A           48 VIDAHGVEGYVEKLSAFARRGQMFLHTSLTHGIT---VMDP-LET-SGG-----IVMSAHPIG------QDR--WVASAL  109 (232)
T ss_dssp             EECSSCHHHHHHHHHTTCCTTCEEEECCSSCCGG---GGHH-HHH-TTC-----EEEEEEEEE------TTE--EEEEES
T ss_pred             EEcHHHHHHHHHHHHHhcCCCCEEEEECCcCHHH---HHHH-HHh-CCC-----cEEEeeeCC------CCc--eeeeCC
Confidence            9999999999999999999999999886333322   1111 112 122     22221 321      222  233345


Q ss_pred             CHHHHHHHHHHHhcCCceEEEcCChhHHHH
Q 014700          285 DRKLANAVQQLLASKHLRISTSSDVTGVEI  314 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~s~Di~g~e~  314 (420)
                      +++..+.++++++..|.+++..++-....+
T Consensus       110 d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~  139 (232)
T 3dfu_A          110 DELGETIVGLLVGELGGSIVEIADDKRAQL  139 (232)
T ss_dssp             SHHHHHHHHHHHHHTTCEECCCCGGGHHHH
T ss_pred             CHHHHHHHHHHHHHhCCEEEEeCHHHHhHH
Confidence            778899999999999999887765444433

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.10  E-value=9.1e-11  Score=116.25  Aligned_cols=135  Identities=13%  Similarity=0.194  Sum_probs=94.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|.+   |.+.  ...+.++.  .|+|+|||+|.||..+|..|+..|  ++|++|+|+++..+...+
T Consensus       126 R~~~~~~~~~~~~~w~~---~~~~--~~~~~~l~--g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~  196 (330)
T 2gcg_A          126 RRLPEAIEEVKNGGWTS---WKPL--WLCGYGLT--QSTVGIIGLGRIGQAIARRLKPFG--VQRFLYTGRQPRPEEAAE  196 (330)
T ss_dssp             TTHHHHHHHHHTTCCCS---CCTT--SSCBCCCT--TCEEEEECCSHHHHHHHHHHGGGT--CCEEEEESSSCCHHHHHT
T ss_pred             hCHHHHHHHHHcCCCcc---cCcc--cccCcCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcchhHHHh
Confidence            55667788889998865   4421  11122333  689999999999999999999888  899999987654444433


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .+              +... +++++++++|+|++++|.. .++.++ +++.+.+++++++|+++.|-..++ ..+.+.+
T Consensus       197 ~g--------------~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~-~aL~~aL  260 (330)
T 2gcg_A          197 FQ--------------AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQ-DDLYQAL  260 (330)
T ss_dssp             TT--------------CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             cC--------------ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHH
Confidence            22              2333 7888889999999999964 455555 455667888999999998744332 3344445


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       261 ~~  262 (330)
T 2gcg_A          261 AS  262 (330)
T ss_dssp             HH
T ss_pred             Hc
Confidence            44

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.09  E-value=1.2e-10  Score=115.58  Aligned_cols=137  Identities=15%  Similarity=0.258  Sum_probs=97.0

Q ss_pred             ccCCccccchhhhchhcc-eeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKL-VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ++-...+|.++.+.|.+. +.|.+.  ...+.++.  .|+|+|||+|.||..+|..|+..|  ++|++|+|+++. +...
T Consensus       117 R~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~l~--g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~-~~~~  189 (334)
T 2dbq_A          117 RHVVKGDRFVRSGEWKKRGVAWHPK--WFLGYDVY--GKTIGIIGLGRIGQAIAKRAKGFN--MRILYYSRTRKE-EVER  189 (334)
T ss_dssp             HTHHHHHHHHHTSHHHHTTCCCCTT--TTCCCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH-HHHH
T ss_pred             hCHHHHHHHHHcCCCcccccccccc--cccccCCC--CCEEEEEccCHHHHHHHHHHHhCC--CEEEEECCCcch-hhHh
Confidence            566677888999988621 135421  11122333  689999999999999999999988  899999998765 4333


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      +.|              +.. .++++++++||+|++++|... ++.++ +++.+.+++++++|++++|...++ ..+.+.
T Consensus       190 ~~g--------------~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~-~aL~~a  253 (334)
T 2dbq_A          190 ELN--------------AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDT-NALVKA  253 (334)
T ss_dssp             HHC--------------CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCH-HHHHHH
Confidence            332              122 378888899999999999755 55555 456677889999999998865543 234444


Q ss_pred             HHH
Q 014700          248 IPQ  250 (420)
Q Consensus       248 l~~  250 (420)
                      +.+
T Consensus       254 L~~  256 (334)
T 2dbq_A          254 LKE  256 (334)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.04  E-value=3.6e-10  Score=112.97  Aligned_cols=138  Identities=11%  Similarity=0.107  Sum_probs=98.2

Q ss_pred             ccCCccccchhhhchhcce----eccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLV----RWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~  166 (420)
                      |+-...+|.++.|.|++..    .|.+.+  ..+.++.  .++|||||+|.||..+|..|...|  ++|++|+|+... +
T Consensus       124 R~~~~~~~~~~~g~W~~~~~~~~~~~~~~--~~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~  196 (352)
T 3gg9_A          124 RRIPQYVASLKHGAWQQSGLKSTTMPPNF--GIGRVLK--GQTLGIFGYGKIGQLVAGYGRAFG--MNVLVWGRENSK-E  196 (352)
T ss_dssp             TTHHHHHHHHHTTCTTCCCCCCTTSCTTT--TSBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSHHHH-H
T ss_pred             hhHHHHHHHHHcCCCCccccccccccccc--ccCccCC--CCEEEEEeECHHHHHHHHHHHhCC--CEEEEECCCCCH-H
Confidence            6666788889999898742    355311  1223333  689999999999999999999887  999999998633 3


Q ss_pred             HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhH
Q 014700          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMM  244 (420)
Q Consensus       167 ~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~  244 (420)
                      ...+.|              +...+++++++++||+|++++|.. .++.++ ++..+.++++.++|+++.|-..++ +.+
T Consensus       197 ~~~~~g--------------~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~-~aL  261 (352)
T 3gg9_A          197 RARADG--------------FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEE-NGM  261 (352)
T ss_dssp             HHHHTT--------------CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCT-THH
T ss_pred             HHHhcC--------------ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcH-HHH
Confidence            333332              244458899999999999999953 455444 345677899999999998765443 334


Q ss_pred             HHHHHH
Q 014700          245 SQIIPQ  250 (420)
Q Consensus       245 se~l~~  250 (420)
                      .+.+.+
T Consensus       262 ~~aL~~  267 (352)
T 3gg9_A          262 VTALNR  267 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            455544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.04  E-value=7.4e-10  Score=108.45  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=77.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEE-eCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiV  203 (420)
                      ||||+|||+|.||+++|..|+++|..++|++|||++++++.+...  +.. .+.     +..+.+ ++++ +++++||+|
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~-~~~-----~~~~~~~~~d~-~~~~~aDvV   73 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-ANL-----EAHGNIVINDW-AALADADVV   73 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GGS-----SSCCEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhh-hhc-----CCCeEEEeCCH-HHhCCCCEE
Confidence            479999999999999999999987436999999999887766532  111 011     112333 4677 678999999


Q ss_pred             EEccChhh--------------------HHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          204 LHAMPVQF--------------------SSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       204 IlaVp~~~--------------------l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |+++|...                    ++++++.+.++. ++.+|+.++|+++.
T Consensus        74 iiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~  127 (309)
T 1hyh_A           74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV  127 (309)
T ss_dssp             EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred             EEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence            99999755                    478888887765 57777779997653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.04  E-value=6.4e-10  Score=108.85  Aligned_cols=103  Identities=12%  Similarity=0.296  Sum_probs=76.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHH--HHH-HhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQ--SIN-EKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~~~~~--~i~-~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +|||+|||+|+||+++|..|+.+|  +  +|++++|++++++  .+. ..+.  .+.+    +..+..+++. ++++++|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~~~~~~~~~~~~~~~~--~~~~----~~~v~~~~~~-~~~~~aD   77 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIAKERVEAEVLDMQHGS--SFYP----TVSIDGSDDP-EICRDAD   77 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHHHTG--GGST----TCEEEEESCG-GGGTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCChhHHHHHHHHHHhhh--hhcC----CeEEEeCCCH-HHhCCCC
Confidence            589999999999999999999998  7  9999999987665  332 2222  1111    2244555565 4588999


Q ss_pred             EEEEccChhh----------------HHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          202 YCLHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       202 iVIlaVp~~~----------------l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      +||++++...                ++++++.+.++ .++++|++++||++..
T Consensus        78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~  130 (319)
T 1lld_A           78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIA  130 (319)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHH
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHH
Confidence            9999996433                33778888775 6788999999998753

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.03  E-value=2.7e-10  Score=113.53  Aligned_cols=133  Identities=20%  Similarity=0.233  Sum_probs=95.3

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.|.|++   |.+.  ...+.++.  .++|||||+|.||..+|.+|...|  ++|.+|+|++...+.. .
T Consensus       144 R~~~~~~~~~r~g~W~~---~~~~--~~~g~~l~--gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~-~  213 (345)
T 4g2n_A          144 RRGYEADRMVRSGSWPG---WGPT--QLLGMGLT--GRRLGIFGMGRIGRAIATRARGFG--LAIHYHNRTRLSHALE-E  213 (345)
T ss_dssp             HTHHHHHHHHHTTCCCC---CCTT--TTCBCCCT--TCEEEEESCSHHHHHHHHHHHTTT--CEEEEECSSCCCHHHH-T
T ss_pred             hCHHHHHHHHHcCCCcc---cCcc--cccccccC--CCEEEEEEeChhHHHHHHHHHHCC--CEEEEECCCCcchhhh-c
Confidence            66677889999998876   5531  11233444  689999999999999999999877  9999999975322211 1


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                       +              +...+++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..++ +.+.+.+
T Consensus       214 -g--------------~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL  277 (345)
T 4g2n_A          214 -G--------------AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND-DALIEAL  277 (345)
T ss_dssp             -T--------------CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             -C--------------CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCH-HHHHHHH
Confidence             2              23345899999999999999994 4455555 445667889999999998865543 2333444


Q ss_pred             H
Q 014700          249 P  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       278 ~  278 (345)
T 4g2n_A          278 R  278 (345)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.03  E-value=2.1e-10  Score=113.64  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++-...+|.++.+.|..   |.+   ...+.++.  .++|||||+|.||..+|..|...|  ++|.+|+|++...+...
T Consensus       116 ~R~~~~~~~~~~~g~w~~---~~~---~~~~~~l~--g~tvGIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~  185 (330)
T 4e5n_A          116 GRHLRAADAFVRSGKFRG---WQP---RFYGTGLD--NATVGFLGMGAIGLAMADRLQGWG--ATLQYHEAKALDTQTEQ  185 (330)
T ss_dssp             HTTHHHHHHHHHTTCCCS---CCS---CCCCCCST--TCEEEEECCSHHHHHHHHHTTTSC--CEEEEECSSCCCHHHHH
T ss_pred             HhChHHHHHHHHhCCccc---cCc---cccCCccC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCCCCcHhHHH
Confidence            366677889999998875   764   22233444  789999999999999999998877  89999999863333333


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      +.|              +.. .+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..++ ..+.+.
T Consensus       186 ~~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~-~aL~~a  249 (330)
T 4e5n_A          186 RLG--------------LRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDE-AAVLAA  249 (330)
T ss_dssp             HHT--------------EEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCH-HHHHHH
Confidence            332              222 37889899999999999953 455555 356677899999999998855443 233444


Q ss_pred             HH
Q 014700          248 IP  249 (420)
Q Consensus       248 l~  249 (420)
                      +.
T Consensus       250 L~  251 (330)
T 4e5n_A          250 LE  251 (330)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.02  E-value=2.2e-10  Score=113.71  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=92.6

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|+..    .   ...+.++.  .++|+|||+|.||.++|..|...|  ++|++|+|+++..+    
T Consensus       137 R~~~~~~~~~~~g~w~~~----~---~~~~~~l~--g~~vgIIG~G~iG~~vA~~l~~~G--~~V~~~dr~~~~~~----  201 (333)
T 3ba1_A          137 RRICECDKYVRRGAWKFG----D---FKLTTKFS--GKRVGIIGLGRIGLAVAERAEAFD--CPISYFSRSKKPNT----  201 (333)
T ss_dssp             TTHHHHHHHHHTTGGGGC----C---CCCCCCCT--TCCEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCCTTC----
T ss_pred             hCHHHHHHHHHcCCCCcc----c---cccccccC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCchhcc----
Confidence            556677888888977531    0   11122333  679999999999999999999888  89999999864210    


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                                     ++....++++++++||+|++++|.. .++.++ +++.+.+++++++|++++|...++ +.+.+.+
T Consensus       202 ---------------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~-~aL~~aL  265 (333)
T 3ba1_A          202 ---------------NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDE-PELVSAL  265 (333)
T ss_dssp             ---------------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             ---------------CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCH-HHHHHHH
Confidence                           1234568889899999999999974 466666 345566788999999999876543 2344444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       266 ~~  267 (333)
T 3ba1_A          266 VE  267 (333)
T ss_dssp             HH
T ss_pred             Hc
Confidence            43

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.00  E-value=5.1e-10  Score=110.43  Aligned_cols=135  Identities=12%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r-~~~~~~~i~  169 (420)
                      ++-...++.++.+.|++   |.+.  ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+| +++.. ...
T Consensus       117 R~~~~~~~~~~~g~w~~---~~~~--~~~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~  186 (320)
T 1gdh_A          117 RRAGEGEKMIRTRSWPG---WEPL--ELVGEKLD--NKTLGIYGFGSIGQALAKRAQGFD--MDIDYFDTHRASSS-DEA  186 (320)
T ss_dssp             TTHHHHHHHHHTTCCCC---CCTT--TTCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCCHH-HHH
T ss_pred             ccHHHHHHHHHcCCCCc---cccc--cccCcCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcChh-hhh
Confidence            56667888899998864   4421  11122333  689999999999999999999887  89999999 76542 223


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      +.|              +...+++++++++||+|++++|.. .++.++ ++..+.+++++++|+++.|-..+. ..+.+.
T Consensus       187 ~~g--------------~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~-~aL~~a  251 (320)
T 1gdh_A          187 SYQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN-ELVVAA  251 (320)
T ss_dssp             HHT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCH-HHHHHH
Confidence            322              233347888889999999999964 455555 345677889999999988743332 233444


Q ss_pred             HHH
Q 014700          248 IPQ  250 (420)
Q Consensus       248 l~~  250 (420)
                      +.+
T Consensus       252 L~~  254 (320)
T 1gdh_A          252 LEA  254 (320)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.00  E-value=2.6e-10  Score=113.15  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=89.8

Q ss_pred             ccCCccccchhhhchhcceecccccccccc----chhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAK----TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~  166 (420)
                      ++-...++.++.+.|++   |..   ...+    .++.  .++|+|||+|.||.++|..|...|  ++|++|+|+++. +
T Consensus       114 R~~~~~~~~~~~g~w~~---~~~---~~~~~~~~~~l~--g~~vgIIG~G~iG~~vA~~l~~~G--~~V~~~d~~~~~-~  182 (333)
T 2d0i_A          114 RKIHYADKFIRRGEWES---HAK---IWTGFKRIESLY--GKKVGILGMGAIGKAIARRLIPFG--VKLYYWSRHRKV-N  182 (333)
T ss_dssp             HCHHHHHHHHHTTCCCC---HHH---HHTTSCCCCCST--TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCH-H
T ss_pred             hHHHHHHHHHHcCCCCc---Ccc---cccCCcccCCCC--cCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcch-h
Confidence            56667788889998854   321   0111    2333  689999999999999999999888  899999998765 3


Q ss_pred             HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHH-HhhhcCCCCCeEEEeccCCCcch
Q 014700          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       167 ~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ...+.+              +.. .++++++++||+|++++|.. .++.++. ++.+.++++ ++|++++|...++
T Consensus       183 ~~~~~g--------------~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~  242 (333)
T 2d0i_A          183 VEKELK--------------ARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDE  242 (333)
T ss_dssp             HHHHHT--------------EEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCH
T ss_pred             hhhhcC--------------cee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCH
Confidence            333322              233 37888889999999999976 5666653 455678889 9999998866543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.99  E-value=4.7e-10  Score=112.07  Aligned_cols=134  Identities=12%  Similarity=0.161  Sum_probs=94.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-.+.++.++.|.|+..   .   ......++.  .|+|+|||+|.||..+|..|...|  ++|.+|+|++...+...+
T Consensus       136 R~~~~~~~~~~~g~W~~~---~---~~~~~~~l~--gktvGIIG~G~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~  205 (351)
T 3jtm_A          136 RNFVPGYNQVVKGEWNVA---G---IAYRAYDLE--GKTIGTVGAGRIGKLLLQRLKPFG--CNLLYHDRLQMAPELEKE  205 (351)
T ss_dssp             HTHHHHHHHHHTTCCCHH---H---HHTTCCCST--TCEEEEECCSHHHHHHHHHHGGGC--CEEEEECSSCCCHHHHHH
T ss_pred             hCcHHHHHHHHcCCCccc---c---ccCCccccc--CCEEeEEEeCHHHHHHHHHHHHCC--CEEEEeCCCccCHHHHHh
Confidence            556677888888877642   0   011122333  689999999999999999999888  899999997644444444


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .|              +...++++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++ +.+.+.+
T Consensus       206 ~g--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL  270 (351)
T 3jtm_A          206 TG--------------AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMER-QAVVDAV  270 (351)
T ss_dssp             HC--------------CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             CC--------------CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCH-HHHHHHH
Confidence            33              23445899999999999999995 3455554 455667889999999998865543 2334444


Q ss_pred             H
Q 014700          249 P  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       271 ~  271 (351)
T 3jtm_A          271 E  271 (351)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.97  E-value=1.1e-09  Score=107.76  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      |...|||+|||+|.||+++|..|+.+|  + +|++||++++.++.....  +.. .+   ...+..+..++|. +++++|
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~~~~~~~~~~l~~~~-~~---~~~~~~i~~t~d~-~a~~~a   73 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAEGIPQGKALDITHSM-VM---FGSTSKVIGTDDY-ADISGS   73 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HH---HTCCCCEEEESCG-GGGTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCchHHHHHHHHHHhhh-hh---cCCCcEEEECCCH-HHhCCC
Confidence            344689999999999999999999998  7 999999998766543110  100 00   0113356777788 678999


Q ss_pred             cEEEEcc--------------C--hhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAM--------------P--VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaV--------------p--~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+||+++              +  ...++++++++.++. ++++++..+|+..
T Consensus        74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~  125 (317)
T 2ewd_A           74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLD  125 (317)
T ss_dssp             SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHH
Confidence            9999999              3  234788888988875 5888988998643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.97  E-value=3.8e-10  Score=109.90  Aligned_cols=126  Identities=11%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|++. .|         .++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++..+    
T Consensus        98 R~~~~~~~~~~~g~w~~~-~~---------~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~----  159 (290)
T 3gvx_A           98 KNILENNELMKAGIFRQS-PT---------TLLY--GKALGILGYGGIGRRVAHLAKAFG--MRVIAYTRSSVDQN----  159 (290)
T ss_dssp             TTHHHHHHHHHTTCCCCC-CC---------CCCT--TCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSCCCTT----
T ss_pred             HhhhhhhhHhhhcccccC-Cc---------eeee--cchheeeccCchhHHHHHHHHhhC--cEEEEEeccccccc----
Confidence            566677888888877652 11         1222  689999999999999999999988  99999999764211    


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                                     .+...+++++++++||+|++++|. ..++.++ ++..+.+++++++|++++|-..++ +.+.+.+
T Consensus       160 ---------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~aL  223 (290)
T 3gvx_A          160 ---------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK-PDMIGFL  223 (290)
T ss_dssp             ---------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             ---------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC-cchhhhh
Confidence                           023445889999999999999994 4555555 456677899999999998765543 3344444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       224 ~~  225 (290)
T 3gvx_A          224 KE  225 (290)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.97  E-value=5.5e-10  Score=111.06  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             cccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .|+-...+|.++.|.|++   |..   ...+.++.  .|+|||||+|.||.++|.+|...|  ++|.+|+|+++.     
T Consensus       142 ~R~~~~~~~~~~~g~W~~---~~~---~~~~~~l~--gktiGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~-----  206 (340)
T 4dgs_A          142 LRRVGDGDRLVREGRWAA---GEQ---LPLGHSPK--GKRIGVLGLGQIGRALASRAEAFG--MSVRYWNRSTLS-----  206 (340)
T ss_dssp             HTTHHHHHHHHHTTCC------------CCCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCT-----
T ss_pred             HhChHHHHHHHhcCCccc---ccC---cCcccccc--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCccc-----
Confidence            366677889999998875   210   01123344  689999999999999999999887  899999997642     


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ..              ......++++++++||+|++++|. ..++.++ ++..+.+++++++|+++.|-..+
T Consensus       207 ~~--------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvd  264 (340)
T 4dgs_A          207 GV--------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVD  264 (340)
T ss_dssp             TS--------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC----
T ss_pred             cc--------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccC
Confidence            00              123345899999999999999994 5577776 56677789999999999985544

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.94  E-value=1.8e-09  Score=107.16  Aligned_cols=131  Identities=11%  Similarity=0.127  Sum_probs=92.6

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|++.        ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+.+. +...+
T Consensus       139 R~~~~~~~~~~~g~W~~~--------~~~~~~l~--g~tvgIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~~~~~  205 (335)
T 2g76_A          139 RQIPQATASMKDGKWERK--------KFMGTELN--GKTLGILGLGRIGREVATRMQSFG--MKTIGYDPIISP-EVSAS  205 (335)
T ss_dssp             HTHHHHHHHHHTTCCCTG--------GGCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSCH-HHHHH
T ss_pred             hchHHHHHHHHcCCCCcc--------CCCCcCCC--cCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCCcch-hhhhh
Confidence            556677888888877541        11122333  679999999999999999999877  999999997654 22333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .|              +.. .++++++++||+|++++|.. .++.++ ++....++++.++|+++.|-..++ ..+.+.+
T Consensus       206 ~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~-~aL~~aL  269 (335)
T 2g76_A          206 FG--------------VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDE-GALLRAL  269 (335)
T ss_dssp             TT--------------CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCH-HHHHHHH
T ss_pred             cC--------------cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCH-HHHHHHH
Confidence            22              122 37889999999999999965 466655 456677899999999998754442 2334444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       270 ~~  271 (335)
T 2g76_A          270 QS  271 (335)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.93  E-value=1.1e-09  Score=115.28  Aligned_cols=121  Identities=16%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.|.|++.        ...+.++.  .++|+|||+|.||.++|..|...|  ++|++|+++... +...+
T Consensus       116 R~~~~~~~~~~~g~w~~~--------~~~~~~l~--g~~vgIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~-~~a~~  182 (529)
T 1ygy_A          116 RQIPAADASLREHTWKRS--------SFSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFG--AYVVAYDPYVSP-ARAAQ  182 (529)
T ss_dssp             TTHHHHHHHHHTTCCCGG--------GCCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCH-HHHHH
T ss_pred             hhhHHHHHHHHhCCCccc--------CcCccccC--CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            556677888888877642        11222333  689999999999999999999988  899999987642 23333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHHH-hhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEG-ISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~~-i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .|              +... ++++++++||+|++|+|.. .++.++.+ +.+.+++++++|++++|-..+
T Consensus       183 ~g--------------~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~  238 (529)
T 1ygy_A          183 LG--------------IELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  238 (529)
T ss_dssp             HT--------------CEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             cC--------------cEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhh
Confidence            33              1222 7888899999999999976 67777754 677789999999999886554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.92  E-value=1.5e-09  Score=106.50  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=91.4

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|++.        ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++. +...+
T Consensus       116 R~~~~~~~~~~~g~w~~~--------~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~-~~~~~  182 (307)
T 1wwk_A          116 RKIAFADRKMREGVWAKK--------EAMGIELE--GKTIGIIGFGRIGYQVAKIANALG--MNILLYDPYPNE-ERAKE  182 (307)
T ss_dssp             TTHHHHHHHHTTTCCCTT--------TCCBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH-HHHHH
T ss_pred             hCHHHHHHHHHcCCCCcc--------CcCCcccC--CceEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCCh-hhHhh
Confidence            556677888888877541        01122333  679999999999999999999888  899999998765 33333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .|              +.. .++++++++||+|++++|... ++.++ ++..+.+++++++|+++.|-..++ ..+.+.+
T Consensus       183 ~g--------------~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~-~aL~~aL  246 (307)
T 1wwk_A          183 VN--------------GKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDT-NALVKAL  246 (307)
T ss_dssp             TT--------------CEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             cC--------------ccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCH-HHHHHHH
Confidence            22              122 268888899999999999643 55555 345567889999999988744332 2344445


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       247 ~~  248 (307)
T 1wwk_A          247 KE  248 (307)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.92  E-value=1.2e-09  Score=110.50  Aligned_cols=125  Identities=11%  Similarity=0.068  Sum_probs=89.0

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.+.|+..  +.    .....++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++..+...+
T Consensus       163 R~~~~~~~~~~~g~W~~~--~~----~~~~~~l~--gktvGIIGlG~IG~~vA~~l~a~G--~~V~~~d~~~~~~~~~~~  232 (393)
T 2nac_A          163 RNYLPSHEWARKGGWNIA--DC----VSHAYDLE--AMHVGTVAAGRIGLAVLRRLAPFD--VHLHYTDRHRLPESVEKE  232 (393)
T ss_dssp             TTHHHHHHHHHTTCCCHH--HH----HTTCCCCT--TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCCHHHHHH
T ss_pred             hccHHHHHHHHcCCCCcc--cc----ccCCccCC--CCEEEEEeECHHHHHHHHHHHhCC--CEEEEEcCCccchhhHhh
Confidence            444567778888877541  11    11122333  689999999999999999999887  899999987543333333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .|              +....+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..+
T Consensus       233 ~G--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  289 (393)
T 2nac_A          233 LN--------------LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD  289 (393)
T ss_dssp             HT--------------CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred             cC--------------ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhh
Confidence            33              233347889999999999999953 456666 45667788999999999875443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.91  E-value=2.6e-10  Score=112.36  Aligned_cols=128  Identities=12%  Similarity=0.190  Sum_probs=90.5

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.+.|++.          ...++.  .|+|||||+|.||..+|..|...|  ++|++|+|+++..+    
T Consensus       115 R~~~~~~~~~~~g~W~~~----------~~~~l~--g~tvGIiG~G~IG~~vA~~l~~~G--~~V~~~dr~~~~~~----  176 (315)
T 3pp8_A          115 RRFDDYQALKNQALWKPL----------PEYTRE--EFSVGIMGAGVLGAKVAESLQAWG--FPLRCWSRSRKSWP----  176 (315)
T ss_dssp             TTHHHHHHHHHTTCCCCC----------CCCCST--TCCEEEECCSHHHHHHHHHHHTTT--CCEEEEESSCCCCT----
T ss_pred             hCChHHHHHHHhcccCCC----------CCCCcC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCchhhh----
Confidence            555667788888877652          111233  689999999999999999999887  99999999764211    


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                       +.  .         ......++++++++||+|++++|. ..++.++ ++....+++++++|+++.|-..++ +.+.+.+
T Consensus       177 -~~--~---------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~aL  243 (315)
T 3pp8_A          177 -GV--E---------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQE-ADLLAAL  243 (315)
T ss_dssp             -TC--E---------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             -hh--h---------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhH-HHHHHHH
Confidence             10  0         001124788899999999999994 4566666 556677899999999999865543 2333444


Q ss_pred             H
Q 014700          249 P  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       244 ~  244 (315)
T 3pp8_A          244 D  244 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.90  E-value=4.1e-10  Score=111.31  Aligned_cols=120  Identities=13%  Similarity=0.241  Sum_probs=84.9

Q ss_pred             ccCCcc-ccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           91 TRDGRD-RRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ++-... +|.++.+.|++.      .   ...++.  .++|||||+|.||..+|..|...|  ++|++|+|+++..+.+ 
T Consensus       111 R~~~~~~~~~~~~~~W~~~------~---~~~~l~--gktvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~-  176 (324)
T 3evt_A          111 RGYHAAWLNQRGARQWALP------M---TTSTLT--GQQLLIYGTGQIGQSLAAKASALG--MHVIGVNTTGHPADHF-  176 (324)
T ss_dssp             TTHHHHHHHHTTTCCSSCS------S---CCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCCCCTTC-
T ss_pred             hChhHHHHHHHhcCCcccC------C---CCcccc--CCeEEEECcCHHHHHHHHHHHhCC--CEEEEECCCcchhHhH-
Confidence            444445 677777766542      1   122333  679999999999999999999887  9999999976421110 


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                                     .......++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..+
T Consensus       177 ---------------~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          177 ---------------HETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             ---------------SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBC
T ss_pred             ---------------hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhh
Confidence                           0112234778889999999999994 4455555 45566788999999999886554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.89  E-value=1.8e-09  Score=108.46  Aligned_cols=135  Identities=11%  Similarity=0.141  Sum_probs=93.5

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~-V~l~~r~~~~~~~i~  169 (420)
                      ++-...++.++.+.|+.. .+     .....++.  .++|+|||+|.||..+|..|...|  ++ |++|+|++...+...
T Consensus       136 R~~~~~~~~~~~g~W~~~-~~-----~~~~~~l~--g~tvgIIG~G~IG~~vA~~l~~~G--~~~V~~~d~~~~~~~~~~  205 (364)
T 2j6i_A          136 RNFVPAHEQIINHDWEVA-AI-----AKDAYDIE--GKTIATIGAGRIGYRVLERLVPFN--PKELLYYDYQALPKDAEE  205 (364)
T ss_dssp             TTHHHHHHHHHTTCCCHH-HH-----HTTCCCST--TCEEEEECCSHHHHHHHHHHGGGC--CSEEEEECSSCCCHHHHH
T ss_pred             hChHHHHHHHHhCCCCcC-cc-----cCCcccCC--CCEEEEECcCHHHHHHHHHHHhCC--CcEEEEECCCccchhHHH
Confidence            555667888888877531 00     11122333  689999999999999999999887  87 999998764444333


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      +.|              +....+++++++.||+|++++|.. .++.++ ++..+.++++.++|+++.|-..++ +.+.+.
T Consensus       206 ~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~-~aL~~a  270 (364)
T 2j6i_A          206 KVG--------------ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVA-EDVAAA  270 (364)
T ss_dssp             HTT--------------EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCH-HHHHHH
Confidence            332              233457889899999999999964 455555 345677889999999998754443 234444


Q ss_pred             HHH
Q 014700          248 IPQ  250 (420)
Q Consensus       248 l~~  250 (420)
                      +.+
T Consensus       271 L~~  273 (364)
T 2j6i_A          271 LES  273 (364)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.89  E-value=3.9e-09  Score=104.53  Aligned_cols=103  Identities=21%  Similarity=0.242  Sum_probs=77.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHH--hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~--~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .|||+|||+|.||+++|..|+.+|  + +|.+||++++.++....  .+.. .++   ..+.++..++|+++++++||+|
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~~~~~~~~~~l~~~~-~~~---~~~~~i~~t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVKGMPEGKALDLSHVT-SVV---DTNVSVRAEYSYEAALTGADCV   82 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HHT---TCCCCEEEECSHHHHHTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECChhHHHHHHHHHHhhh-hcc---CCCCEEEEeCCHHHHhCCCCEE
Confidence            479999999999999999999998  6 89999999876655211  1111 111   1345678889998889999999


Q ss_pred             EEcc--Chh-------------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAM--PVQ-------------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaV--p~~-------------------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+++  |..                   .++++++++.++. ++.+++..+|..
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~  135 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL  135 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCch
Confidence            9998  521                   2677778888775 678887778744

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.89  E-value=1.2e-09  Score=108.91  Aligned_cols=125  Identities=11%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             ccCCccccchhhhc---hhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHH-hcCCCCeEEEEeCCHHHHH
Q 014700           91 TRDGRDRRKIVKVA---WEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQ  166 (420)
Q Consensus        91 ~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La-~aG~~~~V~l~~r~~~~~~  166 (420)
                      ++-...+|.++.|.   |++.  |.+  ....+.++.  .++|+|||+|.||..+|..|. ..|  ++|++|+|+++..+
T Consensus       130 R~~~~~~~~~~~g~~~~w~~~--~~~--~~~~~~~l~--g~~vgIIG~G~IG~~vA~~l~~~~G--~~V~~~d~~~~~~~  201 (348)
T 2w2k_A          130 RLASYSERAARTGDPETFNRV--HLE--IGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLG--MKLVYYDVAPADAE  201 (348)
T ss_dssp             HTHHHHHHHHTTCCHHHHHHH--HHH--HHTTCCCST--TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSCCCHH
T ss_pred             hChHHHHHHHHcCCCcccccc--ccc--ccccCcCCC--CCEEEEEEECHHHHHHHHHHHHhcC--CEEEEECCCCcchh
Confidence            66667788888887   7431  110  001122333  679999999999999999998 877  89999999865444


Q ss_pred             HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCC
Q 014700          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       167 ~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ...+.+              +...+++++++++||+|++++|.. .++.++ +++.+.+++++++|+++.|-.
T Consensus       202 ~~~~~g--------------~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~  260 (348)
T 2w2k_A          202 TEKALG--------------AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPV  260 (348)
T ss_dssp             HHHHHT--------------CEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGG
T ss_pred             hHhhcC--------------cEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence            443322              233357888889999999999964 355555 345567889999999988743

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.88  E-value=3.1e-09  Score=106.56  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.|.|.    |.+.. ...+.++.  .++|||||+|.||..+|..|...|  ++|.+|+|+... +...+
T Consensus       147 R~~~~~~~~~r~g~~~----w~~~~-~~~~~~l~--gktvGIIGlG~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  216 (365)
T 4hy3_A          147 RGIVDADIAFQEGTEL----WGGEG-NASARLIA--GSEIGIVGFGDLGKALRRVLSGFR--ARIRVFDPWLPR-SMLEE  216 (365)
T ss_dssp             HTTTHHHHHHHHTCCC----CSSSS-TTSCCCSS--SSEEEEECCSHHHHHHHHHHTTSC--CEEEEECSSSCH-HHHHH
T ss_pred             hchhHHHHHHHcCCcc----ccccc-cccccccC--CCEEEEecCCcccHHHHHhhhhCC--CEEEEECCCCCH-HHHhh
Confidence            6777788888888752    54211 11223334  689999999999999999998777  999999997532 23333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .|              +. ..+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..+
T Consensus       217 ~g--------------~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vd  272 (365)
T 4hy3_A          217 NG--------------VE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVD  272 (365)
T ss_dssp             TT--------------CE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSC
T ss_pred             cC--------------ee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhC
Confidence            33              12 237899999999999999954 566666 45667789999999999886554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.87  E-value=2e-09  Score=105.95  Aligned_cols=119  Identities=11%  Similarity=0.069  Sum_probs=86.4

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.+.|+.   +       .+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++.. ...+
T Consensus       118 R~~~~~~~~~~~g~w~~---~-------~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~-~~~~  182 (313)
T 2ekl_A          118 RKMYTSMALAKSGIFKK---I-------EGLELA--GKTIGIVGFGRIGTKVGIIANAMG--MKVLAYDILDIRE-KAEK  182 (313)
T ss_dssp             HTHHHHHHHHHTTCCCC---C-------CCCCCT--TCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSCCHH-HHHH
T ss_pred             hCHHHHHHHHHcCCCCC---C-------CCCCCC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCCcchh-HHHh
Confidence            56667788888887752   1       112233  679999999999999999999888  9999999987653 2333


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChhh-HHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~~-l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .|              +.. .+++++++.+|+|++++|... ++.++ ++..+.++++.++|+++.|-..+
T Consensus       183 ~g--------------~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd  238 (313)
T 2ekl_A          183 IN--------------AKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN  238 (313)
T ss_dssp             TT--------------CEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC
T ss_pred             cC--------------cee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC
Confidence            22              122 378888899999999999643 54444 34556688899999998874433

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.86  E-value=1.5e-07  Score=102.35  Aligned_cols=169  Identities=16%  Similarity=0.186  Sum_probs=114.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-------C-CCCCCCCCCCCCceEEeCCHHHhc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------C-NCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-------~-~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      .++||+|||+|.||..+|..++.+|  ++|+++|++++.++...+.-       . .............+..+++.++ +
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l  391 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-L  391 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-G
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCC--CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-H
Confidence            3679999999999999999999999  99999999987654332110       0 0000011122345677888765 7


Q ss_pred             cCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHHhh
Q 014700          198 LGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALELMN  273 (420)
Q Consensus       198 ~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev~~  273 (420)
                      .+||+||-||+.  ..-+++++++..++++++++.+-+.++...       .+.+.+..+ ..+..+  ..|...     
T Consensus       392 ~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~-------~ia~~~~~p-~r~ig~HFfnP~~~-----  458 (742)
T 3zwc_A          392 STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD-------DIASSTDRP-QLVIGTHFFSPAHV-----  458 (742)
T ss_dssp             GSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHHTTSSCG-GGEEEEECCSSTTT-----
T ss_pred             hhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChH-------HHHhhcCCc-cccccccccCCCCC-----
Confidence            899999999995  457788999999999999998888877753       233333322 122222  223221     


Q ss_pred             cCCe-EEEEe-cCCHHHHHHHHHHHhcCCceEEEcCChhH
Q 014700          274 KLPT-AMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (420)
Q Consensus       274 g~~t-~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~Di~g  311 (420)
                       .+. -++-+ ..+++.++.+.++.+..|...+...|..|
T Consensus       459 -m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG  497 (742)
T 3zwc_A          459 -MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG  497 (742)
T ss_dssp             -CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT
T ss_pred             -CceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence             111 12222 24688999999999999998888888654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.86  E-value=2.1e-09  Score=107.28  Aligned_cols=137  Identities=10%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             ccCCccccchhhhchhcceeccccccc-ccc-chhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRS-KAK-TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      ++-...++.++.+.|...  |.. ++. ..+ .++.  .++|+|||+|.||..+|..|...|  ++|++|+|+.+... .
T Consensus       135 R~~~~~~~~~~~g~w~~~--~~~-~~~~~~~~~~l~--g~tvGIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~-~  206 (347)
T 1mx3_A          135 RRATWLHQALREGTRVQS--VEQ-IREVASGAARIR--GETLGIIGLGRVGQAVALRAKAFG--FNVLFYDPYLSDGV-E  206 (347)
T ss_dssp             HCHHHHHHHHHTTCCCCS--HHH-HHHHTTTCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCTTH-H
T ss_pred             HhHHHHHHHHHcCCcccc--ccc-ccccccCccCCC--CCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCCcchhh-H
Confidence            555667778888877431  110 000 001 1233  689999999999999999999887  89999998754311 1


Q ss_pred             HHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (420)
Q Consensus       169 ~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se  246 (420)
                      .+.|              +....+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..++ +.+.+
T Consensus       207 ~~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~-~aL~~  271 (347)
T 1mx3_A          207 RALG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDE-KALAQ  271 (347)
T ss_dssp             HHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCH-HHHHH
T ss_pred             hhcC--------------CeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhH-HHHHH
Confidence            2222              233347888899999999999964 455555 455667889999999998855443 33444


Q ss_pred             HHHH
Q 014700          247 IIPQ  250 (420)
Q Consensus       247 ~l~~  250 (420)
                      .+.+
T Consensus       272 aL~~  275 (347)
T 1mx3_A          272 ALKE  275 (347)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.86  E-value=1.8e-09  Score=109.73  Aligned_cols=128  Identities=15%  Similarity=0.184  Sum_probs=90.6

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.++.|.|++.   .     ..+.++.  .++|||||+|.||..+|.+|...|  ++|++|+|+++.     .
T Consensus       119 R~i~~~~~~~~~g~W~~~---~-----~~~~el~--gktlGiIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-----~  181 (404)
T 1sc6_A          119 RGVPEANAKAHRGVGNKL---A-----AGSFEAR--GKKLGIIGYGHIGTQLGILAESLG--MYVYFYDIENKL-----P  181 (404)
T ss_dssp             HTHHHHHHHHHHTCCC-------------CCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCC-----C
T ss_pred             hChHHHHHHHHcCCcccc---C-----CCccccC--CCEEEEEeECHHHHHHHHHHHHCC--CEEEEEcCCchh-----c
Confidence            556677888888877652   1     1223444  789999999999999999999887  999999986531     0


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .             .++....+++++++.||+|++++|.. .++.++ ++....+++++++|+++.|-..++ ..+.+.+
T Consensus       182 ~-------------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~-~aL~~aL  247 (404)
T 1sc6_A          182 L-------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI-PALADAL  247 (404)
T ss_dssp             C-------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCH-HHHHHHH
T ss_pred             c-------------CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhH-HHHHHHH
Confidence            0             01344458999999999999999964 455555 445667889999999998865543 2333444


Q ss_pred             H
Q 014700          249 P  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       248 ~  248 (404)
T 1sc6_A          248 A  248 (404)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.85  E-value=3.1e-09  Score=105.39  Aligned_cols=130  Identities=12%  Similarity=0.132  Sum_probs=91.2

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...+|.++.+.|.    |..    ..+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++..  +.+
T Consensus       120 R~~~~~~~~~~~g~w~----~~~----~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~~~  185 (333)
T 1j4a_A          120 RQDKAMDEKVARHDLR----WAP----TIGREVR--DQVVGVVGTGHIGQVFMQIMEGFG--AKVITYDIFRNPE--LEK  185 (333)
T ss_dssp             HTHHHHHHHHHTTBCC----CTT----CCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCHH--HHH
T ss_pred             cCHHHHHHHHHcCCCc----cCC----cccccCC--CCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcchh--HHh
Confidence            5666778888888773    431    2223344  679999999999999999999887  8999999987543  221


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                       ..              ...++++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..++ +.+.+.+
T Consensus       186 -~~--------------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~-~aL~~aL  249 (333)
T 1j4a_A          186 -KG--------------YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDT-DAVIRGL  249 (333)
T ss_dssp             -TT--------------CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             -hC--------------eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCH-HHHHHHH
Confidence             11              11236888889999999999954 355555 345567889999999988754443 3344444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       250 ~~  251 (333)
T 1j4a_A          250 DS  251 (333)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.85  E-value=9.1e-09  Score=101.27  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=74.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.||+++|..|+.+|  +  +|++||+++++++.+...  +.. .+.    .+..+.. ++. +++++||+|
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~~~~~~~~~~~l~~~~-~~~----~~~~i~~-~d~-~~~~~aDvV   71 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVDKKRAEGDALDLIHGT-PFT----RRANIYA-GDY-ADLKGSDVV   71 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSSHHHHHHHHHHHHHHG-GGS----CCCEEEE-CCG-GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCChHHHHHHHHHHHhhh-hhc----CCcEEEe-CCH-HHhCCCCEE
Confidence            69999999999999999999998  7  999999998877665421  111 111    1223444 354 568999999


Q ss_pred             EEccChhh----------------HHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          204 LHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       204 IlaVp~~~----------------l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |+++|...                ++++++.+.++. ++.++|.++|++..
T Consensus        72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~  121 (319)
T 1a5z_A           72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDV  121 (319)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHH
Confidence            99999532                567778887774 67788888987653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.85  E-value=2.3e-09  Score=109.04  Aligned_cols=128  Identities=14%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...++.+++|.|++.   .     ..+.++.  .++|||||+|.||..+|..|...|  ++|++|+++++..    .
T Consensus       130 R~i~~~~~~~~~g~W~~~---~-----~~~~el~--gktvGIIGlG~IG~~vA~~l~~~G--~~V~~yd~~~~~~----~  193 (416)
T 3k5p_A          130 RRIFPRSVSAHAGGWEKT---A-----IGSREVR--GKTLGIVGYGNIGSQVGNLAESLG--MTVRYYDTSDKLQ----Y  193 (416)
T ss_dssp             TTHHHHHHHHHTTCCCCC---C-----TTCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCCCC----B
T ss_pred             cccHHHHHhhhccccccc---C-----CCCccCC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCcchhc----c
Confidence            566677888888877762   1     1122344  689999999999999999999887  9999999864210    0


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                                    .......+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++ +.+.+.+
T Consensus       194 --------------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~-~aL~~aL  258 (416)
T 3k5p_A          194 --------------GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL-EALAKVL  258 (416)
T ss_dssp             --------------TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCH-HHHHHHH
T ss_pred             --------------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhH-HHHHHHH
Confidence                          0123446899999999999999995 4455555 345667889999999999866553 2333444


Q ss_pred             H
Q 014700          249 P  249 (420)
Q Consensus       249 ~  249 (420)
                      .
T Consensus       259 ~  259 (416)
T 3k5p_A          259 Q  259 (416)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.83  E-value=5.9e-09  Score=107.94  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=84.7

Q ss_pred             CeEEEEcccHH-HHHHHHHHHhc--CC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGam-G~alA~~La~a--G~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.+ |.++|..|+.+  +. .++|.+||+++++++.++...  ..+++...++..+.+++|+++++++||+|
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~--~~~l~~~~~~~~I~~t~D~~eal~~AD~V  106 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGAC--DVFIREKAPDIEFAATTDPEEAFTDVDFV  106 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHH--HHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHH--HHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence            59999999999 77788888877  32 379999999998877765432  12333444567888889998889999999


Q ss_pred             EEccChhh------------------------------------HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          204 LHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       204 IlaVp~~~------------------------------------l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      |+++|...                                    +.++++.+..+- |+.++|..+|-++     .+.+.
T Consensus       107 Viaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd-----i~T~~  180 (472)
T 1u8x_X          107 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA-----IVAEA  180 (472)
T ss_dssp             EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH-----HHHHH
T ss_pred             EEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH-----HHHHH
Confidence            99998732                                    445556666654 6888888888653     34455


Q ss_pred             HHHHh
Q 014700          248 IPQAL  252 (420)
Q Consensus       248 l~~~l  252 (420)
                      +.+..
T Consensus       181 ~~k~~  185 (472)
T 1u8x_X          181 TRRLR  185 (472)
T ss_dssp             HHHHS
T ss_pred             HHHhC
Confidence            55554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.83  E-value=8.2e-09  Score=101.23  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||+++|..|+.++.+++|++||+++++++.+...-...  .+....+..+..++|+++ +++||+||+++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~--~~~~~~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES--GPVGLFDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT--HHHHTCCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhh--hhcccCCcEEEECCCHHH-HCCCCEEEEeC
Confidence            699999999999999999998633389999999987776543210000  000011335677788876 89999999999


Q ss_pred             Chh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       208 p~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |..                .++++++.+.++. ++..++.++|.+.
T Consensus        78 ~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~  122 (310)
T 1guz_A           78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLD  122 (310)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchH
Confidence            742                1356667777774 6777777888654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.83  E-value=2.2e-09  Score=105.06  Aligned_cols=126  Identities=19%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|+..   .+      ..++.  .++|+|||+|.||..+|..|...|  ++|.+|+|+++  +.   
T Consensus        99 R~~~~~~~~~~~g~w~~~---~~------~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~dr~~~--~~---  160 (303)
T 1qp8_A           99 KRIIQYGEKMKRGDYGRD---VE------IPLIQ--GEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPK--EG---  160 (303)
T ss_dssp             TTHHHHHHHHHTTCCCCC---SC------CCCCT--TCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCC--CS---
T ss_pred             hCHHHHHHHHHcCCCCCC---CC------CCCCC--CCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcc--cc---
Confidence            566677888888877541   10      11223  679999999999999999999888  89999998764  11   


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHH-HhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~-~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                       +.              ....+++++++.||+|++++|.. .++.++. +..+.+++++++|+++.|-..++ ..+.+.+
T Consensus       161 -~~--------------~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~-~aL~~aL  224 (303)
T 1qp8_A          161 -PW--------------RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR-DGVLRIL  224 (303)
T ss_dssp             -SS--------------CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             -Cc--------------ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCH-HHHHHHH
Confidence             10              11236788899999999999965 4666663 56677899999999998744432 2344444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       225 ~~  226 (303)
T 1qp8_A          225 KE  226 (303)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.81  E-value=7.7e-09  Score=102.30  Aligned_cols=102  Identities=24%  Similarity=0.408  Sum_probs=74.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHH--hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~--~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .|||+|||+|.||+++|..|+.+|  + +|.+||++++.++....  .+... +   ...+.++..++|. +++++||+|
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~~~l~~~~~~l~~~~~-~---~~~~~~i~~t~d~-~al~~aD~V   86 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIEGVPQGKALDLNHCMA-L---IGSPAKIFGENNY-EYLQNSDVV   86 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSTTHHHHHHHHHHHHHH-H---HTCCCCEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHhHhh-c---cCCCCEEEECCCH-HHHCCCCEE
Confidence            479999999999999999999998  6 89999999877654211  11100 0   0123467888888 679999999


Q ss_pred             EEcc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+++  |.              ...+++++++.++. ++.+++..+|..
T Consensus        87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~  134 (328)
T 2hjr_A           87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPL  134 (328)
T ss_dssp             EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence            9998  42              22667778887775 677877778743

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.80  E-value=1.6e-09  Score=106.52  Aligned_cols=119  Identities=16%  Similarity=0.165  Sum_probs=87.2

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|++   |.+.  ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++..+    
T Consensus       115 R~~~~~~~~~~~g~w~~---~~~~--~~~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~~----  181 (311)
T 2cuk_A          115 RRVVEGAAYARDGLWKA---WHPE--LLLGLDLQ--GLTLGLVGMGRIGQAVAKRALAFG--MRVVYHARTPKPLP----  181 (311)
T ss_dssp             TTHHHHHHHHHTTCCCC---CCTT--TTCBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSSS----
T ss_pred             cChHHHHHHHHcCCCCc---cccc--cccCcCCC--CCEEEEEEECHHHHHHHHHHHHCC--CEEEEECCCCcccc----
Confidence            66667888899998864   4321  11122333  679999999999999999999887  89999999764211    


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHHH-HhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl~-~i~~~l~~~~iVVs~snGi~~~  239 (420)
                                      +. ..+++++++.||+|++++|.. .++.++. +....++++.++|+++.|-..+
T Consensus       182 ----------------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd  235 (311)
T 2cuk_A          182 ----------------YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD  235 (311)
T ss_dssp             ----------------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred             ----------------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccC
Confidence                            01 237888889999999999975 4555553 4556788999999998874433

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.80  E-value=1.3e-09  Score=107.68  Aligned_cols=120  Identities=17%  Similarity=0.252  Sum_probs=87.3

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.+.|++.          ...++.  .++|||||+|.||..+|..|...|  ++|++|+|+++..+.+  
T Consensus       116 R~~~~~~~~~~~g~W~~~----------~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~--  179 (324)
T 3hg7_A          116 RQLPLYREQQKQRLWQSH----------PYQGLK--GRTLLILGTGSIGQHIAHTGKHFG--MKVLGVSRSGRERAGF--  179 (324)
T ss_dssp             TTHHHHHHHHHTTCCCCC----------CCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCCTTC--
T ss_pred             hChHHHHHHHhhCCCcCC----------CCcccc--cceEEEEEECHHHHHHHHHHHhCC--CEEEEEcCChHHhhhh--
Confidence            666677888888877652          111333  689999999999999999999888  9999999876311100  


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                                    .......++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       180 --------------~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde  237 (324)
T 3hg7_A          180 --------------DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE  237 (324)
T ss_dssp             --------------SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCH
T ss_pred             --------------hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCH
Confidence                          0112235788999999999999995 3455555 345667889999999998865543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.79  E-value=1.4e-08  Score=105.27  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             CCeEEEEcccHH--HHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSF--GTAMAAHVANK----KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGam--G~alA~~La~a----G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      +|||+|||+|.|  |.++|..|++.    |  ++|.+||+++++++.+....  ..+++....+.++.+++|+++++++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~--~eV~L~Di~~e~l~~~~~~~--~~~l~~~~~~~~I~~ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSG--STVTLMDIDEERLDAILTIA--KKYVEEVGADLKFEKTMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTT--CEEEEECSCHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCC--CEEEEEeCCHHHHHHHHHHH--HHHhccCCCCcEEEEECCHHHHhCCC
Confidence            579999999996  67778888754    5  89999999998877665432  12233334566788889998889999


Q ss_pred             cEEEEccCh
Q 014700          201 DYCLHAMPV  209 (420)
Q Consensus       201 DiVIlaVp~  209 (420)
                      |+||++++.
T Consensus        79 D~VIiaagv   87 (480)
T 1obb_A           79 DFVINTAMV   87 (480)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999974

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.78  E-value=2.1e-08  Score=98.05  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|.||+++|..|+.+|  +  +|.+||+++++++.....-....  + +..+..+.. ++. +++++||+||+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~~~~~~~~~~~l~~~~--~-~~~~~~i~~-~~~-~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRDEDRAQAEAEDIAHAA--P-VSHGTRVWH-GGH-SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHTTSC--C-TTSCCEEEE-ECG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHhhhhhh--h-hcCCeEEEE-CCH-HHhCCCCEEEE
Confidence            69999999999999999999988  7  99999999876553222110100  1 111223333 454 56899999999


Q ss_pred             ccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +++..                .++++++++.++ .++.+++..+|+.+
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~  120 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD  120 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence            99532                247777888877 47888887888764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.77  E-value=5.2e-08  Score=94.95  Aligned_cols=115  Identities=11%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|.||+++|..|+.+|...+|.+||++++.++  .+.-.+... ++   ..+..+.+++| .+++++||+||+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~-~~---~~~~~i~~t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GI---DKYPKIVGGAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-TT---TCCCEEEEESC-GGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhh-hc---CCCCEEEEeCC-HHHhCCCCEEEE
Confidence            799999999999999999999882129999999998764  222112111 11   13446777778 678999999999


Q ss_pred             ccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       206 aVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +....                .++++.+.+.++ .++.+++..+|-++     .+...+.+..|
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd-----~~t~~~~k~~g  133 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD-----VMTYIMWKESG  133 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH-----HHHHHHHHHSC
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcch-----HHHHHHHHhcC
Confidence            86421                244555666665 57888888888543     33445555433

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.77  E-value=6.3e-09  Score=103.56  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=90.2

Q ss_pred             ccCCccccchh-hhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700           91 TRDGRDRRKIV-KVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus        91 ~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      |+-...++.++ .|.|    .|.+   ...+.++.  .++|||||+|.||..+|..|...|  ++|++|+|+++.  .. 
T Consensus       120 R~~~~~~~~~~~~g~~----~w~~---~~~~~~l~--gktvgIiGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~--~~-  185 (343)
T 2yq5_A          120 RKIGEFRYRMDHDHDF----TWPS---NLISNEIY--NLTVGLIGVGHIGSAVAEIFSAMG--AKVIAYDVAYNP--EF-  185 (343)
T ss_dssp             HTHHHHHHHHHHHCCC----CCCG---GGCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCG--GG-
T ss_pred             hchHHHHHHHHHcCCc----cccc---CCCccccC--CCeEEEEecCHHHHHHHHHHhhCC--CEEEEECCChhh--hh-
Confidence            56666777777 7766    2542   12233444  689999999999999999999887  999999998642  11 


Q ss_pred             HhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 014700          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (420)
Q Consensus       170 ~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~  247 (420)
                      +.              .+.. .++++++++||+|++++|. ..++.++ ++....++++.++|+++.|-..++ +.+.+.
T Consensus       186 ~~--------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~-~aL~~a  249 (343)
T 2yq5_A          186 EP--------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDT-GALIKA  249 (343)
T ss_dssp             TT--------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHH
T ss_pred             hc--------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhH-HHHHHH
Confidence            10              1122 2789999999999999995 3444444 345566889999999998865543 233444


Q ss_pred             HHH
Q 014700          248 IPQ  250 (420)
Q Consensus       248 l~~  250 (420)
                      +.+
T Consensus       250 L~~  252 (343)
T 2yq5_A          250 LQD  252 (343)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.76  E-value=4e-08  Score=83.23  Aligned_cols=98  Identities=12%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCH---HHh-ccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDA---KTA-LLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~---~ea-l~~aD  201 (420)
                      .|+|+|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+. +... +..+         .++.   .++ +.++|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDALV-INGD---------CTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSSEE-EESC---------TTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHhcCcEE-EEcC---------CCCHHHHHHcCcccCC
Confidence            479999999999999999999988  8999999999888877753 2110 0000         0122   222 56899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +||+++|.......+..+.+.++++.+|+ .+++..
T Consensus        72 ~vi~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~~  106 (140)
T 1lss_A           72 MYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISEIE  106 (140)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSSTT
T ss_pred             EEEEeeCCchHHHHHHHHHHHcCCCEEEE-EecCHh
Confidence            99999998765555555555566665554 455443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.74  E-value=1.9e-08  Score=99.29  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      +.+|||+|||+|.||.++|..|+..|  + +|.++|+++++++.....-...  +.....+..+..++|. +++++||+|
T Consensus         2 ~~~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~~~l~~~~~~l~~~--~~~~~~~~~i~~t~d~-~al~~aD~V   76 (322)
T 1t2d_A            2 APKAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVKNMPHGKALDTSHT--NVMAYSNCKVSGSNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHTH--HHHHTCCCCEEEECCG-GGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhh--hhhcCCCcEEEECCCH-HHhCCCCEE
Confidence            44689999999999999999999998  5 8999999987665322210000  0000123357777888 679999999


Q ss_pred             EEcc--Ch-------------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAM--PV-------------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaV--p~-------------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+++  |.                   ..++++++++.++. ++.++|..+|..
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~  129 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPV  129 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCCh
Confidence            9998  42                   13667777787776 678877778743

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.74  E-value=1.9e-08  Score=103.58  Aligned_cols=118  Identities=15%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHhc--CC-CCeEEEEeCCH--HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGam-G~alA~~La~a--G~-~~~V~l~~r~~--~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .|||+|||+|.+ |.+++..|+.+  +. .++|.+||+++  ++++.++...  ..+++....+..+.+++|.++++++|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~--~~~~~~~~~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--KRMVEKAGVPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHH--HHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence            579999999999 88888888873  22 27999999999  8877654322  12223334566788888998889999


Q ss_pred             cEEEEccChhh------------------------------------HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhH
Q 014700          201 DYCLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMM  244 (420)
Q Consensus       201 DiVIlaVp~~~------------------------------------l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~  244 (420)
                      |+||++++...                                    +.++++.+..+- |+.+++..+|.++     .+
T Consensus        85 D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPvd-----iv  158 (450)
T 1s6y_A           85 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG-----MV  158 (450)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH-----HH
T ss_pred             CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH-----HH
Confidence            99999998522                                    445556666654 6888888898653     45


Q ss_pred             HHHHHHHh
Q 014700          245 SQIIPQAL  252 (420)
Q Consensus       245 se~l~~~l  252 (420)
                      .+.+.+..
T Consensus       159 T~a~~k~~  166 (450)
T 1s6y_A          159 TEAVLRYT  166 (450)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            56666654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.68  E-value=1.3e-08  Score=100.93  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=86.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.|.|.    |..   ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+.+..  + +
T Consensus       118 R~~~~~~~~~~~g~w~----~~~---~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~-~  183 (333)
T 1dxy_A          118 RNMGKVQAQLQAGDYE----KAG---TFIGKELG--QQTVGVMGTGHIGQVAIKLFKGFG--AKVIAYDPYPMKG--D-H  183 (333)
T ss_dssp             TTHHHHHHHHHTTCHH----HHT---CCCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSS--C-C
T ss_pred             hhHHHHHHHHHcCCcc----ccc---CCCccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCcchh--h-H
Confidence            6666778888899874    411   11223444  679999999999999999999887  9999999876421  0 0


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .              .+. ..+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..+
T Consensus       184 ~--------------~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  239 (333)
T 1dxy_A          184 P--------------DFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID  239 (333)
T ss_dssp             T--------------TCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred             h--------------ccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC
Confidence            0              012 237888899999999999964 355555 44566788999999999875444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.68  E-value=1.1e-08  Score=101.42  Aligned_cols=130  Identities=12%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...+|.++.|.|.    |..   ...+.++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++..  + +
T Consensus       119 R~~~~~~~~~~~g~w~----~~~---~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~-~  184 (331)
T 1xdw_A          119 RHTAYTTSRTAKKNFK----VDA---FMFSKEVR--NCTVGVVGLGRIGRVAAQIFHGMG--ATVIGEDVFEIKG--I-E  184 (331)
T ss_dssp             TTHHHHHHHHTTTCCC----CCS---TTCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCS--C-T
T ss_pred             hCHHHHHHHHHcCCCc----ccc---CcCccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCccHH--H-H
Confidence            6666778888888773    421   11223334  679999999999999999999887  8999999876421  1 1


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccChh-hHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~~-~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l  248 (420)
                      .              .+. ..+++++++.||+|++++|.. .++.++ ++....++++.++|+++.|-..++ +.+.+.+
T Consensus       185 ~--------------~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~-~aL~~aL  248 (331)
T 1xdw_A          185 D--------------YCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDT-EAVIEAV  248 (331)
T ss_dssp             T--------------TCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             h--------------ccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccH-HHHHHHH
Confidence            0              012 237888899999999999954 444444 345566889999999998754443 2344444


Q ss_pred             HH
Q 014700          249 PQ  250 (420)
Q Consensus       249 ~~  250 (420)
                      .+
T Consensus       249 ~~  250 (331)
T 1xdw_A          249 ES  250 (331)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.67  E-value=3.5e-08  Score=96.78  Aligned_cols=92  Identities=16%  Similarity=0.254  Sum_probs=71.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +.++|+|||+|.||.+++..|.+. |. .+|.+|+|++++.+.+.+....           .+...++++++++++|+||
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~-~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~e~v~~aDiVi  201 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSF-KEVRIWNRTKENAEKFADTVQG-----------EVRVCSSVQEAVAGADVII  201 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCC-SEEEEECSSHHHHHHHHHHSSS-----------CCEECSSHHHHHTTCSEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHhhC-----------CeEEeCCHHHHHhcCCEEE
Confidence            467999999999999999999886 52 4999999999998888764210           2455678989899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|+|..  +.++..  +.++++++|+++.
T Consensus       202 ~atp~~--~~v~~~--~~l~~g~~vi~~g  226 (312)
T 2i99_A          202 TVTLAT--EPILFG--EWVKPGAHINAVG  226 (312)
T ss_dssp             ECCCCS--SCCBCG--GGSCTTCEEEECC
T ss_pred             EEeCCC--CcccCH--HHcCCCcEEEeCC
Confidence            999953  233322  5678899988874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.63  E-value=2.8e-08  Score=85.87  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=70.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.||..++..|...|  ++|++|+|++++.+.+.+...           ..+...++++++++++|+||.|
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRNIDHVRAFAEKYE-----------YEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESCHHHHHHHHHHHT-----------CEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHhC-----------CceEeecCHHHHhcCCCEEEEe
Confidence            679999999999999999999887  789999999998887765421           1233456788888999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|....  ++  -...++++.+++.+...
T Consensus        88 t~~~~~--~~--~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           88 TSSKTP--IV--EERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             SCCSSC--SB--CGGGCCTTCEEEECCSS
T ss_pred             CCCCCc--Ee--eHHHcCCCCEEEEccCC
Confidence            997531  11  12456778888887643

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.60  E-value=4.6e-08  Score=94.16  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=71.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||.+++..|.+.|  ++|++|+|++++++.+.+..             ++.+.++++++++++|+||.|
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g--~~V~v~~r~~~~~~~l~~~~-------------g~~~~~~~~~~~~~aDiVi~a  193 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEG--AKVFLWNRTKEKAIKLAQKF-------------PLEVVNSPEEVIDKVQVIVNT  193 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSHHHHHHHTTTS-------------CEEECSCGGGTGGGCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHc-------------CCeeehhHHhhhcCCCEEEEe
Confidence            579999999999999999999998  79999999998877765431             234445777778899999999


Q ss_pred             cChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          207 MPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      +|.....++...+ ...++++++|+++..
T Consensus       194 tp~~~~~~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          194 TSVGLKDEDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             SSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            9976432111112 345778899998875

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.59  E-value=2.8e-07  Score=94.69  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             CCeEEEEcccHH--HHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSF--GTAMAAHVANKK-SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGam--G~alA~~La~aG-~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .|||+|||+|.|  |..++..|+... ...+|.+||++++.++.++..+.   .+..  .+.++.+++|+++++++||+|
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~---~l~~--~~~~I~~TtD~~eAl~dADfV   79 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGN---HSGN--GRWRYEAVSTLKKALSAADIV   79 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHT---TSTT--SCEEEEEESSHHHHHTTCSEE
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHH---HHhc--cCCeEEEECCHHHHhcCCCEE
Confidence            479999999995  789999988632 11299999999988777655432   2222  556788999999999999999


Q ss_pred             EEccChh--------------------------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHH
Q 014700          204 LHAMPVQ--------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS  245 (420)
Q Consensus       204 IlaVp~~--------------------------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~s  245 (420)
                      |++++..                                      .+.++++.+..+ .|+.++|..+|-++     .++
T Consensus        80 I~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvd-----i~t  153 (450)
T 3fef_A           80 IISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMS-----VCT  153 (450)
T ss_dssp             EECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH-----HHH
T ss_pred             EeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchH-----HHH
Confidence            9999631                                      144555566554 36788888888553     344


Q ss_pred             HHHHHHh
Q 014700          246 QIIPQAL  252 (420)
Q Consensus       246 e~l~~~l  252 (420)
                      +.+.+.+
T Consensus       154 ~~~~k~~  160 (450)
T 3fef_A          154 RVLYKVF  160 (450)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHC
Confidence            4554443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.54  E-value=2.8e-07  Score=80.51  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-HhcCCCCCCCCCCCCCceEEeCC---HHHh-ccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-EKHCNCRYFPEQKLPENVIATTD---AKTA-LLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~-~~g~~~~~l~~~~l~~~i~a~td---~~ea-l~~aD  201 (420)
                      .++|.|+|+|.||..++..|.+.|  ++|++++|+++.++.+. +.+... +..+         ..+   +.++ +.++|
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~g~~~-~~~d---------~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNSEFSGFT-VVGD---------AAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCTTCCSEE-EESC---------TTSHHHHHTTTGGGCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHhcCCCcE-EEec---------CCCHHHHHHcCcccCC
Confidence            579999999999999999999998  89999999987665544 222100 0000         012   2222 56799


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +||++++.......+..+...+.+...++..+++..
T Consensus        87 ~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           87 MVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            999999987655555555554445566777776554

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.52  E-value=8.4e-08  Score=95.12  Aligned_cols=122  Identities=18%  Similarity=0.191  Sum_probs=86.2

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++-...++.++.+.|..   |.    ...+.++.  .++|||||.|.+|..+|..+..-|  .+|..|++....  ...+
T Consensus       114 r~~~~~~~~~~~~~~~~---~~----~~~~~~l~--g~tvGIiG~G~IG~~va~~~~~fg--~~v~~~d~~~~~--~~~~  180 (334)
T 3kb6_A          114 KRLKRIEDRVKKLNFSQ---DS----EILARELN--RLTLGVIGTGRIGSRVAMYGLAFG--MKVLCYDVVKRE--DLKE  180 (334)
T ss_dssp             TTHHHHHHHHHTTCCCC---CG----GGCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH--HHHH
T ss_pred             hcccccccccccccccc---cc----ccccceec--CcEEEEECcchHHHHHHHhhcccC--ceeeecCCccch--hhhh
Confidence            44455666677776654   33    22233444  679999999999999999998877  999999986542  2222


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      .+              +. ..++++.++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       181 ~~--------------~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde  237 (334)
T 3kb6_A          181 KG--------------CV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDT  237 (334)
T ss_dssp             TT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             cC--------------ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccH
Confidence            22              11 23789999999999999994 4455555 334556889999999999866553

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.51  E-value=1.1e-06  Score=86.80  Aligned_cols=95  Identities=17%  Similarity=0.262  Sum_probs=70.7

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      ..++||+|||+|.||..++..|.+.. +.+|. +++++++.++.+.+..             ++...+|+++++.  ++|
T Consensus         2 ~~~~rvgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~~l~~~~~D   67 (344)
T 3euw_A            2 SLTLRIALFGAGRIGHVHAANIAANP-DLELVVIADPFIEGAQRLAEAN-------------GAEAVASPDEVFARDDID   67 (344)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHTT-------------TCEEESSHHHHTTCSCCC
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCCC
Confidence            34679999999999999999998863 26766 7899998888776632             2356789999887  799


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        68 ~V~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~~   99 (344)
T 3euw_A           68 GIVIGSPTSTHVDLITRAVE---RGIPAL-CEKPID   99 (344)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCCEE-ECSCSC
T ss_pred             EEEEeCCchhhHHHHHHHHH---cCCcEE-EECCCC
Confidence            99999999887777665544   344444 344443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.50  E-value=4.3e-07  Score=81.34  Aligned_cols=96  Identities=17%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC---HHHh--ccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD---AKTA--LLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td---~~ea--l~~a  200 (420)
                      .++|.|+|+|.||..+|..|.+. |  ++|++++++++.++.+.+.|.... ..+         .++   +.++  +.++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~~g~~~~-~gd---------~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRSEGRNVI-SGD---------ATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHHTTCCEE-ECC---------TTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHHCCCCEE-EcC---------CCCHHHHHhccCCCCC
Confidence            56899999999999999999998 8  899999999998888876553211 000         012   2343  5789


Q ss_pred             cEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccC
Q 014700          201 DYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       201 DiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+||+++|... ...++..+. .+.++..++..+++
T Consensus       107 d~vi~~~~~~~~~~~~~~~~~-~~~~~~~ii~~~~~  141 (183)
T 3c85_A          107 KLVLLAMPHHQGNQTALEQLQ-RRNYKGQIAAIAEY  141 (183)
T ss_dssp             CEEEECCSSHHHHHHHHHHHH-HTTCCSEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence            99999999654 334444333 34445566655543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.50  E-value=2.4e-07  Score=91.43  Aligned_cols=102  Identities=24%  Similarity=0.317  Sum_probs=72.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHH----HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .+|||+|||+|.||.++|..|+.+|  + +|.+||+++++++.    +.....   ++   ..+..+.+++|. +++++|
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~~~~~g~~~dl~~~~~---~~---~~~~~v~~t~d~-~a~~~a   76 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAEGTPQGKGLDIAESSP---VD---GFDAKFTGANDY-AAIEGA   76 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHHHHH---HH---TCCCCEEEESSG-GGGTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCchhHHHHHHHHhchhh---hc---CCCCEEEEeCCH-HHHCCC
Confidence            3579999999999999999999998  6 99999999876542    222100   00   123356777787 679999


Q ss_pred             cEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+||++...                ..++++++.+..+- ++.+++..+|-++
T Consensus        77 DiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd  128 (324)
T 3gvi_A           77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLD  128 (324)
T ss_dssp             SEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred             CEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcH
Confidence            999999641                12455666666664 6788888888543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.50  E-value=4.5e-07  Score=83.69  Aligned_cols=100  Identities=16%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      |||.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+. +.. .+..+..-      ...++++ +.++|+||+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~l~~~~~~~-~i~gd~~~------~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKDRELCEEFAKKLKAT-IIHGDGSH------KEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHHSSSE-EEESCTTS------HHHHHHHTCCTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHcCCe-EEEcCCCC------HHHHHhcCcccCCEEEE
Confidence            79999999999999999999998  9999999999998887653 211 01111100      0113333 678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +++++.....+..+...+.+...+|...+..
T Consensus        72 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           72 LTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             CCSCHHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             ecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            9998876666655555443455566655543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.50  E-value=4.4e-07  Score=88.22  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||.++|..|...|  .+|++|+|+++..+.+.+.+..            .....++++.++++|+|+++
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITEMGLV------------PFHTDELKEHVKDIDICINT  222 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCE------------EEEGGGHHHHSTTCSEEEEC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCe------------EEchhhHHHHhhCCCEEEEC
Confidence            689999999999999999999988  8999999998776665543210            11124678888999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|...+.   ++....++++.++|++..|
T Consensus       223 ~p~~~i~---~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          223 IPSMILN---QTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             CSSCCBC---HHHHTTSCTTCEEEECSST
T ss_pred             CChhhhC---HHHHHhCCCCCEEEEEeCC
Confidence            9974332   1234567889999999865

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.50  E-value=5.5e-07  Score=88.17  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=71.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|.||..+|..|+..|. .+|.++|+++++++.....-....  ........+..++|. +++++||+||++
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~-~~v~L~Di~~~~~~g~~~dl~~~~--~~~~~~~~i~~t~d~-~a~~~aD~Vi~a   77 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEAS--PIEGFDVRVTGTNNY-ADTANSDVIVVT   77 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSSSSHHHHHHHHHHTTH--HHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-CeEEEEeCCccHHHHHHHhHHHhH--hhcCCCeEEEECCCH-HHHCCCCEEEEc
Confidence            4799999999999999999999882 289999998866543221100000  000112356777788 678999999999


Q ss_pred             cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +..                ..++++++.+.++. ++.+++..+|.+
T Consensus        78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv  122 (309)
T 1ur5_A           78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPL  122 (309)
T ss_dssp             CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCch
Confidence            732                12455666776664 678877778744

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.48  E-value=1.1e-07  Score=95.66  Aligned_cols=92  Identities=18%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|||||.|.||..+|..|...|  ++|.+|++..+..    ..+.              . ..++++++++||+|+++
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~----~~g~--------------~-~~~l~ell~~aDvV~l~  174 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGLG--WKVLVCDPPRQAR----EPDG--------------E-FVSLERLLAEADVISLH  174 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTT--CEEEEECHHHHHH----STTS--------------C-CCCHHHHHHHCSEEEEC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCChhhh----ccCc--------------c-cCCHHHHHHhCCEEEEe
Confidence            679999999999999999999888  9999999865421    1110              1 13788889999999999


Q ss_pred             cChhh-----HHHHH-HHhhhcCCCCCeEEEeccCCCcc
Q 014700          207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       207 Vp~~~-----l~~vl-~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      +|...     ++.++ ++....+++++++|+++.|-..+
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd  213 (380)
T 2o4c_A          175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVD  213 (380)
T ss_dssp             CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBC
T ss_pred             ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccC
Confidence            99543     45555 34567788999999999875443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.48  E-value=5.1e-07  Score=87.53  Aligned_cols=92  Identities=22%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.||..+|..|...|  .+|++|+|+++..+.+.+.|..            .....++++.++++|+|+++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~~  220 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAEMGME------------PFHISKAAQELRDVDVCINT  220 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTSE------------EEEGGGHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCCCe------------ecChhhHHHHhcCCCEEEEC
Confidence            579999999999999999999888  8999999998776655543310            11124677888999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|...+.+   +....++++.++|++..|
T Consensus       221 ~p~~~i~~---~~l~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          221 IPALVVTA---NVLAEMPSHTFVIDLASK  246 (293)
T ss_dssp             CSSCCBCH---HHHHHSCTTCEEEECSST
T ss_pred             CChHHhCH---HHHHhcCCCCEEEEecCC
Confidence            99744321   223456788999998864

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.48  E-value=9.2e-08  Score=96.25  Aligned_cols=93  Identities=13%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|||||+|.||..+|..|...|  ++|.+|++..+..    ..+               ....++++++++||+|+++
T Consensus       119 gktvGIIGlG~IG~~vA~~l~a~G--~~V~~~d~~~~~~----~~~---------------~~~~sl~ell~~aDiV~l~  177 (381)
T 3oet_A          119 DRTIGIVGVGNVGSRLQTRLEALG--IRTLLCDPPRAAR----GDE---------------GDFRTLDELVQEADVLTFH  177 (381)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTT--CEEEEECHHHHHT----TCC---------------SCBCCHHHHHHHCSEEEEC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCChHHh----ccC---------------cccCCHHHHHhhCCEEEEc
Confidence            679999999999999999999888  9999998754321    000               1124789999999999999


Q ss_pred             cChh-h----HHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPVQ-F----SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~~-~----l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|.. .    ++.++ ++....+++++++|+++.|-..++
T Consensus       178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde  217 (381)
T 3oet_A          178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDN  217 (381)
T ss_dssp             CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence            9943 3    44444 345566889999999998865543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.46  E-value=4.5e-07  Score=74.34  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=66.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|+|+|+|+|.||..++..|.+.| .++|++++|+++..+.+...+..... .      .+.-..+++++++++|+||.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~~~~~~~~~-~------d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLAALAVLNRMGVATKQ-V------DAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHHTTTCEEEE-C------CTTCHHHHHHHTTTCSEEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhCCCcEEE-e------cCCCHHHHHHHHcCCCEEEEC
Confidence            579999999999999999999987 37899999999888777643321100 0      000012345667899999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|......+++....   .+...+.++
T Consensus        77 ~~~~~~~~~~~~~~~---~g~~~~~~~  100 (118)
T 3ic5_A           77 APFFLTPIIAKAAKA---AGAHYFDLT  100 (118)
T ss_dssp             SCGGGHHHHHHHHHH---TTCEEECCC
T ss_pred             CCchhhHHHHHHHHH---hCCCEEEec
Confidence            998776666665543   355555554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.45  E-value=9.7e-07  Score=86.80  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|.+|.+++..|+..+...+|.++|+++++++.....  +.. .++      ..+++..+..+++++||+||
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~-~~~------~~~~i~~~~~~a~~~aDvVi   79 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGL-PFM------GQMSLYAGDYSDVKDCDVIV   79 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSC-CCT------TCEEEC--CGGGGTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhH-Hhc------CCeEEEECCHHHhCCCCEEE
Confidence            579999999999999999999987222899999998654321111  110 111      23333323356689999999


Q ss_pred             EccChhh----------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~~----------------l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++++...                ++++++.+.++ .++.+|+..+|-+
T Consensus        80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  126 (318)
T 1y6j_A           80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPV  126 (318)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSH
T ss_pred             EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcH
Confidence            9987422                46677777776 4677777777743

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.44  E-value=1.2e-06  Score=74.85  Aligned_cols=95  Identities=13%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH---Hh-ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TA-LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~---ea-l~~aDi  202 (420)
                      +++|.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+.+.... ..+         .++.+   ++ +.++|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~~~~~~~-~gd---------~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKEKIELLEDEGFDAV-IAD---------PTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEE-ECC---------TTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCCCcEE-ECC---------CCCHHHHHhCCcccCCE
Confidence            578999999999999999999998  999999999999888877543111 001         11222   21 468999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ||+++++......+-.....+. ...++...+
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHC-CCCEEEEES
T ss_pred             EEEecCCHHHHHHHHHHHHHhC-CceEEEEEc
Confidence            9999996554333333333333 333444443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.44  E-value=1e-06  Score=86.20  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH---HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV---CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~---~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++||+|||+|.||..+|..|+.+|...+|.++|++++.   +..+...          . ..++..++|+ +++++||+|
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~----------~-~~~i~~t~d~-~~l~~aD~V   81 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIF----------N-LPNVEISKDL-SASAHSKVV   81 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHH----------T-CTTEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhh----------c-CCCeEEeCCH-HHHCCCCEE
Confidence            47999999999999999999998822299999998752   1122211          0 1256777888 668999999


Q ss_pred             EEcc-------------Ch--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          204 LHAM-------------PV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       204 IlaV-------------p~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      |++.             ..  ..++++++++..+. ++.+++..+|.++     .+++.+.+..+
T Consensus        82 i~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~-----~~t~~~~~~~~  140 (303)
T 2i6t_A           82 IFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVE-----IMTYVTWKLST  140 (303)
T ss_dssp             EECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             EEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHH-----HHHHHHHHhcC
Confidence            9997             21  23677778887775 7888888888433     45555655533

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.42  E-value=1.5e-06  Score=74.71  Aligned_cols=95  Identities=12%  Similarity=0.302  Sum_probs=65.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH---HHh-ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~---~ea-l~~aDi  202 (420)
                      .++|.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+.+.... ..+.         ++.   +++ +.++|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~~g~~~i-~gd~---------~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRERGVRAV-LGNA---------ANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEE-ESCT---------TSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHcCCCEE-ECCC---------CCHHHHHhcCcccCCE
Confidence            468999999999999999999998  999999999999988887553211 1110         122   221 468999


Q ss_pred             EEEccChhhHH-HHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSS-SFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~-~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ||+++|.+..- .++..+.. +.++..+|...+
T Consensus        75 vi~~~~~~~~n~~~~~~a~~-~~~~~~iiar~~  106 (140)
T 3fwz_A           75 LILTIPNGYEAGEIVASARA-KNPDIEIIARAH  106 (140)
T ss_dssp             EEECCSCHHHHHHHHHHHHH-HCSSSEEEEEES
T ss_pred             EEEECCChHHHHHHHHHHHH-HCCCCeEEEEEC
Confidence            99999976533 34443333 334555665554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.40  E-value=2e-06  Score=83.44  Aligned_cols=94  Identities=10%  Similarity=0.133  Sum_probs=69.4

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .++||+|||+|.||.. ++..|.+.. +.++. +++++++.++.+.+...             +...+|+++++.++|+|
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~-------------~~~~~~~~~ll~~~D~V   70 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSE-RFEFVGAFTPNKVKREKICSDYR-------------IMPFDSIESLAKKCDCI   70 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCS-SSEEEEEECSCHHHHHHHHHHHT-------------CCBCSCHHHHHTTCSEE
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcC-------------CCCcCCHHHHHhcCCEE
Confidence            3579999999999996 888887743 26777 78999998888776421             11246889988899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        71 ~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~  100 (308)
T 3uuw_A           71 FLHSSTETHYEIIKILLN---LGVHVY-VDKPLA  100 (308)
T ss_dssp             EECCCGGGHHHHHHHHHH---TTCEEE-ECSSSS
T ss_pred             EEeCCcHhHHHHHHHHHH---CCCcEE-EcCCCC
Confidence            999999887777665543   345444 455444

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.40  E-value=1.2e-06  Score=86.13  Aligned_cols=105  Identities=13%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ++||+|||+|.||.++|..|+..+...+|.++|++++..+.....-..  ..+  .+...+++.++..+++++||+||++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~--~~~--~~~~~~~i~~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH--GKV--FAPKPVDIWHGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH--HTT--SSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH--Hhh--hcCCCeEEEcCcHHHhCCCCEEEEc
Confidence            579999999999999999998887435899999998754432111000  000  0111233333445679999999999


Q ss_pred             cChh----------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      .+..                ...++++.+.++. ++.+++..+|.+
T Consensus        82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv  126 (316)
T 1ldn_A           82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV  126 (316)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred             CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCch
Confidence            6532                2455666676665 677777778744

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.39  E-value=1.7e-06  Score=85.21  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=70.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||+|||+|.||.++|..|+..+.. +|.++|+++++++.....-.+...+  ...+..+..+++. +++++||+||++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~--~~~~~~v~~t~d~-~a~~~aDvVIi~   80 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPI--EGVDFKVRGTNDY-KDLENSDVVIVT   80 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHH--HTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhh--cCCCcEEEEcCCH-HHHCCCCEEEEc
Confidence            57999999999999999999998832 9999999987654222110000000  0012345656675 578999999998


Q ss_pred             cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ...                ..++++++.+..+- ++.+++..+|.+
T Consensus        81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv  125 (321)
T 3p7m_A           81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL  125 (321)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence            632                12455666676665 677888788754

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.37  E-value=2.8e-06  Score=84.16  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=70.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      .++||+|||+|.||..++..|.+...+.++. +++++++.++.+.+..             ++...+|+++++.  ++|+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~   78 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-------------GARGHASLTDMLAQTDADI   78 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-------------CCEEESCHHHHHHHCCCSE
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCCCE
Confidence            3579999999999999999998861126765 8899999888776642             2456789998876  7999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        79 V~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~a  109 (354)
T 3q2i_A           79 VILTTPSGLHPTQSIECSE---AGFHVM-TEKPMA  109 (354)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred             EEECCCcHHHHHHHHHHHH---CCCCEE-EeCCCc
Confidence            9999999887776655543   355554 345443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.37  E-value=1.4e-06  Score=81.63  Aligned_cols=81  Identities=21%  Similarity=0.292  Sum_probs=62.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      |||+|||+|.||..++..|.+.|  ++| .+|++++. .+                   .  ..+|+++++ .++|+|++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g--~~lv~v~d~~~~-~~-------------------~--~~~~~~~l~~~~~DvVv~   56 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNG--FEIAAILDVRGE-HE-------------------K--MVRGIDEFLQREMDVAVE   56 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-CT-------------------T--EESSHHHHTTSCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC--CEEEEEEecCcc-hh-------------------h--hcCCHHHHhcCCCCEEEE
Confidence            69999999999999999999777  887 68888741 10                   0  346888888 68999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|.....+++...   ++.++.+++...+
T Consensus        57 ~~~~~~~~~~~~~~---l~~G~~vv~~~~~   83 (236)
T 2dc1_A           57 AASQQAVKDYAEKI---LKAGIDLIVLSTG   83 (236)
T ss_dssp             CSCHHHHHHHHHHH---HHTTCEEEESCGG
T ss_pred             CCCHHHHHHHHHHH---HHCCCcEEEECcc
Confidence            99988777766544   3467788877654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.36  E-value=5.5e-07  Score=85.79  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      +|+|||+|.||.+++..|.+.|  ++|++|+|++++.+.+.+...             .. .++++++ +++|+||+|+|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g--~~v~v~~r~~~~~~~l~~~~~-------------~~-~~~~~~~-~~~Divi~~tp  180 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAG--LEVWVWNRTPQRALALAEEFG-------------LR-AVPLEKA-REARLLVNATR  180 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHT-------------CE-ECCGGGG-GGCSEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc-------------cc-hhhHhhc-cCCCEEEEccC
Confidence            8999999999999999999988  799999999988777765421             11 2467777 88999999999


Q ss_pred             hhhHHHHHHHh-hhcCCCCCeEEEeccC
Q 014700          209 VQFSSSFLEGI-SDYVDPGLPFISLSKG  235 (420)
Q Consensus       209 ~~~l~~vl~~i-~~~l~~~~iVVs~snG  235 (420)
                      ......+...+ .+.++++++|+++..+
T Consensus       181 ~~~~~~~~~~l~~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          181 VGLEDPSASPLPAELFPEEGAAVDLVYR  208 (263)
T ss_dssp             TTTTCTTCCSSCGGGSCSSSEEEESCCS
T ss_pred             CCCCCCCCCCCCHHHcCCCCEEEEeecC
Confidence            76422110111 3567788999887654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.36  E-value=2.2e-06  Score=84.95  Aligned_cols=96  Identities=15%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc--cCC
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGA  200 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal--~~a  200 (420)
                      |+.++||+|||+|.||..++..|.+.. +++|. +++++++.++.+.+..             ++...+|+++++  .++
T Consensus         2 M~~~~~vgiiG~G~~g~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~-------------g~~~~~~~~~~l~~~~~   67 (354)
T 3db2_A            2 MYNPVGVAAIGLGRWAYVMADAYTKSE-KLKLVTCYSRTEDKREKFGKRY-------------NCAGDATMEALLAREDV   67 (354)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEECSSHHHHHHHHHHH-------------TCCCCSSHHHHHHCSSC
T ss_pred             CCCcceEEEEccCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHc-------------CCCCcCCHHHHhcCCCC
Confidence            334579999999999999999998762 26755 7899999888776542             112346888888  569


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        68 D~V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~  100 (354)
T 3db2_A           68 EMVIITVPNDKHAEVIEQCAR---SGKHIY-VEKPIS  100 (354)
T ss_dssp             CEEEECSCTTSHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             CEEEEeCChHHHHHHHHHHHH---cCCEEE-EccCCC
Confidence            999999998877666655443   345444 445443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.34  E-value=1.1e-06  Score=86.81  Aligned_cols=105  Identities=14%  Similarity=0.039  Sum_probs=74.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..+||+|||+|.||.++|..|+..|.-.+|.++|++++.++.....  +...     +.....+..++|+++ +++||+|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~-----~~~~~~i~~t~d~~~-~~daDiV   93 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL-----FLHTAKIVSGKDYSV-SAGSKLV   93 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG-----GSCCSEEEEESSSCS-CSSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh-----cccCCeEEEcCCHHH-hCCCCEE
Confidence            4689999999999999999999988334899999998765432211  1100     112335667778876 8999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++...                ..++++++++.++ .++.+++..+|-.+
T Consensus        94 IitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvd  142 (330)
T 3ldh_A           94 VITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGT  142 (330)
T ss_dssp             EECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH
T ss_pred             EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccH
Confidence            998532                1356677777777 57888888888543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.34  E-value=2.2e-06  Score=84.54  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ..|||+|||+|.||.++|..|+..|...+|.++|+++++++.    ++..  .+ ++     ..++.+.++..+++++||
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~--~~-~~-----~~~v~i~~~~~~a~~~aD   75 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHG--KA-FA-----PQPVKTSYGTYEDCKDAD   75 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHT--GG-GS-----SSCCEEEEECGGGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhc--cc-cc-----cCCeEEEeCcHHHhCCCC
Confidence            468999999999999999999998832389999999886654    4431  11 11     112333333345789999


Q ss_pred             EEEEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +||++....                .++++.+.+..+ .++.+++.++|-++
T Consensus        76 vVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd  126 (326)
T 3pqe_A           76 IVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVD  126 (326)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred             EEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHH
Confidence            999987421                144555666665 46788888888543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.33  E-value=5.4e-07  Score=89.82  Aligned_cols=100  Identities=12%  Similarity=0.213  Sum_probs=71.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +.++|+|||+|.||.+++..|.......+|.+|+|++++++++.+....   .++    ..+...++++++++++|+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~---~~g----~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE---YSG----LTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT---CTT----CEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh---ccC----ceEEEeCCHHHHHhcCCEEEE
Confidence            4579999999999999998876431127899999999998888765211   001    124556789999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |+|+.....++.  ...+++++.|+.+..
T Consensus       201 aTps~~~~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          201 VTADKAYATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             CCCCSSEEEEEC--GGGCCTTCEEEECSC
T ss_pred             eccCCCCCceec--HHHcCCCCEEEECCC
Confidence            999753222221  256778888887753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.33  E-value=1.2e-06  Score=86.20  Aligned_cols=105  Identities=21%  Similarity=0.280  Sum_probs=69.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~--~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..+||+|||+|.||.++|..|+.+|  + +|.++|++  ++.++-....-.+..  +-......+..+++. +++++||+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~~~~~~~~g~a~dl~~~~--~~~~~~~~i~~t~d~-~a~~~aDv   81 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIPQLENPTKGKALDMLEAS--PVQGFDANIIGTSDY-ADTADSDV   81 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCGGGHHHHHHHHHHHHHHH--HHHTCCCCEEEESCG-GGGTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeccchHHHHHHhhhhHHHhh--hhccCCCEEEEcCCH-HHhCCCCE
Confidence            3579999999999999999999988  7 99999999  444332211100000  000112346666675 46899999


Q ss_pred             EEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          203 CLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       203 VIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ||++...                ..++++.+.+.++ .++.+++..+|..
T Consensus        82 VIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv  130 (315)
T 3tl2_A           82 VVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV  130 (315)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence            9999731                1245566666665 4678888888744

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.33  E-value=4.7e-06  Score=81.71  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ++||+|||+|.||..++..|.+.. +.+|. +++++++.++.+.+..             ++. .+|+++++.  ++|+|
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~D~V   67 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNA-DARLVAVADAFPAAAEAIAGAY-------------GCE-VRTIDAIEAAADIDAV   67 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT-------------TCE-ECCHHHHHHCTTCCEE
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCC-CcEEEEEECCCHHHHHHHHHHh-------------CCC-cCCHHHHhcCCCCCEE
Confidence            579999999999999999998863 27776 7899999888877642             233 568888876  79999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+
T Consensus        68 ~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~   96 (331)
T 4hkt_A           68 VICTPTDTHADLIERFAR---AGKAIF-CEKPI   96 (331)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-ECSCS
T ss_pred             EEeCCchhHHHHHHHHHH---cCCcEE-EecCC
Confidence            999999887777665544   344444 34443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.31  E-value=8.4e-07  Score=76.77  Aligned_cols=84  Identities=11%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ..++|+|||+    |.||..++..|.+.|  ++|+.++++.+.   +                .++.+..+++|+.+.+|
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G--~~V~~vnp~~~~---i----------------~G~~~~~s~~el~~~vD   71 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDE---I----------------EGLKCYRSVRELPKDVD   71 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSE---E----------------TTEECBSSGGGSCTTCC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCC--CEEEEeCCCCCe---E----------------CCeeecCCHHHhCCCCC
Confidence            3579999999    999999999999988  886666654311   1                13456668888777899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      ++++++|...+.++++++.. ...+.+++.
T Consensus        72 lvii~vp~~~v~~v~~~~~~-~g~~~i~~~  100 (138)
T 1y81_A           72 VIVFVVPPKVGLQVAKEAVE-AGFKKLWFQ  100 (138)
T ss_dssp             EEEECSCHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             EEEEEeCHHHHHHHHHHHHH-cCCCEEEEc
Confidence            99999999999999988766 334444443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.31  E-value=4.4e-06  Score=82.40  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ++||+|||+|.||..++..|.+.. +.++. +++++++.++.+.+....            ....+|+++++.  ++|+|
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~V   68 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMID-DAILYAISDVREDRLREMKEKLGV------------EKAYKDPHELIEDPNVDAV   68 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGST-TEEEEEEECSCHHHHHHHHHHHTC------------SEEESSHHHHHHCTTCCEE
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHhCC------------CceeCCHHHHhcCCCCCEE
Confidence            579999999999999999998753 26766 789999888877664210            145678988877  79999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+
T Consensus        69 ~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~   97 (344)
T 3ezy_A           69 LVCSSTNTHSELVIACAK---AKKHVF-CEKPL   97 (344)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-EESCS
T ss_pred             EEcCCCcchHHHHHHHHh---cCCeEE-EECCC
Confidence            999999887776665543   345444 44544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.28  E-value=3.2e-06  Score=83.01  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=68.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH--hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~--~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|.+|.+++..|+..+...+|.++|+++++++....  .+. ..++     ...+.+..+..+++++||+||
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~-~~~~-----~~~~~v~~~~~~a~~~aDvVv   79 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHA-TPYS-----PTTVRVKAGEYSDCHDADLVV   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHH-GGGS-----SSCCEEEECCGGGGTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhh-hhhc-----CCCeEEEeCCHHHhCCCCEEE
Confidence            47999999999999999999988733489999999865543111  111 1111     112233334467799999999


Q ss_pred             EccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++++..                .++++.+.+.++ .++.+++..+|-+
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  126 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPV  126 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcH
Confidence            998531                245566666666 5677777787744

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.27  E-value=2.2e-06  Score=83.83  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      ||+|||+|.||.++|..|+.++. .+|.++|+++++++.....-......  ...+..+..++|. +++++||+||++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~--~~~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAE--LGVDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHH--HTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhh--cCCCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            79999999999999999998873 37999999987654321110000000  0012346666787 57999999999965


Q ss_pred             hhh----------------HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          209 VQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       209 ~~~----------------l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ...                ++++++++.++. ++..+|..+|.+
T Consensus        77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv  119 (308)
T 2d4a_B           77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPV  119 (308)
T ss_dssp             CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCch
Confidence            322                667777777764 677777788844

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.26  E-value=2.8e-06  Score=83.55  Aligned_cols=105  Identities=13%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ...|||+|||+|.+|.+++..|+..+...+|.++|+++++++.....  +.. .++      ..+++..+..+++++||+
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~------~~~~v~~~~~~a~~~aDv   75 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ-AFT------APKKIYSGEYSDCKDADL   75 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG-GGS------CCCEEEECCGGGGTTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH-Hhc------CCeEEEECCHHHhCCCCE
Confidence            34589999999999999999999887333899999998766532211  111 111      123333344677999999


Q ss_pred             EEEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ||++.+..                .++++.+.+..+ .++.+++..+|-++
T Consensus        76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~  125 (318)
T 1ez4_A           76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD  125 (318)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHH
Confidence            99997532                244555666665 46777777887543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.26  E-value=3.5e-06  Score=82.78  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=68.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      .++||+|||+|.||..++..|.+.. +.+|. +++++++.++.+.+....            ..+++|+++++.  ++|+
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~   70 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESA-QAEVRGIASRRLENAQKMAKELAI------------PVAYGSYEELCKDETIDI   70 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSS-SEEEEEEBCSSSHHHHHHHHHTTC------------CCCBSSHHHHHHCTTCSE
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHcCC------------CceeCCHHHHhcCCCCCE
Confidence            3579999999999999999998853 26766 789999888877765311            034568888876  7899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        71 V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~  101 (330)
T 3e9m_A           71 IYIPTYNQGHYSAAKLALS---QGKPVL-LEKPFT  101 (330)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCCEE-ECSSCC
T ss_pred             EEEcCCCHHHHHHHHHHHH---CCCeEE-EeCCCC
Confidence            9999999887776665543   344443 345443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.26  E-value=5.5e-06  Score=82.28  Aligned_cols=103  Identities=20%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      +.++||+|||+ |.+|+++|..|+..|...+|.++|+++++++.    +... .    ++    ..++..+++..+++++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~----~~----~~~i~~t~d~~~al~d   76 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-G----FE----GLNLTFTSDIKEALTD   76 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-C----CT----TCCCEEESCHHHHHTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-c----CC----CCceEEcCCHHHHhCC
Confidence            34689999998 99999999999988744589999999876543    3331 1    11    1256777888888999


Q ss_pred             CcEEEEccCh----------------hhHHHHHHHhhhcCCCCCe-EEEeccCCC
Q 014700          200 ADYCLHAMPV----------------QFSSSFLEGISDYVDPGLP-FISLSKGLE  237 (420)
Q Consensus       200 aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~i-VVs~snGi~  237 (420)
                      ||+||++.-.                ..++++.+.+..+- ++.+ ++.++|-++
T Consensus        77 ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd  130 (343)
T 3fi9_A           77 AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPAD  130 (343)
T ss_dssp             EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHH
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchH
Confidence            9999998521                12445556666665 5664 777787543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.25  E-value=2.5e-06  Score=80.74  Aligned_cols=127  Identities=15%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .||||+|+|+|.||..++..+.+.+  +++. +++++.+.     ..              ++.+++|+++++ ++|+||
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~--~eLva~~d~~~~~-----~~--------------gv~v~~dl~~l~-~~DVvI   59 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKG--HEIVGVIENTPKA-----TT--------------PYQQYQHIADVK-GADVAI   59 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-------C--------------CSCBCSCTTTCT-TCSEEE
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCC--CEEEEEEecCccc-----cC--------------CCceeCCHHHHh-CCCEEE
Confidence            3689999999999999999999987  4655 46776541     11              234556787766 999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      -++.+..+.+.++     ++.+..+|..+.|+..+..    +.+.+...    ...++..|++...+..           
T Consensus        60 Dft~p~a~~~~~~-----l~~g~~vVigTTG~s~e~~----~~l~~aa~----~~~v~~a~N~S~Gv~l-----------  115 (243)
T 3qy9_A           60 DFSNPNLLFPLLD-----EDFHLPLVVATTGEKEKLL----NKLDELSQ----NMPVFFSANMSYGVHA-----------  115 (243)
T ss_dssp             ECSCHHHHHHHHT-----SCCCCCEEECCCSSHHHHH----HHHHHHTT----TSEEEECSSCCHHHHH-----------
T ss_pred             EeCChHHHHHHHH-----HhcCCceEeCCCCCCHHHH----HHHHHHHh----cCCEEEECCccHHHHH-----------
Confidence            5555554444443     5667777777888865432    23334321    2467889998764311           


Q ss_pred             CHHHHHHHHHHHhc
Q 014700          285 DRKLANAVQQLLAS  298 (420)
Q Consensus       285 d~e~~~~l~~ll~~  298 (420)
                      --+.++++.++|..
T Consensus       116 ~~~~~~~aa~~l~~  129 (243)
T 3qy9_A          116 LTKILAAAVPLLDD  129 (243)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCC
Confidence            02455667777765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.24  E-value=4.1e-06  Score=70.89  Aligned_cols=96  Identities=11%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH---HHh-ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~---~ea-l~~aDi  202 (420)
                      +++|.|+|+|.+|..++..|.+.|  ++|++++++++..+.+.+.+... ...+         .++.   +++ +.++|+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d~   73 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHA-VIAN---------ATEENELLSLGIRNFEY   73 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHTTTTTCSEE-EECC---------TTCHHHHHTTTGGGCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhCCEE-EEeC---------CCCHHHHHhcCCCCCCE
Confidence            468999999999999999999998  89999999988766554432110 0000         0122   222 567999


Q ss_pred             EEEccChh-hHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       203 VIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      ||++++.. .....+......+.+. .++..+++
T Consensus        74 vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           74 VIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred             EEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence            99999964 3322233333334444 45555554

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.24  E-value=1e-05  Score=79.83  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=69.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--CcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aDi  202 (420)
                      ++||+|||+|.||..++..|. +.. +.+|. +++++++.++.+.+...           ....+.+|+++++.+  +|+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~-~~~l~av~d~~~~~~~~~~~~~g-----------~~~~~~~~~~~ll~~~~~D~   69 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLS-GAEIVAVTDVNQEAAQKVVEQYQ-----------LNATVYPNDDSLLADENVDA   69 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCS-SEEEEEEECSSHHHHHHHHHHTT-----------CCCEEESSHHHHHHCTTCCE
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC-----------CCCeeeCCHHHHhcCCCCCE
Confidence            469999999999999999998 432 26766 78999998888776421           013567899998765  899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        70 V~i~tp~~~h~~~~~~al~---~Gk~vl-~EKP~a  100 (344)
T 3mz0_A           70 VLVTSWGPAHESSVLKAIK---AQKYVF-CEKPLA  100 (344)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEECCCchhHHHHHHHHHH---CCCcEE-EcCCCC
Confidence            9999999887777665543   455444 455444

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.22  E-value=3.2e-06  Score=83.03  Aligned_cols=102  Identities=22%  Similarity=0.297  Sum_probs=67.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH----HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~----~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.||.++|..|+..|...+|.++|+++++++    .+.....   +.   ..+..+..+++ .+++++||+|
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---~~---~~~~~v~~~~~-~~a~~~aDvV   73 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSP---IH---GFDTRVTGTND-YGPTEDSDVC   73 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHH---HH---TCCCEEEEESS-SGGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccc---cc---CCCcEEEECCC-HHHhCCCCEE
Confidence            799999999999999999999873239999999887654    2222100   00   00112343444 4668999999


Q ss_pred             EEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++....                .++++.+.+..+ .++.+++..+|-++
T Consensus        74 ii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd  122 (314)
T 3nep_X           74 IITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLD  122 (314)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHH
T ss_pred             EECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchh
Confidence            9987531                134555566665 46788888888543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.21  E-value=8.5e-06  Score=80.36  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=75.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..|||+|||+|.||.++|..|+..|...+|.++|+++++++-....  +... ++      .++.++++..+++++||+|
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~------~~~~i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP-FT------SPKKIYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GS------CCCEEEECCGGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh-hc------CCcEEEECcHHHhcCCCEE
Confidence            4689999999999999999999987323899999998766533221  1111 11      1344444445678999999


Q ss_pred             EEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       204 IlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      |++....                .++++.+.+..+- ++.+++..+|-++     .+++.+.+..+
T Consensus        81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvd-----i~t~~~~k~~g  140 (326)
T 3vku_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVD-----ILTYATWKLSG  140 (326)
T ss_dssp             EECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchH-----HHHHHHHHhcC
Confidence            9986421                2455666666654 6788888888543     34445554433

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.20  E-value=4.7e-06  Score=82.37  Aligned_cols=118  Identities=12%  Similarity=0.141  Sum_probs=78.1

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ....+||+|||+|.||.++|..|+..|...+|.++|+++++++.....  +...     +.....+..++|.+ ++++||
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~-----~~~~~~i~~~~d~~-~~~~aD   89 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL-----FLKTPKIVSSKDYS-VTANSK   89 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG-----GCSCCEEEECSSGG-GGTTEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh-----ccCCCeEEEcCCHH-HhCCCC
Confidence            445789999999999999999999987334899999998765442211  1110     11122455567776 589999


Q ss_pred             EEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          202 YCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       202 iVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +||++.-.                ..++++.+.+..+ .++.+++.++|.++     .+...+.+..+
T Consensus        90 iVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd-----i~t~~~~k~sg  151 (331)
T 4aj2_A           90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVD-----ILTYVAWKISG  151 (331)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHH-----HHHHHHHHHhC
Confidence            99998531                1255666677776 57888888888543     33444554433

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.20  E-value=5.2e-06  Score=81.28  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|.+|.+++..|+..+...+|.++|+++++++.....  +.. .++    .+..+.. ++ .+++++||+||+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~-~~~----~~~~v~~-~~-~~a~~~aD~Vii   73 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFA----HPVWVWA-GS-YGDLEGARAVVL   73 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG-GGS----CCCEEEE-CC-GGGGTTEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH-hhc----CCeEEEE-CC-HHHhCCCCEEEE
Confidence            69999999999999999999876445899999998766532221  111 111    1223343 34 567999999999


Q ss_pred             ccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.+..                .++++.+.+.++ .++.+++..+|.+
T Consensus        74 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv  119 (310)
T 2xxj_A           74 AAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV  119 (310)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred             CCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence            87521                245555666666 4677777788854

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.19  E-value=1.3e-05  Score=79.51  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             CCCeEEEEcccHHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~-alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||. .++..|.+.. +.+|. +++++++.++.+.+..             ++...+|+++++.  +.|
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~ll~~~~~D   91 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEP-LTEVTAIASRRWDRAKRFTERF-------------GGEPVEGYPALLERDDVD   91 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCT-TEEEEEEEESSHHHHHHHHHHH-------------CSEEEESHHHHHTCTTCS
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCC-CeEEEEEEcCCHHHHHHHHHHc-------------CCCCcCCHHHHhcCCCCC
Confidence            457999999999998 7899998863 26776 7899998888776642             2334478888876  589


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        92 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a  123 (350)
T 3rc1_A           92 AVYVPLPAVLHAEWIDRALR---AGKHVL-AEKPLT  123 (350)
T ss_dssp             EEEECCCGGGHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             EEEECCCcHHHHHHHHHHHH---CCCcEE-EeCCCC
Confidence            99999999887777665543   355444 445444

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.17  E-value=7.9e-06  Score=80.12  Aligned_cols=101  Identities=16%  Similarity=0.198  Sum_probs=69.2

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE---eCCHHHhccCCcEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a---~td~~eal~~aDiV  203 (420)
                      |||+|||+ |.+|.+++..|+..|..++|.++|+++.......-.+        ...+..+..   ++|+++++++||+|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~--------~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH--------IETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT--------SSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc--------cCcCceEEEecCCCCHHHHhCCCCEE
Confidence            69999998 9999999999998764468999999872221111111        111224555   25788889999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++...                ..++++++.+.++. ++..+|..+|-++
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~  121 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVN  121 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHH
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcc
Confidence            998632                23566667776665 5667777887543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.17  E-value=1.6e-05  Score=77.26  Aligned_cols=115  Identities=11%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH----HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~----~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.+|.++|..|+.++.-.++.++|.+++.++    .+.....   +   ......+...+|.+ ++++||+|
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~---~---~~~~~~i~~~~d~~-~~~~aDvV   73 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---G---IDKYPKIVGGADYS-LLKGSEII   73 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG---G---GTCCCEEEEESCGG-GGTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc---c---CCCCCeEecCCCHH-HhCCCCEE
Confidence            799999999999999999988875458999999885432    2322100   0   11122355566775 48999999


Q ss_pred             EEccC-----h-----------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC
Q 014700          204 LHAMP-----V-----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP  255 (420)
Q Consensus       204 IlaVp-----~-----------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~  255 (420)
                      |++--     .           ..++++.+++.++- ++.+++.++|.++     .+..++.+..|.+
T Consensus        74 vitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd-----~~t~i~~k~sg~p  135 (294)
T 2x0j_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMD-----VMTYIMWKESGKP  135 (294)
T ss_dssp             EECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHH-----HHHHHHHHHSSCC
T ss_pred             EEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcch-----hhHHhhHHHcCCC
Confidence            99742     1           12455666676654 5778888888544     3344555555543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.17  E-value=4.1e-06  Score=85.36  Aligned_cols=92  Identities=11%  Similarity=-0.036  Sum_probs=70.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||+|.+|..+|..|...|  .+|+++++++.........|.              . ..+++++++.+|+|++
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~~G~--------------~-~~sL~eal~~ADVVil  272 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAMEGY--------------Q-VLLVEDVVEEAHIFVT  272 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------E-ECCHHHHTTTCSEEEE
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHHhCC--------------e-ecCHHHHHhhCCEEEE
Confidence            4689999999999999999999988  899999999866544444331              2 2378999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.....+-  -.+....++++.+||++.+|-
T Consensus       273 t~gt~~iI--~~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          273 TTGNDDII--TSEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             CSSCSCSB--CTTTGGGCCTTEEEEECSSSG
T ss_pred             CCCCcCcc--CHHHHhhcCCCcEEEEeCCCC
Confidence            77654321  124456678999999998874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.16  E-value=6.6e-06  Score=81.16  Aligned_cols=103  Identities=12%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+|.+|.+++..|+..+...+|.++|+++++++.....  +.. .++      .++++..+..+++++||+||
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~~~------~~~~i~~~~~~a~~~aDvVi   81 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL-PFT------SPKKIYSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS------CCCEEEECCGGGGGGCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH-Hhc------CCeEEEECCHHHhCCCCEEE
Confidence            579999999999999999999887333899999998766542221  111 111      12333334567799999999


Q ss_pred             EccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       205 laVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++.+..                .++++.+.+..+ .++.+++..+|.++
T Consensus        82 i~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~  129 (326)
T 2zqz_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANPVD  129 (326)
T ss_dssp             ECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSSHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCcHH
Confidence            987532                244455566665 46777777887543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.16  E-value=1.4e-05  Score=69.44  Aligned_cols=102  Identities=8%  Similarity=0.051  Sum_probs=64.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHHhcC-CCCCC-CCCCCCCceEEeCCHHHh-ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHC-NCRYF-PEQKLPENVIATTDAKTA-LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~-~~~~~~i~~~g~-~~~~l-~~~~l~~~i~a~td~~ea-l~~aDi  202 (420)
                      .++|.|+|+|.+|..++..|.+.|  ++|++++++ ++.++.+.+... ....+ .+..-      ...++++ +.++|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~------~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSND------SSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS------HHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC------HHHHHHcChhhCCE
Confidence            468999999999999999999988  999999997 565555553210 01100 00000      0113333 778999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ||++++.+.....+......+.+...++...++.
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            9999998765555544444443444555555543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.14  E-value=5.5e-06  Score=85.62  Aligned_cols=93  Identities=12%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||.|.||..+|..|...|  .+|++|++++.........|              +.. .+++++++.+|+|++
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G--~~Viv~d~~~~~~~~a~~~g--------------~~~-~~l~ell~~aDiVi~  318 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPICAIQAVMEG--------------FNV-VTLDEIVDKGDFFIT  318 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHTTT--------------CEE-CCHHHHTTTCSEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCc--CEEEEEeCChhhHHHHHHcC--------------CEe-cCHHHHHhcCCEEEE
Confidence            4689999999999999999999888  89999999987543333322              122 378899999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++....+-  -.+....++++.+||++..|-.
T Consensus       319 ~~~t~~lI--~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          319 CTGNVDVI--KLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             CCSSSSSB--CHHHHTTCCTTCEEEECSSTTT
T ss_pred             CCChhhhc--CHHHHhhcCCCcEEEEeCCCCc
Confidence            97543321  1234456889999999988733

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.13  E-value=1.4e-05  Score=78.60  Aligned_cols=94  Identities=18%  Similarity=0.220  Sum_probs=67.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-hcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCce-EEeCCHHHhcc--CC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVA-NKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENV-IATTDAKTALL--GA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La-~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i-~a~td~~eal~--~a  200 (420)
                      .++||+|||+|.||..++..|. +.. +++| .+++++++..+.+.+..             ++ .+.+|+++++.  ++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~-~~~~vav~d~~~~~~~~~a~~~-------------g~~~~~~~~~~~l~~~~~   72 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQ-GVKLVAACALDSNQLEWAKNEL-------------GVETTYTNYKDMIDTENI   72 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCS-SEEEEEEECSCHHHHHHHHHTT-------------CCSEEESCHHHHHTTSCC
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHh-------------CCCcccCCHHHHhcCCCC
Confidence            4579999999999999999998 542 2675 57899998887776531             11 45678888876  69


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        73 D~V~i~tp~~~h~~~~~~al~---~G~~v~-~eKp~~  105 (346)
T 3cea_A           73 DAIFIVAPTPFHPEMTIYAMN---AGLNVF-CEKPLG  105 (346)
T ss_dssp             SEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCCC
T ss_pred             CEEEEeCChHhHHHHHHHHHH---CCCEEE-EcCCCC
Confidence            999999998877666655433   455554 344343

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.13  E-value=5.4e-06  Score=85.97  Aligned_cols=93  Identities=14%  Similarity=0.018  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|+|||.|.||..+|..|...|  .+|++|+|++.........|              +.. .+++++++.+|+|++
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~G--~~V~v~d~~~~~~~~a~~~G--------------~~~-~~l~ell~~aDiVi~  338 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGLG--ATVWVTEIDPICALQAAMEG--------------YRV-VTMEYAADKADIFVT  338 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSCHHHHHHHHTTT--------------CEE-CCHHHHTTTCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCChHhHHHHHHcC--------------CEe-CCHHHHHhcCCEEEE
Confidence            4689999999999999999999877  89999999987542222222              122 378899999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++....+-  -++....++++.+||++..|-.
T Consensus       339 ~~~t~~lI--~~~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          339 ATGNYHVI--NHDHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             CSSSSCSB--CHHHHHHCCTTEEEEECSSSSC
T ss_pred             CCCccccc--CHHHHhhCCCCcEEEEcCCCcc
Confidence            98543321  1234456788999999988743

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.12  E-value=2e-05  Score=78.26  Aligned_cols=95  Identities=13%  Similarity=0.058  Sum_probs=68.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La-~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ++||+|||+|.||..++..|. +.. +.+|. +++++++.++.+.+....           .....+|+++++.  +.|+
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g~-----------~~~~~~~~~~ll~~~~~D~   90 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAALDKYAI-----------EAKDYNDYHDLINDKDVEV   90 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCT-TEEEEEEECSSTTHHHHHHHHHTC-----------CCEEESSHHHHHHCTTCCE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhCC-----------CCeeeCCHHHHhcCCCCCE
Confidence            469999999999999999998 432 26766 789999888877664210           1356778998876  5899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        91 V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKPla  121 (357)
T 3ec7_A           91 VIITASNEAHADVAVAALN---ANKYVF-CEKPLA  121 (357)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCCEE-eecCcc
Confidence            9999999887776665544   355444 445544

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.12  E-value=2.1e-05  Score=78.07  Aligned_cols=100  Identities=11%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CC
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~a  200 (420)
                      |++++||+|||+|.||..++..|.+.. +.++ .+++++++..+.+.+...         ++......+|+++++.  ++
T Consensus         3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~-~~~lv~v~d~~~~~~~~~a~~~~---------~~~~~~~~~~~~~ll~~~~~   72 (362)
T 1ydw_A            3 TETQIRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATANN---------YPESTKIHGSYESLLEDPEI   72 (362)
T ss_dssp             ---CEEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHTT---------CCTTCEEESSHHHHHHCTTC
T ss_pred             CCCceEEEEECchHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC---------CCCCCeeeCCHHHHhcCCCC
Confidence            455689999999999999999998753 2565 478999988877765421         1112356678888875  58


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++|+|.....+++....   +.++.|++ -|.+.
T Consensus        73 D~V~i~tp~~~h~~~~~~al---~aGk~V~~-EKP~a  105 (362)
T 1ydw_A           73 DALYVPLPTSLHVEWAIKAA---EKGKHILL-EKPVA  105 (362)
T ss_dssp             CEEEECCCGGGHHHHHHHHH---TTTCEEEE-CSSCS
T ss_pred             CEEEEcCChHHHHHHHHHHH---HCCCeEEE-ecCCc
Confidence            99999999988777666543   35665553 55443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.12  E-value=2.2e-05  Score=76.65  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=65.2

Q ss_pred             CeEEEEcccHHHHHH-HHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          128 NKVVVLGGGSFGTAM-AAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~al-A~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      |||+|||+|.||..+ +..|.+.+  ++|. +++++++..+.+.+.....            ...+|+++++.  ++|+|
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~--~~~vav~d~~~~~~~~~~~~~g~~------------~~~~~~~~~l~~~~~D~V   66 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATG--GEVVSMMSTSAERGAAYATENGIG------------KSVTSVEELVGDPDVDAV   66 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTT--CEEEEEECSCHHHHHHHHHHTTCS------------CCBSCHHHHHTCTTCCEE
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCC--CeEEEEECCCHHHHHHHHHHcCCC------------cccCCHHHHhcCCCCCEE
Confidence            589999999999998 77887754  7765 7899998887776542100            23457888776  59999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+
T Consensus        67 ~i~tp~~~h~~~~~~al~---~Gk~v~-~ekP~   95 (332)
T 2glx_A           67 YVSTTNELHREQTLAAIR---AGKHVL-CEKPL   95 (332)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-ECSSS
T ss_pred             EEeCChhHhHHHHHHHHH---CCCeEE-EeCCC
Confidence            999998887776665433   455554 34444

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.09  E-value=8e-06  Score=79.53  Aligned_cols=91  Identities=12%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      .++||+|||+|.||..++..|.+.. +.++. +++++++.++.+.+.               +...+++++++.  ++|+
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~-~~~~v~v~d~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~D~   72 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLP-GAALVRLASSNPDNLALVPPG---------------CVIESDWRSVVSAPEVEA   72 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCT-TEEEEEEEESCHHHHTTCCTT---------------CEEESSTHHHHTCTTCCE
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHhh---------------CcccCCHHHHhhCCCCCE
Confidence            4579999999999999999998863 26654 889998764432221               245678888875  7999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+
T Consensus        73 V~i~tp~~~h~~~~~~al~---~Gk~v~-~eKP~  102 (315)
T 3c1a_A           73 VIIATPPATHAEITLAAIA---SGKAVL-VEKPL  102 (315)
T ss_dssp             EEEESCGGGHHHHHHHHHH---TTCEEE-EESSS
T ss_pred             EEEeCChHHHHHHHHHHHH---CCCcEE-EcCCC
Confidence            9999999887777765433   455444 34544

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.08  E-value=1.9e-06  Score=75.12  Aligned_cols=84  Identities=6%  Similarity=-0.029  Sum_probs=62.2

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|+|||+    |.||..++..|.+.|  ++|+.++++.. .+.+                .++.+..+++++...+|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G--~~v~~vnp~~~-g~~i----------------~G~~~~~sl~el~~~~Dl   73 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQG--YHVIPVSPKVA-GKTL----------------LGQQGYATLADVPEKVDM   73 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHT--CCEEEECSSST-TSEE----------------TTEECCSSTTTCSSCCSE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCC--CEEEEeCCccc-cccc----------------CCeeccCCHHHcCCCCCE
Confidence            578999999    899999999999998  78766665431 0000                134555677776678999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEE
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      +++++|+..+.++++++... ..+.+++
T Consensus        74 vii~vp~~~v~~v~~~~~~~-g~~~i~i  100 (145)
T 2duw_A           74 VDVFRNSEAAWGVAQEAIAI-GAKTLWL  100 (145)
T ss_dssp             EECCSCSTHHHHHHHHHHHH-TCCEEEC
T ss_pred             EEEEeCHHHHHHHHHHHHHc-CCCEEEE
Confidence            99999999999999887663 3344444

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.07  E-value=1.5e-05  Score=77.64  Aligned_cols=93  Identities=12%  Similarity=0.099  Sum_probs=63.9

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .++||+|||+|.||.. ++..|.+.. +.+|. +++++++..+.+.+...             +..+++.++...++|+|
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~g-------------~~~~~~~~~l~~~~D~V   69 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESWR-------------IPYADSLSSLAASCDAV   69 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHHT-------------CCBCSSHHHHHTTCSEE
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcC-------------CCccCcHHHhhcCCCEE
Confidence            3579999999999996 888887642 26766 88999887777665421             11345676654679999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+
T Consensus        70 ~i~tp~~~h~~~~~~al~---~G~~v~-~eKP~   98 (319)
T 1tlt_A           70 FVHSSTASHFDVVSTLLN---AGVHVC-VDKPL   98 (319)
T ss_dssp             EECSCTTHHHHHHHHHHH---TTCEEE-EESSS
T ss_pred             EEeCCchhHHHHHHHHHH---cCCeEE-EeCCC
Confidence            999998877666655433   455444 34433

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.06  E-value=8.1e-06  Score=80.31  Aligned_cols=93  Identities=11%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +.++|+|||+|.||..++..|.+.....+|.+|+|++++++++.+.... .   +    ..+. .+++++++ ++|+|+.
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-~---~----~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-R---G----ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-T---T----CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-c---C----ceEE-ECCHHHHh-CCCEEEE
Confidence            4579999999999999999998732127899999999998888764210 0   0    1244 67888989 9999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |+|+..  .++.  ...+++++.|+.+
T Consensus       194 aTp~~~--pv~~--~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPSRK--PVVK--AEWVEEGTHINAI  216 (322)
T ss_dssp             CCCCSS--CCBC--GGGCCTTCEEEEC
T ss_pred             eeCCCC--ceec--HHHcCCCeEEEEC
Confidence            999743  1221  2467788888776

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.05  E-value=9.3e-06  Score=79.63  Aligned_cols=94  Identities=14%  Similarity=0.032  Sum_probs=65.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCce-EEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENV-IATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i-~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||..++..|.+.+ +.+|. +++|++++++.+.+..             ++ .+++|+++++.  ++|
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~-~~~~~av~d~~~~~~~~~a~~~-------------~~~~~~~~~~~ll~~~~~D   69 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAG-NGEVVAVSSRTLESAQAFANKY-------------HLPKAYDKLEDMLADESID   69 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHC-SEEEEEEECSCSSTTCC---CC-------------CCSCEESCHHHHHTCTTCC
T ss_pred             CceEEEEEechHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHHc-------------CCCcccCCHHHHhcCCCCC
Confidence            3579999999999999999998765 25555 7789887655544321             11 35678999887  789


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        70 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a  101 (329)
T 3evn_A           70 VIYVATINQDHYKVAKAALL---AGKHVL-VEKPFT  101 (329)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEECCCcHHHHHHHHHHHH---CCCeEE-EccCCc
Confidence            99999998887776655443   355544 455444

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.03  E-value=2.3e-05  Score=76.50  Aligned_cols=93  Identities=19%  Similarity=0.296  Sum_probs=62.9

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEE
Q 014700          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~-alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVI  204 (420)
                      ++||+|||+|.||. .++..|.+.. +.+|.+++++++..+.+.+.....            ....+..+.+ .++|+|+
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~-~~~l~v~d~~~~~~~~~a~~~g~~------------~~~~~~~~~l~~~~D~V~   68 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS------------ATCTDYRDVLQYGVDAVM   68 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC------------CCCSSTTGGGGGCCSEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHcCCC------------ccccCHHHHhhcCCCEEE
Confidence            47999999999998 5898887652 267779999999888776642110            0012333445 6899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+|.....+++.....   .++.|+ +-|.+
T Consensus        69 i~tp~~~h~~~~~~al~---~Gk~V~-~EKP~   96 (323)
T 1xea_A           69 IHAATDVHSTLAAFFLH---LGIPTF-VDKPL   96 (323)
T ss_dssp             ECSCGGGHHHHHHHHHH---TTCCEE-EESCS
T ss_pred             EECCchhHHHHHHHHHH---CCCeEE-EeCCC
Confidence            99998887777655433   355444 33433

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.03  E-value=3.5e-05  Score=76.60  Aligned_cols=92  Identities=15%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ++||+|||+|.||...+..|.+.. +.+|. +++++++..+...+.+              +.+.+|+++++.  +.|+|
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~a~~~g--------------~~~~~~~~~ll~~~~~D~V   69 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAAD-NLEVHGVFDILAEKREAAAQKG--------------LKIYESYEAVLADEKVDAV   69 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTST-TEEEEEEECSSHHHHHHHHTTT--------------CCBCSCHHHHHHCTTCCEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHhcC--------------CceeCCHHHHhcCCCCCEE
Confidence            468999999999999999998763 36776 6799988766443322              234568888876  78999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        70 ~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~a   99 (359)
T 3e18_A           70 LIATPNDSHKELAISALE---AGKHVV-CEKPVT   99 (359)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEcCCcHHHHHHHHHHHH---CCCCEE-eeCCCc
Confidence            999999887776655543   455554 455444

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.02  E-value=6.5e-06  Score=82.11  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..|||.|||+|.+|..++..|++.   ++|++++++.+.++.+++...      .+.+.  +.-..+++++++++|+||.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~---~~v~~~~~~~~~~~~~~~~~~------~~~~d--~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE---FDVYIGDVNNENLEKVKEFAT------PLKVD--ASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHTTTSE------EEECC--TTCHHHHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC---CCeEEEEcCHHHHHHHhccCC------cEEEe--cCCHHHHHHHHhCCCEEEE
Confidence            358999999999999999999764   799999999988877654311      00000  0001134566789999999


Q ss_pred             ccChhhHHHHHHHh
Q 014700          206 AMPVQFSSSFLEGI  219 (420)
Q Consensus       206 aVp~~~l~~vl~~i  219 (420)
                      |+|......+++..
T Consensus        84 ~~p~~~~~~v~~~~   97 (365)
T 3abi_A           84 ALPGFLGFKSIKAA   97 (365)
T ss_dssp             CCCGGGHHHHHHHH
T ss_pred             ecCCcccchHHHHH
Confidence            99987666665543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.02  E-value=5.2e-06  Score=81.46  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +.++|+|||+|.||..++..|.......+|.+|+|+  +.+++.+.-.. . + +    ..+.+. +++++++++|+||.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~-~-~-g----~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGR-R-C-G----VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHH-H-H-T----SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHH-h-c-C----CeEEEe-CHHHHHhhCCEEEE
Confidence            457999999999999999999874212689999998  33333321000 0 0 0    123455 89999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|+..  .++.  .+.++++++|+.+.
T Consensus       190 aT~s~~--pvl~--~~~l~~G~~V~~vG  213 (313)
T 3hdj_A          190 ATRSTT--PLFA--GQALRAGAFVGAIG  213 (313)
T ss_dssp             CCCCSS--CSSC--GGGCCTTCEEEECC
T ss_pred             ccCCCC--cccC--HHHcCCCcEEEECC
Confidence            999752  2222  35688899888774

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.02  E-value=6.1e-06  Score=82.90  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC--CCCCCCce---------EEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP--EQKLPENV---------IATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~--~~~l~~~i---------~a~td~~e  195 (420)
                      ..||+|||+|.+|..+++.+...|  .+|+++||++++.+.+.+.|.....++  ........         ....++++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            469999999999999999999988  899999999988887776543211110  00000000         00125677


Q ss_pred             hccCCcEEEEcc--ChhhHHH-HHHHhhhcCCCCCeEEEec
Q 014700          196 ALLGADYCLHAM--PVQFSSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       196 al~~aDiVIlaV--p~~~l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      +++++|+||.++  |...... +-++....++++.+||+++
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence            889999999986  4321111 1244555677899999885

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.01  E-value=2.5e-05  Score=79.29  Aligned_cols=93  Identities=18%  Similarity=0.270  Sum_probs=74.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH------HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~------~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .+||+|||.|+-|.+-|..|.++|  .+|++--|...      ..+...+.|.              .+. +.+|+++.+
T Consensus        37 gK~IaVIGyGsQG~AqAlNLRDSG--v~V~Vglr~~s~~e~~~S~~~A~~~Gf--------------~v~-~~~eA~~~A   99 (491)
T 3ulk_A           37 GKKVVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KVG-TYEELIPQA   99 (491)
T ss_dssp             TSEEEEESCSHHHHHHHHHHHHTT--CEEEEEECHHHHHTTCHHHHHHHHTTC--------------EEE-EHHHHGGGC
T ss_pred             CCEEEEeCCChHhHHHHhHHHhcC--CcEEEEeCCCCcccccchHHHHHHCCC--------------Eec-CHHHHHHhC
Confidence            489999999999999999999999  89998777432      2234444442              332 578999999


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++-+|+..-.++.+.|.|+++++..+.. +-|+.
T Consensus       100 DvV~~L~PD~~q~~vy~~I~p~lk~G~~L~f-aHGFn  135 (491)
T 3ulk_A          100 DLVINLTPDKQHSDVVRTVQPLMKDGAALGY-SHGFN  135 (491)
T ss_dssp             SEEEECSCGGGHHHHHHHHGGGSCTTCEEEE-SSCHH
T ss_pred             CEEEEeCChhhHHHHHHHHHhhCCCCCEEEe-cCccc
Confidence            9999999999999999999999999988764 45653

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.00  E-value=2.2e-05  Score=77.02  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-CCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ++||+|||+|.||..++..|.+... +++| .+++|+++.++.+.+....         +   .+.+|.++++.  +.|+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI---------P---KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC---------S---CEESSHHHHHHCTTCCE
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCCE
Confidence            5799999999999999999976531 1344 4789999888887765311         0   35678888876  6899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        70 V~i~tp~~~H~~~~~~al~---~GkhVl-~EKP~a  100 (334)
T 3ohs_X           70 AYVGTQHPQHKAAVMLCLA---AGKAVL-CEKPMG  100 (334)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSS
T ss_pred             EEECCCcHHHHHHHHHHHh---cCCEEE-EECCCC
Confidence            9999998887776655543   355544 455554

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.99  E-value=3.4e-05  Score=75.97  Aligned_cols=97  Identities=13%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             cCCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CC
Q 014700          125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~a  200 (420)
                      ..|+||||||+|.||.. ++..|.+.. +.+|. ++|+++++++++.+....            .++++|.++++.  +.
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~-~~~lvav~d~~~~~a~~~a~~~g~------------~~~y~d~~ell~~~~i   87 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAE-NCVVTAIASRDLTRAREMADRFSV------------PHAFGSYEEMLASDVI   87 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCS-SEEEEEEECSSHHHHHHHHHHHTC------------SEEESSHHHHHHCSSC
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcCC------------CeeeCCHHHHhcCCCC
Confidence            45679999999999975 566676653 26766 689999988888765311            146779999874  58


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        88 DaV~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  121 (350)
T 4had_A           88 DAVYIPLPTSQHIEWSIKAAD---AGKHVV-CEKPLAL  121 (350)
T ss_dssp             SEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCCCS
T ss_pred             CEEEEeCCCchhHHHHHHHHh---cCCEEE-EeCCccc
Confidence            999999998877776655544   344443 4565543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.98  E-value=2.6e-05  Score=76.78  Aligned_cols=115  Identities=18%  Similarity=0.197  Sum_probs=73.6

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEE---eCCHHHhccCC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a---~td~~eal~~a  200 (420)
                      +|||+|+| +|.+|.+++..|+..|..++|.++|++++..  ..+...  .        .+..+..   ++|++++++++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~--~--------~~~~v~~~~~t~d~~~al~ga   77 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHM--D--------TGAVVRGFLGQQQLEAALTGM   77 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTS--C--------SSCEEEEEESHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcc--c--------ccceEEEEeCCCCHHHHcCCC
Confidence            57999999 7999999999998875336899999876522  222221  0        1113343   44677889999


Q ss_pred             cEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          201 DYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       201 DiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      |+||++...                ..++++++.+..+- ++.+|+..+|.++.. ...+++.+.+..+
T Consensus        78 DvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~-~~~~t~~~~~~~~  144 (326)
T 1smk_A           78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNST-VPIAAEVFKKAGT  144 (326)
T ss_dssp             SEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHH-HHHHHHHHHHHTC
T ss_pred             CEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHH-HHHHHHHHHHccC
Confidence            999998742                12555666666554 566777777755421 1224455555433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.98  E-value=1.3e-05  Score=83.17  Aligned_cols=92  Identities=14%  Similarity=0.029  Sum_probs=70.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ...++|+|||+|.||..+|..|...|  .+|++++++++..+...+.|.              .. .+++++++++|+||
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~Ga--------------~~-~~l~e~l~~aDvVi  334 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMMEGF--------------DV-VTVEEAIGDADIVV  334 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHGGGCSEEE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------EE-ecHHHHHhCCCEEE
Confidence            34689999999999999999999888  899999999987666555442              11 25778888999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      .+++...+-.  .+....++++.+|+++..+
T Consensus       335 ~atgt~~~i~--~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          335 TATGNKDIIM--LEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             ECSSSSCSBC--HHHHHHSCTTCEEEECSSS
T ss_pred             ECCCCHHHHH--HHHHHhcCCCcEEEEeCCC
Confidence            9998655211  1344557788999887654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.97  E-value=1.9e-05  Score=75.88  Aligned_cols=148  Identities=14%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .||||+|+| .|.||..++..+.+.. ++++.. ++|+....     .|.....+-+  +..++.+++|+++++.++|+|
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~-~~eLv~~~d~~~~~~-----~G~d~gel~g--~~~gv~v~~dl~~ll~~~DVV   77 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAP-DATLVGALDRTGSPQ-----LGQDAGAFLG--KQTGVALTDDIERVCAEADYL   77 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCT-TEEEEEEBCCTTCTT-----TTSBTTTTTT--CCCSCBCBCCHHHHHHHCSEE
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEEecCccc-----ccccHHHHhC--CCCCceecCCHHHHhcCCCEE
Confidence            468999999 8999999999998764 366664 57764210     1111111111  122566778999988899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |-++++....+.+.....   .+..+|..+.|+..+..    +.+.+...    ...++..|++...+..          
T Consensus        78 IDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~----~~L~~aa~----~~~vv~a~N~s~Gv~l----------  136 (272)
T 4f3y_A           78 IDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQK----AQLRAAGE----KIALVFSANMSVGVNV----------  136 (272)
T ss_dssp             EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH----HHHHHHTT----TSEEEECSCCCHHHHH----------
T ss_pred             EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH----HHHHHHhc----cCCEEEECCCCHHHHH----------
Confidence            999998877766665544   45667777778865422    33444322    2457888988754211          


Q ss_pred             CCHHHHHHHHHHHhcCCceEE
Q 014700          284 KDRKLANAVQQLLASKHLRIS  304 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~  304 (420)
                       -.+.++++.+.|.. ++.+.
T Consensus       137 -~~~~~~~aa~~l~~-~~die  155 (272)
T 4f3y_A          137 -TMKLLEFAAKQFAQ-GYDIE  155 (272)
T ss_dssp             -HHHHHHHHHHHTSS-SCEEE
T ss_pred             -HHHHHHHHHHhcCc-CCCEE
Confidence             02445666777752 34443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.93  E-value=1.3e-05  Score=81.60  Aligned_cols=91  Identities=14%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      -..++|+|+|+|.+|..+|..|...|  .+|+++++++.........|.              . ..+++++++.+|+|+
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~~G~--------------~-v~~Leeal~~ADIVi  280 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACMDGF--------------R-LVKLNEVIRQVDIVI  280 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------E-ECCHHHHTTTCSEEE
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHHcCC--------------E-eccHHHHHhcCCEEE
Confidence            34689999999999999999999888  899999999865443333331              1 236889999999999


Q ss_pred             EccChhhHHHHH-HHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl-~~i~~~l~~~~iVVs~snG  235 (420)
                      +|.-...   ++ .+....++++.+|+++..|
T Consensus       281 ~atgt~~---lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          281 TCTGNKN---VVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             ECSSCSC---SBCHHHHHHSCTTEEEEECSST
T ss_pred             ECCCCcc---cCCHHHHHhcCCCcEEEEecCC
Confidence            9743222   22 1334556788999999876

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.92  E-value=4.3e-05  Score=74.40  Aligned_cols=86  Identities=14%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ++||+|||+|.||..++..|.+.. +.+|. +++++++.++.   .|.        .    ....+++.+. .++|+|++
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~-~~elvav~d~~~~~~~~---~g~--------~----~~~~~~l~~~-~~~DvVii   71 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAP-DFEIAGIVRRNPAEVPF---ELQ--------P----FRVVSDIEQL-ESVDVALV   71 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECC----------CCT--------T----SCEESSGGGS-SSCCEEEE
T ss_pred             CCEEEEECChHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHH---cCC--------C----cCCHHHHHhC-CCCCEEEE
Confidence            469999999999999999998753 37777 68898875443   221        0    1223455553 78999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |+|.....+.+....   +.+..|++.
T Consensus        72 atp~~~h~~~~~~al---~aG~~Vi~e   95 (304)
T 3bio_A           72 CSPSREVERTALEIL---KKGICTADS   95 (304)
T ss_dssp             CSCHHHHHHHHHHHH---TTTCEEEEC
T ss_pred             CCCchhhHHHHHHHH---HcCCeEEEC
Confidence            999887766665544   346666654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.92  E-value=1.2e-05  Score=81.38  Aligned_cols=105  Identities=14%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCC-----C----CCCceE------EeC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ-----K----LPENVI------ATT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~-----~----l~~~i~------a~t  191 (420)
                      ..||+|||+|.+|..+++.+...|  .+|+++|+++++.+.+.+.|.....++..     .    +...+.      -..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            469999999999999999999988  89999999998877777654321100000     0    000000      012


Q ss_pred             CHHHhccCCcEEEEcc--ChhhHHH-HHHHhhhcCCCCCeEEEec
Q 014700          192 DAKTALLGADYCLHAM--PVQFSSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       192 d~~eal~~aDiVIlaV--p~~~l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      +++++++++|+||.++  |...-.. +-++....++++.+||+++
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence            4677889999999986  4211111 1245556678999999986

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.92  E-value=4.2e-05  Score=75.33  Aligned_cols=102  Identities=19%  Similarity=0.167  Sum_probs=70.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCC-----CeEEEEeCC----HHHHHH----HHHhcCCCCCCCCCCCCCceEEeCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRD----PAVCQS----INEKHCNCRYFPEQKLPENVIATTD  192 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~-----~~V~l~~r~----~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td  192 (420)
                      .|||+|+|+ |.+|++++..|+..|..     .+|.++|++    +++++.    +...  .      ..+...+..+++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~--~------~~~~~~i~~~~~   76 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC--A------FPLLAGMTAHAD   76 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT--T------CTTEEEEEEESS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh--c------ccccCcEEEecC
Confidence            579999998 99999999999987620     289999998    543332    2221  0      011235667788


Q ss_pred             HHHhccCCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          193 AKTALLGADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       193 ~~eal~~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ..+++++||+||++...                ..++++++.+..+-.++..+|..+|-+
T Consensus        77 ~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv  136 (329)
T 1b8p_A           77 PMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA  136 (329)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence            88999999999987531                124556666666544677888888744

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.91  E-value=4.3e-05  Score=75.91  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=68.1

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||.. ++..|.+.. +.+|. +++++++.++.+.+...            ...+++|+++++.  +.|
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~vD   70 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQ-DIRIVAACDSDLERARRVHRFIS------------DIPVLDNVPAMLNQVPLD   70 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCT-TEEEEEEECSSHHHHGGGGGTSC------------SCCEESSHHHHHHHSCCS
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHhcC------------CCcccCCHHHHhcCCCCC
Confidence            3579999999999984 888888763 26776 78999988776655310            2345678988876  469


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+..
T Consensus        71 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  103 (359)
T 3m2t_A           71 AVVMAGPPQLHFEMGLLAMS---KGVNVF-VEKPPCA  103 (359)
T ss_dssp             EEEECSCHHHHHHHHHHHHH---TTCEEE-ECSCSCS
T ss_pred             EEEEcCCcHHHHHHHHHHHH---CCCeEE-EECCCcC
Confidence            99999998887776665543   355544 4565543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.91  E-value=1e-05  Score=76.96  Aligned_cols=91  Identities=11%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      +|+|||+|.||.+++..|.+.|  . +|++++|++++++.+.+..             +....++++++++++|+||.|+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G--~~~I~v~nR~~~ka~~la~~~-------------~~~~~~~~~~~~~~aDiVInat  174 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMG--VKDIWVVNRTIERAKALDFPV-------------KIFSLDQLDEVVKKAKSLFNTT  174 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCCEEEEESCHHHHHTCCSSC-------------EEEEGGGHHHHHHTCSEEEECS
T ss_pred             eEEEECcHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHc-------------ccCCHHHHHhhhcCCCEEEECC
Confidence            9999999999999999999998  5 8999999998766654321             1123456777788999999999


Q ss_pred             ChhhHHHHHHHh-hhcCCCCCeEEEeccC
Q 014700          208 PVQFSSSFLEGI-SDYVDPGLPFISLSKG  235 (420)
Q Consensus       208 p~~~l~~vl~~i-~~~l~~~~iVVs~snG  235 (420)
                      |..-..+. ..+ ...++++++|+++.-+
T Consensus       175 p~gm~p~~-~~i~~~~l~~~~~V~Divy~  202 (253)
T 3u62_A          175 SVGMKGEE-LPVSDDSLKNLSLVYDVIYF  202 (253)
T ss_dssp             STTTTSCC-CSCCHHHHTTCSEEEECSSS
T ss_pred             CCCCCCCC-CCCCHHHhCcCCEEEEeeCC
Confidence            85211000 011 2235678899998876

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.90  E-value=6.9e-05  Score=74.05  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             hcCCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--
Q 014700          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--  199 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--  199 (420)
                      |+.++||+|||+|.||.. .+..|.+.. +.+|. ++++++++++   +..            ..+.+++|+++++.+  
T Consensus         4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~~   67 (352)
T 3kux_A            4 MADKIKVGLLGYGYASKTFHAPLIMGTP-GLELAGVSSSDASKVH---ADW------------PAIPVVSDPQMLFNDPS   67 (352)
T ss_dssp             TTCCEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---TTC------------SSCCEESCHHHHHHCSS
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHhhCC-CcEEEEEECCCHHHHH---hhC------------CCCceECCHHHHhcCCC
Confidence            555689999999999996 677777653 26765 7889987654   211            123567799998764  


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      .|+|++|+|.....+++.....   .++.|+ +-|.+..
T Consensus        68 vD~V~i~tp~~~H~~~~~~al~---aGkhV~-~EKPla~  102 (352)
T 3kux_A           68 IDLIVIPTPNDTHFPLAQSALA---AGKHVV-VDKPFTV  102 (352)
T ss_dssp             CCEEEECSCTTTHHHHHHHHHH---TTCEEE-ECSSCCS
T ss_pred             CCEEEEeCChHHHHHHHHHHHH---CCCcEE-EECCCcC
Confidence            8999999998877666655443   455554 4565443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.90  E-value=2e-05  Score=81.62  Aligned_cols=119  Identities=17%  Similarity=0.256  Sum_probs=74.3

Q ss_pred             CeEEEEcccHHHHHHH--HHHHhc----CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          128 NKVVVLGGGSFGTAMA--AHVANK----KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       128 mkI~IIGaGamG~alA--~~La~a----G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      |||+|||+|++|.+..  ..|+..    +...+|.++|.++++++........  .......+..+..++|.++++++||
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~--~~~~~~~~~~i~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARK--YVEELNSPVKVVKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHH--HHHHHTCCCEEEEESCHHHHHTTCS
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHH--HHHHcCCCeEEEEeCCHHHHhCCCC
Confidence            7999999999886532  223332    1124799999999865432211000  0000112335788999999999999


Q ss_pred             EEEEccCh-------------------------------h-------------------hHHHHHHHhhhcCCCCCeEEE
Q 014700          202 YCLHAMPV-------------------------------Q-------------------FSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       202 iVIlaVp~-------------------------------~-------------------~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      +||+++-.                               +                   .+.++++.+..+. |++.+++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~-P~A~~in  157 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMA-PKAYLMQ  157 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence            99998610                               0                   1245666666654 7899999


Q ss_pred             eccCCCcchhhhHHHHHHHHhCC
Q 014700          232 LSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       232 ~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      .+|-+.     .+.+.+.+..+.
T Consensus       158 ~tNP~~-----i~t~a~~~~~~~  175 (477)
T 3u95_A          158 TANPVF-----EITQAVRRWTGA  175 (477)
T ss_dssp             CSSCHH-----HHHHHHHHHHCC
T ss_pred             ecChHH-----HHHHHHHHhCCC
Confidence            999654     345566565443

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.88  E-value=6.4e-05  Score=75.38  Aligned_cols=93  Identities=17%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CCeEEEEccc-HHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaG-amG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ++||+|||+| .||..++..|.+.. +.+|. +++++++..+.+.+..             ++..++|+++++.  +.|+
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~ell~~~~vD~   67 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHP-DAQIVAACDPNEDVRERFGKEY-------------GIPVFATLAEMMQHVQMDA   67 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCT-TEEEEEEECSCHHHHHHHHHHH-------------TCCEESSHHHHHHHSCCSE
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCC-CeEEEEEEeCCHHHHHHHHHHc-------------CCCeECCHHHHHcCCCCCE
Confidence            5799999999 99999999998764 25665 7899998887776542             2345678888876  5999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        68 V~i~tp~~~H~~~~~~al~---aGk~Vl-~EKP~a   98 (387)
T 3moi_A           68 VYIASPHQFHCEHVVQASE---QGLHII-VEKPLT   98 (387)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSCCC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCcee-eeCCcc
Confidence            9999998877666655443   345444 445443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.88  E-value=3e-05  Score=79.15  Aligned_cols=92  Identities=14%  Similarity=0.007  Sum_probs=68.7

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      -..++|+|||+|.+|..+|..|...|  .+|+++++++.........|              +.. .+++++++.+|+|+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~~G--------------~~v-v~LeElL~~ADIVv  307 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAMDG--------------FEV-VTLDDAASTADIVV  307 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEE-CCHHHHGGGCSEEE
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHhcC--------------cee-ccHHHHHhhCCEEE
Confidence            34689999999999999999999887  89999999886543333322              122 36889999999999


Q ss_pred             EccChhhHHHHH-HHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPVQFSSSFL-EGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~~~l~~vl-~~i~~~l~~~~iVVs~snGi  236 (420)
                      .++....+   + ++....++++.+||++..|-
T Consensus       308 ~atgt~~l---I~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          308 TTTGNKDV---ITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             ECCSSSSS---BCHHHHHHSCTTEEEEECSSST
T ss_pred             ECCCCccc---cCHHHHhcCCCCeEEEEcCCCC
Confidence            98765432   2 23345578899999988763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.85  E-value=5.3e-05  Score=77.02  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=67.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      .++|.|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+.|.... ..+..-+      ..++++ +.+||+||+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~~v~~~~~~g~~vi-~GDat~~------~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPDHIETLRKFGMKVF-YGDATRM------DLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHHHHHHHHHTTCCCE-ESCTTCH------HHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHhCCCeEE-EcCCCCH------HHHHhcCCCccCEEEE
Confidence            468999999999999999999998  999999999999999887664321 1111100      012333 678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +++.......+-.....+.++..||.-++
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            99976543333333333445545554444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.85  E-value=3.9e-05  Score=78.30  Aligned_cols=99  Identities=10%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             CCCeEEEEcccHHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~-alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||. .++..|.+.. +.+| .+++++++..+.+.+.....        ...+..++|.++++.  ++|
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~g~~--------~~~~~~~~~~~~ll~~~~vD  152 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEYGVD--------PRKIYDYSNFDKIAKDPKID  152 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHTTCC--------GGGEECSSSGGGGGGCTTCC
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhCCC--------cccccccCCHHHHhcCCCCC
Confidence            357999999999997 8999887753 2565 47899998887776642100        012344568888776  689


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus       153 ~V~iatp~~~h~~~~~~al~---aGk~Vl-~EKPla  184 (433)
T 1h6d_A          153 AVYIILPNSLHAEFAIRAFK---AGKHVM-CEKPMA  184 (433)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred             EEEEcCCchhHHHHHHHHHH---CCCcEE-EcCCCC
Confidence            99999999887776665543   455444 345443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.84  E-value=7.4e-05  Score=72.32  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=91.0

Q ss_pred             hhcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          123 ILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       123 ~~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .|..++||+|+| .|.||..++..+.+.. +.++. +++++...     ..|.....+-+.. +.++.+++|+++++.++
T Consensus        17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~-~~eLvg~vd~~~~~-----~~G~d~gel~G~~-~~gv~v~~dl~~ll~~a   89 (288)
T 3ijp_A           17 QGPGSMRLTVVGANGRMGRELITAIQRRK-DVELCAVLVRKGSS-----FVDKDASILIGSD-FLGVRITDDPESAFSNT   89 (288)
T ss_dssp             ----CEEEEESSTTSHHHHHHHHHHHTCS-SEEEEEEBCCTTCT-----TTTSBGGGGTTCS-CCSCBCBSCHHHHTTSC
T ss_pred             hccCCeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcc-----ccccchHHhhccC-cCCceeeCCHHHHhcCC
Confidence            455678999999 8999999999988753 36655 45665321     0111111111111 23566778999989999


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEE
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~  280 (420)
                      |+||-+++.....+.+.....   .+..+|..+.|+..+..    +.+.+...    ...++..|++...+..       
T Consensus        90 DVvIDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~----~~L~~aa~----~~~~~~a~N~SiGv~l-------  151 (288)
T 3ijp_A           90 EGILDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEE----AQIADFAK----YTTIVKSGNMSLGVNL-------  151 (288)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH----HHHHHHHT----TSEEEECSCCCHHHHH-------
T ss_pred             CEEEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH----HHHHHHhC----cCCEEEECCCcHHHHH-------
Confidence            999988887766655555443   46677777888865432    23444322    2457889998764311       


Q ss_pred             EecCCHHHHHHHHHHHhcCCceEEE
Q 014700          281 VASKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       281 ia~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                          -.+.++++.+.|. .++.+.+
T Consensus       152 ----l~~l~~~aa~~l~-~~~dieI  171 (288)
T 3ijp_A          152 ----LANLVKRAAKALD-DDFDIEI  171 (288)
T ss_dssp             ----HHHHHHHHHHHSC-TTSEEEE
T ss_pred             ----HHHHHHHHHHhcC-CCCCEEE
Confidence                0244566777775 2444443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.83  E-value=8.1e-05  Score=74.01  Aligned_cols=97  Identities=8%  Similarity=0.012  Sum_probs=67.7

Q ss_pred             hcCCCeEEEEcccHHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--
Q 014700          124 LERTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--  199 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~-alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--  199 (420)
                      |+.++||+|||+|.+|. .++..|...+  .+|. +++++++.++.+.+...            ...+++|+++++.+  
T Consensus        23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~--~~lvav~d~~~~~a~~~a~~~~------------~~~~~~~~~~ll~~~~   88 (361)
T 3u3x_A           23 MMDELRFAAVGLNHNHIYGQVNCLLRAG--ARLAGFHEKDDALAAEFSAVYA------------DARRIATAEEILEDEN   88 (361)
T ss_dssp             ---CCEEEEECCCSTTHHHHHHHHHHTT--CEEEEEECSCHHHHHHHHHHSS------------SCCEESCHHHHHTCTT
T ss_pred             hccCcEEEEECcCHHHHHHHHHHhhcCC--cEEEEEEcCCHHHHHHHHHHcC------------CCcccCCHHHHhcCCC
Confidence            55567999999999994 5677776655  7755 78999998888876521            12456799998764  


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      .|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        89 vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  123 (361)
T 3u3x_A           89 IGLIVSAAVSSERAELAIRAMQ---HGKDVL-VDKPGMT  123 (361)
T ss_dssp             CCEEEECCCHHHHHHHHHHHHH---TTCEEE-EESCSCS
T ss_pred             CCEEEEeCChHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence            8999999998877666655543   355444 4565543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.82  E-value=4.8e-05  Score=74.55  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccHHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~-alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      +++||+|||+|.+|. .++..|...+  .+| .+++++++.++.+.+...            .+.+.+|+++++.  +.|
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~--~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~~D   68 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAG--AELAGVFESDSDNRAKFTSLFP------------SVPFAASAEQLITDASID   68 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTT--CEEEEEECSCTTSCHHHHHHST------------TCCBCSCHHHHHTCTTCC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCC--cEEEEEeCCCHHHHHHHHHhcC------------CCcccCCHHHHhhCCCCC
Confidence            357999999999996 6777776655  775 588999888777766421            1234568888876  689


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        69 ~V~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~a  100 (336)
T 2p2s_A           69 LIACAVIPCDRAELALRTLD---AGKDFF-TAKPPL  100 (336)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred             EEEEeCChhhHHHHHHHHHH---CCCcEE-EeCCCC
Confidence            99999998877666655433   455444 345443

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.82  E-value=0.00068  Score=69.37  Aligned_cols=107  Identities=15%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHh--cC--CCCCCCCC-CC-----CCceEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK--HC--NCRYFPEQ-KL-----PENVIATTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~--g~--~~~~l~~~-~l-----~~~i~a~td~~  194 (420)
                      +.+||||||+|.||..++..+.+.. +.+|. +++++++.++...+.  |.  ......+. .+     .....+++|.+
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~-~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e  100 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQ-GIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND  100 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSS-SEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence            3579999999999999999887642 25555 678998887776543  30  00000000 00     11356788999


Q ss_pred             Hhcc--CCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TALL--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal~--~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.+.  +.|+|++|+|.. ...++...   .++.++-|++..+++
T Consensus       101 eLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~~nk~l  142 (446)
T 3upl_A          101 LILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVMMNVEA  142 (446)
T ss_dssp             HHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEECCHHH
T ss_pred             HHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEecCccc
Confidence            9876  589999999864 33333322   233567777655443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.82  E-value=7e-05  Score=75.58  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             chhhcCCCeEEEEcccHHHHHHHHHHHhcCC-------CCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC
Q 014700          121 TDILERTNKVVVLGGGSFGTAMAAHVANKKS-------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD  192 (420)
Q Consensus       121 ~~~~~~~mkI~IIGaGamG~alA~~La~aG~-------~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td  192 (420)
                      .+.|++.+||||||+|.||...+..|.+.+.       +.+|. ++|++++.++++.+....            .++++|
T Consensus        20 ~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~------------~~~y~d   87 (412)
T 4gqa_A           20 FQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA------------EKAYGD   87 (412)
T ss_dssp             -----CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC------------SEEESS
T ss_pred             cccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC------------CeEECC
Confidence            3456667899999999999998888876420       13555 678999988888765311            146778


Q ss_pred             HHHhcc--CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          193 AKTALL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       193 ~~eal~--~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      .++.+.  +.|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        88 ~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKP~a~  131 (412)
T 4gqa_A           88 WRELVNDPQVDVVDITSPNHLHYTMAMAAIA---AGKHVY-CEKPLAV  131 (412)
T ss_dssp             HHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE-EESCSCS
T ss_pred             HHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCCeE-eecCCcC
Confidence            998875  58999999998877666655443   355444 5666554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.80  E-value=2.8e-05  Score=80.15  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHh-ccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTA-LLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~ea-l~~aDiV  203 (420)
                      +.|||.|+|+|.+|..+|..|...|  |+|++.+.+++.++.+.+.. .... .++..-+      +.++++ +++||++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~~~~~~~~~~~-~~~~i~Gd~~~~------~~L~~Agi~~ad~~   72 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDGDRLRELQDKY-DLRVVNGHASHP------DVLHEAGAQDADML   72 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCHHHHHHHHHHS-SCEEEESCTTCH------HHHHHHTTTTCSEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHhc-CcEEEEEcCCCH------HHHHhcCCCcCCEE
Confidence            4689999999999999999999988  99999999999998887642 1111 1110000      123444 6789999


Q ss_pred             EEccChhhHH
Q 014700          204 LHAMPVQFSS  213 (420)
Q Consensus       204 IlaVp~~~l~  213 (420)
                      |.++.++..-
T Consensus        73 ia~t~~De~N   82 (461)
T 4g65_A           73 VAVTNTDETN   82 (461)
T ss_dssp             EECCSCHHHH
T ss_pred             EEEcCChHHH
Confidence            9999876543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.79  E-value=4.1e-05  Score=74.37  Aligned_cols=97  Identities=13%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.||.+++..|++.|  . +|++|+|+.++++.+.+.... .      .. .+...+++.+.+.++|+||.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~~~ka~~la~~~~~-~------~~-~~~~~~~~~~~~~~aDivIn  210 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTA--AERIDMANRTVEKAERLVREGDE-R------RS-AYFSLAEAETRLAEYDIIIN  210 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSSHHHHHHHHHHSCS-S------SC-CEECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHhhh-c------cC-ceeeHHHHHhhhccCCEEEE
Confidence            579999999999999999999988  6 999999999988888764210 0      00 11111345666789999999


Q ss_pred             ccChhhHHHH--HHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSF--LEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~v--l~~i-~~~l~~~~iVVs~sn  234 (420)
                      |+|.......  + .+ ...++++.+++++.-
T Consensus       211 ~t~~~~~~~~~~~-~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQ-PLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCC-SSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC
Confidence            9996432100  0 01 234667888888764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.78  E-value=8.3e-05  Score=72.84  Aligned_cols=99  Identities=23%  Similarity=0.302  Sum_probs=65.1

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhc-CCCCeEEEEeCCHH---HHHHHHHhcCCCCCCCCCCCCCceEEe--CCHHHhccCC
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPA---VCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~a-G~~~~V~l~~r~~~---~~~~i~~~g~~~~~l~~~~l~~~i~a~--td~~eal~~a  200 (420)
                      |||+||| +|.+|.+++..|+.. +...++.++|+++.   .+..+.  +.        ..+..+...  ++..+++++|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~--~~--------~~~~~v~~~~~~~~~~~~~~a   70 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLS--HI--------PTAVKIKGFSGEDATPALEGA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHH--TS--------CSSEEEEEECSSCCHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhh--CC--------CCCceEEEecCCCcHHHhCCC
Confidence            7999999 899999999999876 44468999999861   112222  11        112233331  2445668999


Q ss_pred             cEEEEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+||++....                .++++.+.+.++ .++.+++..+|-++
T Consensus        71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd  122 (312)
T 3hhp_A           71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVN  122 (312)
T ss_dssp             SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcch
Confidence            9999986321                244555666665 36778888887543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.78  E-value=8.5e-05  Score=71.89  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ..+||+|+|+ |.||...+..|.+.|  +++ ++..++...      +.  .       ..++.+..+++++.+  ++|+
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g--~~~-V~~V~p~~~------g~--~-------~~G~~vy~sl~el~~~~~~D~   67 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYG--TKM-VGGVTPGKG------GT--T-------HLGLPVFNTVREAVAATGATA   67 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TC--E-------ETTEEEESSHHHHHHHHCCCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CeE-EEEeCCCcc------cc--e-------eCCeeccCCHHHHhhcCCCCE
Confidence            3579999998 999999999999887  673 344444210      00  0       014567788988877  8999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                      +++++|.....+++++.... . -..+|.++.|+..+..+.+.+..++
T Consensus        68 viI~tP~~~~~~~~~ea~~~-G-i~~iVi~t~G~~~~~~~~l~~~A~~  113 (288)
T 2nu8_A           68 SVIYVPAPFCKDSILEAIDA-G-IKLIITITEGIPTLDMLTVKVKLDE  113 (288)
T ss_dssp             EEECCCGGGHHHHHHHHHHT-T-CSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred             EEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999988888887653 1 1345557778875433344444443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.77  E-value=0.00024  Score=70.67  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=63.7

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||.. .+..|.+.. +.+|. ++++++++++   +..            ..+.+++|+++++.  +.|
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~~~D   69 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVP-GLNLAFVASRDEEKVK---RDL------------PDVTVIASPEAAVQHPDVD   69 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---HHC------------TTSEEESCHHHHHTCTTCS
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHHH---hhC------------CCCcEECCHHHHhcCCCCC
Confidence            3579999999999996 666776652 26775 7789987644   221            12466789999887  689


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        70 ~V~i~tp~~~H~~~~~~al~---aGk~Vl-~EKPla  101 (364)
T 3e82_A           70 LVVIASPNATHAPLARLALN---AGKHVV-VDKPFT  101 (364)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEEEeCChHHHHHHHHHHHH---CCCcEE-EeCCCc
Confidence            99999998877666655433   455554 456444

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.76  E-value=5e-05  Score=74.89  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             CCeEEEEcccHHHHHHHHH-H-HhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700          127 TNKVVVLGGGSFGTAMAAH-V-ANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~-L-a~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD  201 (420)
                      ++||+|||+|.||..+... + .... +.+|. +++++++..+...+.             .++.+++|+++++.+  .|
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~-~~~l~av~d~~~~~~~~~~~~-------------~~~~~~~~~~~ll~~~~~D   67 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKD-SWHVAHIFRRHAKPEEQAPIY-------------SHIHFTSDLDEVLNDPDVK   67 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTT-TEEEEEEECSSCCGGGGSGGG-------------TTCEEESCTHHHHTCTTEE
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCC-CeEEEEEEcCCHhHHHHHHhc-------------CCCceECCHHHHhcCCCCC
Confidence            5799999999999864333 4 3321 36777 788887644221111             134667899998775  89


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        68 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a   99 (345)
T 3f4l_A           68 LVVVCTHADSHFEYAKRALE---AGKNVL-VEKPFT   99 (345)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred             EEEEcCChHHHHHHHHHHHH---cCCcEE-EeCCCC
Confidence            99999998877666655443   455555 456443

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.74  E-value=8.5e-06  Score=78.60  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.+|.+++..|++.|  . +|++++|+.++++++.+..             .....+++++++.++|+||-
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~~a~~la~~~-------------~~~~~~~~~~~~~~aDiVIn  181 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIV--RPTLTVANRTMSRFNNWSLNI-------------NKINLSHAESHLDEFDIIIN  181 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCGGGGTTCCSCC-------------EEECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhc-------------ccccHhhHHHHhcCCCEEEE
Confidence            579999999999999999999998  6 8999999987654443210             11123456666789999999


Q ss_pred             ccChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      ++|.......-..+ ...++++.+|+.+.-
T Consensus       182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY  211 (277)
T 3don_A          182 TTPAGMNGNTDSVISLNRLASHTLVSDIVY  211 (277)
T ss_dssp             CCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred             CccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence            99964222110001 344677888998864

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.72  E-value=0.00016  Score=71.10  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             CCeEEEEccc-HHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaG-amG~alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ++||+|||+| .||...+..|.+.+.+.+| .+++++++.++.+.+...            ...+++|.++++.  +.|+
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCCSE
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC------------CCcccCCHHHHhcCCCCCE
Confidence            4699999999 8999999999876212566 478999998887766421            0256678998875  5899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+..
T Consensus        86 V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  117 (340)
T 1zh8_A           86 VDLTLPVELNLPFIEKALR---KGVHVI-CEKPIST  117 (340)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSSS
T ss_pred             EEEeCCchHHHHHHHHHHH---CCCcEE-EeCCCCC
Confidence            9999998877666655443   355544 3565543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.72  E-value=2.4e-05  Score=78.49  Aligned_cols=97  Identities=16%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|+|||+|.+|..++..+...|  .+|++++|+++..+.+.+. +....      .  ...-..++++.++++|+||.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~~~~------~--~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCGRIH------T--RYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTTSSE------E--EECCHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCCeeE------e--ccCCHHHHHHHHcCCCEEEE
Confidence            579999999999999999999988  7999999999887777653 21100      0  00001245666788999999


Q ss_pred             ccChhh--HHHH-HHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQF--SSSF-LEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~--l~~v-l~~i~~~l~~~~iVVs~s  233 (420)
                      |++...  ...+ .++..+.++++.+||++.
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            885322  1111 233445567888888876

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.71  E-value=0.00021  Score=73.92  Aligned_cols=86  Identities=10%  Similarity=0.053  Sum_probs=64.0

Q ss_pred             cCCCeEEEEcc----cHHHHHHHHHHHhc-CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          125 ERTNKVVVLGG----GSFGTAMAAHVANK-KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       125 ~~~mkI~IIGa----GamG~alA~~La~a-G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      +.++||+|||+    |.||..++..|.+. . +.+|. +++++++.++.+.+...         .+ .+.+++|+++++.
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~-~~~lvav~d~~~~~a~~~a~~~g---------~~-~~~~~~d~~ell~  105 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS-QFQIVALYNPTLKSSLQTIEQLQ---------LK-HATGFDSLESFAQ  105 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTT-TEEEEEEECSCHHHHHHHHHHTT---------CT-TCEEESCHHHHHH
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCC-CeEEEEEEeCCHHHHHHHHHHcC---------CC-cceeeCCHHHHhc
Confidence            44579999999    99999999999885 2 26765 78999988887776421         01 2356778998875


Q ss_pred             --CCcEEEEccChhhHHHHHHHhhh
Q 014700          199 --GADYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       199 --~aDiVIlaVp~~~l~~vl~~i~~  221 (420)
                        +.|+|++|+|.....+++.....
T Consensus       106 ~~~vD~V~I~tp~~~H~~~~~~al~  130 (479)
T 2nvw_A          106 YKDIDMIVVSVKVPEHYEVVKNILE  130 (479)
T ss_dssp             CTTCSEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHH
Confidence              68999999998776666655433

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.69  E-value=0.00025  Score=72.48  Aligned_cols=102  Identities=12%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC----CHHHhcc
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT----DAKTALL  198 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t----d~~eal~  198 (420)
                      ++.++||+|||+|.||...+..|.+.. +.+|. ++++++++++.+.+.-..      ..++ ...+.+    |.++++.
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~------~g~~-~~~~~~~~~~~~~~ll~   88 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKK------NGKK-PAKVFGNGNDDYKNMLK   88 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHH------TTCC-CCEEECSSTTTHHHHTT
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHHHh------cCCC-CCceeccCCCCHHHHhc
Confidence            334579999999999999999988753 26664 789999888776542000      0001 134566    8999876


Q ss_pred             --CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          199 --GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       199 --~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                        +.|+|++|+|.....+++.....   .++.|+ +-|-+.
T Consensus        89 ~~~vD~V~i~tp~~~h~~~~~~al~---aGkhV~-~EKP~a  125 (444)
T 2ixa_A           89 DKNIDAVFVSSPWEWHHEHGVAAMK---AGKIVG-MEVSGA  125 (444)
T ss_dssp             CTTCCEEEECCCGGGHHHHHHHHHH---TTCEEE-ECCCCC
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCc
Confidence              58999999998877666655433   455554 345443

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00016  Score=73.33  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             CCCeEEEEcccH---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC-
Q 014700          126 RTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-  199 (420)
Q Consensus       126 ~~mkI~IIGaGa---mG~alA~~La~aG~~~~V~--l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~-  199 (420)
                      .++||+|||+|.   ||...+..+...+ +.+|.  +++++++.++.+.+....         + ...+++|+++++.+ 
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~---------~-~~~~~~~~~~ll~~~  104 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDD-HYELVAGALSSTPEKAEASGRELGL---------D-PSRVYSDFKEMAIRE  104 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTS-CEEEEEEECCSSHHHHHHHHHHHTC---------C-GGGBCSCHHHHHHHH
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHcCC---------C-cccccCCHHHHHhcc
Confidence            346999999999   9999888887765 25665  579999988877664211         0 01345688887754 


Q ss_pred             ------CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          200 ------ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       200 ------aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                            .|+|++|+|.....+++.....   .++.|+ +-|.+..
T Consensus       105 ~~~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  145 (417)
T 3v5n_A          105 AKLKNGIEAVAIVTPNHVHYAAAKEFLK---RGIHVI-CDKPLTS  145 (417)
T ss_dssp             HHCTTCCSEEEECSCTTSHHHHHHHHHT---TTCEEE-EESSSCS
T ss_pred             cccCCCCcEEEECCCcHHHHHHHHHHHh---CCCeEE-EECCCcC
Confidence                  8999999998877666655443   455554 4565543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.66  E-value=8.4e-05  Score=74.81  Aligned_cols=98  Identities=17%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             CCCeEEEEcccH---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--
Q 014700          126 RTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--  198 (420)
Q Consensus       126 ~~mkI~IIGaGa---mG~alA~~La~aG~~~~V~--l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--  198 (420)
                      .++||+|||+|.   ||...+..+...+ +.+|.  +++++++.++.+.+....         + ...+++|+++++.  
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~---------~-~~~~~~~~~~ll~~~   79 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDN-TFVLVAGAFDIDPIRGSAFGEQLGV---------D-SERCYADYLSMFEQE   79 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGG-SEEEEEEECCSSHHHHHHHHHHTTC---------C-GGGBCSSHHHHHHHH
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCC-CeEEEEEEeCCCHHHHHHHHHHhCC---------C-cceeeCCHHHHHhcc
Confidence            457999999999   9999998887764 25766  579999988887764211         0 0134568888775  


Q ss_pred             -----CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          199 -----GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       199 -----~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                           +.|+|++|+|.....+++.....   .++.|+ +-|.+..
T Consensus        80 ~~~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  120 (398)
T 3dty_A           80 ARRADGIQAVSIATPNGTHYSITKAALE---AGLHVV-CEKPLCF  120 (398)
T ss_dssp             TTCTTCCSEEEEESCGGGHHHHHHHHHH---TTCEEE-ECSCSCS
T ss_pred             cccCCCCCEEEECCCcHHHHHHHHHHHH---CCCeEE-EeCCCcC
Confidence                 38999999999887776665544   355554 4565543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.66  E-value=0.00011  Score=63.60  Aligned_cols=90  Identities=7%  Similarity=0.017  Sum_probs=64.3

Q ss_pred             hcCCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          124 LERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       124 ~~~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      +....+|+|||+    |.+|..++..|.+.|  ++  +|+++++. +.+                .++.+..+++++...
T Consensus        19 l~~p~~iaVVGas~~~g~~G~~~~~~l~~~G--~~--v~~Vnp~~-~~i----------------~G~~~y~sl~~l~~~   77 (144)
T 2d59_A           19 LTRYKKIALVGASPKPERDANIVMKYLLEHG--YD--VYPVNPKY-EEV----------------LGRKCYPSVLDIPDK   77 (144)
T ss_dssp             HHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CE--EEEECTTC-SEE----------------TTEECBSSGGGCSSC
T ss_pred             HcCCCEEEEEccCCCCCchHHHHHHHHHHCC--CE--EEEECCCC-CeE----------------CCeeccCCHHHcCCC
Confidence            333679999999    799999999999988  76  45555531 110                135566678886668


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      .|++++++|...+.++++++...- ... + .++.|..
T Consensus        78 vDlvvi~vp~~~~~~vv~~~~~~g-i~~-i-~~~~g~~  112 (144)
T 2d59_A           78 IEVVDLFVKPKLTMEYVEQAIKKG-AKV-V-WFQYNTY  112 (144)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHT-CSE-E-EECTTCC
T ss_pred             CCEEEEEeCHHHHHHHHHHHHHcC-CCE-E-EECCCch
Confidence            999999999999999998876532 222 3 3456665

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.63  E-value=0.00027  Score=70.01  Aligned_cols=92  Identities=11%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      .++||+|||+|.||.. .+..|.+.. +.+|. ++++++++   +.+..            ..+.+++|+++++.  +.|
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~---~~~~~------------~~~~~~~~~~~ll~~~~vD   67 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLD-EYQISKIMTSRTEE---VKRDF------------PDAEVVHELEEITNDPAIE   67 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECSCHHH---HHHHC------------TTSEEESSTHHHHTCTTCC
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHH---HHhhC------------CCCceECCHHHHhcCCCCC
Confidence            4579999999999996 677776542 26765 67888865   22221            02456778999877  689


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        68 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla   99 (358)
T 3gdo_A           68 LVIVTTPSGLHYEHTMACIQ---AGKHVV-MEKPMT   99 (358)
T ss_dssp             EEEECSCTTTHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEEcCCcHHHHHHHHHHHH---cCCeEE-EecCCc
Confidence            99999998877666655443   455554 356544

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.63  E-value=0.00019  Score=69.76  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=64.6

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r--~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |||+|+| +|.+|.+++..|+..+...++.++|+  ++++++.....-.+  ... ...+..+.. ++ .++++++|+||
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~--~~~-~~~~~~v~~-~~-~~a~~~aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIA-YDSNTRVRQ-GG-YEDTAGSDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHH--HHT-TTCCCEEEE-CC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHH--HHh-hCCCcEEEe-CC-HHHhCCCCEEE
Confidence            6999999 99999999999988773237999999  77554321110000  000 011112333 34 56799999999


Q ss_pred             EccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          205 HAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       205 laVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++...                ..++++++.+..+ .++.+|+..+|.+
T Consensus        76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv  122 (303)
T 1o6z_A           76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV  122 (303)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChH
Confidence            98642                1245555666655 4677777777754

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.62  E-value=3.9e-05  Score=66.28  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       126 ~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      ...+|+|||+    |.+|..++..|.+.|  ++  +|.+++.+ .+.+                .++.+..+++|+-+..
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G--~~--v~~vnp~~~~~~i----------------~G~~~~~sl~el~~~v   71 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG--YR--VLPVNPRFQGEEL----------------FGEEAVASLLDLKEPV   71 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTT--CE--EEEECGGGTTSEE----------------TTEECBSSGGGCCSCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCC--CE--EEEeCCCcccCcC----------------CCEEecCCHHHCCCCC
Confidence            3579999999    899999999999988  76  66666642 1111                1355666788866689


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++++++|.....++++++...- ...++  ++.|..
T Consensus        72 Dlavi~vp~~~~~~v~~~~~~~g-i~~i~--~~~g~~  105 (140)
T 1iuk_A           72 DILDVFRPPSALMDHLPEVLALR-PGLVW--LQSGIR  105 (140)
T ss_dssp             SEEEECSCHHHHTTTHHHHHHHC-CSCEE--ECTTCC
T ss_pred             CEEEEEeCHHHHHHHHHHHHHcC-CCEEE--EcCCcC
Confidence            99999999998888888776532 23343  345665

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.62  E-value=0.00029  Score=71.71  Aligned_cols=113  Identities=11%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             CCeEEEEcccHHHHHH--HHHHHh--cCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGGGSFGTAM--AAHVAN--KKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~al--A~~La~--aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +|||+|||+|.+ .+.  ...|+.  .+. ..+|.++|.++++++........   +....  ..+..++|..+++++||
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~---~~~~~--~~v~~t~d~~~al~~AD   75 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKR---LVKDR--FKVLISDTFEGAVVDAK   75 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHH---HHTTS--SEEEECSSHHHHHTTCS
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHH---HhhCC--eEEEEeCCHHHHhCCCC
Confidence            589999999985 332  223454  332 36899999999876543221100   00001  35667788878899999


Q ss_pred             EEEEccCh------------------------------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHH
Q 014700          202 YCLHAMPV------------------------------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS  245 (420)
Q Consensus       202 iVIlaVp~------------------------------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~s  245 (420)
                      +||++.-.                                    ..+.++++.+.++-  +.+++..+|.++     .+.
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvd-----i~t  148 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSG-----HIT  148 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHH-----HHH
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHH-----HHH
Confidence            99999721                                    01456667777764  889999998653     445


Q ss_pred             HHHHHHh
Q 014700          246 QIIPQAL  252 (420)
Q Consensus       246 e~l~~~l  252 (420)
                      +.+.+..
T Consensus       149 ~a~~k~~  155 (417)
T 1up7_A          149 EFVRNYL  155 (417)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            5665554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.62  E-value=6.8e-05  Score=74.94  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=64.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|+|+|.+|..++..|...|  ++|++++|++++.+.+.+.... .      +.....-..+++++++++|+||.+
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g~-~------~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFGG-R------VITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT-S------EEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcCc-e------EEEecCCHHHHHHHHhCCCEEEEC
Confidence            479999999999999999999988  8999999999887776553210 0      000000012455667889999999


Q ss_pred             cChhh--HHH-HHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQF--SSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~--l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      ++...  ... +.++..+.++++..||++.
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            98542  111 1234445567777777764

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.61  E-value=4e-05  Score=71.14  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccHHHHHHHHH--HHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAH--VANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~--La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..++|+|||+|.+|.+++..  +...|  +++. ++|+++++...         ...+.    ++...+++++.+++.|+
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~~~~g--~~iVg~~D~dp~k~g~---------~i~gv----~V~~~~dl~eli~~~D~  148 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFTKNNN--TKISMAFDINESKIGT---------EVGGV----PVYNLDDLEQHVKDESV  148 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTC---------EETTE----EEEEGGGHHHHCSSCCE
T ss_pred             CCCEEEEEccCHHHHHHHHHHhcccCC--cEEEEEEeCCHHHHHh---------HhcCC----eeechhhHHHHHHhCCE
Confidence            34799999999999999995  33344  6665 67888763221         01111    23446688888766699


Q ss_pred             EEEccChhhHHHHHHHhhh
Q 014700          203 CLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~  221 (420)
                      +++|+|+...+++++.+..
T Consensus       149 ViIAvPs~~~~ei~~~l~~  167 (215)
T 2vt3_A          149 AILTVPAVAAQSITDRLVA  167 (215)
T ss_dssp             EEECSCHHHHHHHHHHHHH
T ss_pred             EEEecCchhHHHHHHHHHH
Confidence            9999999888888877654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.61  E-value=5.7e-05  Score=76.51  Aligned_cols=105  Identities=14%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC---CCce-EE---------eCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL---PENV-IA---------TTDA  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l---~~~i-~a---------~td~  193 (420)
                      ..+|+|||+|.+|..++..+...|  .+|+++|++++..+.+.+.|.....+.....   ..+. +.         ..++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            579999999999999999999888  7999999998877766554321000000000   0000 00         0025


Q ss_pred             HHhccCCcEEEEc--cChhhHHHHH-HHhhhcCCCCCeEEEec
Q 014700          194 KTALLGADYCLHA--MPVQFSSSFL-EGISDYVDPGLPFISLS  233 (420)
Q Consensus       194 ~eal~~aDiVIla--Vp~~~l~~vl-~~i~~~l~~~~iVVs~s  233 (420)
                      ++.+.++|+||.+  +|......++ ++....++++.+||.+.
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence            5667789999999  5521110111 22334467888998886

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.54  E-value=0.00048  Score=68.33  Aligned_cols=104  Identities=20%  Similarity=0.295  Sum_probs=69.8

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCC-----CCeEEEEeCCHHH--HH--HHHHhcCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPAV--CQ--SINEKHCNCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~-----~~~V~l~~r~~~~--~~--~i~~~g~~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      .||+|+|| |.+|.+++..|+....     ..++.++|..+..  ++  .+.-.+..      +.+...+...+++.+++
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~------~~~~~~~~~~~~~~~a~   98 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA------FPLLDKVVVTADPRVAF   98 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT------CTTEEEEEEESCHHHHT
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC------ccCCCcEEEcCChHHHh
Confidence            49999996 9999999999987641     1279999987632  12  11111211      12233566778888999


Q ss_pred             cCCcEEEEcc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          198 LGADYCLHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       198 ~~aDiVIlaV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++||+||++-  |-              ..++++.+.|.++..++.+|+.++|.++
T Consensus        99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd  154 (345)
T 4h7p_A           99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN  154 (345)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence            9999999963  21              1255566667776667888887888543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.52  E-value=0.00011  Score=71.95  Aligned_cols=84  Identities=12%  Similarity=0.150  Sum_probs=57.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ++||+|||+|+||..++..|.+.+ +.++ .+++++++.     +.+            .++..++|+++.+.++|+||+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~-~~elvav~d~~~~~-----~~~------------~gv~~~~d~~~ll~~~DvVii   64 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATL-----DTK------------TPVFDVADVDKHADDVDVLFL   64 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCC-----SSS------------SCEEEGGGGGGTTTTCSEEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCC-CCEEEEEEcCCHHH-----hhc------------CCCceeCCHHHHhcCCCEEEE
Confidence            579999999999999999998764 2565 477887542     100            135566788777778999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      |+|+....+.+..   .++.+..+|.
T Consensus        65 atp~~~h~~~~~~---al~aG~~Vv~   87 (320)
T 1f06_A           65 CMGSATDIPEQAP---KFAQFACTVD   87 (320)
T ss_dssp             CSCTTTHHHHHHH---HHTTTSEEEC
T ss_pred             cCCcHHHHHHHHH---HHHCCCEEEE
Confidence            9998754333322   2334555554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.52  E-value=0.0001  Score=70.59  Aligned_cols=95  Identities=16%  Similarity=0.272  Sum_probs=61.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVIl  205 (420)
                      .++|.|+|+|.||.+++..|++.|  .+|++|+|+.++++.+.+....  + .      .+.+ .+++++.+ ++|+||.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~--~-~------~~~~-~~~~~~~~~~~DivIn  186 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP--Y-G------NIQA-VSMDSIPLQTYDLVIN  186 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG--G-S------CEEE-EEGGGCCCSCCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHccc--c-C------CeEE-eeHHHhccCCCCEEEE
Confidence            579999999999999999999998  8999999999888877654110  0 0      1222 23444223 8999999


Q ss_pred             ccChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      ++|......+. .+ ...++++.+++.+.-
T Consensus       187 ~t~~~~~~~~~-~i~~~~l~~~~~v~D~~y  215 (272)
T 1p77_A          187 ATSAGLSGGTA-SVDAEILKLGSAFYDMQY  215 (272)
T ss_dssp             CCCC--------CCCHHHHHHCSCEEESCC
T ss_pred             CCCCCCCCCCC-CCCHHHcCCCCEEEEeeC
Confidence            99965432211 11 112334667777653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.50  E-value=0.00013  Score=67.61  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC---HHHh-ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD---AKTA-LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td---~~ea-l~~aDi  202 (420)
                      .++|.|+|+|.+|..++..|.+.|  + |++++++++.++.+. .+.... ..+         .++   ++++ +.++|.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~~~~~~~~-~~~~~i-~gd---------~~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKKVLR-SGANFV-HGD---------PTRVSDLEKANVRGARA   74 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGGGHHHHHH-TTCEEE-ESC---------TTCHHHHHHTTCTTCSE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCHHHHHHHh-cCCeEE-EcC---------CCCHHHHHhcCcchhcE
Confidence            568999999999999999999988  8 999999998877766 332110 000         012   2233 678999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ||++++.+...-.+......+.++..+|.-.
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           75 VIVDLESDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEEcCCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            9999997654433333344445553444433

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.50  E-value=0.00042  Score=68.51  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCC------CCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKS------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--  198 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~------~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--  198 (420)
                      .||||||+|.||...+..|.....      +.+|. +++++++.++.+.+....            ..+.+|.++++.  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~------------~~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW------------STTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC------------SEEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC------------CcccCCHHHHhcCC
Confidence            489999999999988887765320      12444 779999988887765311            146679999875  


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +.|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        75 ~iDaV~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  110 (390)
T 4h3v_A           75 DVQLVDVCTPGDSHAEIAIAALE---AGKHVL-CEKPLAN  110 (390)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHH---TTCEEE-EESSSCS
T ss_pred             CCCEEEEeCChHHHHHHHHHHHH---cCCCce-eecCccc
Confidence            47999999998887766655443   355443 5676654

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.50  E-value=0.00023  Score=71.32  Aligned_cols=95  Identities=13%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..||+|||+| ||...+..+.+...+.++. +++|+.++.+++.+..             ++...+|.++.+.+.|++++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-------------gv~~~~~~~~l~~~~D~v~i   72 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-------------GIPLYTSPEQITGMPDIACI   72 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-------------TCCEESSGGGCCSCCSEEEE
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-------------CCCEECCHHHHhcCCCEEEE
Confidence            4699999999 8998888877652125666 6789999888887752             23456789998899999999


Q ss_pred             ccChhhH----HHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          206 AMPVQFS----SSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       206 aVp~~~l----~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++|+...    .++.....   +.|+-|+ +-|-+..+
T Consensus        73 ~~p~~~h~~~~~~~a~~al---~aGkhVl-~EKPl~~~  106 (372)
T 4gmf_A           73 VVRSTVAGGAGTQLARHFL---ARGVHVI-QEHPLHPD  106 (372)
T ss_dssp             CCC--CTTSHHHHHHHHHH---HTTCEEE-EESCCCHH
T ss_pred             ECCCcccchhHHHHHHHHH---HcCCcEE-EecCCCHH
Confidence            9997543    34443332   2355444 34555443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.49  E-value=0.0002  Score=72.44  Aligned_cols=71  Identities=15%  Similarity=0.265  Sum_probs=54.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..++|+|||+|.||..++..|...|  . +|++++|++++.+.+.+. |..            .....++.+.+.++|+|
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G--~~~V~v~~r~~~ra~~la~~~g~~------------~~~~~~l~~~l~~aDvV  231 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRTYERAVELARDLGGE------------AVRFDELVDHLARSDVV  231 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHHHTCE------------ECCGGGHHHHHHTCSEE
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHcCCc------------eecHHhHHHHhcCCCEE
Confidence            4679999999999999999999988  6 899999999877555442 211            00113566777899999


Q ss_pred             EEccChh
Q 014700          204 LHAMPVQ  210 (420)
Q Consensus       204 IlaVp~~  210 (420)
                      |.|++..
T Consensus       232 i~at~~~  238 (404)
T 1gpj_A          232 VSATAAP  238 (404)
T ss_dssp             EECCSSS
T ss_pred             EEccCCC
Confidence            9999854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.48  E-value=0.00024  Score=67.85  Aligned_cols=95  Identities=13%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .++|.|+|+|.+|.+++..|++.|  .+|++++|+.++++.+.+.-..  + .      .+.+ .+.++.. .++|+||.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~~~~~~~la~~~~~--~-~------~~~~-~~~~~~~~~~~DivVn  186 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAH--T-G------SIQA-LSMDELEGHEFDLIIN  186 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGG--G-S------SEEE-CCSGGGTTCCCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHhhc--c-C------CeeE-ecHHHhccCCCCEEEE
Confidence            579999999999999999999998  8999999999888777653100  0 0      1222 2333322 48999999


Q ss_pred             ccChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      +++.....++ ..+ ...++++.+++.+.-
T Consensus       187 ~t~~~~~~~~-~~i~~~~l~~~~~v~D~~y  215 (271)
T 1nyt_A          187 ATSSGISGDI-PAIPSSLIHPGIYCYDMFY  215 (271)
T ss_dssp             CCSCGGGTCC-CCCCGGGCCTTCEEEESCC
T ss_pred             CCCCCCCCCC-CCCCHHHcCCCCEEEEecc
Confidence            9995432111 012 123566777877653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.47  E-value=0.00012  Score=70.68  Aligned_cols=97  Identities=9%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|.|+|+|.+|.+++..|++.|. .+|++++|+.++++++.+.....         ..+.+. ++++...++|+||-
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~-~~v~v~~R~~~~a~~la~~~~~~---------~~~~~~-~~~~l~~~aDiIIn  193 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQP-ASITVTNRTFAKAEQLAELVAAY---------GEVKAQ-AFEQLKQSYDVIIN  193 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCC-SEEEEEESSHHHHHHHHHHHGGG---------SCEEEE-EGGGCCSCEEEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhcc---------CCeeEe-eHHHhcCCCCEEEE
Confidence            35799999999999999999999882 39999999999888776642110         012222 34444478999999


Q ss_pred             ccChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      |+|.....+.. .+ ...++++.+|+.+.-
T Consensus       194 aTp~gm~~~~~-~l~~~~l~~~~~V~DlvY  222 (281)
T 3o8q_A          194 STSASLDGELP-AIDPVIFSSRSVCYDMMY  222 (281)
T ss_dssp             CSCCCC----C-SCCGGGEEEEEEEEESCC
T ss_pred             cCcCCCCCCCC-CCCHHHhCcCCEEEEecC
Confidence            99965322110 11 234556777888763

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.47  E-value=0.00016  Score=72.64  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=65.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCC-C-C---------C--CCCCce--EEe
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-P-E---------Q--KLPENV--IAT  190 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l-~-~---------~--~l~~~i--~a~  190 (420)
                      ...+|+|||+|.+|...+..+...|  .+|+++++++++.+.+.+.|.....+ . +         +  .+....  ...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            3679999999999999999999888  78999999987666665543211000 0 0         0  000000  000


Q ss_pred             CCHHHhccCCcEEEEcc--ChhhHHHH-HHHhhhcCCCCCeEEEec
Q 014700          191 TDAKTALLGADYCLHAM--PVQFSSSF-LEGISDYVDPGLPFISLS  233 (420)
Q Consensus       191 td~~eal~~aDiVIlaV--p~~~l~~v-l~~i~~~l~~~~iVVs~s  233 (420)
                      ..+++.++++|+||.++  |......+ .++....++++.+||.+.
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence            11566778999999998  42111111 133344567888888876

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.46  E-value=0.00029  Score=67.63  Aligned_cols=149  Identities=12%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|+|+ |.||..++..+.+.. +++|. +++++++...     +.....+-+. .+.++.+++|+++++.++|+||
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~-~~elva~~d~~~~~~~-----g~d~~~~~g~-~~~~v~~~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSSLL-----GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVFI   77 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCTTC-----SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCchhhh-----hhhHHHHcCC-CcCCceecCCHHHHhcCCCEEE
Confidence            479999998 999999999887543 37777 6676643210     1110000010 0123455678888788899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~  284 (420)
                      -++++....+.+.....   .+..+|..+.|+..+.    .+.+.+.-.    ...++..|++...+..           
T Consensus        78 Dft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~----~~~L~~~a~----~~~vv~a~N~siGvn~-----------  135 (273)
T 1dih_A           78 DFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAG----KQAIRDAAA----DIAIVFAANFSVGVNV-----------  135 (273)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHH----HHHHHHHTT----TSCEEECSCCCHHHHH-----------
T ss_pred             EcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHH----HHHHHHhcC----CCCEEEEecCcHHHHH-----------
Confidence            66665555555554443   4556666566876542    233333321    2346778877654211           


Q ss_pred             CHHHHHHHHHHHhcCCceEEE
Q 014700          285 DRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       285 d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      --+.++.+.+.|. .++.+.+
T Consensus       136 ~~~l~~~aa~~~~-~~~diei  155 (273)
T 1dih_A          136 MLKLLEKAAKVMG-DYTDIEI  155 (273)
T ss_dssp             HHHHHHHHHHHHT-TTSEEEE
T ss_pred             HHHHHHHHHHhcC-CCCCEEE
Confidence            1245667777775 2455443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.46  E-value=0.00046  Score=68.08  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=61.8

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--CcE
Q 014700          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~-alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aDi  202 (420)
                      ++||+|||+|.||. ..+..|.+.. +.+|. +++++  ..+.+.+....          .++.+++|+++++.+  .|+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~--~~~~~a~~~~~----------~~~~~~~~~~~ll~~~~~D~   68 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRE-TLEVKTIFDLH--VNEKAAAPFKE----------KGVNFTADLNELLTDPEIEL   68 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECTT--CCHHHHHHHHT----------TTCEEESCTHHHHSCTTCCE
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCC-CeEEEEEECCC--HHHHHHHhhCC----------CCCeEECCHHHHhcCCCCCE
Confidence            46999999999998 5666665542 26775 67777  23344332100          134667889998775  899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.....   .++.|+ +-|.+.
T Consensus        69 V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a   99 (349)
T 3i23_A           69 ITICTPAHTHYDLAKQAIL---AGKSVI-VEKPFC   99 (349)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEEeCCcHHHHHHHHHHHH---cCCEEE-EECCCc
Confidence            9999998877666655443   455554 356554

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.46  E-value=0.00078  Score=65.08  Aligned_cols=105  Identities=14%  Similarity=0.093  Sum_probs=72.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ..+||+|+|+ |.||..++..|.+.|  +++ ++..++...      +.  .       ..++.+..+++++.+  ++|+
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g--~~~-v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~~Dv   67 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYG--TKI-VAGVTPGKG------GM--E-------VLGVPVYDTVKEAVAHHEVDA   67 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TC--E-------ETTEEEESSHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcC--CeE-EEEECCCCC------Cc--e-------ECCEEeeCCHHHHhhcCCCCE
Confidence            3579999998 999999999999887  774 344443210      00  0       124677788888877  8999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                      +++++|.....+++++.... . -..+|.++.|+..+..+.+.+..++
T Consensus        68 ~Ii~vp~~~~~~~~~ea~~~-G-i~~vVi~t~G~~~~~~~~l~~~a~~  113 (288)
T 1oi7_A           68 SIIFVPAPAAADAALEAAHA-G-IPLIVLITEGIPTLDMVRAVEEIKA  113 (288)
T ss_dssp             EEECCCHHHHHHHHHHHHHT-T-CSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999998888887653 1 1235667788875433344444433

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.44  E-value=0.00051  Score=67.94  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhcC------CCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--C
Q 014700          129 KVVVLGGGSFGTAMAAHVANKK------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G  199 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG------~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~  199 (420)
                      ||||||+|.||..-+..+....      .+.+|. ++|++++.++++.+....            .++++|.++++.  +
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~------------~~~y~d~~ell~~~~   94 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF------------EKATADWRALIADPE   94 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC------------SEEESCHHHHHHCTT
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC------------CeecCCHHHHhcCCC
Confidence            7999999999997776654321      014555 778999888887765211            146779998875  5


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      .|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        95 iDaV~IatP~~~H~~~a~~al~---aGkhVl-~EKPla~  129 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALE---AGKHVW-CEKPMAP  129 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSCS
T ss_pred             CcEEEECCChHHHHHHHHHHHh---cCCeEE-EccCCcc
Confidence            7999999998887766655544   355444 5676654

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.43  E-value=0.00036  Score=69.54  Aligned_cols=95  Identities=15%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCeEEEEc-ccHHHHH-HH----HHHHhcCCCCeE----------EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe
Q 014700          127 TNKVVVLG-GGSFGTA-MA----AHVANKKSQLKV----------YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT  190 (420)
Q Consensus       127 ~mkI~IIG-aGamG~a-lA----~~La~aG~~~~V----------~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~  190 (420)
                      .+||+||| +|.||.. .+    ..+.+.+ +..+          .+++++++.++.+.+....         +   .++
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~-~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~---------~---~~~   72 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQG-GVRLKNGDRIMPDPILVGRSAEKVEALAKRFNI---------A---RWT   72 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHT-SEECTTSCEEEEEEEEECSSSHHHHHHHHHTTC---------C---CEE
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcC-ceeecCCcccceeeEEEcCCHHHHHHHHHHhCC---------C---ccc
Confidence            46999999 9999998 66    6666654 1222          3899999988888764210         0   356


Q ss_pred             CCHHHhccC--CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          191 TDAKTALLG--ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       191 td~~eal~~--aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|+++++.+  .|+|++|+|.....+++....   +.++.|+ +-|.+..
T Consensus        73 ~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~-~EKP~a~  118 (383)
T 3oqb_A           73 TDLDAALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVY-CEKPIAT  118 (383)
T ss_dssp             SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEE-ECSCSCS
T ss_pred             CCHHHHhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEE-EcCCCCC
Confidence            789988754  899999999876666554443   3456655 5675543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.42  E-value=0.00033  Score=70.18  Aligned_cols=111  Identities=11%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             chhhcCCCeEEEEc-ccHHHHHHHHHHHhcCCC---CeEEEEeCCHH----HHH--HHHHhcCCCCCCCCCCCCCceEEe
Q 014700          121 TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQ---LKVYMLMRDPA----VCQ--SINEKHCNCRYFPEQKLPENVIAT  190 (420)
Q Consensus       121 ~~~~~~~mkI~IIG-aGamG~alA~~La~aG~~---~~V~l~~r~~~----~~~--~i~~~g~~~~~l~~~~l~~~i~a~  190 (420)
                      .+.|...+||+|+| +|.+|.+++..|+..+.-   ..|.+.+.+.+    .++  .+--.+..      ..+..++.+.
T Consensus        26 ~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~------~p~~~~v~i~   99 (375)
T 7mdh_A           26 TKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL------YPLLREVSIG   99 (375)
T ss_dssp             ---CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT------CTTEEEEEEE
T ss_pred             HhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh------hhhcCCcEEe
Confidence            34566678999999 799999999999987631   12666544322    121  11111211      1122345666


Q ss_pred             CCHHHhccCCcEEEEcc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          191 TDAKTALLGADYCLHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       191 td~~eal~~aDiVIlaV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++..+++++||+||++-  |-              ..++++.+.|.++..++.+|+.++|-++
T Consensus       100 ~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD  162 (375)
T 7mdh_A          100 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  162 (375)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence            77777899999999963  21              1244455556665567888888888543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.38  E-value=0.0005  Score=64.87  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +|||.|.|+|.+|..++..|.+.|  ++|++++|+++..+.+...+..... .+         .+|++  +.++|+||.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~D---------~~d~~--~~~~d~vi~~   70 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNPDQMEAIRASGAEPLL-WP---------GEEPS--LDGVTHLLIS   70 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHHHTTEEEEE-SS---------SSCCC--CTTCCEEEEC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHhhCCCeEEE-ec---------ccccc--cCCCCEEEEC
Confidence            689999999999999999999998  9999999998877766654321100 00         01222  6789999998


Q ss_pred             cC
Q 014700          207 MP  208 (420)
Q Consensus       207 Vp  208 (420)
                      ..
T Consensus        71 a~   72 (286)
T 3ius_A           71 TA   72 (286)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.37  E-value=0.0019  Score=62.63  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      ....+|+|+|+ |.||..++..|.+.|  ++ .++..++...      +.  .      + .++.+..+++++.+  ++|
T Consensus        11 ~~~~~v~V~Gasg~~G~~~~~~l~~~g--~~-~V~~VnP~~~------g~--~------i-~G~~vy~sl~el~~~~~~D   72 (294)
T 2yv1_A           11 DENTKAIVQGITGRQGSFHTKKMLECG--TK-IVGGVTPGKG------GQ--N------V-HGVPVFDTVKEAVKETDAN   72 (294)
T ss_dssp             CTTCCEEEETTTSHHHHHHHHHHHHTT--CC-EEEEECTTCT------TC--E------E-TTEEEESSHHHHHHHHCCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHhCC--Ce-EEEEeCCCCC------Cc--e------E-CCEeeeCCHHHHhhcCCCC
Confidence            34568999998 999999999999887  67 4555554310      00  0      0 14677788988877  899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                      ++++++|.....+++++.... . -..+|.++.|+..+..+.+.+..++
T Consensus        73 v~ii~vp~~~~~~~v~ea~~~-G-i~~vVi~t~G~~~~~~~~l~~~A~~  119 (294)
T 2yv1_A           73 ASVIFVPAPFAKDAVFEAIDA-G-IELIVVITEHIPVHDTMEFVNYAED  119 (294)
T ss_dssp             EEEECCCHHHHHHHHHHHHHT-T-CSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred             EEEEccCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999998888887653 1 1235667888875433344444443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.35  E-value=0.00051  Score=70.09  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhc-CCCCeE-EEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-
Q 014700          126 RTNKVVVLGG----GSFGTAMAAHVANK-KSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-  198 (420)
Q Consensus       126 ~~mkI~IIGa----GamG~alA~~La~a-G~~~~V-~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-  198 (420)
                      .++||+|||+    |.||..++..|.+. . +.+| .+++++++.++.+.+...         .+ .+.+.+|+++++. 
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g---------~~-~~~~~~~~~~ll~~   87 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSS-QFQITALYSPKIETSIATIQRLK---------LS-NATAFPTLESFASS   87 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTT-TEEEEEEECSSHHHHHHHHHHTT---------CT-TCEEESSHHHHHHC
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCC-CeEEEEEEeCCHHHHHHHHHHcC---------CC-cceeeCCHHHHhcC
Confidence            3579999999    99999999999886 3 2676 478999988877766421         01 2356778998875 


Q ss_pred             -CCcEEEEccChhhHHHHHHHhh
Q 014700          199 -GADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       199 -~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                       +.|+|++|+|.....+++....
T Consensus        88 ~~vD~V~i~tp~~~H~~~~~~al  110 (438)
T 3btv_A           88 STIDMIVIAIQVASHYEVVMPLL  110 (438)
T ss_dssp             SSCSEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHH
Confidence             6899999999877666655443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.35  E-value=0.00065  Score=67.29  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC--Cc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~--aD  201 (420)
                      +++||+|||+|.||.. .+..|.+.. +.+|. +++++++.   +.+.     +       ..+.+++|+++++.+  .|
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~---~~~~-----~-------~~~~~~~~~~~ll~~~~vD   67 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNP-HFELYKIVERSKEL---SKER-----Y-------PQASIVRSFKELTEDPEID   67 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCT-TEEEEEEECSSCCG---GGTT-----C-------TTSEEESCSHHHHTCTTCC
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHH---HHHh-----C-------CCCceECCHHHHhcCCCCC
Confidence            4579999999999997 677776652 26765 67888653   1111     0       134667889998875  89


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +|++|+|.....+++.....   .++-|+ +-|.+.
T Consensus        68 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a   99 (362)
T 3fhl_A           68 LIVVNTPDNTHYEYAGMALE---AGKNVV-VEKPFT   99 (362)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEEeCChHHHHHHHHHHHH---CCCeEE-EecCCC
Confidence            99999998877666655443   355544 455554

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.34  E-value=0.0003  Score=67.52  Aligned_cols=95  Identities=12%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .+++.|+|+|.+|.+++..|++.|. .+|++++|+.++++++.+....          ..+.+. +.++.. .++|+||-
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~----------~~~~~~-~~~~l~~~~~DivIn  187 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGP-SELVIANRDMAKALALRNELDH----------SRLRIS-RYEALEGQSFDIVVN  187 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHCC----------TTEEEE-CSGGGTTCCCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhcc----------CCeeEe-eHHHhcccCCCEEEE
Confidence            5799999999999999999999882 3999999999998888764211          012222 222321 68999999


Q ss_pred             ccChhhHHHHHHHh-hhcCCCCCeEEEecc
Q 014700          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (420)
Q Consensus       206 aVp~~~l~~vl~~i-~~~l~~~~iVVs~sn  234 (420)
                      |+|.....+.. .+ ...++++.+|+.+.-
T Consensus       188 aTp~gm~~~~~-~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          188 ATSASLTADLP-PLPADVLGEAALAYELAY  216 (272)
T ss_dssp             CSSGGGGTCCC-CCCGGGGTTCSEEEESSC
T ss_pred             CCCCCCCCCCC-CCCHHHhCcCCEEEEeec
Confidence            99964311100 01 234567888888753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.33  E-value=0.00029  Score=67.93  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~aDiV  203 (420)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+.++++.+.+.-.. . .++    ..+...+  ++++.+.++|+|
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~~~~a~~la~~~~~-~-~~~----~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLDTSRAQALADVINN-A-VGR----EAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSHHHHHHHHHHHHH-H-HTS----CCEEEECSTTHHHHHHHSSEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHh-h-cCC----ceEEEcCHHHHHHHHhcCCEE
Confidence            579999999999999999999998  5 799999999887776543100 0 000    1233333  677778899999


Q ss_pred             EEccChhhHHHHHHHh-hhcCCCCCeEEEec
Q 014700          204 LHAMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i-~~~l~~~~iVVs~s  233 (420)
                      |-|+|..-...--..+ ...++++.+|+.+.
T Consensus       199 InaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFDVSCLTKDHWVGDVV  229 (283)
T ss_dssp             EECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred             EECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence            9999953211000001 23466777777765

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.33  E-value=0.00038  Score=67.80  Aligned_cols=93  Identities=16%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-------
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-------  197 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-------  197 (420)
                      |+||+|||+ |.||...+..|.+.+  .++. ++|++++.. .+.+.      .      ....+.++.++.+       
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~------~------~~~~~~~~~~~ll~~~~~l~   67 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVG--GVLVASLDPATNVG-LVDSF------F------PEAEFFTEPEAFEAYLEDLR   67 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT------C------TTCEEESCHHHHHHHHHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh------C------CCCceeCCHHHHHHHhhhhc
Confidence            689999999 789999999998876  5554 678877541 11111      1      1346677888776       


Q ss_pred             ---cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          198 ---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       198 ---~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                         .+.|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        68 ~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  107 (312)
T 3o9z_A           68 DRGEGVDYLSIASPNHLHYPQIRMALR---LGANAL-SEKPLVL  107 (312)
T ss_dssp             HTTCCCSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             ccCCCCcEEEECCCchhhHHHHHHHHH---CCCeEE-EECCCCC
Confidence               578999999999887776665544   355554 5665544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00073  Score=69.71  Aligned_cols=82  Identities=18%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ++||.|+|+|.+|.+++..|++.+ +++|++++|+.++++.+.+.. .....   .+  .+.-..++.++++++|+||.|
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~-g~~V~v~~R~~~ka~~la~~~-~~~~~---~~--D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAAND-DINVTVACRTLANAQALAKPS-GSKAI---SL--DVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTST-TEEEEEEESSHHHHHHHHGGG-TCEEE---EC--CTTCHHHHHHHHHTSSEEEEC
T ss_pred             CCEEEEECChHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhc-CCcEE---EE--ecCCHHHHHHHHcCCCEEEEC
Confidence            679999999999999999999983 289999999999888876531 11000   00  000001344567799999999


Q ss_pred             cChhhHHHH
Q 014700          207 MPVQFSSSF  215 (420)
Q Consensus       207 Vp~~~l~~v  215 (420)
                      +|......+
T Consensus        96 tp~~~~~~v  104 (467)
T 2axq_A           96 IPYTFHPNV  104 (467)
T ss_dssp             SCGGGHHHH
T ss_pred             CchhhhHHH
Confidence            997643333

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.30  E-value=0.002  Score=60.84  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC  203 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiV  203 (420)
                      |||+|+|+ |.||..++..+.+. +  ++|... ++.                             +|+++.+. ++|+|
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~--~elva~~d~~-----------------------------~dl~~~~~~~~Dvv   49 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADD--LTLSAELDAG-----------------------------DPLSLLTDGNTEVV   49 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTT--CEEEEEECTT-----------------------------CCTHHHHHTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEccC-----------------------------CCHHHHhccCCcEE
Confidence            69999997 99999999998865 5  888744 442                             13444443 78999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      |-++.+..+.+.++....   .+..+|..+.|+..+....+.+..++.     ....++..|++.-.
T Consensus        50 IDfT~p~a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~-----~~~~vv~a~N~siG  108 (245)
T 1p9l_A           50 IDFTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAK-----PNTSVLIAPNFAIG  108 (245)
T ss_dssp             EECSCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTS-----TTCEEEECSCCCHH
T ss_pred             EEccChHHHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhC-----CCCCEEEECCccHH
Confidence            977777776666655443   356666667787764332222222111     12456778887653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.30  E-value=0.00028  Score=71.41  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-CCCceEEeCCHHHhccC--CcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLG--ADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-l~~~i~a~td~~eal~~--aDi  202 (420)
                      |+||+|+|+|.+|..++..|++.|.- .+|.+++|+.++++.+.+.-... .-+... ....+.-..++++++++  +|+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~-~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAK-GYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHT-TCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhh-cCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            47999999999999999999998711 28999999999887776531100 000000 00000001234455555  899


Q ss_pred             EEEccChhhHHHHHHHh
Q 014700          203 CLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i  219 (420)
                      ||.+.+......+++..
T Consensus        80 Vin~ag~~~~~~v~~a~   96 (405)
T 4ina_A           80 VLNIALPYQDLTIMEAC   96 (405)
T ss_dssp             EEECSCGGGHHHHHHHH
T ss_pred             EEECCCcccChHHHHHH
Confidence            99999976555555443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.29  E-value=0.00031  Score=64.03  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CCe-EEEEcc-cHHHHHHHHHHH-hcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNK-VVVLGG-GSFGTAMAAHVA-NKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mk-I~IIGa-GamG~alA~~La-~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ||| |.|.|+ |.+|.+++..|+ +.|  ++|++++|+++ .++.+.+.+.....+..     .+.-..+++++++++|+
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTD--MHITLYGRQLKTRIPPEIIDHERVTVIEG-----SFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCC--CEEEEEESSHHHHSCHHHHTSTTEEEEEC-----CTTCHHHHHHHHTTCSE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCC--ceEEEEecCccccchhhccCCCceEEEEC-----CCCCHHHHHHHHcCCCE
Confidence            345 999995 999999999999 788  99999999988 76665422211111100     00001134456789999


Q ss_pred             EEEccCh
Q 014700          203 CLHAMPV  209 (420)
Q Consensus       203 VIlaVp~  209 (420)
                      ||.+...
T Consensus        77 vv~~ag~   83 (221)
T 3r6d_A           77 VFVGAME   83 (221)
T ss_dssp             EEESCCC
T ss_pred             EEEcCCC
Confidence            9998864

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.29  E-value=0.00043  Score=67.61  Aligned_cols=93  Identities=14%  Similarity=0.071  Sum_probs=64.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-------
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-------  197 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-------  197 (420)
                      |+||+|||+ |.||...+..|.+.+  .++. +++++++.. .+.+.      .      ....+.+|.++.+       
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~------~------~~~~~~~~~~~ll~~~~~l~   67 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTG--NCLVSAYDINDSVG-IIDSI------S------PQSEFFTEFEFFLDHASNLK   67 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT------C------TTCEEESSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh------C------CCCcEECCHHHHHHhhhhhh
Confidence            689999999 789999999998876  5555 678876531 11111      1      1346677888765       


Q ss_pred             ----cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          198 ----LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       198 ----~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                          .+.|+|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        68 ~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  108 (318)
T 3oa2_A           68 RDSATALDYVSICSPNYLHYPHIAAGLR---LGCDVI-CEKPLVP  108 (318)
T ss_dssp             TSTTTSCCEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCCS
T ss_pred             hccCCCCcEEEECCCcHHHHHHHHHHHH---CCCeEE-EECCCcC
Confidence                568999999999887776665544   355544 4565543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.29  E-value=0.0021  Score=62.59  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHH----HHHhcCCCCCCCCCCCCCceEEeCC-HHHhccC
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQS----INEKHCNCRYFPEQKLPENVIATTD-AKTALLG  199 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r--~~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td-~~eal~~  199 (420)
                      |||+|+|+ |.+|.+++..|+..+...++.++|+  ++++++.    +....  . +.+   .+..+...+| +.+++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~--~-~~~---~~~~i~~~~d~l~~al~g   74 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL--A-GTR---SDANIYVESDENLRIIDE   74 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH--T-TSC---CCCEEEEEETTCGGGGTT
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH--H-hcC---CCeEEEeCCcchHHHhCC
Confidence            69999999 9999999999998773346899999  7653322    22210  0 110   1112333332 5678999


Q ss_pred             CcEEEEcc--Ch--------------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          200 ADYCLHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       200 aDiVIlaV--p~--------------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+||++.  |.              ..++++++.+..+-  +.+|+..+|.+
T Consensus        75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv  125 (313)
T 1hye_A           75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPV  125 (313)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSH
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcH
Confidence            99999875  21              12445556666554  66777778744

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.28  E-value=0.00058  Score=67.50  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|..|+.+|..|+..|. -+++++|++.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence            5799999999999999999999995 5899998763

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.27  E-value=0.0028  Score=61.48  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=71.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--C-Cc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G-AD  201 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~-aD  201 (420)
                      ...+|.|+|+ |.||..+...|.+.|  ++ .++..++...      +.  .       ..++.+..+++++.+  + +|
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~g--~~-~v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~~~D   73 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEYG--TK-VVAGVTPGKG------GS--E-------VHGVPVYDSVKEALAEHPEIN   73 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TC--E-------ETTEEEESSHHHHHHHCTTCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCC--Cc-EEEEeCCCCC------Cc--e-------ECCEeeeCCHHHHhhcCCCCC
Confidence            3568888898 999999999999887  77 4455444310      00  0       014677788888765  5 99


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                      ++++++|.....+++++.... . -..+|.++.|+..+..+.+.+..++
T Consensus        74 vaIi~vp~~~~~~~v~ea~~~-G-i~~vVi~t~G~~~~~~~~l~~~A~~  120 (297)
T 2yv2_A           74 TSIVFVPAPFAPDAVYEAVDA-G-IRLVVVITEGIPVHDTMRFVNYARQ  120 (297)
T ss_dssp             EEEECCCGGGHHHHHHHHHHT-T-CSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999999988887663 1 1235667889875433344444443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.26  E-value=0.00065  Score=70.18  Aligned_cols=91  Identities=13%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++++|+|+|.+|.++|..|+..|  .+|+++++++...+.....+.              . ..++++++..+|+++.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~~~~a~~Aa~~g~--------------d-v~~lee~~~~aDvVi~  326 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEIDPICALQATMEGL--------------Q-VLTLEDVVSEADIFVT  326 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------E-ECCGGGTTTTCSEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHhCC--------------c-cCCHHHHHHhcCEEEe
Confidence            4579999999999999999999998  899999999877665555431              1 2366777889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +.....+-  -++....++++.+|+++..+
T Consensus       327 atG~~~vl--~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          327 TTGNKDII--MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CSSCSCSB--CHHHHTTSCTTEEEEESSST
T ss_pred             CCCChhhh--hHHHHHhcCCCeEEEEcCCC
Confidence            87643310  11234556788888887654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.25  E-value=0.00024  Score=68.11  Aligned_cols=90  Identities=19%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.+|.+++..|++.|  .+|++++|+.++++.+.+.+.              .+. +.++ +.++|+||-|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~~ka~~la~~~~--------------~~~-~~~~-l~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSSRGLDFFQRLGC--------------DCF-MEPP-KSAFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHHHHTC--------------EEE-SSCC-SSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCC--------------eEe-cHHH-hccCCEEEEc
Confidence            679999999999999999999998  899999999988888773221              111 2223 3489999999


Q ss_pred             cChhhHH-HHH--HHhhhcCCCCCeEEEecc
Q 014700          207 MPVQFSS-SFL--EGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l~-~vl--~~i~~~l~~~~iVVs~sn  234 (420)
                      +|..... ..+  +.+...++++.+++++.-
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence            9853100 000  111113446788888864

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.23  E-value=0.0013  Score=64.98  Aligned_cols=102  Identities=20%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCe-----EEEEeCCH--HHH----HHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLK-----VYMLMRDP--AVC----QSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~-----V~l~~r~~--~~~----~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      .+||+|+| +|.+|++++..|+..+.-.+     +.++|+++  +.+    ..+..  ...      .+...+...++..
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--~~~------~~~~~~~~~~~~~   74 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--CAL------PLLKDVIATDKEE   74 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--TCC------TTEEEEEEESCHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--hhh------cccCCEEEcCCcH
Confidence            47999999 79999999999998763114     99999964  222    22222  111      1112456667777


Q ss_pred             HhccCCcEEEEcc--C---h-----------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TALLGADYCLHAM--P---V-----------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal~~aDiVIlaV--p---~-----------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +++++||+||++-  |   .           ..++++++.+..+-+++..++.++|-.
T Consensus        75 ~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPv  132 (333)
T 5mdh_A           75 IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPA  132 (333)
T ss_dssp             HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCch
Confidence            7899999999974  2   1           125566667766654444577778744

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.21  E-value=0.00044  Score=68.83  Aligned_cols=96  Identities=19%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--eCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td~~eal~~aDiVI  204 (420)
                      .++|.|+|+|.+|.+++..+...|  .+|++++|++++.+.+.+.+...  .       ....  ..++.+.+.++|+||
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSR--V-------ELLYSNSAEIETAVAEADLLI  235 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGG--S-------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCce--e-------EeeeCCHHHHHHHHcCCCEEE
Confidence            379999999999999999999988  79999999999888776654210  0       0000  113445677899999


Q ss_pred             EccChhhH--HH-HHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFS--SS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l--~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      -|++....  .. +.+.....++++..|+.+.
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            99964320  00 0122334566788888764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.19  E-value=0.00062  Score=64.27  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHHhc--CCCCCCCCCCC--
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEKH--CNCRYFPEQKL--  183 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-------------------~~~~~i~~~g--~~~~~l~~~~l--  183 (420)
                      .++|.|||+|.+|+.++..|++.|. .+++++|++.                   .+++.+.+.-  .+    |...+  
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~~v~~  105 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN----PHIAITP  105 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----TTSEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC----CCcEEEE
Confidence            4799999999999999999999983 3899999986                   4554443220  11    11110  


Q ss_pred             -CCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHh
Q 014700          184 -PENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       184 -~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i  219 (420)
                       +..+. ..+.++.++++|+||.|+.....+..+.+.
T Consensus       106 ~~~~~~-~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~  141 (249)
T 1jw9_B          106 VNALLD-DAELAALIAEHDLVLDCTDNVAVRNQLNAG  141 (249)
T ss_dssp             ECSCCC-HHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred             EeccCC-HhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence             00010 012345567899999999876665555554

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.17  E-value=0.00068  Score=66.50  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=61.0

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc---CCc
Q 014700          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~-alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~---~aD  201 (420)
                      ++||+|||+|.||. ..+..|.+.. +.+|. +++++++.                    .++...+|+++++.   +.|
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~-~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD   83 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNA-NFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSID   83 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCT-TEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCC
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCC-CeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCC
Confidence            46999999999998 7888888753 26665 56776431                    13456778988765   489


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        84 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a~  116 (330)
T 4ew6_A           84 AVSLCMPPQYRYEAAYKALV---AGKHVF-LEKPPGA  116 (330)
T ss_dssp             EEEECSCHHHHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             EEEEeCCcHHHHHHHHHHHH---cCCcEE-EeCCCCC
Confidence            99999998877666655543   455554 5665543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.17  E-value=0.00068  Score=66.80  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=56.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHh-cCCCC-CCCCCC--C-CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCR-YFPEQK--L-PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~-g~~~~-~l~~~~--l-~~~i~a~td~~eal~~a  200 (420)
                      ++||+|+|+|.||..++..|.+.. +.+|. +.+++++.+..+.+. |.... .+++..  + ...+.+..++++.+.++
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCC
Confidence            469999999999999999998764 25655 457776665554432 21100 000000  0 00113345788877899


Q ss_pred             cEEEEccChhhHHHHHHH
Q 014700          201 DYCLHAMPVQFSSSFLEG  218 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~  218 (420)
                      |+|++|+|.....+....
T Consensus        81 DvV~~aTp~~~h~~~a~~   98 (334)
T 2czc_A           81 DIIVDATPGGIGAKNKPL   98 (334)
T ss_dssp             SEEEECCSTTHHHHHHHH
T ss_pred             CEEEECCCccccHHHHHH
Confidence            999999998765454443

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.15  E-value=0.00091  Score=65.36  Aligned_cols=95  Identities=18%  Similarity=0.252  Sum_probs=59.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHH-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----c
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----L  198 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~  198 (420)
                      .++||+|||+|.||..++..|.++..+.++. +++++++. .+.+.+.... .           ...++.++.+     .
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~-~-----------~~~~~~e~ll~~~~~~   70 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGV-T-----------TTYAGVEGLIKLPEFA   70 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTC-C-----------EESSHHHHHHHSGGGG
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCC-C-----------cccCCHHHHHhccCCC
Confidence            4579999999999999999996621124544 57888665 4454432110 0           1223555553     3


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +.|+||+|+|.....+........ ++++.|++..
T Consensus        71 ~iDvV~~atp~~~h~~~a~~al~a-~~Gk~Vi~ek  104 (312)
T 1nvm_B           71 DIDFVFDATSASAHVQNEALLRQA-KPGIRLIDLT  104 (312)
T ss_dssp             GEEEEEECSCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             CCcEEEECCChHHHHHHHHHHHHh-CCCCEEEEcC
Confidence            589999999987766666555432 1366676543

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.14  E-value=0.0018  Score=66.31  Aligned_cols=94  Identities=13%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~a--------G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      |+..+||+|||+|.||..++..|.++        |.+.+|. +++|+++..+.+..               ....++|++
T Consensus         7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~---------------~~~~~~d~~   71 (444)
T 3mtj_A            7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG---------------GLPLTTNPF   71 (444)
T ss_dssp             SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT---------------TCCEESCTH
T ss_pred             hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc---------------cCcccCCHH
Confidence            44456899999999999999887642        3224555 56788876554421               124567888


Q ss_pred             Hhcc--CCcEEEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          195 TALL--GADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       195 eal~--~aDiVIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +.+.  +.|+|++|+|. ....+++...   ++.++-|++.-++
T Consensus        72 ell~d~diDvVve~tp~~~~h~~~~~~A---L~aGKhVvtenka  112 (444)
T 3mtj_A           72 DVVDDPEIDIVVELIGGLEPARELVMQA---IANGKHVVTANKH  112 (444)
T ss_dssp             HHHTCTTCCEEEECCCSSTTHHHHHHHH---HHTTCEEEECCHH
T ss_pred             HHhcCCCCCEEEEcCCCchHHHHHHHHH---HHcCCEEEECCcc
Confidence            8775  57999999996 5555554333   3357777765553

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.14  E-value=0.00069  Score=66.95  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHHhcCCCCCCCCCCCCCceEEeC--CHHHhccCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~---~~~~~i~~~g~~~~~l~~~~l~~~i~a~t--d~~eal~~a  200 (420)
                      |+||+|+|+ |.+|..+...|.+.. ++++..+..+.   ..-+.+.+.+..   +.+.   ..+.+..  +.++...++
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p-~~el~~l~s~~~~~saGk~~~~~~p~---~~~~---~~~~v~~~~~~~~~~~~~   76 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHP-HMNITALTVSAQSNDAGKLISDLHPQ---LKGI---VELPLQPMSDISEFSPGV   76 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTSBHHHHCGG---GTTT---CCCBEEEESSGGGTCTTC
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCC-CCcEEEEEecCchhhcCCchHHhCcc---ccCc---cceeEeccCCHHHHhcCC
Confidence            579999995 999999999998853 36777664332   221223222110   1111   0112221  444533899


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+||+|+|.....++...+..   .+..||+++.-.
T Consensus        77 Dvvf~a~p~~~s~~~~~~~~~---~g~~vIDlSa~f  109 (337)
T 3dr3_A           77 DVVFLATAHEVSHDLAPQFLE---AGCVVFDLSGAF  109 (337)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred             CEEEECCChHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence            999999998887777766543   578899887643

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.12  E-value=0.00091  Score=64.06  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.+|.+++..|.+.|. .+|++++|+.++++.+.+.- .            .....++.  +.++|+||-|
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~-~~i~v~nRt~~ka~~la~~~-~------------~~~~~~~~--~~~~DivIna  182 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALY-G------------YAYINSLE--NQQADILVNV  182 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHH-T------------CEEESCCT--TCCCSEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHc-C------------Cccchhhh--cccCCEEEEC
Confidence            4789999999999999999999882 38999999998888887541 0            01111222  4679999999


Q ss_pred             cChh
Q 014700          207 MPVQ  210 (420)
Q Consensus       207 Vp~~  210 (420)
                      +|..
T Consensus       183 Tp~g  186 (271)
T 1npy_A          183 TSIG  186 (271)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            9964

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.11  E-value=0.0011  Score=66.26  Aligned_cols=88  Identities=10%  Similarity=0.013  Sum_probs=59.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVIl  205 (420)
                      .++|+|+|+|+||..+|..|.+.|  .+|+++|++++.++++.+.. .            .... +.++.+. +||+++.
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~G--akVvv~D~~~~~l~~~a~~~-g------------a~~v-~~~~ll~~~~DIvip  236 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEE-G------------ADAV-APNAIYGVTCDIFAP  236 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHH-C------------CEEC-CGGGTTTCCCSEEEE
T ss_pred             cCEEEEECchHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEE-ChHHHhccCCcEeec
Confidence            579999999999999999999998  89999999998877766541 1            1222 3344444 8999998


Q ss_pred             ccChhhH-HHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFS-SSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l-~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |.-...+ .+.++.    + ...+|+..+|+
T Consensus       237 ~a~~~~I~~~~~~~----l-g~~iV~e~An~  262 (364)
T 1leh_A          237 CALGAVLNDFTIPQ----L-KAKVIAGSADN  262 (364)
T ss_dssp             CSCSCCBSTTHHHH----C-CCSEECCSCSC
T ss_pred             cchHHHhCHHHHHh----C-CCcEEEeCCCC
Confidence            8543322 122233    2 23456656664

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.10  E-value=0.00075  Score=66.89  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             cCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      +.++||+|+| .|.+|..+.+.|.+.. +.++..+.+.......+.+.+.   .+.+.   ..+.+ .++++ +.++|+|
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elv~v~s~~~~g~~~~~~~~---~~~g~---~~~~~-~~~~~-~~~vDvV   72 (345)
T 2ozp_A            2 TGKKTLSIVGASGYAGGEFLRLALSHP-YLEVKQVTSRRFAGEPVHFVHP---NLRGR---TNLKF-VPPEK-LEPADIL   72 (345)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHTCT-TEEEEEEBCSTTTTSBGGGTCG---GGTTT---CCCBC-BCGGG-CCCCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEECchhhCchhHHhCc---hhcCc---ccccc-cchhH-hcCCCEE
Confidence            3468999999 5999999999998765 3577766553322111111110   01110   01111 13333 5789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+|+|.....+.+..+.   ..+..||+++.-.
T Consensus        73 ~~a~g~~~s~~~a~~~~---~aG~~VId~Sa~~  102 (345)
T 2ozp_A           73 VLALPHGVFAREFDRYS---ALAPVLVDLSADF  102 (345)
T ss_dssp             EECCCTTHHHHTHHHHH---TTCSEEEECSSTT
T ss_pred             EEcCCcHHHHHHHHHHH---HCCCEEEEcCccc
Confidence            99999887776665543   4577888887533

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.08  E-value=0.00022  Score=65.90  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiV  203 (420)
                      ..+||+|||+|.+|..++..+.... ++++. ++|.++++...         ...+.    ++...+++++.++ +.|+|
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~---------~i~gv----~V~~~~dl~ell~~~ID~V  144 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR---------PVRGG----VIEHVDLLPQRVPGRIEIA  144 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC---------EETTE----EEEEGGGHHHHSTTTCCEE
T ss_pred             CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh---------hhcCC----eeecHHhHHHHHHcCCCEE
Confidence            3479999999999999998633221 26665 56777753211         01111    2334567888765 58999


Q ss_pred             EEccChhhHHHHHHHhhh
Q 014700          204 LHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~  221 (420)
                      ++|+|+....++++.+..
T Consensus       145 iIA~Ps~~~~ei~~~l~~  162 (211)
T 2dt5_A          145 LLTVPREAAQKAADLLVA  162 (211)
T ss_dssp             EECSCHHHHHHHHHHHHH
T ss_pred             EEeCCchhHHHHHHHHHH
Confidence            999998887777777654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.08  E-value=0.00068  Score=69.57  Aligned_cols=74  Identities=15%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eC---CHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TT---DAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~t---d~~eal~~aDi  202 (420)
                      +++|.|+|+|.+|.+++..|++.|  ++|++++|+.++++.+.+..      ++..   .+.. .+   +++++++++|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G--~~V~v~~R~~~~a~~la~~~------~~~~---~~~~Dv~d~~~l~~~l~~~Dv   71 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGV------QHST---PISLDVNDDAALDAEVAKHDL   71 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESSHHHHHHTTTTC------TTEE---EEECCTTCHHHHHHHHTTSSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCc--CEEEEEECCHHHHHHHHHhc------CCce---EEEeecCCHHHHHHHHcCCcE
Confidence            578999999999999999999988  89999999988776654321      1000   0000 11   34466788999


Q ss_pred             EEEccChhh
Q 014700          203 CLHAMPVQF  211 (420)
Q Consensus       203 VIlaVp~~~  211 (420)
                      ||.++|...
T Consensus        72 VIn~a~~~~   80 (450)
T 1ff9_A           72 VISLIPYTF   80 (450)
T ss_dssp             EEECCC--C
T ss_pred             EEECCcccc
Confidence            999999643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.07  E-value=0.0019  Score=58.47  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC-CCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~-~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+...+.  .++. ++.-+       +. +++.++|+||.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~--~~~~~D~~d~-------~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQKAADRLGATV--ATLVKEPLVL-------TE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHTCTTS--EEEECCGGGC-------CH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEecccccccccCCCc--eEEecccccc-------cH-hhcccCCEEEE
Confidence            68999997 999999999999998  999999999887665533221  1110 00000       11 55789999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        69 ~ag   71 (224)
T 3h2s_A           69 ALS   71 (224)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.05  E-value=0.00048  Score=67.55  Aligned_cols=97  Identities=8%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ++||+|||+|.+|...+..| ..+  .+|. ++++++ +..+++.+....  +    .+  ...+++|.++++.  +.|+
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~--~~lvav~d~~~~~~~~~~~~~~~~--~----~~--~~~~~~~~~~ll~~~~vD~   70 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEE--CSITGIAPGVPEEDLSKLEKAISE--M----NI--KPKKYNNWWEMLEKEKPDI   70 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTT--EEEEEEECSSTTCCCHHHHHHHHT--T----TC--CCEECSSHHHHHHHHCCSE
T ss_pred             ceEEEEEccchhHHHHHHhc-CCC--cEEEEEecCCchhhHHHHHHHHHH--c----CC--CCcccCCHHHHhcCCCCCE
Confidence            57999999999988777777 444  6766 577776 233333321000  0    00  1256678988875  5899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |++|+|.....+++.....   .++-|+ +-|.+..
T Consensus        71 V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  102 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALE---RKIHAF-VEKPIAT  102 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             EEEeCCcchHHHHHHHHHH---CCCcEE-EeCCCCC
Confidence            9999998877666655443   355444 5676654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.05  E-value=0.0013  Score=60.43  Aligned_cols=71  Identities=17%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||.|.|+ |.+|.+++..|++.|  ++|++++|+++..+.+...+. .. +..++.        .++.++++++|+||
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~-~~~Dl~--------~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQGPELRERGASDI-VVANLE--------EDFSHAFASIDAVV   89 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHTTCSEE-EECCTT--------SCCGGGGTTCSEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHHHHHHHhCCCceE-EEcccH--------HHHHHHHcCCCEEE
Confidence            689999997 999999999999998  999999999988777765432 11 011111        35567788999999


Q ss_pred             EccC
Q 014700          205 HAMP  208 (420)
Q Consensus       205 laVp  208 (420)
                      .+..
T Consensus        90 ~~ag   93 (236)
T 3e8x_A           90 FAAG   93 (236)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8865

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.04  E-value=0.0008  Score=64.89  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||+|.+|.+++..|.+.|  . +|++++|+.++++.+.+.-             ......++++ + ++|+||
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G--~~~v~v~nRt~~ka~~La~~~-------------~~~~~~~l~~-l-~~DivI  183 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNF--AKDIYVVTRNPEKTSEIYGEF-------------KVISYDELSN-L-KGDVII  183 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTT--CSEEEEEESCHHHHHHHCTTS-------------EEEEHHHHTT-C-CCSEEE
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHhc-------------CcccHHHHHh-c-cCCEEE
Confidence            3579999999999999999999988  5 8999999999887776521             1122234444 5 899999


Q ss_pred             EccChhhHHHH--HHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSF--LEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~v--l~~i~~~l~~~~iVVs~s  233 (420)
                      -|+|..-....  ..--...++++.+|+.+.
T Consensus       184 naTp~Gm~~~~~~~pi~~~~l~~~~~v~Dlv  214 (282)
T 3fbt_A          184 NCTPKGMYPKEGESPVDKEVVAKFSSAVDLI  214 (282)
T ss_dssp             ECSSTTSTTSTTCCSSCHHHHTTCSEEEESC
T ss_pred             ECCccCccCCCccCCCCHHHcCCCCEEEEEe
Confidence            99985211000  000112345677777775

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.98  E-value=0.0025  Score=57.29  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||.|+|+ |.+|.+++..|++.|  ++|++++|+++..+.+. .+.  .++..     .  ..+...+++.++|+||.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~-~~~--~~~~~-----D--~~d~~~~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGKITQTH-KDI--NILQK-----D--IFDLTLSDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHHHHHHC-SSS--EEEEC-----C--GGGCCHHHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchhhhhcc-CCC--eEEec-----c--ccChhhhhhcCCCEEEEC
Confidence            79999995 999999999999998  99999999987665543 111  11100     0  000001567889999998


Q ss_pred             cCh
Q 014700          207 MPV  209 (420)
Q Consensus       207 Vp~  209 (420)
                      ...
T Consensus        69 ag~   71 (221)
T 3ew7_A           69 YGI   71 (221)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            753

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.98  E-value=0.0016  Score=64.43  Aligned_cols=91  Identities=15%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHh-cCCCCCCC---CCCC-CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFP---EQKL-PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~-g~~~~~l~---~~~l-~~~i~a~td~~eal~~a  200 (420)
                      ++||+|+|+|.||..+++.|.+.. +.+|. +.+++.+....+... +.. .+.+   ...+ ..++.+..++++...++
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~p-~~elvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~~~~v~v~~~~e~l~~~v   78 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIR-IYVPQQSIKKFEESGIPVAGTVEDLIKTS   78 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCC-EECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred             CeEEEEEecCHHHHHHHHHHHcCC-CCEEEEEEcCChHHHHHHHHhcCcc-eecCcCHHHHhcccccccccCHhHhhcCC
Confidence            359999999999999999998764 35665 456665444333332 211 1100   0000 11233344666655689


Q ss_pred             cEEEEccChhhHHHHHHHh
Q 014700          201 DYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i  219 (420)
                      |+||.|+|.....+..+..
T Consensus        79 DvV~~aTp~~~s~~~a~~~   97 (340)
T 1b7g_O           79 DIVVDTTPNGVGAQYKPIY   97 (340)
T ss_dssp             SEEEECCSTTHHHHHHHHH
T ss_pred             CEEEECCCCchhHHHHHHH
Confidence            9999999987766555443

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.97  E-value=0.0016  Score=63.67  Aligned_cols=72  Identities=25%  Similarity=0.389  Sum_probs=50.5

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCC-------eEEEEeCCH--HHHH----HHHHhcCCCCCCCCCCCCCceEEe
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQL-------KVYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIAT  190 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~-------~V~l~~r~~--~~~~----~i~~~g~~~~~l~~~~l~~~i~a~  190 (420)
                      ...|||.|+|+ |.+|+.++..|...|  +       +|.++|+.+  +..+    .+..  ..      ..+...+...
T Consensus         2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g--~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~--~~------~~~~~di~~~   71 (327)
T 1y7t_A            2 KAPVRVAVTGAAGQIGYSLLFRIAAGE--MLGKDQPVILQLLEIPQAMKALEGVVMELED--CA------FPLLAGLEAT   71 (327)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTT--TTCTTCCEEEEEECCGGGHHHHHHHHHHHHT--TT------CTTEEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCC--CCCCCCCCEEEEEeCCCchhhccchhhhhhc--cc------ccccCCeEec
Confidence            34579999997 999999999999887  4       899999874  2222    2211  10      1111235555


Q ss_pred             CCHHHhccCCcEEEEc
Q 014700          191 TDAKTALLGADYCLHA  206 (420)
Q Consensus       191 td~~eal~~aDiVIla  206 (420)
                      ++..++++++|+||.+
T Consensus        72 ~~~~~a~~~~D~Vih~   87 (327)
T 1y7t_A           72 DDPKVAFKDADYALLV   87 (327)
T ss_dssp             SCHHHHTTTCSEEEEC
T ss_pred             cChHHHhCCCCEEEEC
Confidence            6778889999999986

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.96  E-value=0.0069  Score=58.93  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCCeEEEE-cc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCc
Q 014700          126 RTNKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (420)
Q Consensus       126 ~~mkI~II-Ga-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aD  201 (420)
                      +.++|+|| |+ |.+|...+..|.+.|  ++ .++..++...      +.  +       ..++.+..+++|+.+  +.|
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G--~~-~v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~vD   73 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYG--TN-LVGGTTPGKG------GK--T-------HLGLPVFNTVKEAKEQTGAT   73 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TC--E-------ETTEEEESSHHHHHHHHCCC
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCC--Cc-EEEEeCCCcC------cc--e-------ECCeeeechHHHhhhcCCCC
Confidence            45678888 98 999999999999988  77 3455554310      00  0       014667778888777  899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++++++|.....++++++... . =..+|.++.|+..+
T Consensus        74 ~avI~vP~~~~~~~~~e~i~~-G-i~~iv~~t~G~~~~  109 (305)
T 2fp4_A           74 ASVIYVPPPFAAAAINEAIDA-E-VPLVVCITEGIPQQ  109 (305)
T ss_dssp             EEEECCCHHHHHHHHHHHHHT-T-CSEEEECCCCCCHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCChH
Confidence            999999999999988887653 1 13556678888643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.94  E-value=0.0053  Score=57.08  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.+|..-+..|.++|  .+|++++++. +.++.+.+.+. .....     ..    -+. +.+.++|+||.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~l~~~~~-i~~i~-----~~----~~~-~dL~~adLVIa   97 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVSAEINEWEAKGQ-LRVKR-----KK----VGE-EDLLNVFFIVV   97 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCCHHHHHHHHTTS-CEEEC-----SC----CCG-GGSSSCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHHHcCC-cEEEE-----CC----CCH-hHhCCCCEEEE
Confidence            579999999999999999999998  8999998764 23455554331 11100     00    022 23788999999


Q ss_pred             ccChhhHHHHHHHhh
Q 014700          206 AMPVQFSSSFLEGIS  220 (420)
Q Consensus       206 aVp~~~l~~vl~~i~  220 (420)
                      |+....+...+....
T Consensus        98 AT~d~~~N~~I~~~a  112 (223)
T 3dfz_A           98 ATNDQAVNKFVKQHI  112 (223)
T ss_dssp             CCCCTHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHH
Confidence            998777655554443

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.88  E-value=0.0013  Score=69.49  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.+|..|+.+|. -+++++|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCC
Confidence            4699999999999999999999995 5899998864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.84  E-value=0.001  Score=63.66  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=58.5

Q ss_pred             cCCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      -..+++.|||.|. +|..+|..|.+.|  .+|+++.+..                            .++++.++.||+|
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~g--AtVtv~~~~t----------------------------~~L~~~~~~ADIV  197 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRN--YTVSVCHSKT----------------------------KDIGSMTRSSKIV  197 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHHSSEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------ccHHHhhccCCEE
Confidence            3468999999985 8999999999988  8999987531                            2677888999999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |.+++...+   +.  ..+++++++||++.
T Consensus       198 I~Avg~p~~---I~--~~~vk~GavVIDvg  222 (276)
T 3ngx_A          198 VVAVGRPGF---LN--REMVTPGSVVIDVG  222 (276)
T ss_dssp             EECSSCTTC---BC--GGGCCTTCEEEECC
T ss_pred             EECCCCCcc---cc--HhhccCCcEEEEec
Confidence            999986432   11  35678999999874

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.84  E-value=0.0014  Score=64.12  Aligned_cols=96  Identities=10%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      .++|.|+|+|.+|..++..|.+.|  + |++++++++.++ +.+.+.... ..+..-      ...++++ +++||.+++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~~~-~~~~~~~~i-~gd~~~------~~~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKK-VLRSGANFV-HGDPTR------VSDLEKANVRGARAVIV  183 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGHHH-HHHTTCEEE-ESCTTS------HHHHHHTCSTTEEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhhhh-HHhCCcEEE-EeCCCC------HHHHHhcChhhccEEEE
Confidence            468999999999999999999988  8 999999999888 765432110 000000      0123334 678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +++++...-.+-.....+.++..++.-.
T Consensus       184 ~~~~d~~n~~~~~~ar~~~~~~~iiar~  211 (336)
T 1lnq_A          184 DLESDSETIHCILGIRKIDESVRIIAEA  211 (336)
T ss_dssp             CCSSHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred             cCCccHHHHHHHHHHHHHCCCCeEEEEE
Confidence            9997643322323334445554454443

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.81  E-value=0.0014  Score=62.01  Aligned_cols=84  Identities=8%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .+.|||+++|.|+||..+++.  . +  .++. +|+   +++      +         .+  ++.+++|+++.+.++|+|
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~--leLv~v~~---~k~------g---------el--gv~a~~d~d~lla~pD~V   64 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-N--FEKIYAYD---RIS------K---------DI--PGVVRLDEFQVPSDVSTV   64 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-C--CSEEEEEC---SSC------C---------CC--SSSEECSSCCCCTTCCEE
T ss_pred             cccceEEEECcCHHHHHHHhc--C-C--cEEEEEEe---ccc------c---------cc--CceeeCCHHHHhhCCCEE
Confidence            457999999999999999998  3 5  6665 555   211      1         01  345677888888899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +-|-....+++.+.   +.|..+.-+|.++-|.
T Consensus        65 Ve~A~~~av~e~~~---~iL~aG~dvv~~S~ga   94 (253)
T 1j5p_A           65 VECASPEAVKEYSL---QILKNPVNYIIISTSA   94 (253)
T ss_dssp             EECSCHHHHHHHHH---HHTTSSSEEEECCGGG
T ss_pred             EECCCHHHHHHHHH---HHHHCCCCEEEcChhh
Confidence            99998877766444   4456788888777664

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.77  E-value=0.0017  Score=59.97  Aligned_cols=82  Identities=13%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH--hcCCCCeEE-EEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--C
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G  199 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La--~aG~~~~V~-l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~  199 (420)
                      ...+|+|+|+|++|.+++..+.  ..|  +++. ++|.+++ +.      |.  ..+.+.    .+...+++++.++  +
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g--~~iVg~~D~dp~~ki------G~--~~i~Gv----pV~~~~dL~~~v~~~~  148 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNK--MQISMAFDLDSNDLV------GK--TTEDGI----PVYGISTINDHLIDSD  148 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSS--EEEEEEEECTTSTTT------TC--BCTTCC----BEEEGGGHHHHC-CCS
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCC--eEEEEEEeCCchhcc------Cc--eeECCe----EEeCHHHHHHHHHHcC
Confidence            3468999999999999999842  333  6665 5687775 31      11  011111    2334567777776  4


Q ss_pred             CcEEEEccChhhHHHHHHHhhh
Q 014700          200 ADYCLHAMPVQFSSSFLEGISD  221 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~  221 (420)
                      .|++|+|+|+...+++++.+..
T Consensus       149 Id~vIIAvPs~~aq~v~d~lv~  170 (212)
T 3keo_A          149 IETAILTVPSTEAQEVADILVK  170 (212)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHH
T ss_pred             CCEEEEecCchhHHHHHHHHHH
Confidence            8999999999887788877654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.77  E-value=0.0035  Score=61.30  Aligned_cols=67  Identities=15%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             CCCeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCc
Q 014700          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~--~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aD  201 (420)
                      .+|||.|||.|.+|.+ +|..|.+.|  ++|+++|+.+  ...+.+.+.|..            +..-.++++.. .++|
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~~~~~~L~~~gi~------------v~~g~~~~~l~~~~~d   68 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYPPMSTQLEALGID------------VYEGFDAAQLDEFKAD   68 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCTTHHHHHHHTTCE------------EEESCCGGGGGSCCCS
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCcHHHHHHHhCCCE------------EECCCCHHHcCCCCCC
Confidence            3689999999999995 999999998  9999999864  345566665531            11112444433 4799


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      +||++
T Consensus        69 ~vV~S   73 (326)
T 3eag_A           69 VYVIG   73 (326)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.73  E-value=0.0025  Score=62.33  Aligned_cols=98  Identities=16%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCC---HHHHHHHHHhcCCCCCCCCCCCCCceEE--eCC---HHHhc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIA--TTD---AKTAL  197 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~---~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td---~~eal  197 (420)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+   .++++++.+.-.. . .     ...+.+  .++   +.+.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~~~~~~~a~~la~~~~~-~-~-----~~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDG--VKEISIFNRKDDFYANAEKTVEKINS-K-T-----DCKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECSSTTHHHHHHHHHHHHH-H-S-----SCEEEEEETTCHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECCCchHHHHHHHHHHhhh-h-c-----CCceEEeccchHHHHHhhh
Confidence            579999999999999999999998  6 89999999   7777766543100 0 0     001222  123   34556


Q ss_pred             cCCcEEEEccChhhHHH--HHHH-hhhcCCCCCeEEEec
Q 014700          198 LGADYCLHAMPVQFSSS--FLEG-ISDYVDPGLPFISLS  233 (420)
Q Consensus       198 ~~aDiVIlaVp~~~l~~--vl~~-i~~~l~~~~iVVs~s  233 (420)
                      .++|+||-|+|..-...  ...- ....++++.+|+.+.
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVV  263 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred             cCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence            78999999999532110  0000 123456677777765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.00059  Score=62.09  Aligned_cols=76  Identities=24%  Similarity=0.379  Sum_probs=49.1

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      |+.||||.|.|+ |.+|..++..|.+.|  ++|++++|+++..+.+..   ...++.     ..+.-..+++++++++|+
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~---~~~~~~-----~Dl~d~~~~~~~~~~~d~   70 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKIKIENE---HLKVKK-----ADVSSLDEVCEVCKGADA   70 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGCCCCCT---TEEEEC-----CCTTCHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccchhccC---ceEEEE-----ecCCCHHHHHHHhcCCCE
Confidence            345789999995 999999999999998  999999998764221100   000000     000001134456788999


Q ss_pred             EEEccCh
Q 014700          203 CLHAMPV  209 (420)
Q Consensus       203 VIlaVp~  209 (420)
                      ||.+...
T Consensus        71 vi~~a~~   77 (227)
T 3dhn_A           71 VISAFNP   77 (227)
T ss_dssp             EEECCCC
T ss_pred             EEEeCcC
Confidence            9998753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.71  E-value=0.0019  Score=62.19  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.|. +|.++|..|...|  ..|++..+..                            .++++.++.||+||
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~g--AtVtv~h~~t----------------------------~~L~~~~~~ADIVI  208 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLII  208 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhhcCCEEE
Confidence            468999999887 7999999999988  8999987531                            16778899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +  -..+++++++||++.
T Consensus       209 ~Avg~p~~---I--~~~~vk~GavVIDVg  232 (285)
T 3p2o_A          209 VAAGCVNL---L--RSDMVKEGVIVVDVG  232 (285)
T ss_dssp             ECSSCTTC---B--CGGGSCTTEEEEECC
T ss_pred             ECCCCCCc---C--CHHHcCCCeEEEEec
Confidence            99985432   1  135678899998873

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.70  E-value=0.0016  Score=54.92  Aligned_cols=87  Identities=14%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|+|||+    +.+|..+...|.+.|  ++|+.++...+.   +                .+..+..++++.-. .|+
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g--~~V~pVnP~~~~---i----------------~G~~~y~sl~dlp~-vDl   61 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHG--HEFIPVGRKKGE---V----------------LGKTIINERPVIEG-VDT   61 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHT--CCEEEESSSCSE---E----------------TTEECBCSCCCCTT-CCE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCC--CeEEEECCCCCc---C----------------CCeeccCChHHCCC-CCE
Confidence            578999998    679999999999998  888887764321   1                12344456666434 899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +++++|...+.++++++... ....  |.++.|+..
T Consensus        62 avi~~p~~~v~~~v~e~~~~-g~k~--v~~~~G~~~   94 (122)
T 3ff4_A           62 VTLYINPQNQLSEYNYILSL-KPKR--VIFNPGTEN   94 (122)
T ss_dssp             EEECSCHHHHGGGHHHHHHH-CCSE--EEECTTCCC
T ss_pred             EEEEeCHHHHHHHHHHHHhc-CCCE--EEECCCCCh
Confidence            99999999999999887654 2222  346778864

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.69  E-value=0.0016  Score=63.21  Aligned_cols=73  Identities=19%  Similarity=0.315  Sum_probs=57.1

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH--HhccCCcE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK--TALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~--eal~~aDi  202 (420)
                      ..+++.|||.|. +|.++|..|.+.|  .+|+++++...                            +++  +.++.||+
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~~~~T~----------------------------~l~l~~~~~~ADI  213 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKEN--ATVTIVHSGTS----------------------------TEDMIDYLRTADI  213 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTSC----------------------------HHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCCC----------------------------CchhhhhhccCCE
Confidence            468999999877 7999999999988  89999987321                            344  67889999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ||.+++...+   +.  ..+++++++||++.
T Consensus       214 VI~Avg~p~~---I~--~~~vk~GavVIDvg  239 (300)
T 4a26_A          214 VIAAMGQPGY---VK--GEWIKEGAAVVDVG  239 (300)
T ss_dssp             EEECSCCTTC---BC--GGGSCTTCEEEECC
T ss_pred             EEECCCCCCC---Cc--HHhcCCCcEEEEEe
Confidence            9999996432   11  35678999999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.69  E-value=0.0022  Score=61.74  Aligned_cols=73  Identities=25%  Similarity=0.250  Sum_probs=57.6

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.|. +|..+|..|...|  ..|++..+..                            .++++.++.||+||
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI  209 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILI  209 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHhcccCCEEE
Confidence            468999999987 7999999999988  8999886531                            16778899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +  -..+++++++||++.
T Consensus       210 ~Avg~p~~---I--~~~~vk~GavVIDvg  233 (285)
T 3l07_A          210 VAVGKPNF---I--TADMVKEGAVVIDVG  233 (285)
T ss_dssp             ECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             ECCCCCCC---C--CHHHcCCCcEEEEec
Confidence            99985432   1  135678899998873

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.69  E-value=0.0027  Score=60.97  Aligned_cols=73  Identities=25%  Similarity=0.345  Sum_probs=57.3

Q ss_pred             CCCeEEEEcccHH-HHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGGGSF-GTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGam-G~alA~~La~a--G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..+++.|||.|.+ |..+|..|...  |  .+|++..+..                            .++.+.++.||+
T Consensus       157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~~--atVtv~h~~t----------------------------~~L~~~~~~ADI  206 (281)
T 2c2x_A          157 AGAHVVVIGRGVTVGRPLGLLLTRRSEN--ATVTLCHTGT----------------------------RDLPALTRQADI  206 (281)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHTSTTTC--CEEEEECTTC----------------------------SCHHHHHTTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHhcCCCC--CEEEEEECch----------------------------hHHHHHHhhCCE
Confidence            3689999999975 99999999988  6  7999886432                            267788899999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ||.+++...+   +.  ..+++++.+||++.
T Consensus       207 VI~Avg~p~~---I~--~~~vk~GavVIDVg  232 (281)
T 2c2x_A          207 VVAAVGVAHL---LT--ADMVRPGAAVIDVG  232 (281)
T ss_dssp             EEECSCCTTC---BC--GGGSCTTCEEEECC
T ss_pred             EEECCCCCcc---cC--HHHcCCCcEEEEcc
Confidence            9999996542   11  34578899998874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.68  E-value=0.0033  Score=60.89  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.|. +|..+|..|...|  ..|+++++..                            .++++.++.||+||
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI  213 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKT----------------------------AHLDEEVNKGDILV  213 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCC--CeEEEEECCc----------------------------ccHHHHhccCCEEE
Confidence            368999999996 7999999999988  8999986431                            26778899999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +.  ..+++++.+||++.
T Consensus       214 ~Avg~p~~---I~--~~~vk~GavVIDVg  237 (301)
T 1a4i_A          214 VATGQPEM---VK--GEWIKPGAIVIDCG  237 (301)
T ss_dssp             ECCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred             ECCCCccc---CC--HHHcCCCcEEEEcc
Confidence            99997542   11  34578899999884

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.66  E-value=0.0022  Score=61.73  Aligned_cols=73  Identities=16%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.|. +|..+|..|...|  .+|+++++..                            .++++.++.||+||
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI  207 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFT----------------------------KNLRHHVENADLLI  207 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSC----------------------------SCHHHHHHHCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhccCCEEE
Confidence            368999999996 6999999999988  8999986432                            26777789999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +.  ..+++++.+||++.
T Consensus       208 ~Avg~p~l---I~--~~~vk~GavVIDVg  231 (288)
T 1b0a_A          208 VAVGKPGF---IP--GDWIKEGAIVIDVG  231 (288)
T ss_dssp             ECSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred             ECCCCcCc---CC--HHHcCCCcEEEEcc
Confidence            99996542   10  34578899999874

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.66  E-value=0.0039  Score=61.81  Aligned_cols=102  Identities=17%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             cCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHHhcCCCCCCCCCCCC---CceEEeC-CHHHhcc
Q 014700          125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLP---ENVIATT-DAKTALL  198 (420)
Q Consensus       125 ~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~-r~~~~~~~i~~~g~~~~~l~~~~l~---~~i~a~t-d~~eal~  198 (420)
                      +.++||+|+| .|.+|..+.+.|.+.. +.+|..+. .+....+.+.+.+..   +.+..++   ..+.+.+ ++++ +.
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~s~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~-~~   76 (350)
T 2ep5_A            2 ADKIKVSLLGSTGMVGQKMVKMLAKHP-YLELVKVSASPSKIGKKYKDAVKW---IEQGDIPEEVQDLPIVSTNYED-HK   76 (350)
T ss_dssp             CCCEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECCGGGTTSBHHHHCCC---CSSSSCCHHHHTCBEECSSGGG-GT
T ss_pred             CCCcEEEEECcCCHHHHHHHHHHHhCC-CcEEEEEecChhhcCCCHHHhcCc---ccccccccCCceeEEeeCCHHH-hc
Confidence            3467999999 6999999999998754 35776664 222211122221110   0000000   0112221 4444 57


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ++|+||+|+|.....++......   .+..||+.+.
T Consensus        77 ~vDvVf~atp~~~s~~~a~~~~~---aG~~VId~s~  109 (350)
T 2ep5_A           77 DVDVVLSALPNELAESIELELVK---NGKIVVSNAS  109 (350)
T ss_dssp             TCSEEEECCCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred             CCCEEEECCChHHHHHHHHHHHH---CCCEEEECCc
Confidence            89999999998877776665543   4667888764

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.66  E-value=0.0032  Score=62.08  Aligned_cols=103  Identities=18%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHH-hcCCC-CCCCCC--CC-CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNC-RYFPEQ--KL-PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~-~g~~~-~~l~~~--~l-~~~i~a~td~~eal~~a  200 (420)
                      |+||+|+|+|.||..+++.|.+.. +.++. +.+++++...+... .+... ..+++.  .+ ...+.+..++++.+.++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   79 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCC-CcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCC
Confidence            469999999999999999998753 25654 35666444433332 21000 000000  00 01122223566666789


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+||.|+|.....+.......   .+..||..+
T Consensus        80 DvV~~atp~~~~~~~a~~~l~---aG~~VId~s  109 (337)
T 1cf2_P           80 DIVIDCTPEGIGAKNLKMYKE---KGIKAIFQG  109 (337)
T ss_dssp             SEEEECCSTTHHHHHHHHHHH---HTCCEEECT
T ss_pred             CEEEECCCchhhHHHHHHHHH---cCCEEEEec
Confidence            999999998776666554433   244455443

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.60  E-value=0.013  Score=57.63  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eC--CHHHHHHHHHhcCCCCCCCCC------CCC---CceEEe--CC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR--DPAVCQSINEKHCNCRYFPEQ------KLP---ENVIAT--TD  192 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r--~~~~~~~i~~~g~~~~~l~~~------~l~---~~i~a~--td  192 (420)
                      ++||+|+|+|.+|..+++.|.+.. +.+|..+ ++  +.+.+..+.+.......+++.      .+.   ..+.+.  .|
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~-~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d   81 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSG-KVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   81 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC-SSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence            469999999999999999998764 3676644 43  666666655421110011110      010   122223  36


Q ss_pred             HHHhc---cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       193 ~~eal---~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +++..   .++|+||.|+|.....+....   +++.|..+|.+++.
T Consensus        82 ~~~l~~~~~~vDvV~eatg~~~~~e~a~~---~l~aGak~V~iSap  124 (335)
T 1u8f_O           82 PSKIKWGDAGAEYVVESTGVFTTMEKAGA---HLQGGAKRVIISAP  124 (335)
T ss_dssp             GGGCCTTTTTCCEEEECSSSCCSHHHHGG---GGGGTCSEEEESSC
T ss_pred             HHHCccccCCCCEEEECCCchhhHHHHHH---HHhCCCeEEEeccC
Confidence            66641   479999999998776665543   44456555666643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.60  E-value=0.0031  Score=62.74  Aligned_cols=98  Identities=18%  Similarity=0.337  Sum_probs=59.4

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .++||+|+| .|.+|..+.+.|.+.. +.++..+....+....+...+..   +.+... ..+... + ++.+.++|+||
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~~~~~g~~~~~~~~~---~~~~v~-~dl~~~-~-~~~~~~vDvVf   87 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHP-HFQVTLMTADRKAGQSMESVFPH---LRAQKL-PTLVSV-K-DADFSTVDAVF   87 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCS-SEEEEEEBCSTTTTSCHHHHCGG---GTTSCC-CCCBCG-G-GCCGGGCSEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCC-CcEEEEEeCchhcCCCHHHhCch---hcCccc-ccceec-c-hhHhcCCCEEE
Confidence            346999999 7999999999999865 35777665433221222221110   111000 011111 2 33456899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +|+|.....+.....    +.+..+|+++.
T Consensus        88 ~atp~~~s~~~a~~~----~aG~~VId~sa  113 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL----PTALKIVDLSA  113 (359)
T ss_dssp             ECCCTTTHHHHHHTS----CTTCEEEECSS
T ss_pred             EcCCchhHHHHHHHH----hCCCEEEECCc
Confidence            999988776665544    46788888875

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.59  E-value=0.0014  Score=65.19  Aligned_cols=100  Identities=21%  Similarity=0.293  Sum_probs=59.7

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHHhcCCCCCCCC-CCCCCceEEeCCHHHhccC
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKS----QLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLG  199 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~----~~~V~l~~r~~~~~~~i~~~g~~~~~l~~-~~l~~~i~a~td~~eal~~  199 (420)
                      .||||+|+| .|.+|..+.+.|.+.++    ..+|+.+.+....-+.+...+..   +.+ ..+  .+.. .+.++ +.+
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~---l~~~~~~--~~~~-~~~~~-~~~   80 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH---LTPLAHR--VVEP-TEAAV-LGG   80 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTT---CGGGTTC--BCEE-CCHHH-HTT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccc---cccccee--eecc-CCHHH-hcC
Confidence            467999999 89999999999987640    24677665322110111111100   100 011  1111 24443 568


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+||+|+|.....+++..+    +.+..+|+++.-.
T Consensus        81 ~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~~  113 (352)
T 2nqt_A           81 HDAVFLALPHGHSAVLAQQL----SPETLIIDCGADF  113 (352)
T ss_dssp             CSEEEECCTTSCCHHHHHHS----CTTSEEEECSSTT
T ss_pred             CCEEEECCCCcchHHHHHHH----hCCCEEEEECCCc
Confidence            99999999988766666655    3578888887543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.56  E-value=0.0033  Score=60.50  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhc--CCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANK--KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~a--G~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~a  200 (420)
                      .++||+|||+|.||...+..|.+.  ..+.++. +++++..     .+     .+        ++. .+|+++++.  +.
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~-----~~--------g~~-~~~~~ell~~~~v   66 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GS-----LD--------EVR-QISLEDALRSQEI   66 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CE-----ET--------TEE-BCCHHHHHHCSSE
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HH-----Hc--------CCC-CCCHHHHhcCCCC
Confidence            357999999999999999888651  1125555 5666421     00     00        222 358888775  68


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|++|+|.....+++.....   .++.|++ -|-+.
T Consensus        67 D~V~i~tp~~~H~~~~~~al~---aGkhVl~-EKPla   99 (294)
T 1lc0_A           67 DVAYICSESSSHEDYIRQFLQ---AGKHVLV-EYPMT   99 (294)
T ss_dssp             EEEEECSCGGGHHHHHHHHHH---TTCEEEE-ESCSC
T ss_pred             CEEEEeCCcHhHHHHHHHHHH---CCCcEEE-eCCCC
Confidence            999999998776666655433   4555543 45444

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.53  E-value=0.0028  Score=61.03  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.|||.|. +|.++|..|...|  .+|++..+..                            .++++.++.||+||
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~g--AtVtv~hs~T----------------------------~~L~~~~~~ADIVI  209 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGG--CTVTVTHRFT----------------------------RDLADHVSRADLVV  209 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCC----------------------------cCHHHHhccCCEEE
Confidence            468999999876 8999999999988  8999886521                            15777889999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+++...+   +  -..+++++++||++.
T Consensus       210 ~Avg~p~~---I--~~~~vk~GavVIDvg  233 (286)
T 4a5o_A          210 VAAGKPGL---V--KGEWIKEGAIVIDVG  233 (286)
T ss_dssp             ECCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             ECCCCCCC---C--CHHHcCCCeEEEEec
Confidence            99985432   1  135678999999874

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.53  E-value=0.0053  Score=61.49  Aligned_cols=93  Identities=20%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC----HHH----H----HHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAV----C----QSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~----~~~----~----~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      ..||.|+|+|.+|..+|+.|...|. .+|+++||+    .++    +    +.+.+. .+.           .....+++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~-----------~~~~~~L~  258 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP-----------ERLSGDLE  258 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT-----------TCCCSCHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc-----------cCchhhHH
Confidence            4699999999999999999999982 489999998    432    1    122221 110           01134799


Q ss_pred             HhccCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+++++|++|-+.... ..+++++.    +.++.+|+.++|-.
T Consensus       259 eav~~ADVlIG~Sap~l~t~emVk~----Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          259 TALEGADFFIGVSRGNILKPEWIKK----MSRKPVIFALANPV  297 (388)
T ss_dssp             HHHTTCSEEEECSCSSCSCHHHHTT----SCSSCEEEECCSSS
T ss_pred             HHHccCCEEEEeCCCCccCHHHHHh----cCCCCEEEEcCCCC
Confidence            9999999999876532 35555544    44577889999854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.53  E-value=0.00052  Score=63.39  Aligned_cols=76  Identities=21%  Similarity=0.384  Sum_probs=48.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||+|.|.| .|.+|.+++..|++.| .++|++++|+++..+.+...+  ...+     ...+.-..+++++++++|+||.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G-~~~V~~~~R~~~~~~~~~~~~--~~~~-----~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAKIHKPYPTN--SQII-----MGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCT-TEEEEEEESSGGGSCSSCCTT--EEEE-----ECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCC-CceEEEEEcChhhhcccccCC--cEEE-----EecCCCHHHHHHHhcCCCEEEE
Confidence            67899999 5999999999999987 369999999876432211100  0000     0000001134456788999998


Q ss_pred             ccChh
Q 014700          206 AMPVQ  210 (420)
Q Consensus       206 aVp~~  210 (420)
                      +....
T Consensus        95 ~a~~~   99 (236)
T 3qvo_A           95 NLTGE   99 (236)
T ss_dssp             ECCST
T ss_pred             cCCCC
Confidence            77643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.53  E-value=0.0046  Score=58.89  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~-----~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      .+|+|.|+|+ |.+|.+++..|.+.|  ++|++++|+     ++..+.+... ........+     .+.-..++.++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-----D~~d~~~l~~~~~   75 (313)
T 1qyd_A            3 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA-----SLDDHQRLVDALK   75 (313)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECC-----CSSCHHHHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeC-----CCCCHHHHHHHHh
Confidence            3689999996 999999999999998  899999998     4444443221 111111100     0110123556788


Q ss_pred             CCcEEEEccCh
Q 014700          199 GADYCLHAMPV  209 (420)
Q Consensus       199 ~aDiVIlaVp~  209 (420)
                      ++|+||.+...
T Consensus        76 ~~d~vi~~a~~   86 (313)
T 1qyd_A           76 QVDVVISALAG   86 (313)
T ss_dssp             TCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            99999998753

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=96.52  E-value=0.0039  Score=62.55  Aligned_cols=108  Identities=15%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             CeEEEEcccHHH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC----CCCceEEeC----CHHHhcc
Q 014700          128 NKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK----LPENVIATT----DAKTALL  198 (420)
Q Consensus       128 mkI~IIGaGamG-~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~----l~~~i~a~t----d~~eal~  198 (420)
                      ||+..+|+|++| ..++..|.++|  ++|++.++++..++.+++.+.-...+-+..    .-.++++..    +.-+++.
T Consensus         1 mkavhfGaGniGRGfig~~l~~~g--~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~   78 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADAG--IQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIA   78 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHTT--CEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHT
T ss_pred             CcEEEECCCccchhhHHHHHHHcC--CeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHc
Confidence            799999999999 55666778888  999999999999999998753111111111    112344332    1233567


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcC--------CCCCeEEEeccCCC
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYV--------DPGLPFISLSKGLE  237 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l--------~~~~iVVs~snGi~  237 (420)
                      ++|+|..++....++.+...|...+        .+.-.|++|-|-..
T Consensus        79 ~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~  125 (382)
T 3h2z_A           79 QVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVR  125 (382)
T ss_dssp             TCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTT
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccc
Confidence            9999999999776666554443322        13345788887443

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.0051  Score=60.43  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=58.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc-------CCCCeEE-EEeCCHHHH------HHHHHhcCCCCCCCCCCCCCceEEe--
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK-------KSQLKVY-MLMRDPAVC------QSINEKHCNCRYFPEQKLPENVIAT--  190 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a-------G~~~~V~-l~~r~~~~~------~~i~~~g~~~~~l~~~~l~~~i~a~--  190 (420)
                      |+||+|||+|.||..++..|.+.       |.+.+|. +++++.+..      +.+.+....            ...+  
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~------------~~~~~~   69 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET------------GMLRDD   69 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH------------SSCSBC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC------------ccccCC
Confidence            67999999999999999999875       1125666 455653221      111111000            0112  


Q ss_pred             CCHHHhcc--CCcEEEEccChhhH-HHHHHHhhhcCCCCCeEEEeccC
Q 014700          191 TDAKTALL--GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       191 td~~eal~--~aDiVIlaVp~~~l-~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      .|+++.+.  +.|+|+.|+|+... .+..+.+...+..+.-||+..|+
T Consensus        70 ~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKk  117 (327)
T 3do5_A           70 AKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKG  117 (327)
T ss_dssp             CCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSH
T ss_pred             CCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCch
Confidence            27777664  68999999997642 11333445556678888876654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.50  E-value=0.0018  Score=63.42  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             CCeEEEEcccHH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE--e--CCHHHhccCCc
Q 014700          127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--T--TDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGam-G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~--td~~eal~~aD  201 (420)
                      .+++.|||+|.| |..+|..|...|  .+|++++|+.....   +..   ..+... .......  +  .++++.+.+||
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~g--AtVtv~nR~~~~l~---~ra---~~la~~-~~~~t~~~~t~~~~L~e~l~~AD  247 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQKF---TRG---ESLKLN-KHHVEDLGEYSEDLLKKCSLDSD  247 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEEEE---ESC---CCSSCC-CCEEEEEEECCHHHHHHHHHHCS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCC--CEEEEEeCchHHHH---hHH---HHHhhh-cccccccccccHhHHHHHhccCC
Confidence            679999999976 999999999988  79999988742110   000   001100 0000001  2  57888899999


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +||.+++....  ++.  ..+++++.+||++.
T Consensus       248 IVIsAtg~p~~--vI~--~e~vk~GavVIDVg  275 (320)
T 1edz_A          248 VVITGVPSENY--KFP--TEYIKEGAVCINFA  275 (320)
T ss_dssp             EEEECCCCTTC--CBC--TTTSCTTEEEEECS
T ss_pred             EEEECCCCCcc--eeC--HHHcCCCeEEEEcC
Confidence            99999996431  010  34567888998885

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.48  E-value=0.0038  Score=60.97  Aligned_cols=99  Identities=19%  Similarity=0.187  Sum_probs=62.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC---HHHHHHHHHhcCCCCCCCCCCCCCceEE--eCCH---HHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIA--TTDA---KTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~---~~~~~~i~~~g~~~~~l~~~~l~~~i~a--~td~---~eal~  198 (420)
                      .+++.|+|+|.+|.+++..|++.|. .+|++++|+   .++++++.+.-.. .      ....+.+  ..+.   .+.+.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~-~~v~v~nRt~~~~~~a~~la~~~~~-~------~~~~v~~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGI-KEIKLFNRKDDFFEKAVAFAKRVNE-N------TDCVVTVTDLADQHAFTEALA  219 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTHHHHHHHHHHHHHH-H------SSCEEEEEETTCHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEECCCchHHHHHHHHHHhhh-c------cCcceEEechHhhhhhHhhcc
Confidence            5799999999999999999999882 389999999   7777766542100 0      0001122  2243   45567


Q ss_pred             CCcEEEEccChhhHHHHHHHh---hhcCCCCCeEEEec
Q 014700          199 GADYCLHAMPVQFSSSFLEGI---SDYVDPGLPFISLS  233 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i---~~~l~~~~iVVs~s  233 (420)
                      ++|+||-|+|..-...--..+   ...++++.+|+.+.
T Consensus       220 ~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  257 (312)
T 3t4e_A          220 SADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV  257 (312)
T ss_dssp             HCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred             CceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence            899999999953210000001   13455667777664

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.47  E-value=0.0057  Score=57.65  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|.+|+.++..|++.|. .+++++|++.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            5799999999999999999999984 4889997763

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.46  E-value=0.0048  Score=58.61  Aligned_cols=87  Identities=11%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC------HHHHHHHHHh-cCCCCCCCCCCCCCceEEeCCHHHhc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD------PAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL  197 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~------~~~~~~i~~~-g~~~~~l~~~~l~~~i~a~td~~eal  197 (420)
                      .+|+|.|+|+ |.+|.+++..|.+.|  ++|++.+|+      +++.+.+... .........     .+.-..++.+++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~-----D~~d~~~l~~~~   75 (308)
T 1qyc_A            3 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHG-----SIDDHASLVEAV   75 (308)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECC-----CTTCHHHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEe-----ccCCHHHHHHHH
Confidence            3689999997 999999999999998  899999997      3333333211 111111100     000012345667


Q ss_pred             cCCcEEEEccChh---hHHHHHHHh
Q 014700          198 LGADYCLHAMPVQ---FSSSFLEGI  219 (420)
Q Consensus       198 ~~aDiVIlaVp~~---~l~~vl~~i  219 (420)
                      +++|+||.+....   ....+++.+
T Consensus        76 ~~~d~vi~~a~~~~~~~~~~l~~aa  100 (308)
T 1qyc_A           76 KNVDVVISTVGSLQIESQVNIIKAI  100 (308)
T ss_dssp             HTCSEEEECCCGGGSGGGHHHHHHH
T ss_pred             cCCCEEEECCcchhhhhHHHHHHHH
Confidence            8999999988743   234444444

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.39  E-value=0.0012  Score=65.11  Aligned_cols=89  Identities=25%  Similarity=0.413  Sum_probs=56.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-------CCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-------~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      ++||+|||+|.||..++..|.+...       +.+|. +++|+.++.     .+     +     +. ...++|+++.+ 
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----~~-----~-----~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----RA-----I-----PQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----CS-----S-----CG-GGEESSCCCCT-
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----hc-----c-----Cc-ccccCCHHHHh-
Confidence            4699999999999999999987520       13444 556764321     11     1     11 13456777777 


Q ss_pred             CCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccC
Q 014700          199 GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       199 ~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +.|+|+.|+|... ..+.+.+   .+..++-||+..+.
T Consensus        66 ~iDvVve~t~~~~~a~~~~~~---AL~aGKhVVtaNkk  100 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLRLVLP---ALEAGIPLITANKA  100 (332)
T ss_dssp             TCSEEEECCCCSHHHHHHHHH---HHHTTCCEEECCHH
T ss_pred             CCCEEEECCCCcHHHHHHHHH---HHHcCCeEEECCch
Confidence            9999999999753 3444433   23456777765443

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.38  E-value=0.0053  Score=60.26  Aligned_cols=98  Identities=12%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc-----CCCCeEE-EEeCCHH---------HH-HHHHHhcCCCCCCCCCCCCCceEEe
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK-----KSQLKVY-MLMRDPA---------VC-QSINEKHCNCRYFPEQKLPENVIAT  190 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a-----G~~~~V~-l~~r~~~---------~~-~~i~~~g~~~~~l~~~~l~~~i~a~  190 (420)
                      ++||+|||+|.||..++..|.+.     |.+.+|. +.+++.+         .. +...+.+.    ++..       ..
T Consensus         4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~----~~~~-------~~   72 (325)
T 3ing_A            4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGR----ISDR-------AF   72 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSC----SCSS-------BC
T ss_pred             eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCC----CCcc-------cC
Confidence            46899999999999999999874     2224555 3455532         11 11222221    0100       01


Q ss_pred             CCHHHhcc--CCcEEEEccChhhH-HHHHHHhhhcCCCCCeEEEeccCC
Q 014700          191 TDAKTALL--GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       191 td~~eal~--~aDiVIlaVp~~~l-~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                       |.++.+.  +.|+|+.|+|+... +...+.+...++.+.-||+..|+.
T Consensus        73 -d~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~  120 (325)
T 3ing_A           73 -SGPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSG  120 (325)
T ss_dssp             -CSGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHH
T ss_pred             -CHHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchh
Confidence             3344443  58999999997532 333344445556788888776643

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.33  E-value=0.011  Score=62.50  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..||.|||+|..|+.+|..|+..|. -+++++|.+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGV-G~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-CEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            4699999999999999999999995 489999766

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.30  E-value=0.0073  Score=59.84  Aligned_cols=103  Identities=22%  Similarity=0.277  Sum_probs=59.8

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCC--CCCCCCCCCceEEeCCHHHhcc-CCc
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCR--YFPEQKLPENVIATTDAKTALL-GAD  201 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~--~l~~~~l~~~i~a~td~~eal~-~aD  201 (420)
                      ++||+|+| .|.+|..+.+.|.+.. +.+|..+.+++. ..+.+.+.+....  .++.......+. ..++++.++ ++|
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p-~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D   85 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHP-MFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVI-PTDPKHEEFEDVD   85 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCE-ESCTTSGGGTTCC
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCC-CCEEEEEEcccccccccHHHhcccccccccccCceeeEEE-eCCHHHHhcCCCC
Confidence            47999999 7999999999998764 367776653221 1112222111000  000000000111 124555446 899


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +||+|+|.....+....+..   .+..||+.+.
T Consensus        86 vV~~atp~~~~~~~a~~~~~---aG~~VId~s~  115 (354)
T 1ys4_A           86 IVFSALPSDLAKKFEPEFAK---EGKLIFSNAS  115 (354)
T ss_dssp             EEEECCCHHHHHHHHHHHHH---TTCEEEECCS
T ss_pred             EEEECCCchHHHHHHHHHHH---CCCEEEECCc
Confidence            99999998877777666543   5677888764

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.20  E-value=0.017  Score=57.03  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=58.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhc-CC--CCC-CCC-C-CC-CCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKH-CN--CRY-FPE-Q-KL-PENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g-~~--~~~-l~~-~-~l-~~~i~a~td~~eal~  198 (420)
                      |+||+|+|+|.+|..+++.|.+.. +.+|.. .+++++....+.+.. ..  .++ .++ . .+ ...+.+..++++...
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~-~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~   80 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQD-DMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE   80 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence            469999999999999999998763 256553 455554444443321 00  000 000 0 00 001222234555557


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      ++|+||.|+|.....+..+  ..+++.|+.||.
T Consensus        81 ~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~  111 (343)
T 2yyy_A           81 DADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL  111 (343)
T ss_dssp             GCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred             CCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence            8999999999876555443  345556666554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.17  E-value=0.0069  Score=58.01  Aligned_cols=99  Identities=16%  Similarity=0.297  Sum_probs=61.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+++.|+|+|.+|.++|..|++.|   +|++++|+.++++.+.+.-.. ..  .......+.+. +..+.+.++|+||.+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~-~~--~~~~~~~~d~~-~~~~~~~~~DilVn~  200 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KL--NKKFGEEVKFS-GLDVDLDGVDIIINA  200 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HH--TCCHHHHEEEE-CTTCCCTTCCEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhh-hc--ccccceeEEEe-eHHHhhCCCCEEEEC
Confidence            578999999999999999999875   899999998877666542100 00  00000011222 234456789999999


Q ss_pred             cChhhHHH---H-HHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSS---F-LEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~---v-l~~i~~~l~~~~iVVs~s  233 (420)
                      ++......   . +. -...++++.+++.+.
T Consensus       201 ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~  230 (287)
T 1nvt_A          201 TPIGMYPNIDVEPIV-KAEKLREDMVVMDLI  230 (287)
T ss_dssp             SCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred             CCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence            98543210   0 00 123456677788775

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.15  E-value=0.0057  Score=62.93  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC-----HHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-----AKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~---~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td-----~~eal~  198 (420)
                      .+||.|||+|.||+.++..|+++. ++   +|++.|.+....+.....+....         .+.++.+     ++.+++
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~-dv~~~~I~vaD~~~~~~~~~~~~g~~~~---------~~~Vdadnv~~~l~aLl~   82 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKF-DIKPSQVTIIAAEGTKVDVAQQYGVSFK---------LQQITPQNYLEVIGSTLE   82 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHB-CCCGGGEEEEESSCCSCCHHHHHTCEEE---------ECCCCTTTHHHHTGGGCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCC-CCceeEEEEeccchhhhhHHhhcCCcee---------EEeccchhHHHHHHHHhc
Confidence            579999999999999999999974 34   68888876543222222221100         1111112     234556


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +.|+||-+.+......+++....   .+.-.+++++
T Consensus        83 ~~DvVIN~s~~~~~l~Im~acle---aGv~YlDTa~  115 (480)
T 2ph5_A           83 ENDFLIDVSIGISSLALIILCNQ---KGALYINAAT  115 (480)
T ss_dssp             TTCEEEECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred             CCCEEEECCccccCHHHHHHHHH---cCCCEEECCC
Confidence            67999998887776666666544   3667777765

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.15  E-value=0.0014  Score=58.13  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=32.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      |+|.|+|+ |.+|..++..|.+.|  ++|++++|+++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhh
Confidence            79999998 999999999999998  999999998753

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.15  E-value=0.0084  Score=59.47  Aligned_cols=99  Identities=15%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..|.||+|||+ |..|.-|.+.|.+.- ..++..+.-....-+.+.+.+....  .+..    +.. .+.++...++|++
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~hP-~~el~~l~S~~~aG~~~~~~~p~~~--~~l~----~~~-~~~~~~~~~~Dvv   82 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFPSTL--ENSI----LSE-FDPEKVSKNCDVL   82 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCGGGC--CCCB----CBC-CCHHHHHHHCSEE
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEeCcccccCChHHhChhhc--cCce----EEe-CCHHHhhcCCCEE
Confidence            34679999995 999999999999864 3577766533222122222111100  0111    111 2455544689999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |+|+|...-.++..++     .+..||+++.-+
T Consensus        83 f~alp~~~s~~~~~~~-----~g~~VIDlSsdf  110 (351)
T 1vkn_A           83 FTALPAGASYDLVREL-----KGVKIIDLGADF  110 (351)
T ss_dssp             EECCSTTHHHHHHTTC-----CSCEEEESSSTT
T ss_pred             EECCCcHHHHHHHHHh-----CCCEEEECChhh
Confidence            9999988877766554     588899988543

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.14  E-value=0.0034  Score=59.25  Aligned_cols=72  Identities=11%  Similarity=0.103  Sum_probs=48.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||.|.|+ |.+|..++..|.+. |  ++|++.+|+++....+...+.  .+...     .+.-..+++++++++|+||.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g--~~V~~~~R~~~~~~~~~~~~v--~~~~~-----D~~d~~~l~~~~~~~d~vi~   71 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHI--DHFHIGVRNVEKVPDDWRGKV--SVRQL-----DYFNQESMVEAFKGMDTVVF   71 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTC--TTEEEEESSGGGSCGGGBTTB--EEEEC-----CTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCC--CcEEEEECCHHHHHHhhhCCC--EEEEc-----CCCCHHHHHHHHhCCCEEEE
Confidence            68999995 99999999999987 7  899999999865433322111  10000     00001134567889999999


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        72 ~a~   74 (289)
T 3e48_A           72 IPS   74 (289)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            865

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.05  E-value=0.004  Score=61.15  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |||.|||+|..|.++|..|+++|  ++|++++|++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            79999999999999999999999  9999998754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.05  E-value=0.0052  Score=58.33  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=54.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHH---HhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~-------~~~~~i~---~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      +|+|.|.|+ |.+|.+++..|.+.|  ++|++.+|++       ++.+.+.   ..+.  ..+..     .+.-..++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v--~~v~~-----D~~d~~~l~~   72 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGV--ILLEG-----DINDHETLVK   72 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTC--EEEEC-----CTTCHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCC--EEEEe-----CCCCHHHHHH
Confidence            579999997 999999999999998  8999999986       5444332   2221  11000     0000113456


Q ss_pred             hccCCcEEEEccCh---hhHHHHHHHh
Q 014700          196 ALLGADYCLHAMPV---QFSSSFLEGI  219 (420)
Q Consensus       196 al~~aDiVIlaVp~---~~l~~vl~~i  219 (420)
                      +++++|+||.+...   .....+++.+
T Consensus        73 ~~~~~d~vi~~a~~~~~~~~~~l~~aa   99 (307)
T 2gas_A           73 AIKQVDIVICAAGRLLIEDQVKIIKAI   99 (307)
T ss_dssp             HHTTCSEEEECSSSSCGGGHHHHHHHH
T ss_pred             HHhCCCEEEECCcccccccHHHHHHHH
Confidence            67899999998763   3344445444

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.98  E-value=0.006  Score=63.94  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             CccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      .++|+....|..+.+-+...    ..+... .. ++|.|+|+|.+|..+|..|.+.|  ++|++.+.+++.++.+.    
T Consensus       321 ~~GD~L~v~g~~~~l~~~~~----~~~~~~-~~-~~viIiG~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~----  388 (565)
T 4gx0_A          321 TEQSLLVLAGTKSQLAALEY----LIGEAP-ED-ELIFIIGHGRIGCAAAAFLDRKP--VPFILIDRQESPVCNDH----  388 (565)
T ss_dssp             -------------------------------CC-CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCSSCCSS----
T ss_pred             CCCCEEEEEeCHHHHHHHHH----HhcCCC-CC-CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECChHHHhhcC----
Confidence            34566777776666422221    111111 22 79999999999999999999998  99999999987543321    


Q ss_pred             CCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          174 NCRYFPEQKLPENVIATTDAKTA-LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       174 ~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                       .....+..-+      ..++++ ++++|.+|++++++...-++-.++..+.++..+|.-.+
T Consensus       389 -~~i~gD~t~~------~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iiar~~  443 (565)
T 4gx0_A          389 -VVVYGDATVG------QTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARAN  443 (565)
T ss_dssp             -CEEESCSSSS------THHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             -CEEEeCCCCH------HHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEEEEC
Confidence             0001110000      123333 67899999999987543333334444555545555554

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.97  E-value=0.021  Score=56.23  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eC--CHHHHHHHHHhc-CCCCCCC-C-------CCC--C-CceEEe--
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR--DPAVCQSINEKH-CNCRYFP-E-------QKL--P-ENVIAT--  190 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r--~~~~~~~i~~~g-~~~~~l~-~-------~~l--~-~~i~a~--  190 (420)
                      +||+|+|+|.+|..+.+.|.+.. +.+|..+ ++  +.+....+.+.. ...+ ++ +       ..+  . ..+.+.  
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p-~vevvaI~d~~~~~~~~~~ll~yds~~g~-~~~~~v~~~~~~~l~~~g~~i~v~~~   81 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSE-DVELVAVNDPFITTDYMTYMFKYDTVHGQ-WKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSSCHHHHHHHHHCCTTTCC-CCSSCEEESSSSEEEETTEEEEEECC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHhhcccccCCC-CCCCcEEeecCCeeEECCeEEEEEec
Confidence            59999999999999999998763 2566644 32  444444443211 1111 11 1       001  0 122323  


Q ss_pred             CCHHHhc---cCCcEEEEccChhhHHHHHHHhhhcCCCCC--eEEEe
Q 014700          191 TDAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISL  232 (420)
Q Consensus       191 td~~eal---~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~--iVVs~  232 (420)
                      .|+++.-   .++|+||.|+|.....+.......   .|.  +||+.
T Consensus        82 ~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~  125 (337)
T 3e5r_O           82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISA  125 (337)
T ss_dssp             SCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESS
T ss_pred             CChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEec
Confidence            2666531   479999999998766655544332   344  56554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.97  E-value=0.012  Score=60.20  Aligned_cols=66  Identities=26%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC-Cc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-AD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~----~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~-aD  201 (420)
                      .+||.|||+|..|.+.|..|.+.|  ++|+++|+++    ...+.+.+.|..            +..-.++++.+.+ +|
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~~~~~~L~~~gi~------------~~~g~~~~~~~~~~~d   74 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDENPTAQSLLEEGIK------------VVCGSHPLELLDEDFC   74 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGCHHHHHHHHTTCE------------EEESCCCGGGGGSCEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCChHHHHHHhCCCE------------EEECCChHHhhcCCCC
Confidence            579999999999999999999998  9999999853    234566665531            1111233344455 89


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      +||++
T Consensus        75 ~vv~s   79 (451)
T 3lk7_A           75 YMIKN   79 (451)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.96  E-value=0.0061  Score=59.91  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=56.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHH------HHHhcCCCCCCCCCCCCCce-EEeC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQS------INEKHCNCRYFPEQKLPENV-IATT  191 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~a------G~~~~V~-l~~r~~~~~~~------i~~~g~~~~~l~~~~l~~~i-~a~t  191 (420)
                      .++||+|||+|.||..++..|.+.      |.+.+|. +++|+.+..+.      +.+....          ..+ .+++
T Consensus         5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~   74 (331)
T 3c8m_A            5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEK----------GSLDSLEY   74 (331)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHT----------TCGGGCCS
T ss_pred             cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhcc----------CCcccccC
Confidence            347999999999999999999764      2114554 55676542211      1110000          011 1223


Q ss_pred             ---CHHHhc-cCCcEEEEccChh----hHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          192 ---DAKTAL-LGADYCLHAMPVQ----FSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       192 ---d~~eal-~~aDiVIlaVp~~----~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                         |+++.+ .+.|+|+.|+|..    ...+.+.   ..+..++-||+..|.
T Consensus        75 ~~~d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~~---~AL~aGkhVvtanK~  123 (331)
T 3c8m_A           75 ESISASEALARDFDIVVDATPASADGKKELAFYK---ETFENGKDVVTANKS  123 (331)
T ss_dssp             EECCHHHHHHSSCSEEEECSCCCSSSHHHHHHHH---HHHHTTCEEEECCCH
T ss_pred             CCCCHHHHhCCCCCEEEECCCCCCccchHHHHHH---HHHHCCCeEEecCch
Confidence               777765 3689999999984    3333333   334467778766554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.87  E-value=0.017  Score=52.75  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~a--G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .+|+|.|.|+ |.+|.+++..|++.  |  ++|++.+|+++..+.+   +....++..     .+.-..+++++++++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g--~~V~~~~r~~~~~~~~---~~~~~~~~~-----D~~d~~~~~~~~~~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDK--FVAKGLVRSAQGKEKI---GGEADVFIG-----DITDADSINPAFQGIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTT--CEEEEEESCHHHHHHT---TCCTTEEEC-----CTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCC--cEEEEEEcCCCchhhc---CCCeeEEEe-----cCCCHHHHHHHHcCCCE
Confidence            3689999995 99999999999998  6  8999999998765443   111111100     00001134456778999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      ||.+..
T Consensus        73 vi~~a~   78 (253)
T 1xq6_A           73 LVILTS   78 (253)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            998753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.87  E-value=0.0069  Score=58.01  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHH---HhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~------~~~~~i~---~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      +|+|.|+|+ |.+|.+++..|++.|  ++|++.+|++      +..+.+.   ..+.  .....     .+.-..++.++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v--~~v~~-----D~~d~~~l~~a   74 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGV--TIIEG-----EMEEHEKMVSV   74 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTC--EEEEC-----CTTCHHHHHHH
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCc--EEEEe-----cCCCHHHHHHH
Confidence            679999996 999999999999998  8999999985      3333332   2221  11000     00001235567


Q ss_pred             ccCCcEEEEccCh---hhHHHHHHHhh
Q 014700          197 LLGADYCLHAMPV---QFSSSFLEGIS  220 (420)
Q Consensus       197 l~~aDiVIlaVp~---~~l~~vl~~i~  220 (420)
                      ++++|+||.+...   .....+++...
T Consensus        75 ~~~~d~vi~~a~~~~~~~~~~l~~aa~  101 (321)
T 3c1o_A           75 LKQVDIVISALPFPMISSQIHIINAIK  101 (321)
T ss_dssp             HTTCSEEEECCCGGGSGGGHHHHHHHH
T ss_pred             HcCCCEEEECCCccchhhHHHHHHHHH
Confidence            8899999998764   23444554443

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.85  E-value=0.0035  Score=60.39  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||.|.|+ |.+|.+++..|++.|  ++|++++|+++..+.+...+.  .++.+     .+.-..+++++++++|+||.
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~l~~~~~--~~~~~-----Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQIQRLAYLEP--ECRVA-----EMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCGGGGGGGCC--EEEEC-----CTTCHHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhhhhhccCCe--EEEEe-----cCCCHHHHHHHHcCCCEEEE
Confidence            579999995 999999999999998  999999998754333322111  10000     00001134456788999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        84 ~a~   86 (342)
T 2x4g_A           84 SAG   86 (342)
T ss_dssp             C--
T ss_pred             CCc
Confidence            764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.82  E-value=0.0074  Score=58.65  Aligned_cols=86  Identities=13%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHH---HhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~----~~~~~i~---~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      +|+|.|.|+ |.+|.+++..|.+.|  ++|++++|++    ++.+.+.   ..+.  ..+.+ .+    .-..++.++++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v--~~~~~-Dl----~d~~~l~~~~~   80 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGA--IIVYG-LI----NEQEAMEKILK   80 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTC--EEEEC-CT----TCHHHHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCc--EEEEe-ec----CCHHHHHHHHh
Confidence            579999998 999999999999998  9999999976    4444332   2221  11100 00    00123455677


Q ss_pred             --CCcEEEEccChh---hHHHHHHHhhh
Q 014700          199 --GADYCLHAMPVQ---FSSSFLEGISD  221 (420)
Q Consensus       199 --~aDiVIlaVp~~---~l~~vl~~i~~  221 (420)
                        ++|+||.+....   ....+++.+..
T Consensus        81 ~~~~d~Vi~~a~~~n~~~~~~l~~aa~~  108 (346)
T 3i6i_A           81 EHEIDIVVSTVGGESILDQIALVKAMKA  108 (346)
T ss_dssp             HTTCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred             hCCCCEEEECCchhhHHHHHHHHHHHHH
Confidence              999999988742   34455554433

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.81  E-value=0.007  Score=53.89  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..|+|||+|.-|.+.|..|+++|  ++|+++++.+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~   35 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSR   35 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCC
Confidence            46999999999999999999999  9999999764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.80  E-value=0.0026  Score=57.67  Aligned_cols=70  Identities=14%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEEEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiVIl  205 (420)
                      |||.|.| .|.+|..++..|++.|  ++|++++|+++..+.+  .+  ..++.     ..+.- ..+++++++++|+||.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~--~~--~~~~~-----~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVPQY--NN--VKAVH-----FDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSCCC--TT--EEEEE-----CCTTSCHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchhhc--CC--ceEEE-----ecccCCHHHHHHHHcCCCEEEE
Confidence            6999999 6999999999999998  9999999997642211  00  00000     00000 1124455778999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        70 ~ag   72 (219)
T 3dqp_A           70 VSG   72 (219)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            875

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.79  E-value=0.0089  Score=57.80  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|..|+.++..|+++|. -+++++|.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence            4699999999999999999999995 5899999875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.75  E-value=0.034  Score=57.01  Aligned_cols=92  Identities=13%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC---HH-HhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD---AK-TALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td---~~-eal~~aDi  202 (420)
                      .++|.|+|+|.+|..+|..|.+ .  ++|.+..+++++++.+.+.-.+...+.+.        .+|   ++ +-+.++|+
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~--~~v~iIE~d~~r~~~la~~l~~~~Vi~GD--------~td~~~L~ee~i~~~D~  303 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T--YSVKLIERNLQRAEKLSEELENTIVFCGD--------AADQELLTEENIDQVDV  303 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T--SEEEEEESCHHHHHHHHHHCTTSEEEESC--------TTCHHHHHHTTGGGCSE
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c--CceEEEecCHHHHHHHHHHCCCceEEecc--------ccchhhHhhcCchhhcE
Confidence            5799999999999999999854 4  89999999999999998752211111110        012   22 23678999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeE
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPF  229 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iV  229 (420)
                      ++.++..+..-=+...+++.+....++
T Consensus       304 ~ia~T~~De~Ni~~~llAk~~gv~kvI  330 (461)
T 4g65_A          304 FIALTNEDETNIMSAMLAKRMGAKKVM  330 (461)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEcccCcHHHHHHHHHHHHcCCcccc
Confidence            999999776444444445555444444

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.74  E-value=0.027  Score=53.87  Aligned_cols=42  Identities=17%  Similarity=0.227  Sum_probs=36.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ..|+|.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQ   52 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCcccHHHHH
Confidence            3579999997 999999999999998  99999999987655443

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.68  E-value=0.0094  Score=56.52  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .+|+|.|.|+ |.+|.+++..|.+.| +++|++.+|+++..  +.+...+.  .+..+ .+    .-..+++++++++|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~~V~~~~R~~~~~~~~~l~~~~~--~~~~~-D~----~d~~~l~~~~~~~d~   75 (299)
T 2wm3_A            4 DKKLVVVFGGTGAQGGSVARTLLEDG-TFKVRVVTRNPRKKAAKELRLQGA--EVVQG-DQ----DDQVIMELALNGAYA   75 (299)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHC-SSEEEEEESCTTSHHHHHHHHTTC--EEEEC-CT----TCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcC-CceEEEEEcCCCCHHHHHHHHCCC--EEEEe-cC----CCHHHHHHHHhcCCE
Confidence            3579999998 999999999999876 37999999986542  33333221  11000 00    001134566789999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      ||.+..
T Consensus        76 vi~~a~   81 (299)
T 2wm3_A           76 TFIVTN   81 (299)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            999875

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=95.67  E-value=0.009  Score=59.45  Aligned_cols=105  Identities=24%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             hcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC--CCCCC-CCCCCCceEEeCCHHHhccC
Q 014700          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN--CRYFP-EQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       124 ~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~--~~~l~-~~~l~~~i~a~td~~eal~~  199 (420)
                      |..++||+||| .|..|.-|.+.|.+.- ..++..+..+...-+.+.+....  ...++ +.. ...+.. .+.++ +.+
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~~   79 (359)
T 4dpl_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MDD   79 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CTT
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhcCCChhHhcccccccccccccc-cceEEe-CCHHH-hcC
Confidence            44457999999 5999999999887753 25666554222211222221100  00000 000 001121 23333 679


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+||+|+|.....++...+..   .+..+|+++.-
T Consensus        80 vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~  112 (359)
T 4dpl_A           80 VDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD  112 (359)
T ss_dssp             CCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred             CCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence            9999999998887777766543   57888888753

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=95.67  E-value=0.009  Score=59.45  Aligned_cols=105  Identities=24%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             hcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC--CCCCC-CCCCCCceEEeCCHHHhccC
Q 014700          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN--CRYFP-EQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       124 ~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~--~~~l~-~~~l~~~i~a~td~~eal~~  199 (420)
                      |..++||+||| .|..|.-|.+.|.+.- ..++..+..+...-+.+.+....  ...++ +.. ...+.. .+.++ +.+
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~~   79 (359)
T 4dpk_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MDD   79 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CTT
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhcCCChhHhcccccccccccccc-cceEEe-CCHHH-hcC
Confidence            44457999999 5999999999887753 25666554222211222221100  00000 000 001121 23333 679


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+||+|+|.....++...+..   .+..+|+++.-
T Consensus        80 vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa~  112 (359)
T 4dpk_A           80 VDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSPD  112 (359)
T ss_dssp             CCEEEECCCTTTHHHHHHHHHH---TTCEEEECSST
T ss_pred             CCEEEECCChHHHHHHHHHHHH---CCCEEEEcCCC
Confidence            9999999998887777766543   57888888753

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.57  E-value=0.0098  Score=56.73  Aligned_cols=69  Identities=22%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||.|.| .|.+|..++..|.+.|  ++|++++|++...+ +.  +.  .+.     ...+. ..+++++++++|+||.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~--~~--~~~-----~~Dl~-~~~~~~~~~~~d~Vih   68 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA-IN--DY--EYR-----VSDYT-LEDLINQLNDVDAVVH   68 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC--------CC--EEE-----ECCCC-HHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc-CC--ce--EEE-----Ecccc-HHHHHHhhcCCCEEEE
Confidence            57999999 5999999999999998  99999999854333 32  11  110     01122 2346677889999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        69 ~a~   71 (311)
T 3m2p_A           69 LAA   71 (311)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.56  E-value=0.086  Score=52.13  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|..|+.++..|+.+|. -+++++|++.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv-g~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI-GEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEECCCc
Confidence            5799999999999999999999995 5899999863

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.55  E-value=0.04  Score=54.68  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=57.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVIl  205 (420)
                      .++|+|+|.|++|..+|..|...|  .+|+++|++++. ++..+..             +.... +.++.+. +||+++-
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~G--akVvvsD~~~~~-~~~a~~~-------------ga~~v-~~~ell~~~~DIliP  237 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTER-VAHAVAL-------------GHTAV-ALEDVLSTPCDVFAP  237 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHH-HHHHHHT-------------TCEEC-CGGGGGGCCCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCccH-HHHHHhc-------------CCEEe-ChHHhhcCccceecH
Confidence            689999999999999999999988  899999998764 3333221             11222 4456666 8999985


Q ss_pred             ccCh-hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |--. ....+.++.    ++ ..+|+...|+-
T Consensus       238 ~A~~~~I~~~~~~~----lk-~~iVie~AN~p  264 (355)
T 1c1d_A          238 CAMGGVITTEVART----LD-CSVVAGAANNV  264 (355)
T ss_dssp             CSCSCCBCHHHHHH----CC-CSEECCSCTTC
T ss_pred             hHHHhhcCHHHHhh----CC-CCEEEECCCCC
Confidence            4211 112222333    33 46777777764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.54  E-value=0.01  Score=56.78  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHH---HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQ---SINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~-~~~---~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +++|.|+|+ |.+|.+++..|.+.|  ++|++++|++. ..+   .+...+..  .... .+    .-..++.++++++|
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~l~~~~v~--~v~~-Dl----~d~~~l~~a~~~~d   81 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNSSKTTLLDEFQSLGAI--IVKG-EL----DEHEKLVELMKKVD   81 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTCSCHHHHHHHHHTTCE--EEEC-CT----TCHHHHHHHHTTCS
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCCchhhHHHHhhcCCCE--EEEe-cC----CCHHHHHHHHcCCC
Confidence            358999996 999999999999998  89999999863 222   22222211  1000 00    00123556788999


Q ss_pred             EEEEccChh---hHHHHHHHhh
Q 014700          202 YCLHAMPVQ---FSSSFLEGIS  220 (420)
Q Consensus       202 iVIlaVp~~---~l~~vl~~i~  220 (420)
                      +||.+....   ....+++.+.
T Consensus        82 ~vi~~a~~~~~~~~~~l~~aa~  103 (318)
T 2r6j_A           82 VVISALAFPQILDQFKILEAIK  103 (318)
T ss_dssp             EEEECCCGGGSTTHHHHHHHHH
T ss_pred             EEEECCchhhhHHHHHHHHHHH
Confidence            999988742   3444554443

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=95.50  E-value=0.011  Score=58.36  Aligned_cols=91  Identities=21%  Similarity=0.283  Sum_probs=54.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCC-CCeEEEEe-CCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~-~~~V~l~~-r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDi  202 (420)
                      +|||+|+| .|.+|..+.+.|.+.++ ..++..+. ++..        |.... +.+.    .+.+. .++++ +.++|+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~--------g~~~~-~~g~----~i~~~~~~~~~-~~~~Dv   71 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA--------GQRMG-FAES----SLRVGDVDSFD-FSSVGL   71 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT--------TCEEE-ETTE----EEECEEGGGCC-GGGCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCC--------CCccc-cCCc----ceEEecCCHHH-hcCCCE
Confidence            47999999 69999999999986542 23555554 3211        10000 1110    11111 12322 568999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ||+|+|.....+.+..+..   .+..+|.++.
T Consensus        72 V~~a~g~~~s~~~a~~~~~---aG~kvId~Sa  100 (340)
T 2hjs_A           72 AFFAAAAEVSRAHAERARA---AGCSVIDLSG  100 (340)
T ss_dssp             EEECSCHHHHHHHHHHHHH---TTCEEEETTC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCEEEEeCC
Confidence            9999998776666665543   4666777653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.48  E-value=0.005  Score=57.86  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=49.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~a--G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |+|.|.|+ |.+|..++..|.+.  |  ++|++++|+++..+.+...+.  .+..+     .+.-..+++++++++|+||
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~l~~~~~--~~~~~-----D~~d~~~l~~~~~~~d~vi   71 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA--SQIIAIVRNVEKASTLADQGV--EVRHG-----DYNQPESLQKAFAGVSKLL   71 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTTHHHHHTTC--EEEEC-----CTTCHHHHHHHTTTCSEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC--CeEEEEEcCHHHHhHHhhcCC--eEEEe-----ccCCHHHHHHHHhcCCEEE
Confidence            58999997 99999999999998  7  999999998766555543221  11000     0000113456678899999


Q ss_pred             EccC
Q 014700          205 HAMP  208 (420)
Q Consensus       205 laVp  208 (420)
                      .+..
T Consensus        72 ~~a~   75 (287)
T 2jl1_A           72 FISG   75 (287)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8764

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=95.48  E-value=0.013  Score=58.44  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiV  203 (420)
                      ++||+||| .|.+|.-|.+.|.+.++ ..++.++.....       .|.... +.+.    .+.+. .+. +.+.++|+|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~s-------aG~~~~-~~~~----~~~~~~~~~-~~~~~~Dvv   68 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-------AGKSLK-FKDQ----DITIEETTE-TAFEGVDIA   68 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTT-------TTCEEE-ETTE----EEEEEECCT-TTTTTCSEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcccc-------CCCcce-ecCC----CceEeeCCH-HHhcCCCEE
Confidence            47999999 69999999999998652 124454443221       121111 1110    12221 122 236789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|+|.....+....+.+   .+..||+++.-
T Consensus        69 f~a~~~~~s~~~a~~~~~---~G~~vIDlSa~   97 (366)
T 3pwk_A           69 LFSAGSSTSAKYAPYAVK---AGVVVVDNTSY   97 (366)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             EECCChHhHHHHHHHHHH---CCCEEEEcCCc
Confidence            999998877777766543   57788888754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.39  E-value=0.019  Score=55.48  Aligned_cols=77  Identities=13%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHHhc-----CCCCCCCCCCCCCceEEeCCHH
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKH-----CNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~----~~~~~i~~~g-----~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      ..+|+|.|.|+ |.+|..++..|.+.|  ++|++++|..    +..+.+....     .+..++.+     .+.-..+++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~~~~   95 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG-----DIRDLTTCE   95 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEEC-----CTTCHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEc-----cCCCHHHHH
Confidence            35689999995 999999999999998  9999999853    3444444311     01110000     000011345


Q ss_pred             HhccCCcEEEEccC
Q 014700          195 TALLGADYCLHAMP  208 (420)
Q Consensus       195 eal~~aDiVIlaVp  208 (420)
                      ++++++|+||.+..
T Consensus        96 ~~~~~~d~Vih~A~  109 (351)
T 3ruf_A           96 QVMKGVDHVLHQAA  109 (351)
T ss_dssp             HHTTTCSEEEECCC
T ss_pred             HHhcCCCEEEECCc
Confidence            66779999998764

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=95.38  E-value=0.96  Score=43.33  Aligned_cols=164  Identities=15%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             CceEEeCCHHHhccCCcEEEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE
Q 014700          185 ENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (420)
Q Consensus       185 ~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~  263 (420)
                      .++++++|-.|+++++|++|+-+|- ....++++.+.++++++.+|.+.-. +.+-   .+...+.. ++..  ++.+.+
T Consensus       127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCT-ipp~---~ly~~le~-l~R~--DvgIsS  199 (358)
T 2b0j_A          127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTT---KFAKIFKD-LGRE--DLNITS  199 (358)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCHH---HHHHHHHH-TTCT--TSEEEE
T ss_pred             cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccC-CCHH---HHHHHHHH-hCcc--cCCeec
Confidence            3778999989999999999999995 4488899999999999998876543 5432   23344544 5542  333333


Q ss_pred             C-cccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEEc-CChhHHH--HHHHHHHHHHH-HHHHHHhcc-----
Q 014700          264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS-SDVTGVE--IAGALKNVLAI-AAGIVVGMN-----  333 (420)
Q Consensus       264 G-P~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~s-~Di~g~e--~~~alkNv~Ai-~~G~~~gl~-----  333 (420)
                      - |.-.-+. .|+ ...--+-.+++..+++.++-++.+...|.. .|+.+..  ++.++   .|+ .+|+++-..     
T Consensus       200 ~HPaaVPgt-~Gq-~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~v---TAv~~AGiL~Y~~~vtkI  274 (358)
T 2b0j_A          200 YHPGCVPEM-KGQ-VYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAV---TATVYAGLLAYRDAVTKI  274 (358)
T ss_dssp             CBCSSCTTT-CCC-EEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHH---HHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCC-CCc-cccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHH---HHHHHHHHHHHHHHHHHH
Confidence            2 2211111 222 111122346888999999999887666553 3443321  12211   111 234433221     


Q ss_pred             cc--hhHHHHHHHHHHHHHHHHHHHcCCC
Q 014700          334 LG--NNSMAALVAQGCSEIRWLATKMGAK  360 (420)
Q Consensus       334 lg--~N~~~al~~~~~~E~~~lA~a~Gi~  360 (420)
                      ++  ....-..+...+.-+..|-+..|++
T Consensus       275 lgAP~~mie~q~~esL~tiasLve~~GI~  303 (358)
T 2b0j_A          275 LGAPADFAQMMADEALTQIHNLMKEKGIA  303 (358)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            22  1222345566778888888999985

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.38  E-value=0.022  Score=57.04  Aligned_cols=101  Identities=17%  Similarity=0.294  Sum_probs=58.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCC-----CceEEeCCHHHhccC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLP-----ENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~-----~~i~a~td~~eal~~  199 (420)
                      ++||+||| .|..|.-|.+.|.+.- ..++..+ ......-+.+.+...   ++.+..+|     ..+... +.++.+.+
T Consensus        19 ~~kVaIvGAtG~vG~ell~lL~~hp-~~el~~l~aS~~saGk~~~~~~~---~~~~~~~p~~~~~~~v~~~-~~~~~~~~   93 (381)
T 3hsk_A           19 VKKAGVLGATGSVGQRFILLLSKHP-EFEIHALGASSRSAGKKYKDAAS---WKQTETLPETEQDIVVQEC-KPEGNFLE   93 (381)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTTTSBHHHHCC---CCCSSCCCHHHHTCBCEES-SSCTTGGG
T ss_pred             ccEEEEECCCChHHHHHHHHHHcCC-CceEEEeeccccccCCCHHHhcc---cccccccccccccceEEeC-chhhhccc
Confidence            46999999 5999999999998753 2466533 322211112222110   11111111     012221 22213578


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+||+|+|.....++...+.+   .+..||+++.-
T Consensus        94 ~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa~  126 (381)
T 3hsk_A           94 CDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAKN  126 (381)
T ss_dssp             CSEEEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred             CCEEEECCChhHHHHHHHHHHh---CCCEEEEcCCc
Confidence            9999999999887777776643   57788887753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.30  E-value=0.022  Score=57.19  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .||.|+|+|+.|..+|..|...|. .+|+++|++-       +.++.+++.     |-.... +  .....+++|+++++
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~-----fa~~~~-~--~~~~~~L~eav~~A  259 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLD-----IAKVTN-R--EFKSGTLEDALEGA  259 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---C-----HHHHHS-C--TTCCCSCSHHHHTT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHH-----HhhccC-c--ccchhhHHHHhccC
Confidence            599999999999999999999982 3999999862       101110000     000000 0  00123688999999


Q ss_pred             cEEEEccC-hhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          201 DYCLHAMP-VQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       201 DiVIlaVp-~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      |++|=+.. .-..+++++.+    .++.+|+.++|-.
T Consensus       260 DV~IG~Sapgl~T~EmVk~M----a~~pIIfalsNPt  292 (398)
T 2a9f_A          260 DIFIGVSAPGVLKAEWISKM----AARPVIFAMANPI  292 (398)
T ss_dssp             CSEEECCSTTCCCHHHHHTS----CSSCEEEECCSSS
T ss_pred             CEEEecCCCCCCCHHHHHhh----CCCCEEEECCCCC
Confidence            99886643 33456666554    4788999999965

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.28  E-value=0.012  Score=57.94  Aligned_cols=92  Identities=14%  Similarity=0.244  Sum_probs=56.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-CHHHhccCCcEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-d~~eal~~aDiV  203 (420)
                      +|||+|+| .|.+|..+.+.|.+.++ +.++..+.....       .|.... +.+    ..+.+.. ++ +.+.++|+|
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~-------~G~~~~-~~~----~~i~~~~~~~-~~~~~vDvV   69 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERS-------EGKTYR-FNG----KTVRVQNVEE-FDWSQVHIA   69 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-------TTCEEE-ETT----EEEEEEEGGG-CCGGGCSEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCC-------CCCcee-ecC----ceeEEecCCh-HHhcCCCEE
Confidence            68999999 89999999999988631 256666552211       011000 111    0122211 22 234689999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |+|+|.....+....+..   .+..+|+++.
T Consensus        70 f~a~g~~~s~~~a~~~~~---~G~~vId~s~   97 (336)
T 2r00_A           70 LFSAGGELSAKWAPIAAE---AGVVVIDNTS   97 (336)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred             EECCCchHHHHHHHHHHH---cCCEEEEcCC
Confidence            999998877666655443   5677887764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.28  E-value=0.063  Score=50.73  Aligned_cols=47  Identities=23%  Similarity=0.332  Sum_probs=35.6

Q ss_pred             hhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       122 ~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..|...+++.|.|+ |-+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   66 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARG--IAVYGCARDAKNVSAAVD   66 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            34555678899995 899999999999998  899999999887665544

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.27  E-value=0.074  Score=52.95  Aligned_cols=95  Identities=12%  Similarity=0.217  Sum_probs=56.9

Q ss_pred             CCeEEEEc-ccHHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLG-GGSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~-~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |+||+|+| .|.+|..+.+ .|.+..+ ..++.++..+. .       |.....+.+..  -.+....++++ +.++|+|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~-------G~~v~~~~g~~--i~~~~~~~~~~-~~~~DvV   69 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-L-------GQAAPSFGGTT--GTLQDAFDLEA-LKALDII   69 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-T-------TSBCCGGGTCC--CBCEETTCHHH-HHTCSEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-C-------CCCccccCCCc--eEEEecCChHH-hcCCCEE
Confidence            47999999 8999999999 5554431 12455555431 1       11111011111  11222234555 5789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCC--eEEEeccC
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGL--PFISLSKG  235 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~--iVVs~snG  235 (420)
                      |.|+|.....+....+..   .+.  +||+.+.-
T Consensus        70 f~a~g~~~s~~~a~~~~~---~G~k~vVID~ss~  100 (367)
T 1t4b_A           70 VTCQGGDYTNEIYPKLRE---SGWQGYWIDAASS  100 (367)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCCCEEEECSST
T ss_pred             EECCCchhHHHHHHHHHH---CCCCEEEEcCChh
Confidence            999998877777766644   343  78887643

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.23  E-value=0.06  Score=55.12  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             CCeEEEEccc----HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGGG----SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaG----amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|+|||++    .+|..+...|.+.| ...|..++...+   .+                .++.+..+++++.+..|+
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~~~---~i----------------~G~~~y~sl~~lp~~~Dl   67 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE---EV----------------QGVKAYKSVKDIPDEIDL   67 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS---EE----------------TTEECBSSTTSCSSCCSE
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCCCC---eE----------------CCEeccCCHHHcCCCCCE
Confidence            5799999998    89999999998875 478877765421   11                134555677776667999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +++++|.....++++++... . =..+|.++.|+.
T Consensus        68 avi~vp~~~~~~~v~e~~~~-G-i~~vv~~s~G~~  100 (457)
T 2csu_A           68 AIIVVPKRFVKDTLIQCGEK-G-VKGVVIITAGFG  100 (457)
T ss_dssp             EEECSCHHHHHHHHHHHHHH-T-CCEEEECCCSST
T ss_pred             EEEecCHHHHHHHHHHHHHc-C-CCEEEEecCCCC
Confidence            99999999999999887654 1 134666788884

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.20  E-value=0.036  Score=52.82  Aligned_cols=74  Identities=26%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceE-EeCC---HHHhccCCc
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-ATTD---AKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~-a~td---~~eal~~aD  201 (420)
                      .+++.|+| +|.+|.+++..|++.|  .+|++++|+.++.+.+.+.-.. .  .+..   -+. -.++   .+++++++|
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G--~~V~i~~R~~~~~~~l~~~~~~-~--~~~~---~~~~D~~~~~~~~~~~~~~D  190 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNK-R--FKVN---VTAAETADDASRAEAVKGAH  190 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH-H--HTCC---CEEEECCSHHHHHHHTTTCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEECCHHHHHHHHHHHHh-c--CCcE---EEEecCCCHHHHHHHHHhCC
Confidence            57899999 9999999999999998  7899999998776655432100 0  0000   011 1112   345566788


Q ss_pred             EEEEccC
Q 014700          202 YCLHAMP  208 (420)
Q Consensus       202 iVIlaVp  208 (420)
                      +||-+.+
T Consensus       191 vlVn~ag  197 (287)
T 1lu9_A          191 FVFTAGA  197 (287)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            8888876

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.18  E-value=0.059  Score=53.42  Aligned_cols=103  Identities=14%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHH-hcCCCCCCCCC-----CC--C-CceEEe--CC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINE-KHCNCRYFPEQ-----KL--P-ENVIAT--TD  192 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r---~~~~~~~i~~-~g~~~~~l~~~-----~l--~-~~i~a~--td  192 (420)
                      ++||+|+|+|.+|.-+.+.|.+.. +.+|..+.-   +.+....+.+ .....++....     .+  . ..+.+.  .|
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p-~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERN-DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCS-SCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCC-CeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            579999999999999999998763 367765542   2332223322 11111111111     11  0 123233  25


Q ss_pred             HHHhc---cCCcEEEEccChhhHHHHHHHhhhcCCCCC--eEEEec
Q 014700          193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (420)
Q Consensus       193 ~~eal---~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~--iVVs~s  233 (420)
                      +++..   .++|+||.|+|.....+...   .+++.+.  +||+..
T Consensus        96 p~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~p  138 (354)
T 3cps_A           96 PAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAP  138 (354)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSC
T ss_pred             hHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCC
Confidence            65531   47999999999776655444   3444555  777664

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.18  E-value=0.1  Score=51.92  Aligned_cols=93  Identities=12%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             CeEEEEcc-cHHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLGG-GSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~-~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |||+|||+ |++|.-|.+ .|.+..+ ..++.++..+..        |.....+.+..  ..+...+++++ +.++|+||
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a--------G~~~~~~~~~~--~~~~~~~~~~~-~~~~Dvvf   69 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--------GVPAPNFGKDA--GMLHDAFDIES-LKQLDAVI   69 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSST--------TSBCCCSSSCC--CBCEETTCHHH-HTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecccc--------CcCHHHhCCCc--eEEEecCChhH-hccCCEEE
Confidence            69999996 999999999 7776431 135555543211        21111122211  12233334544 68999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~--~iVVs~sn  234 (420)
                      +|+|.....+....+..   .+  .+||+.+.
T Consensus        70 ~a~~~~~s~~~~~~~~~---~G~k~~VID~ss   98 (370)
T 3pzr_A           70 TCQGGSYTEKVYPALRQ---AGWKGYWIDAAS   98 (370)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred             ECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence            99998887777766543   34  47888764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.14  E-value=0.017  Score=54.36  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+|||.|.|+|.+|..++..|.+.|  ++|++++|+++
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence            3689999999999999999999998  99999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.07  E-value=0.097  Score=48.67  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=36.2

Q ss_pred             CCeEEEEcc-c-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-G-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ | .+|.++|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRD   65 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHH
Confidence            468999998 8 59999999999998  899999999887665544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.97  E-value=0.047  Score=53.28  Aligned_cols=77  Identities=26%  Similarity=0.453  Sum_probs=51.4

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhc-CCCC-eEEEEeCCHHHHHHHHHhcC--CCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANK-KSQL-KVYMLMRDPAVCQSINEKHC--NCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~a-G~~~-~V~l~~r~~~~~~~i~~~g~--~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      ...|+|.|.|+ |.+|.+++..|++. |  + +|++++|++...+.+.+.-.  ...++.     ..+.-..++++++++
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~-----~Dl~d~~~l~~~~~~   91 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTN--AKKIIVYSRDELKQSEMAMEFNDPRMRFFI-----GDVRDLERLNYALEG   91 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCC--CSEEEEEESCHHHHHHHHHHHCCTTEEEEE-----CCTTCHHHHHHHTTT
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCC--CCEEEEEECChhhHHHHHHHhcCCCEEEEE-----CCCCCHHHHHHHHhc
Confidence            34589999995 99999999999998 8  6 99999999887666554210  101000     000001124456778


Q ss_pred             CcEEEEccC
Q 014700          200 ADYCLHAMP  208 (420)
Q Consensus       200 aDiVIlaVp  208 (420)
                      +|+||.+..
T Consensus        92 ~D~Vih~Aa  100 (344)
T 2gn4_A           92 VDICIHAAA  100 (344)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999998763

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=94.89  E-value=0.13  Score=51.49  Aligned_cols=94  Identities=11%  Similarity=0.165  Sum_probs=57.4

Q ss_pred             CCeEEEEcc-cHHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGG-GSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~-~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .+||+|||+ |.+|.-|.+ .|.+..+ ..++.++..+.        .|.....+.+..  ..+...+++++ +.++|+|
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~--------aG~~~~~~~~~~--~~v~~~~~~~~-~~~vDvv   72 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN--------AGGKAPSFAKNE--TTLKDATSIDD-LKKCDVI   72 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC--------TTSBCCTTCCSC--CBCEETTCHHH-HHTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh--------cCCCHHHcCCCc--eEEEeCCChhH-hcCCCEE
Confidence            579999996 999999999 7776431 13555554321        121111122211  12232334444 5789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCC--CeEEEecc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~--~iVVs~sn  234 (420)
                      |+|+|.....++...+..   .+  .+||+.+.
T Consensus        73 f~a~~~~~s~~~~~~~~~---~G~k~~VID~ss  102 (377)
T 3uw3_A           73 ITCQGGDYTNDVFPKLRA---AGWNGYWIDAAS  102 (377)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCCSEEEECSS
T ss_pred             EECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence            999998887777766543   35  37888774

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.89  E-value=0.027  Score=54.91  Aligned_cols=34  Identities=41%  Similarity=0.571  Sum_probs=31.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ...+|.|||+|.+|.+.|..|++.|  ++|+++++.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~   38 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARD   38 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEecc
Confidence            3468999999999999999999998  899999975

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.84  E-value=0.084  Score=49.17  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+.+..+.+.+
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   71 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLG--ARVVLTARDVEKLRAVER   71 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            367888885 999999999999998  899999999887666544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.82  E-value=0.0095  Score=58.29  Aligned_cols=39  Identities=18%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQ  166 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~~r~~~~~~  166 (420)
                      .+|||.|.|+ |.+|..++..|.+. |  ++|++++|+.+...
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~   63 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTD--WEVFGMDMQTDRLG   63 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSS--CEEEEEESCCTTTG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--CEEEEEeCChhhhh
Confidence            3689999995 99999999999998 7  99999999875433

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.80  E-value=0.052  Score=52.95  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ..+|.|+|+|.+|.+.+..+...|  .+|+..++++++.+.+++.|...           + + .+.++..+..|+||-+
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~-----------v-~-~~~~~~~~~~D~vid~  241 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSMGVKH-----------F-Y-TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHTTCSE-----------E-E-SSGGGCCSCEEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhcCCCe-----------e-c-CCHHHHhcCCCEEEEC
Confidence            468999999999999888888777  79999999988888777755321           1 1 3444433478999999


Q ss_pred             cChh-hHHHHHHHhhhcCCCCCeEEEe
Q 014700          207 MPVQ-FSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       207 Vp~~-~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +... .+...++.+    +++-.++.+
T Consensus       242 ~g~~~~~~~~~~~l----~~~G~iv~~  264 (348)
T 3two_A          242 IPTHYDLKDYLKLL----TYNGDLALV  264 (348)
T ss_dssp             CCSCCCHHHHHTTE----EEEEEEEEC
T ss_pred             CCcHHHHHHHHHHH----hcCCEEEEE
Confidence            9876 565555443    344444444

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.76  E-value=0.069  Score=55.80  Aligned_cols=43  Identities=5%  Similarity=0.189  Sum_probs=39.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .++|.|+|+|.+|..++..|.+.|  ++|++++.+++.++.+.+.
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~~--~~vvvid~~~~~~~~~~~~  169 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESRN--HLFVVVTDNYDQALHLEEQ  169 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTTT--CCEEEEESCHHHHHHHHHS
T ss_pred             CCeEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHh
Confidence            468999999999999999999988  8999999999998888875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.75  E-value=0.022  Score=58.08  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |++|.|||+|.-|.+-|..|+++|  ++|+++.+++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCC
Confidence            689999999999999999999999  99999987653

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.73  E-value=0.013  Score=54.92  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          129 KVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~a--G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ||.|.|+ |.+|.+++..|.+.  |  ++|++.+|+++..+.+...+.  .+...     .+.-..+++++++++|+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~-----D~~d~~~~~~~~~~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPA--SQIVAIVRNPAKAQALAAQGI--TVRQA-----DYGDEAALTSALQGVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTCHHHHHTTC--EEEEC-----CTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCC--ceEEEEEcChHhhhhhhcCCC--eEEEc-----CCCCHHHHHHHHhCCCEEEE
Confidence            5889997 99999999999998  7  999999998765555543321  11000     00001134566788999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus        72 ~a~   74 (286)
T 2zcu_A           72 ISS   74 (286)
T ss_dssp             CC-
T ss_pred             eCC
Confidence            764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.69  E-value=0.25  Score=49.24  Aligned_cols=99  Identities=21%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc--cCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal--~~aDiV  203 (420)
                      ..+|.|+|+|.+|.+.+..+...|  . .|+..++++++.+.+++.|....+...     .-.....+.+..  .++|+|
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~-----~~~~~~~i~~~t~g~g~D~v  286 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAG--ASKVILSEPSEVRRNLAKELGADHVIDPT-----KENFVEAVLDYTNGLGAKLF  286 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHTCSEEECTT-----TSCHHHHHHHHTTTCCCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHcCCCEEEcCC-----CCCHHHHHHHHhCCCCCCEE
Confidence            358999999999998888887777  6 899999999888888776642110000     000000111222  258999


Q ss_pred             EEccChh--hHHHHHHHhhhcCCCCCeEEEe
Q 014700          204 LHAMPVQ--FSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       204 IlaVp~~--~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |-++...  ....+++.+...++++..++.+
T Consensus       287 id~~g~~~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          287 LEATGVPQLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             EECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             EECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence            9999866  3444444442333555555544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.66  E-value=0.01  Score=54.29  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=47.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~--~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..|+|.|.| .|.+|.+++..|++.|  +  +|++++|+++..+.....+.  .++     ...+.-..+.+++++++|+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G--~~~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQG--LFSKVTLIGRRKLTFDEEAYKNV--NQE-----VVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHT--CCSEEEEEESSCCCCCSGGGGGC--EEE-----ECCGGGGGGGGGGGSSCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCC--CCCEEEEEEcCCCCccccccCCc--eEE-----ecCcCCHHHHHHHhcCCCE
Confidence            357999999 5999999999999998  8  99999998653221111110  000     0000001234455678999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      ||.+..
T Consensus        88 vi~~ag   93 (242)
T 2bka_A           88 GFCCLG   93 (242)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998875

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.62  E-value=0.11  Score=51.23  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcC-CCCeEEEE-eC-CHHHHHHHHHhc-CCCCCCCCC-----CC--C-CceEE--eCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MR-DPAVCQSINEKH-CNCRYFPEQ-----KL--P-ENVIA--TTD  192 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG-~~~~V~l~-~r-~~~~~~~i~~~g-~~~~~l~~~-----~l--~-~~i~a--~td  192 (420)
                      ++||+|+|+|.+|..+.+.|.+.+ .+.+|..+ ++ +.+....+.+.. ...++....     .+  . ..+.+  ..|
T Consensus         2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            369999999999999999998761 13566544 33 555555544321 111111111     11  1 12232  346


Q ss_pred             HHHhc---cCCcEEEEccChhhHHHHHHHh
Q 014700          193 AKTAL---LGADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       193 ~~eal---~~aDiVIlaVp~~~l~~vl~~i  219 (420)
                      +++..   .++|+||.|++.....+.....
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~  111 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH  111 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHH
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHH
Confidence            66632   2789999999976555544443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.62  E-value=0.029  Score=48.90  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |++|.|||+|..|..+|..|++.|  .+|+++++.+
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            358999999999999999999998  8999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=94.61  E-value=0.027  Score=54.26  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence            458999999999999999999998  8999999864

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.61  E-value=0.14  Score=50.29  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh---cCCCCeEEEEe-C-CHHHHHHHHHhc-CCCCCCCCC-----CC---CCceEEe--
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLM-R-DPAVCQSINEKH-CNCRYFPEQ-----KL---PENVIAT--  190 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~---aG~~~~V~l~~-r-~~~~~~~i~~~g-~~~~~l~~~-----~l---~~~i~a~--  190 (420)
                      ++||+|+|+|.+|..+.+.|.+   .. +.+|.... + +.+....+.+.. ...++....     .+   ...+.+.  
T Consensus         2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~-~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~   80 (339)
T 2x5j_O            2 TVRVAINGFGRIGRNVVRALYESGRRA-EITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHE   80 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTSGGG-TEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCCC-CEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEec
Confidence            3699999999999999999987   42 25665443 3 455544444311 111111110     01   1123333  


Q ss_pred             CCHHHhc-c--CCcEEEEccChhhHHHHHHHhhhcCCCCC--eEEEec
Q 014700          191 TDAKTAL-L--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (420)
Q Consensus       191 td~~eal-~--~aDiVIlaVp~~~l~~vl~~i~~~l~~~~--iVVs~s  233 (420)
                      .|+++.. +  ++|+||.|++.....+.......   .+.  +||+..
T Consensus        81 ~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~  125 (339)
T 2x5j_O           81 RSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHP  125 (339)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSC
T ss_pred             CChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEecc
Confidence            3565521 2  79999999997665555544433   233  466543

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.61  E-value=0.03  Score=53.83  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=32.8

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+..|+|.|.|+ |-+|.+++..|++.|  ++|++.+|+.+
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCc
Confidence            344689999995 999999999999998  99999998653

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.58  E-value=0.18  Score=49.57  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEe-C-CHHHHHHHHHhc-CCCCCCCCCC--------CC-CceEE--eC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLM-R-DPAVCQSINEKH-CNCRYFPEQK--------LP-ENVIA--TT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~-r-~~~~~~~i~~~g-~~~~~l~~~~--------l~-~~i~a--~t  191 (420)
                      ++||+|+|+|.+|..+.+.|.+.++ ..+|..+. . +.+....+-+.. ..-++.....        +. ..+.+  ..
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~   80 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   80 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence            3699999999999999999987621 24554443 2 444444444321 1111211111        11 11222  23


Q ss_pred             CHHHh-cc--CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          192 DAKTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       192 d~~ea-l~--~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+++. ..  ++|+||.|++.....+......   +.|..+|.++
T Consensus        81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l---~~Gak~V~iS  122 (337)
T 1rm4_O           81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHL---QAGAKKVLIT  122 (337)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHH---HTTCSEEEES
T ss_pred             ChhhCcccccCCCEEEECCCchhhHHHHHHHH---HcCCEEEEEC
Confidence            55442 23  7999999999766555554433   2455555444

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.58  E-value=0.17  Score=50.60  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcC-CCCeEEEE-eC-CHHHHHHHHHhcC-CCCCCCCC-----CC--C-CceEE--eCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MR-DPAVCQSINEKHC-NCRYFPEQ-----KL--P-ENVIA--TTD  192 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG-~~~~V~l~-~r-~~~~~~~i~~~g~-~~~~l~~~-----~l--~-~~i~a--~td  192 (420)
                      ++||+|+|+|.+|..+.+.|.+.+ .+.+|..+ ++ +.+....+.+..- ..++....     .+  . ..+.+  ..|
T Consensus         2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            369999999999999999998751 13566544 33 5555544443211 11111111     11  1 12233  346


Q ss_pred             HHHhc---cCCcEEEEccChhhHHHHHHH
Q 014700          193 AKTAL---LGADYCLHAMPVQFSSSFLEG  218 (420)
Q Consensus       193 ~~eal---~~aDiVIlaVp~~~l~~vl~~  218 (420)
                      +++..   .++|+||.|++.....+....
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~  110 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASK  110 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHH
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHH
Confidence            66532   279999999997655444443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.56  E-value=0.024  Score=57.76  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC---eEEEEe----CC----HH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLM----RD----PA-VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~---~V~l~~----r~----~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      ..||.|+|+|.+|.+++..|.+.|  .   +|++++    |+    .. ..+.+...  ...+......  . ....++.
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~G--~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~--~~~~a~~~~~--~-~~~~~L~  258 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEAG--VKPENVRVVELVNGKPRILTSDLDLEKLFPY--RGWLLKKTNG--E-NIEGGPQ  258 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT--CCGGGEEEEEEETTEEEECCTTSCHHHHSTT--CHHHHTTSCT--T-CCCSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcC--CCcCeEEEEEccCCCcCccccccchhHHHHH--HHHHhhcccc--c-cccccHH
Confidence            468999999999999999999998  5   899999    76    22 11112210  0000000000  0 0123678


Q ss_pred             HhccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ++++++|++|-+++.  ..+..   +....+.++.+|+.+.|..
T Consensus       259 e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLynP~  299 (439)
T 2dvm_A          259 EALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLANPV  299 (439)
T ss_dssp             HHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECCSSS
T ss_pred             HHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECCCCC
Confidence            888999999999997  33221   1223455778888887644

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.52  E-value=0.14  Score=50.22  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhc--CCCCeEEEE-eC-CHHHHHHHHHhc-CCCCCCCCC-----CC--C-CceEEe--CC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANK--KSQLKVYML-MR-DPAVCQSINEKH-CNCRYFPEQ-----KL--P-ENVIAT--TD  192 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~a--G~~~~V~l~-~r-~~~~~~~i~~~g-~~~~~l~~~-----~l--~-~~i~a~--td  192 (420)
                      +||+|+|+|.+|.-+.+.|.+.  . +.+|..+ ++ +.+....+.+.. ...++....     .+  . ..+.+.  .|
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p-~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNP-DIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCT-TCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCC-CeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            4899999999999999999876  3 3677655 43 444444443211 111111110     11  1 133443  25


Q ss_pred             HHHh-cc--CCcEEEEccChhhHHHHHHHhhhcCCCCC--eEEEec
Q 014700          193 AKTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (420)
Q Consensus       193 ~~ea-l~--~aDiVIlaVp~~~l~~vl~~i~~~l~~~~--iVVs~s  233 (420)
                      +++. ..  ++|+||.|+|.....+......   +.+.  +||+..
T Consensus        80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~  122 (332)
T 1hdg_O           80 PSKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAP  122 (332)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred             hHHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCC
Confidence            6553 12  7999999999766555554433   2344  677654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.50  E-value=0.31  Score=47.91  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHHh--cCCCCCCCCCCCCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEK--HCNCRYFPEQKLPE  185 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-------------------~~~~~i~~~--g~~~~~l~~~~l~~  185 (420)
                      ..+|.|||+|..|+.+|..|+.+|. ..++++|.+.                   .+++.+.+.  .++    |..    
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln----p~v----  106 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN----PMV----  106 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC----TTS----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC----CCe----
Confidence            5699999999999999999999995 4899997542                   122222111  011    111    


Q ss_pred             ceEEe-----CCHHHhccCCcEEEEccChhhHHHHHHHhh
Q 014700          186 NVIAT-----TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       186 ~i~a~-----td~~eal~~aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      .+.+.     ...++.+.++|+||.|+-+...+..+.+..
T Consensus       107 ~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~  146 (346)
T 1y8q_A          107 DVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC  146 (346)
T ss_dssp             EEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred             EEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence            11111     123456789999999988766665565543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.49  E-value=0.054  Score=55.91  Aligned_cols=71  Identities=17%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             hcCCCeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +..++||.|||.|..|.+ +|..|.+.|  ++|+++|..+ ...+.+.+.|+..            ..-.+++ .+.++|
T Consensus        19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~g~~~~-~~~~~d   83 (494)
T 4hv4_A           19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPNSVTQHLTALGAQI------------YFHHRPE-NVLDAS   83 (494)
T ss_dssp             ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCEE------------ESSCCGG-GGTTCS
T ss_pred             hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHCCCEE------------ECCCCHH-HcCCCC
Confidence            445689999999999995 899999998  9999999654 3445666655321            1112333 367899


Q ss_pred             EEEEc--cCh
Q 014700          202 YCLHA--MPV  209 (420)
Q Consensus       202 iVIla--Vp~  209 (420)
                      +||+.  +|.
T Consensus        84 ~vV~Spgi~~   93 (494)
T 4hv4_A           84 VVVVSTAISA   93 (494)
T ss_dssp             EEEECTTSCT
T ss_pred             EEEECCCCCC
Confidence            99985  553

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=94.48  E-value=0.13  Score=50.33  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=58.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEe-C-CHHHHHHHHHhcCCCCCCCCC------CCC---CceEEe--CCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-R-DPAVCQSINEKHCNCRYFPEQ------KLP---ENVIAT--TDA  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~-r-~~~~~~~i~~~g~~~~~l~~~------~l~---~~i~a~--td~  193 (420)
                      ++||+|+|.|.+|.-+.+.|.+.. +.+|.... + +.+....+.+..-....+++.      .+.   ..+.+.  .|+
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~-~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRS-DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCC-CeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            369999999999999999998764 35665443 3 344444443321111111111      010   112222  245


Q ss_pred             HHhc---cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          194 KTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       194 ~eal---~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      ++.-   .++|+||.|+|.....+......   +.+..+|.++.
T Consensus        80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdlSa  120 (330)
T 1gad_O           80 ANLKWDEVGVDVVAEATGLFLTDETARKHI---TAGAKKVVMTG  120 (330)
T ss_dssp             GGGCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESS
T ss_pred             hhCccccccCCEEEECCCccccHHHHHHHH---HCCCEEEEECC
Confidence            5421   47999999999766555444332   34555555554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.48  E-value=0.01  Score=58.64  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=32.6

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+|+|.|.|+ |.+|..++..|++.|  ++|++++|++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~   64 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKN   64 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence            3689999997 999999999999998  99999999764

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.47  E-value=0.058  Score=52.21  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|+|.|.|+ |.+|..++..|++.|  ++|++++|++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~   61 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFA   61 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCS
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence            4689999997 999999999999998  9999999864

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=94.45  E-value=0.091  Score=54.66  Aligned_cols=74  Identities=8%  Similarity=-0.043  Sum_probs=48.6

Q ss_pred             hhhcCCCeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          122 DILERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       122 ~~~~~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~--~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      +++-..++|.|||.|..|.+ +|..|.+.|  ++|+++|...  ...+.+.+.|+.            +..-.+++....
T Consensus        14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V~~sD~~~~~~~~~~L~~~gi~------------~~~G~~~~~~~~   79 (524)
T 3hn7_A           14 NLYFQGMHIHILGICGTFMGSLALLARALG--HTVTGSDANIYPPMSTQLEQAGVT------------IEEGYLIAHLQP   79 (524)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCCTTHHHHHHHTTCE------------EEESCCGGGGCS
T ss_pred             ceeecCCEEEEEEecHhhHHHHHHHHHhCC--CEEEEECCCCCcHHHHHHHHCCCE------------EECCCCHHHcCC
Confidence            34555689999999999986 788888888  9999999753  345567665532            111124444345


Q ss_pred             CCcEEEEc--cCh
Q 014700          199 GADYCLHA--MPV  209 (420)
Q Consensus       199 ~aDiVIla--Vp~  209 (420)
                      ++|+||..  +|.
T Consensus        80 ~~d~vV~Spgi~~   92 (524)
T 3hn7_A           80 APDLVVVGNAMKR   92 (524)
T ss_dssp             CCSEEEECTTCCT
T ss_pred             CCCEEEECCCcCC
Confidence            78999985  553

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.43  E-value=0.025  Score=54.73  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~---aG~~~~V~l~~r~~  162 (420)
                      |++|.|||+|..|.+.|..|++   .|  ++|+++++.+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCC
Confidence            4689999999999999999999   88  8999998763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.40  E-value=0.37  Score=49.18  Aligned_cols=72  Identities=10%  Similarity=0.029  Sum_probs=48.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|.|||+|.+|..-+..|.+.|  .+|++++.+. +.++.+.+.+ ...+.         .-.-+.+ .+.++|+||.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~~~~~~~~l~~~~-~i~~~---------~~~~~~~-~l~~~~lVi~   78 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEG-MLTLV---------EGPFDET-LLDSCWLAIA   78 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTT-SCEEE---------ESSCCGG-GGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCCCCHHHHHHHhcC-CEEEE---------ECCCCcc-ccCCccEEEE
Confidence            579999999999999999999998  8999999753 2334443322 11100         0001222 3678999999


Q ss_pred             ccChhh
Q 014700          206 AMPVQF  211 (420)
Q Consensus       206 aVp~~~  211 (420)
                      ++....
T Consensus        79 at~~~~   84 (457)
T 1pjq_A           79 ATDDDT   84 (457)
T ss_dssp             CCSCHH
T ss_pred             cCCCHH
Confidence            887653

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.39  E-value=0.035  Score=52.50  Aligned_cols=34  Identities=32%  Similarity=0.546  Sum_probs=31.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |||.|.|+ |-+|+.++..|.+.|  |+|+++.|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence            89999997 999999999999999  99999999753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.37  E-value=0.036  Score=54.95  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~   56 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVK   56 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            479999999999999999999998  8999999875

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.34  E-value=0.032  Score=56.18  Aligned_cols=34  Identities=12%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +++|.|||+|..|.++|..|+++|  ++|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence            358999999999999999999999  9999999764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.31  E-value=0.021  Score=55.08  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=44.9

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ...|+|.|.|+ |.+|.+++..|++.|  ++|++++|+++.      .+  ..++..     .+.-..+.++++.++|+|
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~------~~--~~~~~~-----Dl~d~~~~~~~~~~~d~v   81 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG------TG--GEEVVG-----SLEDGQALSDAIMGVSAV   81 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS------SC--CSEEES-----CTTCHHHHHHHHTTCSEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC------CC--ccEEec-----CcCCHHHHHHHHhCCCEE
Confidence            34689999997 999999999999998  999999998642      11  111000     000011345667899999


Q ss_pred             EEccC
Q 014700          204 LHAMP  208 (420)
Q Consensus       204 IlaVp  208 (420)
                      |.+..
T Consensus        82 ih~A~   86 (347)
T 4id9_A           82 LHLGA   86 (347)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            98653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.26  E-value=0.037  Score=54.28  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      .|+|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..  +.+.... ....+.+ .   .+.-..+++++++++|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~l~~~~-~v~~v~~-D---~l~d~~~l~~~~~~~d~V   77 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAIP-NVTLFQG-P---LLNNVPLMDTLFEGAHLA   77 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTST-TEEEEES-C---CTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCChhhHHHHhhcC-CcEEEEC-C---ccCCHHHHHHHHhcCCEE
Confidence            578999996 999999999999988  8999999986543  3333210 1000000 0   000001245567899999


Q ss_pred             EEccC
Q 014700          204 LHAMP  208 (420)
Q Consensus       204 IlaVp  208 (420)
                      |.+..
T Consensus        78 i~~a~   82 (352)
T 1xgk_A           78 FINTT   82 (352)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            97764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.26  E-value=0.056  Score=51.67  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|..-+..|.+.|  ++|++++.+.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence            589999999999999999999999  8999998653

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=94.23  E-value=0.031  Score=55.27  Aligned_cols=92  Identities=14%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~-~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVI  204 (420)
                      +||+||| .|..|.-|.+.|.+..+. .++.++.....       .|.... +.+    ..+.+. .+. +.+.++|+||
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~-------aG~~~~-~~~----~~~~~~~~~~-~~~~~~Dvvf   68 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARS-------QGRKLA-FRG----QEIEVEDAET-ADPSGLDIAL   68 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-------SSCEEE-ETT----EEEEEEETTT-SCCTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECccc-------CCCcee-ecC----CceEEEeCCH-HHhccCCEEE
Confidence            6999999 599999999999886311 24555543221       121111 111    112221 122 3367899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+|.....+....+..   .+..||+++.-
T Consensus        69 ~a~~~~~s~~~a~~~~~---~G~~vID~Sa~   96 (344)
T 3tz6_A           69 FSAGSAMSKVQAPRFAA---AGVTVIDNSSA   96 (344)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             ECCChHHHHHHHHHHHh---CCCEEEECCCc
Confidence            99998887777766543   57788888753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.19  E-value=0.13  Score=49.98  Aligned_cols=83  Identities=13%  Similarity=0.051  Sum_probs=55.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc------c
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------L  198 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal------~  198 (420)
                      ...+|.|+|+|.+|.+.+..+...|  . +|+..++++++.+.+++.|......    ..     ..+..+.+      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~~Ga~~~~~----~~-----~~~~~~~v~~~~~g~  235 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKKVGADYVIN----PF-----EEDVVKEVMDITDGN  235 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHHHTCSEEEC----TT-----TSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEEEC----CC-----CcCHHHHHHHHcCCC
Confidence            3468999999999999999888887  7 8999999998888777655321100    00     01222222      2


Q ss_pred             CCcEEEEccCh-hhHHHHHHHh
Q 014700          199 GADYCLHAMPV-QFSSSFLEGI  219 (420)
Q Consensus       199 ~aDiVIlaVp~-~~l~~vl~~i  219 (420)
                      .+|+||-++.. ..+...++.+
T Consensus       236 g~D~vid~~g~~~~~~~~~~~l  257 (348)
T 2d8a_A          236 GVDVFLEFSGAPKALEQGLQAV  257 (348)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHE
T ss_pred             CCCEEEECCCCHHHHHHHHHHH
Confidence            58999999985 4455554444

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.18  E-value=0.34  Score=45.52  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   70 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMG--AHVVVTARSKETLQKVVS   70 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            3578999997 899999999999998  899999999877665543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.17  E-value=0.34  Score=47.17  Aligned_cols=96  Identities=9%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~aD  201 (420)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|....+....  ...  ......+..     ...|
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~--~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDP--AKE--EESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCT--TTS--CHHHHHHHHHHHSSSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCcc--ccc--HHHHHHHHhccccCCCCC
Confidence            468999999999999888887777  78999999998888777655321100000  000  000111212     3689


Q ss_pred             EEEEccChh-hHHHHHHHhhhcCCCCCeEEEe
Q 014700          202 YCLHAMPVQ-FSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       202 iVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +||-++... .+...+    ..++++..++.+
T Consensus       243 ~vid~~g~~~~~~~~~----~~l~~~G~iv~~  270 (352)
T 1e3j_A          243 VTIDCSGNEKCITIGI----NITRTGGTLMLV  270 (352)
T ss_dssp             EEEECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred             EEEECCCCHHHHHHHH----HHHhcCCEEEEE
Confidence            999999864 344444    344455555544

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=94.17  E-value=0.3  Score=45.22  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=62.2

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ...||..|+|+ |.||..++......+  +++. .+++...                           ++    +.++|+
T Consensus        10 ~~~~~~~v~Ga~GrMG~~i~~~~~~~~--~elv~~id~~~~---------------------------~~----l~~~DV   56 (228)
T 1vm6_A           10 HHHMKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVNGV---------------------------EE----LDSPDV   56 (228)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETTEE---------------------------EE----CSCCSE
T ss_pred             hccceeEEEEecCHHHHHHHHHHhCCC--CEEEEEEcCCCc---------------------------cc----ccCCCE
Confidence            34689999998 999999988665555  6765 3454321                           01    236899


Q ss_pred             EE-EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          203 CL-HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       203 VI-laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      +| +..|. .+.+.++....   .+..+|..+.|+..+..    +.+.+. ..   ...++..|++...
T Consensus        57 vIDFT~P~-a~~~~~~~~~~---~g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vv~apNfSlG  113 (228)
T 1vm6_A           57 VIDFSSPE-ALPKTVDLCKK---YRAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYNFSIG  113 (228)
T ss_dssp             EEECSCGG-GHHHHHHHHHH---HTCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCCCHH
T ss_pred             EEECCCHH-HHHHHHHHHHH---cCCCEEEeCCCCCHHHH----HHHHHH-Hh---hCCEEEeccccHH
Confidence            99 56565 44444444333   35667777889886532    233333 22   2568888998764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.16  E-value=0.34  Score=45.05  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.| .|.+|.++|..|++.|  ++|.+.+|+++..+.+.
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   54 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASK   54 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            46788888 5899999999999998  89999999987665544

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.15  E-value=0.039  Score=53.87  Aligned_cols=33  Identities=27%  Similarity=0.566  Sum_probs=30.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..+|.|||+|..|.+.|..|++.|  ++|+++++.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~   37 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKR   37 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence            458999999999999999999998  899999986

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.14  E-value=0.038  Score=55.04  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |+|.|||+|..|.+.|..|+++|  ++|+++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            68999999999999999999998  8999998864

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=94.11  E-value=0.36  Score=45.57  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+.+..+.+.+
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   60 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAAD   60 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            478999985 899999999999998  899999999876655443

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=94.07  E-value=0.085  Score=54.85  Aligned_cols=43  Identities=30%  Similarity=0.376  Sum_probs=36.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+++.|+|+|.+|.+++..|++.|  .+|++++|+.++++.+.+.
T Consensus       364 ~k~vlV~GaGGig~aia~~L~~~G--~~V~i~~R~~~~a~~la~~  406 (523)
T 2o7s_A          364 SKTVVVIGAGGAGKALAYGAKEKG--AKVVIANRTYERALELAEA  406 (523)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHHC--C-CEEEESSHHHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence            458999999999999999999999  7999999999888777653

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=94.03  E-value=0.043  Score=54.55  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCe-EEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~-V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|++.|  ++ |+++++.+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCC
Confidence            468999999999999999999998  88 99999864

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.03  E-value=0.027  Score=54.10  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhc-CCCCeEEEEeCCHHHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVC  165 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~a-G~~~~V~l~~r~~~~~  165 (420)
                      |||.|.|+ |.+|..++..|.+. |  ++|++++|+++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~   38 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAI   38 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGG
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCC--CEEEEEeCCcchH
Confidence            68999997 99999999999997 7  8999999987543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.01  E-value=0.051  Score=51.62  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .|+|.|.|+ |.+|.+++..|++.|  ++|++.+|+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCC
Confidence            479999997 999999999999998  99999998754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.00  E-value=0.24  Score=46.07  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=35.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   48 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCK   48 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence            467999995 899999999999998  99999999987665543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.98  E-value=0.049  Score=53.93  Aligned_cols=34  Identities=29%  Similarity=0.555  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            358999999999999999999998  8999999865

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=93.98  E-value=0.14  Score=50.19  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eC-CHHHHHHHHHhcC-CCCCCCCC-----CC--C-CceEEe--CCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR-DPAVCQSINEKHC-NCRYFPEQ-----KL--P-ENVIAT--TDA  193 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r-~~~~~~~i~~~g~-~~~~l~~~-----~l--~-~~i~a~--td~  193 (420)
                      |+||+|+|+|.+|.-+.+.|.+.. +.+|... ++ +.+....+.+..- ..++....     .+  . ..+.+.  .|+
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~-~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNP-DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCT-TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCC-CeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            469999999999999999998763 2566544 33 4444444442210 11110000     01  1 133443  256


Q ss_pred             HHh-cc--CCcEEEEccChhhHHHHHHHhhhcCCCCC--eEEEec
Q 014700          194 KTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (420)
Q Consensus       194 ~ea-l~--~aDiVIlaVp~~~l~~vl~~i~~~l~~~~--iVVs~s  233 (420)
                      ++. ..  ++|+||.|+|.....+......   +.+.  +||+..
T Consensus        80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l---~~Gak~vVId~p  121 (334)
T 3cmc_O           80 ENLAWGEIGVDIVVESTGRFTKREDAAKHL---EAGAKKVIISAP  121 (334)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred             hhcCcccCccCEEEECCCchhhHHHHHHHH---HCCCCEEEEeCC
Confidence            553 12  7999999999766555444433   2344  676654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.98  E-value=0.038  Score=54.42  Aligned_cols=34  Identities=41%  Similarity=0.602  Sum_probs=31.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ...|.|||+|..|.+.|..|+++|  ++|+++++.+
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~   37 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERG--HRVLVLERHT   37 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            358999999999999999999998  8999999864

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.97  E-value=0.16  Score=47.65  Aligned_cols=42  Identities=19%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   46 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAG--AKILLGARRQARIEAIAT   46 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888886 889999999999999  899999999887666554

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.92  E-value=0.058  Score=54.94  Aligned_cols=84  Identities=15%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHH----HHHHhcCCCCCCCCCCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQ----SINEKHCNCRYFPEQKL  183 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~-------------------~~~~----~i~~~g~~~~~l~~~~l  183 (420)
                      ..||.|||+|..|+.++..|+.+|. -+++++|.+.                   .+++    .+++.  +    |+..+
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGv-g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~l--n----p~v~v  112 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR--V----PNCNV  112 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTC-CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH--S----TTCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhh--C----CCCEE
Confidence            5699999999999999999999995 4899997552                   1222    22221  1    11111


Q ss_pred             ---CCceEEeCCHHHhccCCcEEEEccChhhHHHHHHHh
Q 014700          184 ---PENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       184 ---~~~i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i  219 (420)
                         +..+  .....+.++++|+||.|+-....+..+.+.
T Consensus       113 ~~~~~~i--~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~  149 (434)
T 1tt5_B          113 VPHFNKI--QDFNDTFYRQFHIIVCGLDSIIARRWINGM  149 (434)
T ss_dssp             EEEESCG--GGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             EEEeccc--chhhHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence               1111  111135678999999999877666555554

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.87  E-value=0.047  Score=54.16  Aligned_cols=33  Identities=33%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |+|.|||+|..|.+.|..|+++|  ++|+++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCC
Confidence            68999999999999999999998  9999998764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.87  E-value=0.32  Score=47.44  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeC-----CHHHhc---
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-----DAKTAL---  197 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~t-----d~~eal---  197 (420)
                      ..+|.|+|+|.+|...+..+...|  . +|++.++++++.+.+++.|...           +....     +..+.+   
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~-----------vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADL-----------VLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSE-----------EEECSSCCHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCE-----------EEcCcccccchHHHHHHHH
Confidence            468999999999999888777777  6 8999999998888777655321           11111     111111   


Q ss_pred             --cCCcEEEEccChh-hHHHHHHHhhhcCCCCCeEEEe
Q 014700          198 --LGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       198 --~~aDiVIlaVp~~-~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                        .+.|+||-++... .+...+    ..++++..++.+
T Consensus       239 ~~~g~D~vid~~g~~~~~~~~~----~~l~~~G~iv~~  272 (356)
T 1pl8_A          239 LGCKPEVTIECTGAEASIQAGI----YATRSGGTLVLV  272 (356)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred             hCCCCCEEEECCCChHHHHHHH----HHhcCCCEEEEE
Confidence              3689999999864 344443    344555555544

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.84  E-value=0.038  Score=53.61  Aligned_cols=32  Identities=38%  Similarity=0.583  Sum_probs=29.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      -|.|||+|..|.+.|..|+++|  ++|+++++.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            4999999999999999999999  9999999865

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.76  E-value=0.19  Score=44.47  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g  172 (420)
                      .++|.|+| +|.+|.+++..+...|  .+|++.++++++.+.+.+.|
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~g   83 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLG   83 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTC
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC
Confidence            47899999 5999999999999888  89999999988776665533

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.74  E-value=0.45  Score=44.23  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |-+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   50 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAG--AAVAFCARDGERLRAAES   50 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888885 899999999999998  899999999887665544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=93.71  E-value=0.48  Score=40.46  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc----cCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL----LGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal----~~aDi  202 (420)
                      .++|.-||+|. |. ++..|++...+.+|+.+|.+++.++..++.-..      ..++.++....|..+.+    ...|+
T Consensus        26 ~~~vldiG~G~-G~-~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~D~   97 (178)
T 3hm2_A           26 HETLWDIGGGS-GS-IAIEWLRSTPQTTAVCFEISEERRERILSNAIN------LGVSDRIAVQQGAPRAFDDVPDNPDV   97 (178)
T ss_dssp             TEEEEEESTTT-TH-HHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT------TTCTTSEEEECCTTGGGGGCCSCCSE
T ss_pred             CCeEEEeCCCC-CH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH------hCCCCCEEEecchHhhhhccCCCCCE
Confidence            46899999997 43 455555541127999999999877666553111      01111232222321222    46899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      |++.-.... ..+++++...++++..++..
T Consensus        98 i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~  126 (178)
T 3hm2_A           98 IFIGGGLTA-PGVFAAAWKRLPVGGRLVAN  126 (178)
T ss_dssp             EEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred             EEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence            998776554 66788888888888776543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.68  E-value=0.28  Score=44.82  Aligned_cols=41  Identities=12%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   52 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVV   52 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            478999996 999999999999998  89999999987665544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=93.66  E-value=0.087  Score=50.48  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ||+|.|.| .|.+|..++..|++.|  ++|++.+|.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~   34 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQG--IDLIVFDNL   34 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCC
Confidence            57999999 5999999999999998  999999874

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=93.64  E-value=0.13  Score=49.18  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      +|+|.|.| +|-+|++++..|.+.|  ++|++..|+.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G--~~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKG--YAVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCC--CEEEEEEcCcc
Confidence            57999999 5999999999999998  99998888754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.64  E-value=0.059  Score=53.31  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            468999999999999999999998  8999998764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.64  E-value=0.45  Score=43.90  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   54 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYG--ATVILLGRNEEKLRQVAS   54 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888886 899999999999998  899999999887665543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.63  E-value=0.33  Score=44.33  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKG--ATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888895 899999999999998  899999999887666544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.61  E-value=0.31  Score=44.72  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=34.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDEAMATKAV   54 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467999985 999999999999998  89999999987655443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.60  E-value=0.21  Score=48.22  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=60.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHh-ccCCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA-LLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~ea-l~~aDi  202 (420)
                      ..++|..||+|..|.+. ..+++ .|  .+|+.+|.+++.++..++.....      .+ .++.+ ..|..+. -...|+
T Consensus       122 ~g~rVLDIGcG~G~~ta-~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~------gl-~~v~~v~gDa~~l~d~~FDv  191 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTG-ILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL------GV-DGVNVITGDETVIDGLEFDV  191 (298)
T ss_dssp             TTCEEEEECCCSSCHHH-HHHHHTTC--CEEEEEESSHHHHHHHHHHHHHH------TC-CSEEEEESCGGGGGGCCCSE
T ss_pred             CcCEEEEECCCccHHHH-HHHHHccC--CEEEEEECCHHHHHHHHHHHHhc------CC-CCeEEEECchhhCCCCCcCE
Confidence            45799999999865332 22333 35  79999999998776655431100      01 13332 2233322 246899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      |+++.-......+++++...++++..++.
T Consensus       192 V~~~a~~~d~~~~l~el~r~LkPGG~Lvv  220 (298)
T 3fpf_A          192 LMVAALAEPKRRVFRNIHRYVDTETRIIY  220 (298)
T ss_dssp             EEECTTCSCHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEECCCccCHHHHHHHHHHHcCCCcEEEE
Confidence            99876555667888999999998876654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.60  E-value=0.21  Score=48.98  Aligned_cols=83  Identities=14%  Similarity=0.006  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh----c--cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----L--LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea----l--~~a  200 (420)
                      ..+|.|+|+|.+|.+.+..+...|  .+|++.++++++.+.+++.|.....-..         ..+..+.    .  .+.
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~vi~~~---------~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFALGADHGINRL---------EEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHHTTCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHcCCCEEEcCC---------cccHHHHHHHHhCCCCc
Confidence            368999999999999888888877  7999999999888887776542110000         0122221    1  257


Q ss_pred             cEEEEccChhhHHHHHHHhh
Q 014700          201 DYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~  220 (420)
                      |+||-++....+...++.+.
T Consensus       259 D~vid~~g~~~~~~~~~~l~  278 (363)
T 3uog_A          259 DHILEIAGGAGLGQSLKAVA  278 (363)
T ss_dssp             EEEEEETTSSCHHHHHHHEE
T ss_pred             eEEEECCChHHHHHHHHHhh
Confidence            89988888666666555444

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.53  E-value=0.45  Score=46.63  Aligned_cols=93  Identities=12%  Similarity=0.028  Sum_probs=57.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~a  200 (420)
                      ..+|.|+|+|.+|...+..+...|  . .|+..++++++.+.+++.|......    ...   ...+..+.+     ..+
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~----~~~---~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIELGATECLN----PKD---YDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHTTCSEEEC----GGG---CSSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHcCCcEEEe----ccc---ccchHHHHHHHHhCCCC
Confidence            368999999999999888877777  6 7999999988888777655321100    000   001222222     268


Q ss_pred             cEEEEccCh-hhHHHHHHHhhhcCCCC-CeEEEe
Q 014700          201 DYCLHAMPV-QFSSSFLEGISDYVDPG-LPFISL  232 (420)
Q Consensus       201 DiVIlaVp~-~~l~~vl~~i~~~l~~~-~iVVs~  232 (420)
                      |+||-++.. ..+...+    ..++++ -.++.+
T Consensus       263 Dvvid~~g~~~~~~~~~----~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGRIETMMNAL----QSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred             CEEEECCCCHHHHHHHH----HHHhcCCCEEEEE
Confidence            999999975 3344333    444555 444443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.47  E-value=0.4  Score=44.69  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=35.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.+
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~   73 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAA   73 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEEcCHHHHHHHHH
Confidence            468999985 899999999999998  899999999876655443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.47  E-value=0.055  Score=53.53  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ++|.|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            58999999999999999999998  8999999864

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.47  E-value=0.24  Score=45.51  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~-aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .+++|.|.|+ |.+|.+++..|++ .|  ++|++.+|+.+..+.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g--~~V~~~~r~~~~~~~~~   46 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAV   46 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcC--CeEEEEeCChHHHHHHH
Confidence            3568899985 9999999999999 88  89999999987655543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=93.46  E-value=0.067  Score=53.15  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .|+|+|||+|..|.+.|..|++.|  ++|+++++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~   36 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRD   36 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            379999999999999999999998  9999999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.46  E-value=0.24  Score=48.01  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=55.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh----ccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----LLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea----l~~aDi  202 (420)
                      ..+|.|+|+|.+|.+.+..+...|  .+|+..++++++.+.+++.|.... +   ...     ..+..+.    ..+.|+
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~-~---d~~-----~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGADLV-V---NPL-----KEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCSEE-E---CTT-----TSCHHHHHHHHHSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHCCCCEE-e---cCC-----CccHHHHHHHHhCCCCE
Confidence            468999999999999999888888  799999999988887776553210 0   000     0122221    246899


Q ss_pred             EEEccCh-hhHHHHHHHh
Q 014700          203 CLHAMPV-QFSSSFLEGI  219 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i  219 (420)
                      ||-++.. ..++..++.+
T Consensus       234 vid~~g~~~~~~~~~~~l  251 (339)
T 1rjw_A          234 AVVTAVSKPAFQSAYNSI  251 (339)
T ss_dssp             EEESSCCHHHHHHHHHHE
T ss_pred             EEECCCCHHHHHHHHHHh
Confidence            9999885 4454444443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.44  E-value=0.17  Score=49.06  Aligned_cols=82  Identities=20%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc----cCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL----LGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal----~~aDi  202 (420)
                      ..+|.|+|+|.+|.+.+..+...|  .+|+..++++++.+.+++.|........         ..+..+.+    ...|+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~i~~~---------~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAEVAVNAR---------DTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETT---------TSCHHHHHHHHHSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCEEEeCC---------CcCHHHHHHHhCCCCCE
Confidence            468999999999999888888887  7999999999988888776532110000         01222222    36899


Q ss_pred             EEEccCh-hhHHHHHHHh
Q 014700          203 CLHAMPV-QFSSSFLEGI  219 (420)
Q Consensus       203 VIlaVp~-~~l~~vl~~i  219 (420)
                      ||.++.. ..+...++.+
T Consensus       236 vid~~g~~~~~~~~~~~l  253 (340)
T 3s2e_A          236 VLVTAVSPKAFSQAIGMV  253 (340)
T ss_dssp             EEESSCCHHHHHHHHHHE
T ss_pred             EEEeCCCHHHHHHHHHHh
Confidence            9998874 3344444443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.40  E-value=0.28  Score=44.54  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      +++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+.+..+.+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   44 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDG--YALALGARSVDRLEKIAH   44 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888995 889999999999998  899999999887665543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=93.39  E-value=0.3  Score=44.82  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~   51 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREG--AAVVVADINAEAAEAVAK   51 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence            467889996 899999999999998  899999999887766554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.38  E-value=0.059  Score=52.51  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|..|.+.|..|++.|  ++|+++++..
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT   50 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCC
Confidence            468999999999999999999998  8999999753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=93.38  E-value=0.055  Score=53.25  Aligned_cols=34  Identities=18%  Similarity=0.402  Sum_probs=31.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhc--CCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~a--G~~~~V~l~~r~~~  163 (420)
                      |+|.|||+|..|.++|..|++.  |  ++|+++++.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G--~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPL--WAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTT--SEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCC--CCEEEEECCCC
Confidence            5899999999999999999998  8  89999998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.35  E-value=0.32  Score=47.77  Aligned_cols=93  Identities=12%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~a  200 (420)
                      ..+|.|+|+|.+|...+..+...|  . +|+..++++++.+.+++.|.....      ... ....+..+.+     ..+
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi------~~~-~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKALGATDCL------NPR-ELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEE------CGG-GCSSCHHHHHHHHHTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCcEEE------ccc-cccchHHHHHHHHhCCCc
Confidence            358999999999999888877777  6 799999999888877765532110      000 0001222222     268


Q ss_pred             cEEEEccCh-hhHHHHHHHhhhcCCCC-CeEEEe
Q 014700          201 DYCLHAMPV-QFSSSFLEGISDYVDPG-LPFISL  232 (420)
Q Consensus       201 DiVIlaVp~-~~l~~vl~~i~~~l~~~-~iVVs~  232 (420)
                      |+||-++.. ..+...+    ..++++ -.++.+
T Consensus       267 Dvvid~~G~~~~~~~~~----~~l~~~~G~iv~~  296 (376)
T 1e3i_A          267 DYSLDCAGTAQTLKAAV----DCTVLGWGSCTVV  296 (376)
T ss_dssp             SEEEESSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred             cEEEECCCCHHHHHHHH----HHhhcCCCEEEEE
Confidence            999999975 3344433    444454 444443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.34  E-value=0.49  Score=43.12  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHG--ASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHH
Confidence            468899996 899999999999998  899999999887666544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.31  E-value=0.068  Score=52.13  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~   36 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFD   36 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence            358999999999999999999998  8999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.29  E-value=0.066  Score=53.17  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~---aG~~~~V~l~~r~~  162 (420)
                      |++|.|||+|..|.+.|..|++   .|  ++|+++++++
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~   37 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSR   37 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCC
Confidence            4789999999999999999999   77  8999999875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.29  E-value=0.42  Score=44.42  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+++.|.|+ |-+|.++|..|++.|  ++|.+.+|+.+..+.+.+.                     +.+  .+.++.++
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~---------------------~~~--~~~~~~~~   65 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQG--ADLVLAARTVERLEDVAKQ---------------------VTD--TGRRALSV   65 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            467889996 789999999999999  8999999998876665542                     111  12233333


Q ss_pred             ccC---hhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMP---VQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp---~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ..-   ...++.+++++...+.+=.++|+..
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            322   3456777777766555445666654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.27  E-value=0.07  Score=52.33  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC
Confidence            468999999999999999999998  8999999764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.23  E-value=0.065  Score=51.18  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +++|.|||+|..|.+.|..|++.|  ++|+++++.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~   38 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLP   38 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            468999999999999999999988  8999999864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.23  E-value=0.11  Score=50.00  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      +|+|.|.|+ |.+|..++..|++.|  ++|++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~   35 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNF   35 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecC
Confidence            479999995 999999999999998  999999874

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.22  E-value=0.033  Score=57.65  Aligned_cols=63  Identities=25%  Similarity=0.265  Sum_probs=45.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +|||.|.| .|.+|..++..|.+.|  ++|++++|++...+.     .    .-+  +      .+...+++.++|+||.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~~-----v----~~d--~------~~~~~~~l~~~D~Vih  207 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPGK-----R----FWD--P------LNPASDLLDGADVLVH  207 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTTC-----E----ECC--T------TSCCTTTTTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCccc-----e----eec--c------cchhHHhcCCCCEEEE
Confidence            78999999 5999999999999998  999999998643110     0    000  0      0122455778999998


Q ss_pred             ccC
Q 014700          206 AMP  208 (420)
Q Consensus       206 aVp  208 (420)
                      +..
T Consensus       208 ~A~  210 (516)
T 3oh8_A          208 LAG  210 (516)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.16  E-value=0.066  Score=54.75  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .+|.|||+|.-|.+.|..|++.|  ++|+++++.
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~   57 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKR   57 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            47999999999999999999998  899999975

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.14  E-value=0.07  Score=52.15  Aligned_cols=31  Identities=19%  Similarity=0.425  Sum_probs=29.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCC-eEEEEeC
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQL-KVYMLMR  160 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~-~V~l~~r  160 (420)
                      |||.|.| .|.+|..++..|.+.|  + +|+..+|
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g--~~~v~~~d~   33 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTT--DHHIFEVHR   33 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHC--CCEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CCEEEEECC
Confidence            7999999 5999999999999998  7 9999998

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.11  E-value=0.45  Score=44.18  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=35.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |-+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAG--ANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888884 899999999999999  899999999887665544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.11  E-value=0.075  Score=49.47  Aligned_cols=33  Identities=15%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      +++|.|||+|.-|.+.|..|++.|  ++|+++++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~   34 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRAR--KNILLVDAG   34 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCC
Confidence            358999999999999999999998  899999974

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=93.11  E-value=0.57  Score=43.71  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   73 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELA   73 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEECChHHHHHHH
Confidence            467899985 999999999999998  89999999987665544

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.08  E-value=0.61  Score=43.88  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G--~~V~~~~r~~~~~~~~~   67 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATA   67 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            468999995 899999999999998  89999999987665544

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.04  E-value=0.56  Score=42.55  Aligned_cols=41  Identities=17%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAG--STVIITGTSGERAKAVA   48 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence            467889985 999999999999998  89999999987665544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.04  E-value=0.35  Score=45.60  Aligned_cols=42  Identities=21%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   75 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEG--YSVVITGRRPDVLDAAAG   75 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888885 899999999999998  899999999887665544

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.02  E-value=0.52  Score=44.63  Aligned_cols=84  Identities=12%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~---~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|.|.|+ |.+|.++|..|++.|  +   .|.+.+|+.+..+.+.+.                     +.+...+.++
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G--~~~~~V~~~~r~~~~~~~~~~~---------------------l~~~~~~~~~   89 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEAS--NGDMKLILAARRLEKLEELKKT---------------------IDQEFPNAKV   89 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHH---------------------HHHHCTTCEE
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcC--CCCceEEEEECCHHHHHHHHHH---------------------HHhhCCCCeE
Confidence            468889985 899999999999987  5   999999998877666542                     1111112333


Q ss_pred             EEEccC---hhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          203 CLHAMP---VQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       203 VIlaVp---~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .++..-   ...++.+++++...+.+=.++|+..
T Consensus        90 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  123 (287)
T 3rku_A           90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA  123 (287)
T ss_dssp             EEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            333322   3567778887766555445666654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.02  E-value=0.35  Score=44.97  Aligned_cols=42  Identities=14%  Similarity=0.201  Sum_probs=34.4

Q ss_pred             CCeEEEEccc---HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGaG---amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+.+.|-|++   -+|.++|..|++.|  .+|.+.+|+++..+++.+
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~G--a~Vvi~~r~~~~~~~~~~   50 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLG--AKLVFTYRKERSRKELEK   50 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            4567788874   59999999999999  899999999876665544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.01  E-value=0.077  Score=53.50  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC--eEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~--~V~l~~r~~  162 (420)
                      +++|+|||+|..|.+.|..|+++|  +  +|+++..++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~   37 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSE   37 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSS
T ss_pred             CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCC
Confidence            479999999999999999999998  8  999998753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=92.99  E-value=0.42  Score=44.15  Aligned_cols=42  Identities=17%  Similarity=0.379  Sum_probs=35.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDG--YRVVLIARSKQNLEKVHD   49 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888895 899999999999999  899999999887666554

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=92.97  E-value=0.079  Score=52.89  Aligned_cols=34  Identities=29%  Similarity=0.603  Sum_probs=30.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~  162 (420)
                      ...|.|||+|..|.+.|..|+++|  + +|+++++.+
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~   40 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYP   40 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence            357999999999999999999998  8 999998764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=92.93  E-value=0.9  Score=41.88  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.|+ |.+|.+++..|++.|  ++|.+.+|+++..+.+.+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNG--ARLLLFSRNREKLEAAAS   49 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888885 899999999999998  899999999876655443

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=92.92  E-value=0.13  Score=54.65  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus        17 ~s~VlVVGaGGLGsevak~La~aGV-G~ItlvD~D~   51 (640)
T 1y8q_B           17 GGRVLVVGAGGIGCELLKNLVLTGF-SHIDLIDLDT   51 (640)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEECCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            4699999999999999999999995 4899998763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.91  E-value=0.46  Score=46.59  Aligned_cols=93  Identities=10%  Similarity=0.057  Sum_probs=57.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~a  200 (420)
                      ..+|.|+|+|.+|...+..+...|  . .|+..++++++.+.+++.|......    ...   ...+..+.+     ...
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~----~~~---~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKEVGATECVN----PQD---YKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEEC----GGG---CSSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCceEec----ccc---cchhHHHHHHHHhCCCC
Confidence            368999999999999888887777  6 7999999988887777655321000    000   001222222     258


Q ss_pred             cEEEEccCh-hhHHHHHHHhhhcCCCC-CeEEEe
Q 014700          201 DYCLHAMPV-QFSSSFLEGISDYVDPG-LPFISL  232 (420)
Q Consensus       201 DiVIlaVp~-~~l~~vl~~i~~~l~~~-~iVVs~  232 (420)
                      |+||-++.. ..+...++    .++++ -.++.+
T Consensus       263 D~vid~~g~~~~~~~~~~----~l~~~~G~iv~~  292 (374)
T 2jhf_A          263 DFSFEVIGRLDTMVTALS----CCQEAYGVSVIV  292 (374)
T ss_dssp             SEEEECSCCHHHHHHHHH----HBCTTTCEEEEC
T ss_pred             cEEEECCCCHHHHHHHHH----HhhcCCcEEEEe
Confidence            999999985 34444443    34444 444443

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=92.89  E-value=0.29  Score=51.07  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.++..|+.+|. .+++++|.+.
T Consensus        32 ~~~VlvvG~GGlGseiak~La~aGV-g~itlvD~D~   66 (531)
T 1tt5_A           32 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGNQ   66 (531)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECCCB
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            4699999999999999999999995 5899999764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.88  E-value=0.35  Score=47.56  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=55.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-------
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-------  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-------  198 (420)
                      ..+|.|+|+|.+|.+.+..+...|  . .|++.++++++.+.+++.|........         ..+..+.+.       
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~---------~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAG--ATTVILSTRQATKRRLAEEVGATATVDPS---------AGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHTCSEEECTT---------SSCHHHHHHSTTSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHcCCCEEECCC---------CcCHHHHHHhhhhccC
Confidence            468999999999998888877777  6 898999999888877776642110000         013322222       


Q ss_pred             -CCcEEEEccCh-hhHHHHHHHhh
Q 014700          199 -GADYCLHAMPV-QFSSSFLEGIS  220 (420)
Q Consensus       199 -~aDiVIlaVp~-~~l~~vl~~i~  220 (420)
                       ++|+||-++.. ..+...++.+.
T Consensus       252 gg~Dvvid~~G~~~~~~~~~~~l~  275 (370)
T 4ej6_A          252 GGVDVVIECAGVAETVKQSTRLAK  275 (370)
T ss_dssp             TCEEEEEECSCCHHHHHHHHHHEE
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhc
Confidence             58999999984 34555554443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.84  E-value=0.26  Score=46.28  Aligned_cols=42  Identities=21%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |-+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   68 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAG--ARILINGTDPSRVAQTVQ   68 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888885 899999999999999  899999999887665543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.83  E-value=0.49  Score=43.46  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=35.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEG--AAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467889985 899999999999998  899999999877665543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.83  E-value=0.28  Score=47.20  Aligned_cols=91  Identities=10%  Similarity=0.024  Sum_probs=59.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh----c--cC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----L--LG  199 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea----l--~~  199 (420)
                      ..+|.|+| +|.+|.+.+..+...|  .+|++.++++++.+.+++.|.......    .     ..+..+.    .  ..
T Consensus       141 g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~Ga~~~~~~----~-----~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          141 GEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKALGAWETIDY----S-----HEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEET----T-----TSCHHHHHHHHTTTCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCCEEEeC----C-----CccHHHHHHHHhCCCC
Confidence            46899999 7999999999998888  799999999988888777653211000    0     0122221    1  25


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+||-++....+...++.    ++++..++.+
T Consensus       210 ~Dvvid~~g~~~~~~~~~~----l~~~G~iv~~  238 (325)
T 3jyn_A          210 CPVVYDGVGQDTWLTSLDS----VAPRGLVVSF  238 (325)
T ss_dssp             EEEEEESSCGGGHHHHHTT----EEEEEEEEEC
T ss_pred             ceEEEECCChHHHHHHHHH----hcCCCEEEEE
Confidence            8999999987655554443    3344444444

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.81  E-value=0.067  Score=50.81  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      +.+++|.|||+|..|.+.|..|++.|  ++|+++++.
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~   54 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGM   54 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecC
Confidence            34579999999999999999999998  899999984

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.77  E-value=0.49  Score=46.35  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=58.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~a  200 (420)
                      ..+|.|+|+|.+|...+..+...|  . +|+..++++++.+.+++.|....+.    ...   ...+..+.+     ..+
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~----~~~---~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFGATECIN----PQD---FSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHTCSEEEC----GGG---CSSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHcCCceEec----ccc---ccccHHHHHHHHhCCCC
Confidence            358999999999999888887777  6 7999999988887777665421100    000   001222222     258


Q ss_pred             cEEEEccChh-hHHHHHHHhhhcCCCC-CeEEEe
Q 014700          201 DYCLHAMPVQ-FSSSFLEGISDYVDPG-LPFISL  232 (420)
Q Consensus       201 DiVIlaVp~~-~l~~vl~~i~~~l~~~-~iVVs~  232 (420)
                      |+||-++... .+...+    ..++++ ..++.+
T Consensus       262 D~vid~~g~~~~~~~~~----~~l~~~~G~iv~~  291 (373)
T 2fzw_A          262 DYSFECIGNVKVMRAAL----EACHKGWGVSVVV  291 (373)
T ss_dssp             SEEEECSCCHHHHHHHH----HTBCTTTCEEEEC
T ss_pred             CEEEECCCcHHHHHHHH----HhhccCCcEEEEE
Confidence            9999999853 344333    444555 445443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=92.77  E-value=0.15  Score=49.31  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..+++.||| ...+|.++|..|.+.+  ..|+++....                            .|+++..+.||+||
T Consensus       178 ~Gk~vvViGRS~iVGkPla~LL~~~~--ATVTi~Hs~T----------------------------~dl~~~~~~ADIvV  227 (303)
T 4b4u_A          178 AGKHAVVVGRSAILGKPMAMMLLQAN--ATVTICHSRT----------------------------QNLPELVKQADIIV  227 (303)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHHTCSEEE
T ss_pred             CCCEEEEEeccccccchHHHHHHhcC--CEEEEecCCC----------------------------CCHHHHhhcCCeEE
Confidence            468999999 5778999999999987  8999875321                            26777788999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .++....+   +  -.++++++++||++
T Consensus       228 ~A~G~p~~---i--~~d~vk~GavVIDV  250 (303)
T 4b4u_A          228 GAVGKAEL---I--QKDWIKQGAVVVDA  250 (303)
T ss_dssp             ECSCSTTC---B--CGGGSCTTCEEEEC
T ss_pred             eccCCCCc---c--ccccccCCCEEEEe
Confidence            99875432   1  14678899999987

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=92.76  E-value=0.59  Score=43.78  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=34.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      .++|.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   63 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTL   63 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            357888884 899999999999998  89999999987665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	8e-39
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	1e-26
d1n1ea1	160	a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro	7e-26
d1txga1	155	a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro	4e-20
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	2e-17
d1vjta1	193	c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07	6e-17
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	1e-11
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	4e-07
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	0.003

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score =  136 bits (342), Expect = 8e-39
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
           NK VV G G+FGTA+A  ++ K  +  V +   +    + +NEK  N  +    +L  N+
Sbjct: 8   NKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRENVLFLKGVQLASNI 65

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLPFISLSKGLELNTLR 242
             T+D + A  GA+  L  +P QF   F E     +     +  +P +  +KG+E +TL+
Sbjct: 66  TFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK 125

Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLAS--KH 300
             ++II + L +P      L+GPSFA+E+   + T + +AS D  +A  +Q+++++  + 
Sbjct: 126 FPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS 183

Query: 301 LRISTS 306
                +
Sbjct: 184 FVCWAT 189

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  103 bits (256), Expect = 1e-26
 Identities = 27/180 (15%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
            V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R   +      + 
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT-LRMMSQI 247
                +  L  A+  L  +        +  I  Y+      +     ++ +  +  + + 
Sbjct: 61  WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEA 120

Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
           + +   + R+  +A++GP+ A E+  ++PT +V +S     AN ++++  +++  +  ++
Sbjct: 121 VWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score =  100 bits (250), Expect = 7e-26
 Identities = 44/101 (43%), Positives = 63/101 (62%)

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G  EIR L   +G   + + GL
Sbjct: 2   DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGL 61

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVL 408
           +G GD+ LTC   LSRN TVG +LG G  +++I  +   V 
Sbjct: 62  AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVA 102

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 84.3 bits (208), Expect = 4e-20
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNN-----SMAALVAQGCSEIRWLATKMGAKPA 362
           D+ G EI  ALKNV +IA   + G     N     +   +  +  +E+  L   +G    
Sbjct: 1   DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE 60

Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
           T  GLSG GD++ T      RN  +G  LG G  +D+ +  + +
Sbjct: 61  TAFGLSGFGDLIATFRGG--RNGMLGELLGKGLSIDEAMEELER 102

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 77.6 bits (190), Expect = 2e-17
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 17/184 (9%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPE 185
           +    VLG G+ G A AA++A K     V     D    + I ++               
Sbjct: 1   SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAH 58

Query: 186 NVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS 245
             + T+D   A+  AD  L  +P    +S    I+ Y+  G   I L+ G     L    
Sbjct: 59  PDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFRK 117

Query: 246 QIIPQALRNPRQPFIALSGPSFALELM-----------NKLPTAMVVASKDRKLANAVQQ 294
            +       P       S   F                  +  A + A+K       +  
Sbjct: 118 ILR--ENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGS 175

Query: 295 LLAS 298
           +L  
Sbjct: 176 VLPQ 179

>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.8 bits (188), Expect = 6e-17
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 21/200 (10%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC-QSINEKHCN------CRYFPEQ 181
           K+ ++G GS   A+       ++     +   D  +    ++E+  N       +Y  E 
Sbjct: 4   KISIIGAGSVRFALQLVGDIAQT---EELSREDTHIYMMDVHERRLNASYILARKYVEEL 60

Query: 182 KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL 241
             P  ++ T+    A+ GAD+ ++            G   + +     +    G      
Sbjct: 61  NSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEV--TKVGEKHGYYRGID 118

Query: 242 RMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHL 301
                ++                   A ++    P A ++ +     AN V ++  ++ +
Sbjct: 119 SQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQT-----ANPVFEI--TQAV 171

Query: 302 RISTSSDVTGV--EIAGALK 319
           R  T +++ G    +AG  +
Sbjct: 172 RRWTGANIVGFCHGVAGVYE 191

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 9/212 (4%)

Query: 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
           +V +LGG G+ G  +A  +A      ++ +  R     ++   ++            +N 
Sbjct: 2   RVALLGGTGNLGKGLALRLA--TLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNE 59

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
               +A    +      HA+        +      V P +P    +KG   ++ R  ++I
Sbjct: 60  D-AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEI 118

Query: 248 IPQAL--RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
           + + L           +    FA           V    D      +  +     LR   
Sbjct: 119 VAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRP-- 176

Query: 306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN 337
             D   +  +  ++++  +   I+    +G  
Sbjct: 177 -LDAGPLSNSRLVESLTPLILNIMRFNGMGEL 207

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG G+ G      +   K   +V   +R P    S+N    +   F E        
Sbjct: 2   KITVLGCGALGQLWLTALC--KQGHEVQGWLRVPQPYCSVNLVETDGSIFNE-------S 52

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
            T +    L  +D  L  +     S  ++ ++  +    P + +  G+ 
Sbjct: 53  LTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMG 101

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 129 KVVVLGGGSFGTAMA-AHVANKKSQLKVYMLM---RDPAVCQSINEKHCNCRYFPEQKLP 184
           K+  +GGGS  T      +  +  +L V  L          +         R   +  +P
Sbjct: 3   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 62

Query: 185 ENVIATTDAKTALLGADYCLHAMPV 209
             +  T D + AL GAD+      V
Sbjct: 63  IEIHLTLDRRRALDGADFVTTQFRV 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.97
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.94
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	99.92
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	99.89
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.79
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.78
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.75
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.71
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.67
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.65
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.63
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.59
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.59
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.58
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.56
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.51
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.5
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.48
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.39
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.3
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	99.1
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.86
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.85
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.85
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.78
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.76
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.72
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.67
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.61
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.61
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.6
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.59
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.59
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.59
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.55
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.52
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.52
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.5
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.47
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.45
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.45
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.45
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.37
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.33
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.32
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.31
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.31
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.27
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.22
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.21
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.2
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.19
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.17
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.08
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.03
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.02
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.92
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.9
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.88
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.85
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.75
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.74
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.65
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.61
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.57
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.55
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.52
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.5
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.49
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.43
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.42
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.3
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.28
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.2
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.17
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.13
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	97.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.11
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.1
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.08
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.07
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.05
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.03
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.03
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.97
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.89
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.87
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.85
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.83
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.81
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.78
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.72
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.72
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.58
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.39
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.33
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.32
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.16
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.16
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.14
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.11
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.05
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.01
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.01
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.93
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.9
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.81
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.77
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.77
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.76
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.73
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.71
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.71
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.71
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.66
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.56
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.53
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.51
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.42
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.39
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.37
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.34
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.34
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.3
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.28
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.26
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.22
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.22
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.21
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.2
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.19
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.16
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.16
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.16
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.16
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.12
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.0
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.99
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.99
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.98
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.95
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.94
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.85
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.78
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.73
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.66
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.59
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.57
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.55
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.42
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.4
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.37
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.29
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.23
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.19
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.08
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.05
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.03
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.01
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.0
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.84
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.73
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.73
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.71
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.69
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.56
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.55
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.53
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.48
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.41
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.4
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.32
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.32
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.28
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.25
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.24
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.22
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.03
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.85
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.81
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.7
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.62
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.61
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.56
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.54
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.49
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.42
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.4
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.34
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.26
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.21
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.17
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.04
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.99
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.98
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.88
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.87
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.81
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.76
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.55
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.49
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.46
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.4
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.2
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.08
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.06
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.99
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.98
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.83
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.66
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	90.57
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.53
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.46
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.34
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.3
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.06
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.81
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.78
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.71
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.69
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.64
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.59
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	89.56
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.5
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.3
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.13
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.13
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.11
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.89
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.68
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.54
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.53
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.47
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.47
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.42
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.3
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.21
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.12
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.03
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.97
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.93
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	87.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.67
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.62
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	87.59
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.46
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.45
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	87.44
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.44
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.32
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.26
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.13
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.9
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	86.76
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.49
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.43
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.27
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	86.12
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.03
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.91
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.74
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.64
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.59
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.59
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	85.13
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.13
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.05
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.7
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.62
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.14
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	83.96
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	83.89
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	83.77
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.77
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	83.75
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.54
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.47
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.35
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	83.29
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.18
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	82.92
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.83
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.73
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	82.22
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	81.84
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	81.84
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.78
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.76
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	81.52
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.51
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	81.38
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.22
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	81.16
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.15
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	81.09
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	81.07
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	80.74
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	80.29
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	80.13

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.97  E-value=2.9e-31  Score=241.93  Aligned_cols=179  Identities=30%  Similarity=0.453  Sum_probs=164.2

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++.|+||+|||+|+||+++|..|+++|  |+|++|+|+++.++.|++.+.+.+|+|++.+++++.+++|++++++++|+|
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCE
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEE
Confidence            556779999999999999999999998  999999999999999999999999999999999999999999999999999


Q ss_pred             EEccChhhHHHHHHHhhhc-----CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeE
Q 014700          204 LHAMPVQFSSSFLEGISDY-----VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~-----l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~  278 (420)
                      |+|||++.++++++++.++     ++++.++++++||++.++...+++++.+.++.  ..+++++||+++.|++++.|+.
T Consensus        82 iiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt~  159 (189)
T d1n1ea2          82 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTC  159 (189)
T ss_dssp             EECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEE
T ss_pred             EEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCcE
Confidence            9999999999999998764     35678899999999998888999999988765  4678999999999999999999


Q ss_pred             EEEecCCHHHHHHHHHHHhc--CCceEEEc
Q 014700          279 MVVASKDRKLANAVQQLLAS--KHLRISTS  306 (420)
Q Consensus       279 i~ia~~d~e~~~~l~~ll~~--~g~~v~~s  306 (420)
                      +++++.+.+..++++++|++  ..|++|.+
T Consensus       160 ~viAs~~~~~a~~i~~lfst~~~~frvy~S  189 (189)
T d1n1ea2         160 VSIASADINVARRLQRIMSTGDRSFVCWAT  189 (189)
T ss_dssp             EEEECSSHHHHHHHHHHHSCTTSSEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHhCCCCCCEEEecC
Confidence            99999999999999999986  45888753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=3.3e-26  Score=206.48  Aligned_cols=176  Identities=18%  Similarity=0.277  Sum_probs=147.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r--~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|+||+++|..|+++|  ++|++|.|  +++.++.+++.+.+..+ +....+..+.+++|++++++++|+||+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL-GVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEecccHHHHHHHhhhhhhhhh-cchhccccccccccHHHHHhccchhhc
Confidence            89999999999999999999998  99999998  45678888887765543 222234467778899999999999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t--~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      |||++.++++++++.+++++ ..++.+++|+....  ...+.+.+.+..+.....+++++||+++.|++.+.|+.+++++
T Consensus        78 avps~~~~~~~~~l~~~l~~-~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias  156 (180)
T d1txga2          78 GVSTDGVLPVMSRILPYLKD-QYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS  156 (180)
T ss_dssp             CSCGGGHHHHHHHHTTTCCS-CEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             ccchhhhHHHHHhhcccccc-ceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEc
Confidence            99999999999999999865 56677888886432  2357788877665433467899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhcCCceEEEcC
Q 014700          284 KDRKLANAVQQLLASKHLRISTSS  307 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~s~  307 (420)
                      .+.+.+++++++|++.+|++|.++
T Consensus       157 ~~~~~a~~i~~~f~~~~frvy~St  180 (180)
T d1txga2         157 PSESSANKMKEIFETEYFGVEVTT  180 (180)
T ss_dssp             SCHHHHHHHHHHHCBTTEEEEEES
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeCC
Confidence            999999999999999999998763

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.92  E-value=6.7e-26  Score=200.82  Aligned_cols=114  Identities=40%  Similarity=0.625  Sum_probs=111.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCCCCcc
Q 014700          307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT  386 (420)
Q Consensus       307 ~Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~sRn~~  386 (420)
                      +|+.|+|+++++||++|+++|+++++++++|+++++++++++||.++++++|.+++|+++++|+||+++||++..||||+
T Consensus         1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~   80 (160)
T d1n1ea1           1 TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFT   80 (160)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCChHHHHHHcCCcccccchhhhhhcC
Q 014700          387 VGVRLGSGEKLDDILSSMNQVLVNPSMQPLLGKL  420 (420)
Q Consensus       387 ~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~~  420 (420)
                      +|+.+++|++++|+.+++++++||+.|++.+++|
T Consensus        81 ~G~~l~~g~~~~e~~~~~~~~vEG~~t~~~v~~l  114 (160)
T d1n1ea1          81 VGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRL  114 (160)
T ss_dssp             HHHHHHHTCCHHHHHHSCCSCCHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHhccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999864

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=1.4e-24  Score=191.22  Aligned_cols=111  Identities=30%  Similarity=0.420  Sum_probs=105.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHHHcCCChhhhhhccccchhhhhhcccCC
Q 014700          308 DVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLS  382 (420)
Q Consensus       308 Di~g~e~~~alkNv~Ai~~G~~~gl~lg-----~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~g~gdl~~t~~~~~s  382 (420)
                      |+.|+|+++++||++|+++|++++++++     .|+.+++++++++||.++++++|.+++|++++||+||+++||.+  |
T Consensus         1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--s   78 (155)
T d1txga1           1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--G   78 (155)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--H
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--C
Confidence            7899999999999999999999999876     59999999999999999999999999999999999999999986  9


Q ss_pred             CCccccccccCCCChHHHHHHcC----CcccccchhhhhhcC
Q 014700          383 RNRTVGVRLGSGEKLDDILSSMN----QVLVNPSMQPLLGKL  420 (420)
Q Consensus       383 Rn~~~G~~l~~g~~~~~~~~~~~----~~~eG~~t~~~~~~~  420 (420)
                      ||+++|+.|++|++++|++++++    +++||+.|++.+++|
T Consensus        79 RN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l  120 (155)
T d1txga1          79 RNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRL  120 (155)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            99999999999999999998864    599999999999874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=5.8e-19  Score=155.40  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||||||+|.||.+||.+|+++|  |+|++|||+++.++.+.+.+              .....+++|+++++|+||+||
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAG--------------AETASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCcchhHHHHHhh--------------hhhcccHHHHHhCCCeEEEEc
Confidence            79999999999999999999999  99999999999999888754              345668899999999999999


Q ss_pred             C-hhhHHHHH---HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          208 P-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       208 p-~~~l~~vl---~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      | ..++++++   +.+.+.++++++||++++ ..+++...+.+.+.+.      .+.++.+|..............++.+
T Consensus        65 ~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~------g~~~vdapv~gg~~~a~~g~l~~~~g  137 (161)
T d1vpda2          65 PNSPHVKEVALGENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAK------GVEMLDAPVSGGEPKAIDGTLSVMVG  137 (161)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTT------TCEEEECCEESHHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHhCCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHc------CCceecccccCChhHHhcCCeEEEEc
Confidence            8 56688887   457788889999999986 5665544444444432      34566666554432211123344556


Q ss_pred             CCHHHHHHHHHHHhcCCceEEE
Q 014700          284 KDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      ++++.+++++++|+..+.++++
T Consensus       138 G~~~~~~~~~~il~~~~~~i~~  159 (161)
T d1vpda2         138 GDKAIFDKYYDLMKAMAGSVVH  159 (161)
T ss_dssp             SCHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCceEE
Confidence            6889999999999998877664

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.78  E-value=4.3e-19  Score=156.36  Aligned_cols=157  Identities=17%  Similarity=0.174  Sum_probs=113.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||++||..|.++|  |+|++|||+++.++++++.+..            -...++. ++++++|+||+||
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~~------------~~~~~~~-~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDL-SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCG-GGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhcc------------ceeeeec-ccccccccccccC
Confidence            79999999999999999999998  9999999999988888876531            0233444 5689999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEEC-----cccHH-HHhhcCCeEEEE
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG-----PSFAL-ELMNKLPTAMVV  281 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~G-----P~~a~-ev~~g~~t~i~i  281 (420)
                      |...++++++++.+.++++++|+++++ ......    ..+.+.... ......+.|     |..+. ++..+.+..++.
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~~s-~~~~~~----~~~~~~~~~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~  139 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDVAS-VKTAIA----EPASQLWSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP  139 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECCS-CCHHHH----HHHHHHSTT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred             cHhhhhhhhhhhhhhcccccceeeccc-cchHHH----HHHHHhhcc-cccceeeecccccchhhhcccccCCCeEEEEe
Confidence            999999999999999999999988764 332221    222232221 111223333     33332 233444443332


Q ss_pred             -ecCCHHHHHHHHHHHhcCCceEEE
Q 014700          282 -ASKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       282 -a~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                       .+.+++..+.++++|+..|.+++.
T Consensus       140 ~~~~~~~~~~~v~~l~~~lG~~v~~  164 (165)
T d2f1ka2         140 TEYTDPEQLACLRSVLEPLGVKIYL  164 (165)
T ss_dssp             CTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEe
Confidence             356789999999999999999875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=1.4e-17  Score=146.70  Aligned_cols=156  Identities=13%  Similarity=0.167  Sum_probs=115.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |+||+|||+|.||.+||.+|.++|  |+|.+|||+++..+.+...+              .....++.|++..+|+|++|
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAG--------------ASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEECSSHHHHHTSCSEEEEC
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECchhhhhhhhhhh--------------ccccchhhhhccccCeeeec
Confidence            679999999999999999999998  99999999999988887754              24455788999999999999


Q ss_pred             cChh-hHHHHHHH---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe
Q 014700          207 MPVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (420)
Q Consensus       207 Vp~~-~l~~vl~~---i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia  282 (420)
                      ||.. ..++++..   +.+.+.++++||.+++ +.+++...+.+.+.+. |..+..+.+.+||..+.   .|.  ..++.
T Consensus        65 v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st-~~p~~~~~~~~~~~~~-gi~~~dapv~Gg~~~a~---~G~--l~~~~  137 (162)
T d3cuma2          65 LPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARER-GLAMLDAPVSGGTAGAA---AGT--LTFMV  137 (162)
T ss_dssp             CSCHHHHHHHHHSTTCHHHHSCTTCEEEECSC-CCHHHHHHHHHHHHHT-TCEEEECCEESCHHHHH---HTC--EEEEE
T ss_pred             ccchhhHHHHHhccccccccCCCCCEEEECCC-CCHHHHHHHHHHHHHC-CCcEEecccccCccccc---cCC--eEEEe
Confidence            9964 56777654   5677889999999886 6666555566666553 32112222334443332   243  34455


Q ss_pred             cCCHHHHHHHHHHHhcCCceEEE
Q 014700          283 SKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       283 ~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      +++++.+++++++|+..+.++++
T Consensus       138 gG~~~~~~~~~~il~~~~~~v~~  160 (162)
T d3cuma2         138 GGDAEALEKARPLFEAMGRNIFH  160 (162)
T ss_dssp             ESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCccEE
Confidence            67888999999999988777654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=4.1e-17  Score=142.31  Aligned_cols=149  Identities=15%  Similarity=0.204  Sum_probs=111.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|+||++|+..|.++|  ++|++|+|+.++.+++.+..             ++.++.+.+++++++|+||+||
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~~~~~~~l~~~~-------------g~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQL-------------ALPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHH-------------TCCBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcChHHhHHhhcccc-------------ceeeechhhhhhhccceeeeec
Confidence            79999999999999999999988  99999999999888886642             1344568889999999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec-CCH
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDR  286 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~-~d~  286 (420)
                      |++.++++++.    ++++++||++..|+..+       .+.+.++.. .. .+...|+.+..+..+. +.+.... .++
T Consensus        66 kp~~~~~vl~~----l~~~~~iis~~agi~~~-------~l~~~l~~~-~~-ivr~mPN~~~~v~~g~-~~~~~~~~~~~  131 (152)
T d2ahra2          66 KPQLFETVLKP----LHFKQPIISMAAGISLQ-------RLATFVGQD-LP-LLRIMPNMNAQILQSS-TALTGNALVSQ  131 (152)
T ss_dssp             CGGGHHHHHTT----SCCCSCEEECCTTCCHH-------HHHHHHCTT-SC-EEEEECCGGGGGTCEE-EEEEECTTCCH
T ss_pred             chHhHHHHhhh----cccceeEecccccccHH-------HHHhhhccc-cc-chhhccchhhhcCccc-eEEEeCCCCCH
Confidence            99988887755    45788999999998754       244555532 12 3455688766554332 2222222 268


Q ss_pred             HHHHHHHHHHhcCCceEEE
Q 014700          287 KLANAVQQLLASKHLRIST  305 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~~  305 (420)
                      +..+.++++|+..|..+++
T Consensus       132 ~~~~~v~~l~~~~G~~~~v  150 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTFDI  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEe
Confidence            8899999999998865543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.71  E-value=4.9e-17  Score=141.53  Aligned_cols=149  Identities=17%  Similarity=0.217  Sum_probs=112.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|+||.+|+..|.++| .++|.+|+|++++.+.+.+.+             ++.+.++.++ +.++|+||+||
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~~-------------~~~~~~~~~~-v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKEL-------------GVETSATLPE-LHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHHT-------------CCEEESSCCC-CCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhhc-------------cccccccccc-ccccceEEEec
Confidence            79999999999999999998887 489999999999999988753             2455666655 67899999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEe-cCCH
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKDR  286 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia-~~d~  286 (420)
                      |++.++++++++.+   .++++|++..|+..+       .+.+.++..  ...+...|+.+..+..|. +.+... ..++
T Consensus        66 kP~~~~~v~~~l~~---~~~~viS~~ag~~~~-------~l~~~l~~~--~~iir~mpn~p~~~~~g~-t~~~~~~~~~~  132 (152)
T d1yqga2          66 KPQDMEAACKNIRT---NGALVLSVAAGLSVG-------TLSRYLGGT--RRIVRVMPNTPGKIGLGV-SGMYAEAEVSE  132 (152)
T ss_dssp             CHHHHHHHHTTCCC---TTCEEEECCTTCCHH-------HHHHHTTSC--CCEEEEECCGGGGGTCEE-EEEECCTTSCH
T ss_pred             CHHHHHHhHHHHhh---cccEEeecccCCCHH-------HHHHHhCcC--cceEeecccchhHhcCCc-EEEEeCCCCCH
Confidence            99999999888754   478999999998753       356666542  224566777776654442 222222 2357


Q ss_pred             HHHHHHHHHHhcCCceEE
Q 014700          287 KLANAVQQLLASKHLRIS  304 (420)
Q Consensus       287 e~~~~l~~ll~~~g~~v~  304 (420)
                      +..+.++++|+..|..++
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            888999999999886544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.67  E-value=1.8e-16  Score=140.60  Aligned_cols=109  Identities=26%  Similarity=0.238  Sum_probs=92.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +||+|||+|+||+++|..|+++|  |+|++|+|++++++.+++.+....+.++... ......+++++|+++++|+||+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            79999999999999999999999  9999999999999999988765555555443 23445678899999999999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ||+..++++++++.++++++++|+ +++|....
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv-~~~g~~~~  111 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLII-LNPGATGG  111 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEE-ESSCCSSH
T ss_pred             EchhHHHHHHHHhhhccCCCCEEE-EeCCCCcc
Confidence            999999999999999999998776 45565543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=6.7e-18  Score=147.63  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|+||+++|..|+++|  |+|++|+|++++.+.++..+.+..     ... .....++ .+.+.++|+||++|
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-----~~~-~~~~~~~-~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETDGS-----IFN-ESLTAND-PDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTTSC-----EEE-EEEEESC-HHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHHhhhhccccCCcc-----ccc-cccccch-hhhhcccceEEEee
Confidence            89999999999999999999999  999999998864433222111111     111 1223334 45578999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      |+.+++++++.+.+++.++++|++++||+...
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            99999999999999999999999999999764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.63  E-value=7e-16  Score=137.29  Aligned_cols=161  Identities=9%  Similarity=0.056  Sum_probs=112.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ..+|+|||+|.||.+||.+|.++|  |+|++|||++++++.+.+.+......      .......++.+++..+|++|++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKGTKV------LGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTTSSC------EECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHhccccccc------cchhhhhhhhhhhcccceEEEe
Confidence            358999999999999999999999  99999999999999998865321100      0111223556678899999999


Q ss_pred             cCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCC
Q 014700          207 MPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (420)
Q Consensus       207 Vp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d  285 (420)
                      ++. ..+.++++++.+.+++++++|.+++ +.+++...+.+.+.+. +..+..+.+..||..+.   .|.  .+++ +++
T Consensus        74 ~~~~~~v~~v~~~l~~~~~~g~iiid~sT-~~~~~~~~~~~~~~~~-g~~~ldapvsGg~~~A~---~G~--~~~~-gG~  145 (176)
T d2pgda2          74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGN-SEYRDTMRRCRDLKDK-GILFVGSGVSGGEDGAR---YGP--SLMP-GGN  145 (176)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHT-TCEEEEEEEESHHHHHH---HCC--EEEE-EEC
T ss_pred             cCchHHHHHHHHHHHhccccCcEEEecCc-chhHHHHHHHHHHHhc-CCceeccccccCccccc---CCc--EEEc-CCC
Confidence            995 5688999999999999999999986 5555444555555443 32222222333333222   243  3444 456


Q ss_pred             HHHHHHHHHHHhcCCceE
Q 014700          286 RKLANAVQQLLASKHLRI  303 (420)
Q Consensus       286 ~e~~~~l~~ll~~~g~~v  303 (420)
                      ++.+++++++|+..+-++
T Consensus       146 ~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         146 KEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             TTTHHHHHHHHHHHSCBC
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            778899999999766553

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.59  E-value=1.5e-14  Score=127.09  Aligned_cols=162  Identities=13%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH-hccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e-al~~aDiVIl  205 (420)
                      |+||+|||+|.||+++|..|.++|...+|+.||++++..+..++.+...            ...++.++ ...++|+||+
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID------------EGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS------------EEESCGGGGGGTCCSEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch------------hhhhhhhhhhccccccccc
Confidence            4679999999999999999999985568999999999888888765311            22334333 3457999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEE-----CcccHH-HHhhcCCeEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS-----GPSFAL-ELMNKLPTAM  279 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~-----GP~~a~-ev~~g~~t~i  279 (420)
                      |+|...+.++++++.++++++++|+++...-. ..    .+.+.+.++........+.     ||..+. .++.+.+..+
T Consensus        69 a~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~-~~----~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il  143 (171)
T d2g5ca2          69 SSPVRTFREIAKKLSYILSEDATVTDQGSVKG-KL----VYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVIL  143 (171)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEECCSCCT-HH----HHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEE
T ss_pred             cCCchhhhhhhhhhhccccccccccccccccH-HH----HHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEE
Confidence            99999999999999999999999988764322 11    2223333322111122333     343332 2345554433


Q ss_pred             EEe-cCCHHHHHHHHHHHhcCCceEEE
Q 014700          280 VVA-SKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       280 ~ia-~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      +.. ..+.+..+.++++|+..|.++..
T Consensus       144 ~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         144 TPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            322 34788899999999999988753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=4.6e-15  Score=131.82  Aligned_cols=160  Identities=14%  Similarity=0.139  Sum_probs=111.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hccCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al~~aDiVI  204 (420)
                      |||||||+|.||.+||.+|.++|  |+|.+|||++++.+.+.+.+......      .+.....+.++   .+..++.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASAPFA------GNLKAFETMEAFAASLKKPRKAL   73 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTSTTG------GGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCccccc------cchhhhhhhhHHHHhcccceEEE
Confidence            79999999999999999999999  99999999999999998876543221      22333334333   345777787


Q ss_pred             EccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          205 HAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       205 laVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      ++++. ..+..++..+...+.++++++.+++ ..++....+.+.+.+.      .+.++..|...........+.+ +.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~------~~~~ldapv~g~~~~a~~g~~~-mvg  145 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAA------GLRFLGMGISGGEEGARKGPAF-FPG  145 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTT------TCEEEEEEEESHHHHHHHCCEE-EEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhc------ceeEecccccCCcchhcCCcEE-Eee
Confidence            77774 6688888999999999999999886 4444333344443322      3445555555443221112334 445


Q ss_pred             CCHHHHHHHHHHHhcCCceE
Q 014700          284 KDRKLANAVQQLLASKHLRI  303 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v  303 (420)
                      ++++.+++++++|+..+.++
T Consensus       146 G~~~~~~~v~pil~~~~~~~  165 (178)
T d1pgja2         146 GTLSVWEEIRPIVEAAAAKA  165 (178)
T ss_dssp             ECHHHHHHHHHHHHHHSCBC
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            68899999999999876554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.58  E-value=2.7e-14  Score=129.64  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=122.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCC-------CCCCceEEeCCHHHhccCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ-------KLPENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~-------~l~~~i~a~td~~eal~~a  200 (420)
                      |||+|||+|.+|.++|..|+++|  |+|++||.++++++.+++.. .+.+.++.       ....++..++|.+++++++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~~i~~ln~g~-~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHHHHHHhcccC-CcccchhhhhhhhhhhcccccccCCCHHHHHhhC
Confidence            89999999999999999999999  99999999999999998743 22222222       1245678899999999999


Q ss_pred             cEEEEccChh----------hHHHHHHHhhh---cCCCCCeEEEeccCCCcchhh-hHHHHHHHHhCCC-CCCeEEEECc
Q 014700          201 DYCLHAMPVQ----------FSSSFLEGISD---YVDPGLPFISLSKGLELNTLR-MMSQIIPQALRNP-RQPFIALSGP  265 (420)
Q Consensus       201 DiVIlaVp~~----------~l~~vl~~i~~---~l~~~~iVVs~snGi~~~t~~-~~se~l~~~lg~~-~~~~~vl~GP  265 (420)
                      |++|+|||..          .+..+++.+..   ...++++||..+. +.+.+.+ ....++.+..+.. ...+.+.+.|
T Consensus        78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST-v~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P  156 (202)
T d1mv8a2          78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST-VLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (202)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC-CCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc-cCCcchhhhhhhhhhccccccccccccchhhh
Confidence            9999999852          35556655544   3446777776664 6665433 3344455544321 2356788888


Q ss_pred             ccHHHH--h--hcCCeEEEEecCCHHHHHHHHHHHhcCCceE
Q 014700          266 SFALEL--M--NKLPTAMVVASKDRKLANAVQQLLASKHLRI  303 (420)
Q Consensus       266 ~~a~ev--~--~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v  303 (420)
                      .+..+.  .  -..+..+++++.+++..+.++++++.....+
T Consensus       157 E~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~i  198 (202)
T d1mv8a2         157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPI  198 (202)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCE
T ss_pred             hhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Confidence            887541  1  1234456788889999999999998865544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.56  E-value=6.8e-15  Score=127.64  Aligned_cols=148  Identities=9%  Similarity=0.117  Sum_probs=98.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.||++||..|.++|  |+|++|++++.........+..              +..+++|+++++|+||+||
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVG--------------VTETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHT--------------CEECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCchhHHHHHhhhccc--------------ccccHHHHHhhcCeEEEEe
Confidence            79999999999999999999998  9999999887665555544421              2236788899999999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHH
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e  287 (420)
                      |.....+++.++.+.+  ++++|.+++ +.+++.+    .+.+.+...    .++.+|........+..+.+++++.+.+
T Consensus        65 ~~~~~~~~~~~~~~~~--~~~~id~st-~~p~~~~----~l~~~~~~~----~~~d~~v~g~~~~~~~~~~~~~~G~~~~  133 (152)
T d1i36a2          65 TPGVALGAARRAGRHV--RGIYVDINN-ISPETVR----MASSLIEKG----GFVDAAIMGSVRRKGADIRIIASGRDAE  133 (152)
T ss_dssp             CGGGHHHHHHHHHTTC--CSEEEECSC-CCHHHHH----HHHHHCSSS----EEEEEEECSCHHHHGGGCEEEEESTTHH
T ss_pred             cCchHHHHHHhhcccC--CceeeccCc-CCHHHHH----HHHHHHhcc----CCCcccccCCcccccCCcEEEEECCCHH
Confidence            9988888888887765  467887764 5554433    334443321    1333333222111122234556666655


Q ss_pred             HHHHHHHHHhcCCceEEEc
Q 014700          288 LANAVQQLLASKHLRISTS  306 (420)
Q Consensus       288 ~~~~l~~ll~~~g~~v~~s  306 (420)
                      .+++    |+..|..+.+.
T Consensus       134 ~~~~----l~~~g~~i~~~  148 (152)
T d1i36a2         134 EFMK----LNRYGLNIEVR  148 (152)
T ss_dssp             HHHG----GGGGTCEEEEC
T ss_pred             HHHH----HHHcCCeeeEc
Confidence            4443    66777777654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=6.7e-14  Score=121.81  Aligned_cols=151  Identities=17%  Similarity=0.187  Sum_probs=108.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp  208 (420)
                      ||+|||+|+||..||.+|.++|  +.| +|+|++++.+.+.+.+..              ..... +.+.++|++|+++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g--~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~i~~~~   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRF--PTL-VWNRTFEKALRHQEEFGS--------------EAVPL-ERVAEARVIFTCLP   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTS--CEE-EECSSTHHHHHHHHHHCC--------------EECCG-GGGGGCSEEEECCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCC--CEE-EEeCCHHHHHHHHHHcCC--------------ccccc-ccccceeEEEeccc
Confidence            8999999999999999999987  655 688888777666665421              12233 44678999999999


Q ss_pred             h-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHH
Q 014700          209 V-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (420)
Q Consensus       209 ~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e  287 (420)
                      . ..+..+...+.+.+.+++++|.++. ..+++.+.+.+.+.+.      .+.++..|...........+..++.+++++
T Consensus        64 ~~~~v~~~~~~l~~~~~~~~~iid~sT-~~p~~~~~~~~~~~~~------gi~~ldapVsGg~~~A~~G~L~~~vgG~~~  136 (156)
T d2cvza2          64 TTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREK------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEE  136 (156)
T ss_dssp             SHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCEEEEEESCHH
T ss_pred             chhhhhhhhcccccccccccccccccc-CCHHHHHHHHHHHHHc------CCeEEeccccCchhhhccCCEEEEEeCCHH
Confidence            5 5577788888888999999998885 6666545555555432      356777776655333223344567788999


Q ss_pred             HHHHHHHHHhcCCceEEE
Q 014700          288 LANAVQQLLASKHLRIST  305 (420)
Q Consensus       288 ~~~~l~~ll~~~g~~v~~  305 (420)
                      .+++++++|+ .+-++++
T Consensus       137 ~~~~~~p~L~-~~~~v~~  153 (156)
T d2cvza2         137 AVERVRPFLA-YAKKVVH  153 (156)
T ss_dssp             HHHHHGGGCT-TEEEEEE
T ss_pred             HHHHHHHHHH-hcCcCEE
Confidence            9999999984 5555554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.50  E-value=6e-14  Score=121.28  Aligned_cols=144  Identities=13%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             cCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..++||+||| +|.||.+||..|.++|  |+|++|||++..                           +.++.+.++|++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~~~---------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDWA---------------------------VAESILANADVV   57 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCGG---------------------------GHHHHHTTCSEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccccc---------------------------ccchhhhhcccc
Confidence            3478999999 8999999999999999  999999997532                           234456789999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEec
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~  283 (420)
                      ++++|...+.+++.++.+++++++++++++. +..+    ..+.+.+.++........+.||.....   .....++..+
T Consensus        58 ~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S-vk~~----~~~~~~~~~~~~~v~~hP~~Gp~~~~~---~g~~~v~~~g  129 (152)
T d2pv7a2          58 IVSVPINLTLETIERLKPYLTENMLLADLTS-VKRE----PLAKMLEVHTGAVLGLHPMFGADIASM---AKQVVVRCDG  129 (152)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTSEEEECCS-CCHH----HHHHHHHHCSSEEEEEEECSCTTCSCC---TTCEEEEEEE
T ss_pred             ccccchhhheeeeecccccccCCceEEEecc-cCHH----HHHHHHHHccCCEEEecccCCCccccc---CCcEEEEecC
Confidence            9999999999999999999999999998873 4432    234444444321112234556654321   1223333445


Q ss_pred             CCHHHHHHHHHHHhcCCceEEE
Q 014700          284 KDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       284 ~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      .+.+.++++.++|+..|.+++-
T Consensus       130 ~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         130 RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCEEEe
Confidence            6677889999999999998764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=3.2e-15  Score=129.39  Aligned_cols=148  Identities=9%  Similarity=0.014  Sum_probs=94.2

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~  209 (420)
                      |+|||+|+||.+|+..|.+.+  +.+.+|+|++++.+++.+.+..              ...+++++++.+|+||+|||+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~--~~~~v~~R~~~~~~~l~~~~~~--------------~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRY--EIGYILSRSIDRARNLAEVYGG--------------KAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC--------------CCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHHHhCC--CEEEEEeCChhhhcchhhcccc--------------cccchhhhhccCcEEEEeccc
Confidence            799999999999999997654  4556899999999999886521              112556778899999999999


Q ss_pred             hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHHH
Q 014700          210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA  289 (420)
Q Consensus       210 ~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~  289 (420)
                      +++.++++++.   .+++++|+++.+...+.       +.....   .....+..|...........+..+..++|++..
T Consensus        66 ~~i~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~  132 (153)
T d2i76a2          66 RYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGL  132 (153)
T ss_dssp             TTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTH
T ss_pred             hhhhHHHhhhc---ccceeeeecccchhhhh-------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHH
Confidence            99999988774   36889999998766432       111110   011122222221111111112222334567888


Q ss_pred             HHHHHHHhcCCceEEEc
Q 014700          290 NAVQQLLASKHLRISTS  306 (420)
Q Consensus       290 ~~l~~ll~~~g~~v~~s  306 (420)
                      +.++++|+..|.+++..
T Consensus       133 ~~~~~l~~~lG~~~~~i  149 (153)
T d2i76a2         133 PIVKKIAEEISGKYFVI  149 (153)
T ss_dssp             HHHHHHHHHHCSCEEEC
T ss_pred             HHHHHHHHHHCCcEEEe
Confidence            99999999988776654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.6e-11  Score=106.29  Aligned_cols=166  Identities=15%  Similarity=0.243  Sum_probs=113.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc-------CCCCCCCCC--------CCCCceEEeC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ--------KLPENVIATT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g-------~~~~~l~~~--------~l~~~i~a~t  191 (420)
                      ++||+|||+|.||..+|..++.+|  ++|++||++++.++...+.-       .........        ....++..++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            679999999999999999999999  99999999997655433210       000000000        0113577888


Q ss_pred             CHHHhccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECccc
Q 014700          192 DAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSF  267 (420)
Q Consensus       192 d~~eal~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~  267 (420)
                      |..+++.+||+||-|++.  ..-+++++++.+++++++++.+.+.++...       .+.+.+..+ ..+..+  .-|.+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~-------~la~~~~~p-~r~ig~HffnP~~  153 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT-------SIANATTRQ-DRFAGLHFFNPVP  153 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH-------HHHTTSSCG-GGEEEEEECSSTT
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc-------hhhhhccCH-hHEEeeccccccC
Confidence            999999999999999995  457889999999999999998888777653       233333332 122211  22332


Q ss_pred             HHHHhhcCCe-EEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          268 ALELMNKLPT-AMVVA-SKDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       268 a~ev~~g~~t-~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                      .      .+- -++.+ ..+++.++.+.++++..|...+...|
T Consensus       154 ~------~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         154 V------MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             T------CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             c------ccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            2      111 12222 24689999999999999998877666

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.22  E-value=3.9e-11  Score=107.24  Aligned_cols=167  Identities=13%  Similarity=0.159  Sum_probs=111.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CC-CCCCCCC--------CCCceEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NC-RYFPEQK--------LPENVIATTDAKT  195 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~-~~l~~~~--------l~~~i~a~td~~e  195 (420)
                      +++||+|||+|.||+.+|..++.+|  ++|++||++++.+++..+.-. .. +......        ...++..+++.++
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD   80 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc
Confidence            4679999999999999999999999  999999999886554332100 00 0000001        1234666677654


Q ss_pred             hccCCcEEEEccCh--hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEE--ECcccHHHH
Q 014700          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL--SGPSFALEL  271 (420)
Q Consensus       196 al~~aDiVIlaVp~--~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl--~GP~~a~ev  271 (420)
                       +.+||+||-|+|.  ...++++.+|.++.++++++.+.+.++..+       .+.+.+..+ ..+..+  .-|.+... 
T Consensus        81 -~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~-------~la~~~~~p-~r~~g~Hf~nP~~~~~-  150 (186)
T d1wdka3          81 -FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS-------LLAKALKRP-ENFVGMHFFNPVHMMP-  150 (186)
T ss_dssp             -GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHGGGCSCG-GGEEEEECCSSTTTCC-
T ss_pred             -ccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH-------HHHHhccCc-hheEeeccccCcccCC-
Confidence             7899999999995  457789999999999999999888877753       234444332 122222  22322211 


Q ss_pred             hhcCCeEEEEe-cCCHHHHHHHHHHHhcCCceEEEcCC
Q 014700          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSD  308 (420)
Q Consensus       272 ~~g~~t~i~ia-~~d~e~~~~l~~ll~~~g~~v~~s~D  308 (420)
                          ..-++.+ ..+++.++.+.++++..|.......|
T Consensus       151 ----lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  184 (186)
T d1wdka3         151 ----LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVND  184 (186)
T ss_dssp             ----EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ----eEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence                1112222 24688999999999999988777655

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.10  E-value=1.7e-10  Score=100.60  Aligned_cols=194  Identities=14%  Similarity=0.184  Sum_probs=107.3

Q ss_pred             CeEEEE-cccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVL-GGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~II-GaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      |||+|| |+|.||.++|..|+++|  |+|.+|+|++++++.+.+...+..+      . ......+........+....+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~e~~~~l~~~i~~~~~------~-~~~~~~~~~~~~~~~~~~~~~   71 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRRIAG------D-ASITGMKNEDAAEACDIAVLT   71 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHHHHS------S-CCEEEEEHHHHHHHCSEEEEC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC------C-ceEEeeccccccchhhhhhhh
Confidence            799999 78999999999999999  9999999999988877664321111      0 112222334445567788888


Q ss_pred             cChhhHHHHHHHhhhcCC------CCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEE---EECcccHHHHhhcCCe
Q 014700          207 MPVQFSSSFLEGISDYVD------PGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIA---LSGPSFALELMNKLPT  277 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~------~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~v---l~GP~~a~ev~~g~~t  277 (420)
                      +......+.+..+.....      ..........+..........+.....+...  ....   +.++....+.......
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  149 (212)
T d1jaya_          72 IPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE--KVVSALHTIPAARFANLDEKFDW  149 (212)
T ss_dssp             SCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS--CEEECCTTCCHHHHHCTTCCCCE
T ss_pred             eeeeccchHHHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhh--cccccceeecHHHhcCcccccCc
Confidence            886655554433322211      1111222222222222223344444444331  1111   1122222222223344


Q ss_pred             EEEEecCCHHHHHHHH-HHHhcCCceEEEcCChhHHHHHHHHHHHHHHHHHHHHhcccc
Q 014700          278 AMVVASKDRKLANAVQ-QLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG  335 (420)
Q Consensus       278 ~i~ia~~d~e~~~~l~-~ll~~~g~~v~~s~Di~g~e~~~alkNv~Ai~~G~~~gl~lg  335 (420)
                      ...+++.+....+.+. .+.+..+++.+....+   +.+..++|+..+..++..+.+++
T Consensus       150 ~~~~a~~~~~a~~~~~~~~~~~~g~~~~~~G~l---~~a~~~e~~~~l~~~~~~~~~~g  205 (212)
T d1jaya_         150 DVPVCGDDDESKKVVMSLISEIDGLRPLDAGPL---SNSRLVESLTPLILNIMRFNGMG  205 (212)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHSTTEEEEEEESG---GGHHHHHTHHHHHHHHHHHHTCC
T ss_pred             cceEEeCCHHHHHHHHHHHhhCCCeEEEEeChH---HHHHHHHhHHHHHHHHHHhCCCC
Confidence            5556666666655554 4556679987755544   33456677777777776655444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.86  E-value=9.3e-10  Score=98.58  Aligned_cols=127  Identities=13%  Similarity=0.205  Sum_probs=89.8

Q ss_pred             ccCCccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+-...+|.++.+.|.+   |.+..  ..+.++.  .++|||||+|.+|..+|..+..-|  .+|.+|++..........
T Consensus        18 R~i~~~~~~~r~g~w~~---~~~~~--~~~~~l~--g~tvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~~~~~~   88 (191)
T d1gdha1          18 RRAGEGEKMIRTRSWPG---WEPLE--LVGEKLD--NKTLGIYGFGSIGQALAKRAQGFD--MDIDYFDTHRASSSDEAS   88 (191)
T ss_dssp             TTHHHHHHHHHTTCCCC---CCTTT--TCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCCHHHHHH
T ss_pred             hCHHHHHHHHHcCCCCc---CCccc--cccceec--ccceEEeecccchHHHHHHHHhhc--cccccccccccccchhhc
Confidence            44455678888898876   65411  1223333  689999999999999999998776  899999976432222222


Q ss_pred             hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       171 ~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      ..              .....+++++++.||+|++++|. ...+.++ ++....++++.++|+++.|-..++
T Consensus        89 ~~--------------~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          89 YQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             HT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cc--------------ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            11              12334788999999999999995 4455555 345667889999999999866553

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.85  E-value=2.5e-10  Score=105.83  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=111.5

Q ss_pred             CCeEEEEcccH--HHHHHHH------HHHhcCCCCeEEEEeCCHHHH-HHHHHhcCCCCCCCC-----------------
Q 014700          127 TNKVVVLGGGS--FGTAMAA------HVANKKSQLKVYMLMRDPAVC-QSINEKHCNCRYFPE-----------------  180 (420)
Q Consensus       127 ~mkI~IIGaGa--mG~alA~------~La~aG~~~~V~l~~r~~~~~-~~i~~~g~~~~~l~~-----------------  180 (420)
                      ..++.++|+|.  ||.-++.      .|++.|  +.|++.|.+++++ +.+++.+ ...|.|+                 
T Consensus        40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g--~~v~~~d~d~~~v~~~~~~g~-~~i~~p~l~~~v~~~~~~~~~~~~  116 (242)
T d2b0ja2          40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEP--GLVVIDEFDPKEVMEAHLSGN-PESIMPKIREVVKAKAKELPKPPK  116 (242)
T ss_dssp             CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSS--EEEECCCSCHHHHHHHHHTTC-GGGTHHHHHHHHHHHHHTSCCTTT
T ss_pred             eeeeeeeeecHHhhhhchhhhhccchhhhhcC--CeEEEEeCCHHHHHHHHhcCC-chhhcchHHHHHHHHHHhccCCcc
Confidence            35788999997  7766666      678888  8999999997653 4444322 1111111                 


Q ss_pred             --CC--CC--CceEEeCCHHHhccCCcEEEEccCh-hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          181 --QK--LP--ENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       181 --~~--l~--~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                        +.  .|  .++++++|+.|+++++|+||+|||. +.+.+++++|.++++++++|++++. +.+..    ...+.+.+.
T Consensus       117 ~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~ST-i~~~~----~~~l~e~l~  191 (242)
T d2b0ja2         117 ACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACT-IPTTK----FAKIFKDLG  191 (242)
T ss_dssp             EEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSS-SCHHH----HHHHHHHTT
T ss_pred             chhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCC-CcHHH----HHHHHHhcc
Confidence              00  11  2578899999999999999999986 5689999999999999999998875 44432    223334443


Q ss_pred             CCCCCeEEEECcccHHHHhhcCCeEEEEecCCHHHHHHHHHHHhcCCceEEE
Q 014700          254 NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST  305 (420)
Q Consensus       254 ~~~~~~~vl~GP~~a~ev~~g~~t~i~ia~~d~e~~~~l~~ll~~~g~~v~~  305 (420)
                      .  ..+.++.++..+..-..+ ...+..+..+++.++++.++|+..|..++.
T Consensus       192 ~--kgi~vi~~hp~a~pe~~g-~~li~~~~aseE~iekv~elles~Gk~~~v  240 (242)
T d2b0ja2         192 R--EDLNITSYHPGCVPEMKG-QVYIAEGYASEEAVNKLYEIGKIARGKAFK  240 (242)
T ss_dssp             C--TTSEEEECBCSSCTTTCC-CEEEEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred             c--CCCEEECCCccCcCcccc-ceEEecCCCCHHHHHHHHHHHHHHCCCeEe
Confidence            3  234455443322111112 244455667889999999999998876553

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.85  E-value=4.6e-09  Score=93.61  Aligned_cols=129  Identities=18%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCC-----CCCceEEeCCHHHhccCCcE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~-----l~~~i~a~td~~eal~~aDi  202 (420)
                      |||+|||+|.+|.++|..|+ .|  ++|+++|.+++.++.+++ |..+.+.++..     ...++...++...+..++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~~v~~l~~-g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~i   76 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPSKVDKINN-GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAEL   76 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHHHHHHHHT-TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHHHHHHHhh-cccccchhhHHHHhhhhhhhhhccchhhhhhhcccc
Confidence            89999999999999998886 57  999999999999999986 33222211110     12345666677777889999


Q ss_pred             EEEccChh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       203 VIlaVp~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      +++|||+.           .+..+.+.+... .++.+++.-+ .+.+.+.+    .+.+.+..    ..+.+.|.+..+
T Consensus        77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~S-tv~pgt~~----~~~~~~~~----~~~~~~PE~i~~  145 (196)
T d1dlja2          77 VIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKS-TIPIGFIT----EMRQKFQT----DRIIFSPEFLRE  145 (196)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEECS-CCCTTHHH----HHHHHTTC----SCEEECCCCCCT
T ss_pred             ccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEeee-ecCceeee----eeeeccch----hhhccchhhcch
Confidence            99999953           244445555444 3455555433 35555432    23333322    224466776543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.83  E-value=2.3e-08  Score=85.49  Aligned_cols=119  Identities=13%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |.+.|||+|||+|.+|.++|..|+..|...+|.++|+++++++.....-.+...   . .........|+++ +++||+|
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~---~-~~~~~~~~~d~~~-~~~adiv   76 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA---F-TAPKKIYSGEYSD-CKDADLV   76 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG---G-SCCCEEEECCGGG-GTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc---c-cCCceEeeccHHH-hccccEE
Confidence            556789999999999999999999987556999999998765422211000000   0 1123445667765 7999999


Q ss_pred             EEccChh----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       204 IlaVp~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +++....                .++++.++|.++ .++.+++..+|..+     .+...+.+..|
T Consensus        77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvd-----v~t~~~~k~sg  136 (146)
T d1ez4a1          77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVD-----ILTYATWKFSG  136 (146)
T ss_dssp             EECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccH-----HHHHHHHHHHC
Confidence            9986321                244566666665 46778888887443     44555666554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.78  E-value=2.8e-09  Score=95.50  Aligned_cols=136  Identities=10%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             CccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ...++.++.|.|.+...|.+ .....+.++.  .++|||||+|.+|..+|..|..-|  .+|..|++..... .....+ 
T Consensus        19 ~~~~~~~~~g~w~~~~~~~~-~~~~~~~eL~--gktvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~-~~~~~~-   91 (193)
T d1mx3a1          19 TWLHQALREGTRVQSVEQIR-EVASGAARIR--GETLGIIGLGRVGQAVALRAKAFG--FNVLFYDPYLSDG-VERALG-   91 (193)
T ss_dssp             HHHHHHHHTTCCCCSHHHHH-HHTTTCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCTT-HHHHHT-
T ss_pred             HHHHHHHHcCCccccccccc-ccccCceeee--CceEEEeccccccccceeeeeccc--cceeeccCccccc-chhhhc-
Confidence            34567778887776422211 0011233444  689999999999999999998766  9999999864321 111111 


Q ss_pred             CCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       174 ~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                                   +...+++++.++.||+|++++|. ...+.++ ++....++++.++|+++.|-..++ +.+.+.+.+
T Consensus        92 -------------~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde-~aL~~aL~~  156 (193)
T d1mx3a1          92 -------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDE-KALAQALKE  156 (193)
T ss_dssp             -------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHHH
T ss_pred             -------------cccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcH-HHHHHHHHc
Confidence                         23445899999999999999994 3344444 334567889999999999876553 233344443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.76  E-value=3.8e-09  Score=93.68  Aligned_cols=122  Identities=19%  Similarity=0.199  Sum_probs=84.3

Q ss_pred             ccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCC
Q 014700           95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN  174 (420)
Q Consensus        95 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~  174 (420)
                      ..++.++.+.|.+.  +.    .   ..+  ..++|+|||+|.+|..+|..|..-|  .+|.+|+|++..       +. 
T Consensus        21 ~~~~~~~~~~w~~~--~~----~---~~l--~gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~~~-------~~-   79 (181)
T d1qp8a1          21 QYGEKMKRGDYGRD--VE----I---PLI--QGEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPKE-------GP-   79 (181)
T ss_dssp             HHHHHHHTTCCCCC--SC----C---CCC--TTCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCCC-------SS-
T ss_pred             HHHHHHHcCCCCCC--CC----C---Ccc--cCceEEEeccccccccceeeeeccc--cccccccccccc-------cc-
Confidence            44566677766552  11    1   112  2689999999999999999999877  899999987521       10 


Q ss_pred             CCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 014700          175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (420)
Q Consensus       175 ~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~  250 (420)
                                  .....++++.++.||+|++++|. ...+.++ ++....++++.++|+++.|-..++ +.+.+.+.+
T Consensus        80 ------------~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~-~aL~~aL~~  144 (181)
T d1qp8a1          80 ------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR-DGVLRILKE  144 (181)
T ss_dssp             ------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred             ------------eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc-hhhhhhccc
Confidence                        11234788999999999999995 3444444 445677889999999999854443 233344443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.72  E-value=9.3e-09  Score=92.36  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             cccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCC
Q 014700           96 DRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC  175 (420)
Q Consensus        96 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~  175 (420)
                      .++.++++.|    +|.+    ..+.++.  .++|||||.|.+|..+|..|..-|  .+|.+|++......  ...+.  
T Consensus        22 ~~~~~~~~~~----~w~~----~~g~el~--gk~vgIiG~G~IG~~va~~l~~fg--~~V~~~d~~~~~~~--~~~~~--   85 (197)
T d1j4aa1          22 MDEKVARHDL----RWAP----TIGREVR--DQVVGVVGTGHIGQVFMQIMEGFG--AKVITYDIFRNPEL--EKKGY--   85 (197)
T ss_dssp             HHHHHHTTBC----CCTT----CCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCHHH--HHTTC--
T ss_pred             HHHHHHhCCC----CcCC----CcCcccc--CCeEEEecccccchhHHHhHhhhc--ccccccCccccccc--cccee--
Confidence            4445555655    3553    3344555  689999999999999999998766  89999997654321  11111  


Q ss_pred             CCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          176 RYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       176 ~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                                   ...++++.++.||+|++++|. ...+.++ ++....++++.++|+++.|-..++
T Consensus        86 -------------~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  139 (197)
T d1j4aa1          86 -------------YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDT  139 (197)
T ss_dssp             -------------BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             -------------eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhh
Confidence                         123788999999999999994 3444444 344566789999999999866543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=2.1e-08  Score=88.98  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||.|.+|..+|..+..-|  .+|..|++........ ..+              +. ..+++|+++.||+|+++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg--~~v~~~d~~~~~~~~~-~~~--------------~~-~~~l~ell~~sDiv~~~  105 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFG--AYVVAYDPYVSPARAA-QLG--------------IE-LLSLDDLLARADFISVH  105 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCHHHHH-HHT--------------CE-ECCHHHHHHHCSEEEEC
T ss_pred             ceeeeeccccchhHHHHHHhhhcc--ceEEeecCCCChhHHh-hcC--------------ce-eccHHHHHhhCCEEEEc
Confidence            689999999999999999998765  8999999865432222 211              12 23788999999999999


Q ss_pred             cCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|. ...+.++ ++....++++.++|+++.|-..++
T Consensus       106 ~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde  141 (184)
T d1ygya1         106 LPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDE  141 (184)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred             CCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhh
Confidence            994 4455555 345677889999999999966553

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.61  E-value=3.1e-08  Score=88.10  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||+|.+|..+|..|..-|  .+|.+|++...........+              +....++++.++.||+|+++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~~~~~~~~--------------~~~~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFD--VHLHYTDRHRLPESVEKELN--------------LTWHATREDMYPVCDVVTLN  107 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCCHHHHHHHT--------------CEECSSHHHHGGGCSEEEEC
T ss_pred             ccceeeccccccchhhhhhhhccC--ceEEEEeecccccccccccc--------------ccccCCHHHHHHhccchhhc
Confidence            679999999999999999998776  89999998643222222221              23445889999999999999


Q ss_pred             cCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|. ...+.++ ++....++++.++|+++.|-..++
T Consensus       108 ~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~  143 (188)
T d2naca1         108 CPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR  143 (188)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             ccccccchhhhHHHHHHhCCCCCEEEecCchhhhhH
Confidence            995 3455555 345667889999999999866553

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=1.5e-07  Score=79.67  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.+|.++|..|+..+...++.++|++++.++...........   + .......+.+. +++++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~---~-~~~~~~~~~~~-~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP---F-TRRANIYAGDY-ADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---G-SCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc---c-cccccccCCcH-HHhcCCCEEEEec
Confidence            79999999999999999999887656899999998765422211100000   0 11112233454 4589999999985


Q ss_pred             Ch-----h-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          208 PV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       208 p~-----~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      -.     .           .++++++.|.++- |+.+++..+|.++     .+...+.+..|
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd-----~~t~~~~k~sg  131 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD-----VLTYFFLKESG  131 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH-----HHHHHHHHHHT
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHH-----HHHHHHHHHHC
Confidence            21     1           2455556666654 6778888888543     45556666544

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.60  E-value=9.9e-08  Score=82.13  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |++.+||+|||+|.+|..+|..|+..+. .++.++|.+++.++.....-.+..  ........+..+++.++++++||+|
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~adiV   80 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVT--SVVDTNVSVRAEYSYEAALTGADCV   80 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHH--HHTTCCCCEEEECSHHHHHTTCSEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhc--cccCCeeEEeccCchhhhhcCCCeE
Confidence            5567899999999999999999998875 489999988765432221100000  0001122456677787889999999


Q ss_pred             EEccCh---------------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          204 LHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       204 IlaVp~---------------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +++...                     ..++++++.+.++- ++.+++.++|-++     .+...+.+..|
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd-----~lt~~~~~~sg  145 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD-----CMVKVMCEASG  145 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH-----HHHHHHHHHHC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHH-----HHHHHHHHHhC
Confidence            997621                     02556666666654 5788888888553     34555666555

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.59  E-value=2.1e-07  Score=78.94  Aligned_cols=114  Identities=11%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~----i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|.+|.++|..|+.+|.-.++.++|++++.++-    ++...      +.......+....|.+ +++++|+|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~------~~~~~~~~i~~~~d~~-~~~~adiV   73 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA------AGIDKYPKIVGGADYS-LLKGSEII   73 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH------HTTTCCCEEEEESCGG-GGTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhc------cccCCCCccccCCCHH-HhccccEE
Confidence            7999999999999999999988754589999999876432    22110      0011122456667775 58999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      +++.-.                ..++++.+++.++ .++.+++..+|.++     .+...+.+..|-
T Consensus        74 vitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD-----~~t~~~~k~sg~  134 (142)
T d1ojua1          74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMD-----VMTYIMWKESGK  134 (142)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHH-----HHHHHHHHHSCC
T ss_pred             EEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChH-----HHHHHHHHHHCC
Confidence            997631                1244455556555 46788888888543     344556665443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.59  E-value=1e-08  Score=92.26  Aligned_cols=118  Identities=15%  Similarity=0.158  Sum_probs=82.5

Q ss_pred             CccccchhhhchhcceeccccccccccchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ...++.++.+.|++.   .    ...+.++.  .++|||||.|.+|..+|..|..-|  .+|.+|++....       ..
T Consensus        21 ~~~~~~~~~g~w~~~---~----~~~~~~l~--~ktvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~-------~~   82 (199)
T d1dxya1          21 GKVQAQLQAGDYEKA---G----TFIGKELG--QQTVGVMGTGHIGQVAIKLFKGFG--AKVIAYDPYPMK-------GD   82 (199)
T ss_dssp             HHHHHHHHTTCHHHH---T----CCCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCS-------SC
T ss_pred             HHHHHHHHhCCCCcc---c----Cccccccc--ceeeeeeecccccccccccccccc--eeeeccCCccch-------hh
Confidence            345666777877652   1    12233444  679999999999999999998766  999999986421       00


Q ss_pred             CCCCCCCCCCCCceEEeCCHHHhccCCcEEEEccCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       174 ~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaVp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                          .      ..+. ..++++.++.||+|++++|. ...+.++ ++....++++.++|+++.|-..++
T Consensus        83 ----~------~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          83 ----H------PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             ----C------TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             ----h------cchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence                0      0112 23788989999999999994 3444444 344566789999999999866553

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.59  E-value=2e-07  Score=79.65  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=76.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh--cCCCCCCCCCCCCCceEE-eCCHHHhccCCcEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~--g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiV  203 (420)
                      ..||+|||+|.+|.++|..|+..+...++.++|++++.++.....  +..     .+ ....+.+ ..+. +++++||+|
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~-----~~-~~~~~~~~~~d~-~~l~daDvv   78 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK-----VF-APKPVDIWHGDY-DDCRDADLV   78 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT-----TS-SSSCCEEEECCG-GGTTTCSEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc-----cc-cCCCeEEEECCH-HHhccceeE
Confidence            569999999999999999999987545899999998764322111  110     01 1112233 4455 558999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      +++.-.                ..++++.++|.++- ++.+++.++|..+     .+...+.+..|-
T Consensus        79 vitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd-----~~t~~~~k~sg~  139 (148)
T d1ldna1          79 VICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD-----ILTYATWKFSGL  139 (148)
T ss_dssp             EECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH-----HHHHHHHHHHTC
T ss_pred             EEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccH-----HHHHHHHHHHCc
Confidence            997532                12556667777764 5778888888544     455566666553

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.55  E-value=2e-07  Score=78.89  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=74.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      |||+|||+|.+|.++|..|+..+...++.++|++++..+...........  .......+..+++. +++++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~--~~~~~~~i~~~~~~-~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP--VGLFDTKVTGSNDY-ADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH--HHTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc--hhcccceEEecCCH-HHhcCCeEEEEEE
Confidence            79999999999999999999987556999999988654332211100000  00112234555665 5589999999985


Q ss_pred             C-----hh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          208 P-----VQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       208 p-----~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      -     ..           .++++++.+.++- |+.+++..+|.++     .+...+.+..|
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd-----~~~~~~~~~sg  133 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLD-----IMTHVAWVRSG  133 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHH-----HHHHHHHHHHC
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChH-----HHHHHHHHHhC
Confidence            2     11           2455666676654 6778888888543     34455555544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=6.9e-08  Score=85.76  Aligned_cols=94  Identities=17%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|+|||.|.+|..+|..|..-|  .+|..|++....       ..           .......++++.++.||+|+++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~-------~~-----------~~~~~~~~l~ell~~sDii~i~  103 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLG--MYVYFYDIENKL-------PL-----------GNATQVQHLSDLLNMSDVVSLH  103 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCC-------CC-----------TTCEECSCHHHHHHHCSEEEEC
T ss_pred             ceEEEEeecccchhhhhhhccccc--ceEeeccccccc-------hh-----------hhhhhhhhHHHHHhhccceeec
Confidence            689999999999999999998766  999999976421       00           0112335789999999999999


Q ss_pred             cCh-hhHHHHH-HHhhhcCCCCCeEEEeccCCCcch
Q 014700          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (420)
Q Consensus       207 Vp~-~~l~~vl-~~i~~~l~~~~iVVs~snGi~~~t  240 (420)
                      +|. ...+.++ ++....++++.++|+++.|-..++
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde  139 (188)
T d1sc6a1         104 VPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI  139 (188)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCH
T ss_pred             ccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhh
Confidence            994 4454444 445666789999999999866553

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.8e-07  Score=81.87  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             CCeEEEEcccHHHHHHHH--HHHhc-CC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMAA--HVANK-KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~--~La~a-G~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .|||+|||+|++|.+++.  .|+.. .. +.++.++|+++++++........  ..+....+.++..++|.+|++.+||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~--~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK--YVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH--HHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHH--HHHhcCCCeEEEEeCChhhcccCCCe
Confidence            489999999999987543  24432 11 25999999999876543221100  01112223467788999999999999


Q ss_pred             EEEccC
Q 014700          203 CLHAMP  208 (420)
Q Consensus       203 VIlaVp  208 (420)
                      |+.++-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            999864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.50  E-value=4.3e-07  Score=77.35  Aligned_cols=116  Identities=13%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      +||+|||+|.+|+++|..|+..|...++.++|++++.++.....-.+.  ......+.. ..+.|.++ +++||+||++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a--~~~~~~~~~-~~~~d~~~-l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA--MANLEAHGN-IVINDWAA-LADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH--GGGSSSCCE-EEESCGGG-GTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcc--ccccCCccc-eeccCHHH-hccccEEEEec
Confidence            699999999999999999998875458999999987653222110000  001111222 33556654 89999999974


Q ss_pred             Ch--------------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          208 PV--------------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       208 p~--------------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      ..                    ..++++.+.+..+ .++.+++..+|.++     .+...+.+..|
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD-----~~t~~~~k~sg  137 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD-----VITALFQHVTG  137 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH-----HHHHHHHHHhC
Confidence            31                    0144555556554 46788888888554     45566666655

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.47  E-value=7.8e-07  Score=75.45  Aligned_cols=115  Identities=10%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH--hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~--~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .||+|||+|.+|+++|..|+..+...++.++|++++.++....  .+.. .+.    -...+...++.+ ++++||+|++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~~----~~~~i~~~~~~~-~~~daDvVVi   75 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SFY----PTVSIDGSDDPE-ICRDADMVVI   75 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GGS----TTCEEEEESCGG-GGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-ccC----CCceeecCCCHH-HhhCCcEEEE
Confidence            4999999999999999999998865689999999876532211  1111 011    122455566765 4889999999


Q ss_pred             ccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          206 AMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       206 aVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      +.-.                ..++++..+|.++- ++.+++.++|..+     .+...+.+..|-
T Consensus        76 taG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvD-----vmt~~~~~~sg~  134 (143)
T d1llda1          76 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVD-----IATHVAQKLTGL  134 (143)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH-----HHHHHHHHHHTC
T ss_pred             ecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchH-----HHHHHHHHHHCC
Confidence            7531                12445556666653 6778888888543     455666666554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.45  E-value=4.6e-07  Score=75.26  Aligned_cols=95  Identities=11%  Similarity=0.121  Sum_probs=65.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCC-CCCCCCCCceEEeCCHHHh-ccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTA-LLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~-l~~~~l~~~i~a~td~~ea-l~~aDiVIl  205 (420)
                      |||.|+|+|.+|..+|..|.+.|  ++|++++.+++.++++.+.. .... .++..-+      ..++++ ++++|.++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~-~~~vi~Gd~~~~------~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEI-DALVINGDCTKI------KTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC-SSEEEESCTTSH------HHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhh-hhhhccCcccch------hhhhhcChhhhhhhcc
Confidence            89999999999999999999998  99999999999999887652 1111 1111000      012232 578999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEE
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFIS  231 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs  231 (420)
                      +++++...-++..+...+.+..+|+-
T Consensus        72 ~t~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          72 VTGKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHHcCCceEEEE
Confidence            99987654444445555665655543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.45  E-value=6.2e-07  Score=75.90  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=74.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV  207 (420)
                      +||+|||+|.+|+++|..|+..+. .++.++|++++..+.....-.+...+  ......+..+.|.++ ++++|+||++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~--~~~~~~i~~~~d~~~-~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPI--EGFDVRVTGTNNYAD-TANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTHHH--HTCCCCEEEESCGGG-GTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhccccc--cCCCCEEEecCcHHH-hcCCCEEEEee
Confidence            699999999999999999998875 48999998776543221110000000  011224566778776 78999999987


Q ss_pred             Chh----------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       208 p~~----------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      ...                .++++++.|.++ .++.+++.++|.++     .+...+.+..|
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvtNPvD-----v~t~~~~~~sg  133 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNNPLD-----AMTYLAAEVSG  133 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeCCchH-----HHHHHHHHHHC
Confidence            321                245566667665 45778888888543     34445555544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.45  E-value=2.2e-07  Score=79.88  Aligned_cols=97  Identities=13%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||.|||+|.||..+|..|+++|  |+|++|+|+.++++.+.+........ ..    ........++.+...|+++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~~~a~~l~~~~~~~~~~-~~----~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGVQHSTPI-SL----DVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCHHHHHHHHTTCTTEEEE-EC----CTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECChHHHHHHHhcccccccc-cc----cccchhhhHhhhhccceeEee
Confidence            479999999999999999999998  99999999999999988743211000 00    000011334557789999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|......+......   .+..++.+.
T Consensus        75 ~~~~~~~~~~~~~~~---~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFHATVIKSAIR---QKKHVVTTS   98 (182)
T ss_dssp             SCGGGHHHHHHHHHH---HTCEEECSS
T ss_pred             ccchhhhHHHHHHHh---hccceeecc
Confidence            998776555544433   234455443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.43  E-value=1e-06  Score=74.49  Aligned_cols=115  Identities=11%  Similarity=0.106  Sum_probs=70.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal~~aDiVIla  206 (420)
                      .||+|||+|.+|+++|..|+..+...++.++|++++.++.....-.+.     ..+....... .+. +++++||+|+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-----~~~~~~~~~~~~~~-~~~~~adivvit   75 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-----LPFMGQMSLYAGDY-SDVKDCDVIVVT   75 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-----CCCTTCEEEC--CG-GGGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-----cccCCCeeEeeCcH-HHhCCCceEEEe
Confidence            599999999999999999999875458999999887532211110000     1111122333 344 458999999998


Q ss_pred             cC--hh--------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          207 MP--VQ--------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       207 Vp--~~--------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      .-  ..              .++++++++.++- ++.+++.++|.++     .+...+.+..|-
T Consensus        76 ag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvd-----v~t~~~~k~sg~  133 (142)
T d1y6ja1          76 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVD-----IITYMIQKWSGL  133 (142)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHH-----HHHHHHHHHHTC
T ss_pred             cccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHH-----HHHHHHHHHHCC
Confidence            32  11              2445556666654 5678888888543     455666666553

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.38  E-value=2.1e-06  Score=74.13  Aligned_cols=115  Identities=16%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH--hcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~--~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..||+|||+|.+|+++|..|+..|.-.++.++|++++.++....  .+.. -+.    ....+....+.+ .+++||+|+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~-~~~----~~~~~~~~~d~~-~~~~adiVV   93 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS-LFL----QTPKIVADKDYS-VTANSKIVV   93 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG-GGC----CCSEEEECSSGG-GGTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccc-ccc----CCCeEEeccchh-hcccccEEE
Confidence            46999999999999999999999854589999999876532211  1110 000    011233445665 489999999


Q ss_pred             EccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          205 HAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       205 laVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      ++.-.                ..+++++.+|.++ .++.+++.++|..+     .+...+.+..|
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD-----v~t~~~~k~sg  152 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD-----ILTYVTWKLSG  152 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH-----HHHHHHHHHHC
Confidence            96421                1255566666665 46788888888544     44556666555

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=4.6e-07  Score=75.14  Aligned_cols=97  Identities=10%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEc
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIla  206 (420)
                      +++.|||+|.+|..+|..|.+.|  ++|++++.+++.++++.+.+... +..+..-+      ..++++ +.++|.+|++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~~~~-~~gd~~~~------~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHA-VIANATEE------NELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTCSEE-EECCTTCT------THHHHHTGGGCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhCCcc-eeeecccc------hhhhccCCccccEEEEE
Confidence            57999999999999999999998  99999999999998887655321 11111111      123343 6789999999


Q ss_pred             cChhhH-HHHHHHhhhcCCCCCeEEEecc
Q 014700          207 MPVQFS-SSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       207 Vp~~~l-~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +++... ..++..+....+.. .++...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-~iiar~~   99 (134)
T d2hmva1          72 IGANIQASTLTTLLLKELDIP-NIWVKAQ   99 (134)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCS-EEEEECC
T ss_pred             cCchHHhHHHHHHHHHHcCCC-cEEeecc
Confidence            997543 33344444544433 4444443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.33  E-value=8e-07  Score=76.63  Aligned_cols=96  Identities=13%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|.|||+|.||..++..|...|. .++++++|+.++++.+.+... .          .....+++.+.+.++|+||.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~-~----------~~~~~~~~~~~l~~~Divi~   90 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG-G----------EAVRFDELVDHLARSDVVVS   90 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT-C----------EECCGGGHHHHHHTCSEEEE
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh-c----------ccccchhHHHHhccCCEEEE
Confidence            36799999999999999999999882 479999999998888876521 1          11223467778899999999


Q ss_pred             ccChhh---HHHHHHHhhhcC--CCCCeEEEec
Q 014700          206 AMPVQF---SSSFLEGISDYV--DPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~---l~~vl~~i~~~l--~~~~iVVs~s  233 (420)
                      |+.+..   .++.++.....-  .+..++|.+.
T Consensus        91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            998642   344454433322  2234778874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.9e-06  Score=74.30  Aligned_cols=115  Identities=12%  Similarity=0.209  Sum_probs=74.0

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH----HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~----~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ...||+|||+|.+|+++|..|...|...++.++|++++.++    .+....   .+.   . ...+....|.++ +++||
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~---~~~---~-~~~~~~~~d~~~-~~~ad   89 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGS---LFL---S-TPKIVFGKDYNV-SANSK   89 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTT---TTC---S-CCEEEEESSGGG-GTTEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcc---hhc---C-CCeEEeccchhh-hcccc
Confidence            34699999999999999999999885568999999986543    333211   011   1 112344567655 79999


Q ss_pred             EEEEccCh------------h----hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC
Q 014700          202 YCLHAMPV------------Q----FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN  254 (420)
Q Consensus       202 iVIlaVp~------------~----~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~  254 (420)
                      +|+++.-.            .    .++++...+..+ .++.+++.++|.++     .+...+.+..|-
T Consensus        90 ivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvD-----v~t~~~~k~sg~  152 (159)
T d2ldxa1          90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVD-----ILTYVVWKISGF  152 (159)
T ss_dssp             EEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHH-----HHHHHHHHHHCS
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHH-----HHHHHHHHHHCc
Confidence            99997532            1    133333444443 46788888888543     445556666553

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.31  E-value=6e-07  Score=78.24  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             CCeEEEEcccHHHH--HHHHHHHhcC-C-CCeEEEEeCCHHH--HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGT--AMAAHVANKK-S-QLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~--alA~~La~aG-~-~~~V~l~~r~~~~--~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .|||+|||+|+.|.  .++..+.... . ..++.++|++++.  .+.+...+.  .++.....+..+..++|..+++++|
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~--~~~~~~~~~~~~~~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAK--RMVEKAGVPIEIHLTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHH--HHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHH--HHHHhcCCCceeeecCCchhhcCCC
Confidence            37999999997764  4445554421 1 1389999998743  333322110  0111122344567888988889999


Q ss_pred             cEEEEccChhh------------------------------------HHHHHHHhhhcCCCCCeEEEeccCCCcchhhhH
Q 014700          201 DYCLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMM  244 (420)
Q Consensus       201 DiVIlaVp~~~------------------------------------l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~  244 (420)
                      |+||++.....                                    ++++++++..+ .|+.+++..+|.++     .+
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPvd-----v~  152 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPAG-----MV  152 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH-----HH
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChHH-----HH
Confidence            99999985311                                    45555666665 46778887887543     34


Q ss_pred             HHHHHHHhC
Q 014700          245 SQIIPQALR  253 (420)
Q Consensus       245 se~l~~~lg  253 (420)
                      ...+.+..+
T Consensus       153 t~~~~k~~p  161 (169)
T d1s6ya1         153 TEAVLRYTK  161 (169)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHCC
Confidence            455555543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.31  E-value=2.1e-06  Score=72.92  Aligned_cols=112  Identities=14%  Similarity=0.256  Sum_probs=67.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH--HH----HHHHhcCCCCCCCCCCCCCceE--EeCCHHHhcc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV--CQ----SINEKHCNCRYFPEQKLPENVI--ATTDAKTALL  198 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~--~~----~i~~~g~~~~~l~~~~l~~~i~--a~td~~eal~  198 (420)
                      |||+|||+ |.+|.++|..|+..+.-.++.++|++++.  ++    .+.....      .......+.  ...+. ++++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~------~~~~~~~~~~~~~~d~-~~l~   73 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALA------GTRSDANIYVESDENL-RIID   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHT------TSCCCCEEEEEETTCG-GGGT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccc------ccccCCccccCCcchH-HHhc
Confidence            79999996 99999999999998754599999988632  22    2222100      000111222  22344 4589


Q ss_pred             CCcEEEEcc--C---hh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          199 GADYCLHAM--P---VQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       199 ~aDiVIlaV--p---~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      +||+||++.  |   ..           .++++.+.+.++- +..++| ++|.++     .+...+.+..|
T Consensus        74 ~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~iiv-VtNPvD-----~mt~~~~k~sg  137 (145)
T d1hyea1          74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFV-ITNPVD-----VMTYKALVDSK  137 (145)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEE-CSSSHH-----HHHHHHHHHHC
T ss_pred             cceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEEE-EcCchH-----HHHHHHHHHHC
Confidence            999999983  2   11           2455666676664 444544 677443     34455555544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.27  E-value=1.9e-06  Score=73.01  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             eEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCc-eEEeCCHHHhccCCcEEEEc
Q 014700          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN-VIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       129 kI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~-i~a~td~~eal~~aDiVIla  206 (420)
                      ||+|||| |.+|+++|..|+..+.-.++.++|.++.+.+.+--.+...      ..+.. ....++..+++++||+|+++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~------~~~~~~~~~~~~~~~~~~~aDivVit   75 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET------RATVKGYLGPEQLPDCLKGCDVVVIP   75 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS------SCEEEEEESGGGHHHHHTTCSEEEEC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh------hcCCCeEEcCCChHHHhCCCCEEEEC
Confidence            8999996 9999999999999875458999999876655443322111      11111 12234556778999999987


Q ss_pred             cCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       207 Vp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      --.                ..++++++.+.++ .++.+++.++|-++
T Consensus        76 ag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD  121 (144)
T d1mlda1          76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN  121 (144)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred             CCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence            431                1366677777776 56788888888654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.22  E-value=3.4e-06  Score=71.93  Aligned_cols=117  Identities=17%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||+|.+|+++|..|...+. .++.++|++++.++.....-.+...+  ...+..+....+.+ .++++|+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~--~~~~~~v~~~~~~~-~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVM--AYSNCKVSGSNTYD-DLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHH--HTCCCCEEEECCGG-GGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccc--cCCCcEEEeccccc-ccCCCcEEEEe
Confidence            4699999999999999999888875 58999999876543222110000000  00122344445554 57999999997


Q ss_pred             cChh---------------------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          207 MPVQ---------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       207 Vp~~---------------------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      .-..                     .++++++.+.++ .++.+++.++|-++     .+...+.+..|
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPvD-----~~t~~~~~~sg  140 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPVD-----VMVQLLHQHSG  140 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchH-----HHHHHHHHHHC
Confidence            5310                     245555666665 36788888888543     45566666544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.8e-06  Score=74.99  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CCeEEEEcccHHHHHHH--HHHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGGGSFGTAMA--AHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA--~~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ..||+|||+|..|++.+  ..|...- . ..++.++|.++++++...+...  .+......+..+..++|..|++++||+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD--VFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHH--HHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHH--HHHHHhCCCcceEecCChhhccCCCCE
Confidence            46999999999987644  3333221 0 1389999999987653222100  000001123456788899999999999


Q ss_pred             EEEccCh------------------------------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 014700          203 CLHAMPV------------------------------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (420)
Q Consensus       203 VIlaVp~------------------------------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se  246 (420)
                      ||++.-.                                    ..+.++++.+.++- |+.+++..+|.++     .+.+
T Consensus        81 Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvd-----v~t~  154 (167)
T d1u8xx1          81 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA-----IVAE  154 (167)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH-----HHHH
T ss_pred             EEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHH-----HHHH
Confidence            9999642                                    12345555555553 6777787887443     3455


Q ss_pred             HHHHHhC
Q 014700          247 IIPQALR  253 (420)
Q Consensus       247 ~l~~~lg  253 (420)
                      .+.+.++
T Consensus       155 ~~~k~~P  161 (167)
T d1u8xx1         155 ATRRLRP  161 (167)
T ss_dssp             HHHHHST
T ss_pred             HHHHHCC
Confidence            5555543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.20  E-value=2.6e-06  Score=76.36  Aligned_cols=107  Identities=18%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             cchhhcCCCeEEEEcccHHHHHHHHHHHhcC----CCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKK----SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG----~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      ..+..+.++||+|||.|+-|.+=|..|.++|    .+.+|++--|.. ...+...+.|....         +..+ -+.+
T Consensus        37 ~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~---------~~~v-~~v~  106 (226)
T d1qmga2          37 LPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE---------NGTL-GDMW  106 (226)
T ss_dssp             HHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG---------GTCE-EEHH
T ss_pred             hHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC---------CCcc-cCHH
Confidence            3456677789999999999999999999965    125677665554 23445555553211         1111 2567


Q ss_pred             HhccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          195 TALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       195 eal~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+++.+|+|++.+|+..-.++.++|.++++++..+.. +-|+.
T Consensus       107 EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~F-aHGFn  148 (226)
T d1qmga2         107 ETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGL-SHGFL  148 (226)
T ss_dssp             HHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE-SSSHH
T ss_pred             HHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeee-cchhh
Confidence            8899999999999999999999999999999988754 44553

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=2.6e-06  Score=73.48  Aligned_cols=76  Identities=17%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             CeEEEEcccHHHHHHHHHH-HhcC---CCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHV-ANKK---SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~L-a~aG---~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |||+|||+|..|++++... ++.-   ...++.++|+++++.+...+.....     ...+..+.++++.++++++||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~-----~~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRL-----VKDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHH-----HTTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhh-----hccCceEEEecCcccccCCCCEE
Confidence            7999999999998887543 2211   0158999999998766443321000     01123567778888999999999


Q ss_pred             EEccC
Q 014700          204 LHAMP  208 (420)
Q Consensus       204 IlaVp  208 (420)
                      |++.-
T Consensus        76 Vita~   80 (162)
T d1up7a1          76 IFQFR   80 (162)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            99764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=4.6e-06  Score=72.30  Aligned_cols=93  Identities=23%  Similarity=0.335  Sum_probs=74.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .++|+|||.|+=|.+=|..|.++|  .+|++--|... ..+...+.|.              .+ -+.+|+++.+|+|.+
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG--~~V~VGLr~gs~s~~~A~~~Gf--------------~v-~~~~eA~~~aDiim~   78 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHGL--------------KV-ADVKTAVAAADVVMI   78 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTTC--------------EE-ECHHHHHHTCSEEEE
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcC--CCEEEEcCCCCccHHHHhhhcc--------------cc-ccHHHHhhhcCeeee
Confidence            479999999999999999999999  89998777653 3344455443              22 268899999999999


Q ss_pred             ccChhhHHHHHH-HhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~-~i~~~l~~~~iVVs~snGi~  237 (420)
                      .+|+..-.++.+ +|.+++++++.+.. +-|+.
T Consensus        79 L~PD~~q~~vy~~~I~p~lk~g~~L~F-aHGfn  110 (182)
T d1np3a2          79 LTPDEFQGRLYKEEIEPNLKKGATLAF-AHGFS  110 (182)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEE-SCCHH
T ss_pred             ecchHHHHHHHHHhhhhhcCCCcEEEE-eccce
Confidence            999998888885 79999999988764 44654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=5.4e-06  Score=70.74  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCC-C----CeEEEEe--CCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-Q----LKVYMLM--RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~-~----~~V~l~~--r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      |++.|||+|||| |.+|+++|..|+..+. +    ....+++  ++.+..+.+...-..    ........+...++..+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   76 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED----CAFPLLAGLEATDDPKV   76 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT----TTCTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhc----cccccccccccCCchhh
Confidence            456789999997 9999999999998652 1    1123333  333333332211000    01122335566777888


Q ss_pred             hccCCcEEEEccC-----h-----------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          196 ALLGADYCLHAMP-----V-----------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       196 al~~aDiVIlaVp-----~-----------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +++++|+||++--     .           ..++++.+.|.++.+++.+|+.++|-++
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            8999999999752     1           1355666677777667787877887443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=1.9e-05  Score=68.68  Aligned_cols=97  Identities=11%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc--cCCcEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYCL  204 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal--~~aDiVI  204 (420)
                      +||||||+|.||...+..|.... +.+|+ +++++++.++.+.+..         .++...+..+|+++.+  .+.|+|+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~iD~v~   71 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATAN---------NYPESTKIHGSYESLLEDPEIDALY   71 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT---------TCCTTCEEESSHHHHHHCTTCCEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccchhcc---------ccccceeecCcHHHhhhccccceee
Confidence            69999999999999999998764 36777 6799998877776542         1233456778898876  4579999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +|+|.....+++..+..   .+..|+ +-|.+..
T Consensus        72 I~tp~~~h~~~~~~~l~---~g~~v~-~EKP~~~  101 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAE---KGKHIL-LEKPVAM  101 (184)
T ss_dssp             ECCCGGGHHHHHHHHHT---TTCEEE-ECSSCSS
T ss_pred             ecccchhhcchhhhhhh---ccceee-ccccccc
Confidence            99998877666655544   355443 4555543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.3e-05  Score=67.81  Aligned_cols=102  Identities=20%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhc-CCCCeEEEEeCCHHHH-HHHHHhcCCCCCCCCCCCCCceEE-eCCHHHhccCCcEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPAVC-QSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~a-G~~~~V~l~~r~~~~~-~~i~~~g~~~~~l~~~~l~~~i~a-~td~~eal~~aDiV  203 (420)
                      |||+||| +|.+|+++|..|+.. +...++.++|..+... +.+--.+...      ..+..... .++. ++++++|+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~------~~~~~~~~~~~~~-~~~~~aDvv   73 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT------AVKIKGFSGEDAT-PALEGADVV   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCS------SCEEEEECSSCCH-HHHTTCSEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCcc------ccCCcEEEcCCCc-cccCCCCEE
Confidence            7999999 599999999988643 4447999999865321 1111112110      11111112 2344 468999999


Q ss_pred             EEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          204 LHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       204 IlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++--.                ..++++.++|.++- ++.+++.++|.++
T Consensus        74 vitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD  122 (145)
T d2cmda1          74 LISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVN  122 (145)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred             EECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCch
Confidence            997521                13566777777765 5778888888654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=7.7e-06  Score=70.01  Aligned_cols=93  Identities=12%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             CeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|||+|.||.- ....|.... +.++. +++++++..+.+.+.. +            +...++.++++++.|+|++
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~-~~~i~~v~d~~~~~~~~~~~~~-~------------~~~~~~~~~l~~~~D~V~I   67 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESW-R------------IPYADSLSSLAASCDAVFV   67 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHH-T------------CCBCSSHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEEechhHhhhhhhhcc-c------------ccccccchhhhhhcccccc
Confidence            69999999999975 566666543 26665 6789888777776542 1            1234577787889999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |+|.....+++.....   .+..|+ +-|.+..
T Consensus        68 ~tp~~~h~~~~~~al~---~gk~V~-~EKPla~   96 (164)
T d1tlta1          68 HSSTASHFDVVSTLLN---AGVHVC-VDKPLAE   96 (164)
T ss_dssp             CSCTTHHHHHHHHHHH---TTCEEE-EESSSCS
T ss_pred             cccchhcccccccccc---ccceee-ccccccC
Confidence            9998887777766554   344443 4554443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.92  E-value=4.6e-05  Score=65.14  Aligned_cols=93  Identities=18%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             CeEEEEcccHHHHH-HHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEEE
Q 014700          128 NKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~a-lA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVIl  205 (420)
                      |||+|||+|.||.. ....|.+.+ +.++.+++++++..+.+.+.....            ...+|.+++++ +.|+|++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~iD~V~I   68 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS------------ATCTDYRDVLQYGVDAVMI   68 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC------------CCCSSTTGGGGGCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhcccc------------cccccHHHhcccccceecc
Confidence            79999999999976 556666554 378889999999888887642111            12345556554 6799999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|.....+++..+...   +..|+ +-|.+.
T Consensus        69 ~tp~~~H~~~~~~al~~---gk~V~-~EKP~~   96 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHL---GIPTF-VDKPLA   96 (167)
T ss_dssp             CSCGGGHHHHHHHHHHT---TCCEE-EESCSC
T ss_pred             ccccccccccccccccc---ccccc-cCCCCc
Confidence            99998887777666552   34333 445443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=4.7e-05  Score=66.07  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCeEEEEcccHHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~a-lA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      .+||+|||+|.||.. ....+.+.....+|. +++++++.++.+.+...            ....++|.+|.++  +.|+
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~------------~~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCCSE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc------------ccceeeeeeccccccccce
Confidence            469999999999986 466676543124655 78999988887766421            1245678888765  5799


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      |++|+|.....+++..+..   .+..|+ +-|.+..
T Consensus        71 v~I~tp~~~h~~~~~~al~---~gk~V~-~EKPl~~  102 (181)
T d1zh8a1          71 VDLTLPVELNLPFIEKALR---KGVHVI-CEKPIST  102 (181)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSSS
T ss_pred             eeccccccccccccccccc---cchhhh-cCCCCcC
Confidence            9999999887777776655   344443 3555543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.1e-05  Score=67.62  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             chhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          121 TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       121 ~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      ++++-..++++|+|.|.+|..+|..|...|  .+|+++++++...-+..-.|              ..+ ...++++..+
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp~~al~A~~dG--------------~~v-~~~~~a~~~a   80 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDPINALQAAMEG--------------YEV-TTMDEACQEG   80 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEE-CCHHHHTTTC
T ss_pred             hCceecCCEEEEeccccccHHHHHHHHhCC--CeeEeeecccchhHHhhcCc--------------eEe-eehhhhhhhc
Confidence            456667899999999999999999999988  99999999985432222222              122 3678899999


Q ss_pred             cEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+++.++....+  +-.+-.+.++++.++.++.
T Consensus        81 divvtaTGn~~v--I~~eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          81 NIFVTTTGCIDI--ILGRHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             SEEEECSSCSCS--BCHHHHTTCCTTEEEEECS
T ss_pred             cEEEecCCCccc--hhHHHHHhccCCeEEEEec
Confidence            999999986442  1123345577888877653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.85  E-value=8e-05  Score=62.56  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCH--HHHH----HHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~--~~~~----~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      .||+||| +|.+|.++|..|...+...++.++|++.  +..+    .+... .   .   +..+..+. +.+.++ +++|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~-~---~---~~~~~~i~-~~~~~~-~~~a   71 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG-I---A---YDSNTRVR-QGGYED-TAGS   71 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH-H---T---TTCCCEEE-ECCGGG-GTTC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhc-c---c---ccCCceEe-eCCHHH-hhhc
Confidence            3899999 6999999999999988545899999643  2222    22211 0   0   11112232 345554 7899


Q ss_pred             cEEEEccC-----hh-----------hHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 014700          201 DYCLHAMP-----VQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (420)
Q Consensus       201 DiVIlaVp-----~~-----------~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg  253 (420)
                      |+|+++--     ..           .++++.+.|.++- ++.+++.++|.++     .+...+.+..|
T Consensus        72 DiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvD-----vmt~~~~k~sg  134 (142)
T d1o6za1          72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVD-----LLNRHLYEAGD  134 (142)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHH-----HHHHHHHHHSS
T ss_pred             CEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHH-----HHHHHHHHHHC
Confidence            99999742     11           2445555666543 5778888888554     45556666544

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.75  E-value=5.2e-05  Score=64.40  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=72.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCC-----CCeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~-----~~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      .|||+|||| |.+|.++|..|+..+.     ..++.++|.++.  .++.+.-....    ........+...++..++++
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~   78 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD----CALPLLKDVIATDKEEIAFK   78 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH----TCCTTEEEEEEESCHHHHTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcc----cccccccccccCcccccccC
Confidence            579999996 9999999999986531     125667776543  33333211000    01112234566778888899


Q ss_pred             CCcEEEEccCh----------------hhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh
Q 014700          199 GADYCLHAMPV----------------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL  252 (420)
Q Consensus       199 ~aDiVIlaVp~----------------~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~l  252 (420)
                      ++|+||++--.                ..++++.+.|.++.++..+++.++|-++     .+...+.+..
T Consensus        79 ~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD-----~mt~v~~k~s  143 (154)
T d5mdha1          79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN-----TNCLTASKSA  143 (154)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH-----HHHHHHHHTC
T ss_pred             CceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH-----HHHHHHHHHc
Confidence            99999997521                1356666777777665655666777433     3444555543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.74  E-value=7.5e-05  Score=64.22  Aligned_cols=88  Identities=11%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||+|||+|.||..++..|.+.. +.+++ +++++++.       ..          ........+.++...+.|+|++
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~-~~elvav~~~~~~~-------~~----------~~~~~~~~~~~~~~~~~D~Vvi   64 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATL-------DT----------KTPVFDVADVDKHADDVDVLFL   64 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCC-------SS----------SSCEEEGGGGGGTTTTCSEEEE
T ss_pred             cceEEEECChHHHHHHHHHHHhCC-CcEEEEEEeccccc-------cc----------ccccccchhhhhhccccceEEE
Confidence            478999999999999999998753 36665 56676431       00          1134455566677788999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|+....+++...   +..|.-+|.+.+.
T Consensus        65 ~tp~~~h~~~a~~a---L~aG~~vv~~~~~   91 (170)
T d1f06a1          65 CMGSATDIPEQAPK---FAQFACTVDTYDN   91 (170)
T ss_dssp             CSCTTTHHHHHHHH---HTTTSEEECCCCC
T ss_pred             eCCCcccHHHHHHH---HHCCCcEEEecCc
Confidence            99988766655443   4456666655443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00012  Score=62.69  Aligned_cols=127  Identities=12%  Similarity=0.118  Sum_probs=80.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ..+||+|+|+ |.||..++..+.+.. +.++. .++|....  .+   +.....+.+. -+.++...+++++....+|+|
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~-~~~lv~~~~~~~~~--~~---g~d~~~~~~~-~~~~~~~~~~~~~~~~~~DVi   75 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSS--LL---GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVF   75 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCT--TC---SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecccch--hc---cchhhhhhcc-ccCCceeeccHHHHhcccceE
Confidence            3579999996 999999999998864 25554 34443211  00   1111111111 133566778888888899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHHH
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~e  270 (420)
                      |=.+.+..+.+.++....   .+..+|.-+.|+..+..    +.+++. ..   ...++..|++...
T Consensus        76 IDFs~p~~~~~~~~~a~~---~~~~~ViGTTG~~~~~~----~~i~~~-a~---~ipi~~apN~SlG  131 (162)
T d1diha1          76 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGK----QAIRDA-AA---DIAIVFAANFSMT  131 (162)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHH----HHHHHH-TT---TSCEEECSCCCHH
T ss_pred             EEeccHHHHHHHHHHHHh---ccceeEEecCCCcHHHH----HHHHHH-cC---CCCEEEEccccHH
Confidence            998888888777766554   35677778889876532    233333 22   2346888987643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.57  E-value=0.00028  Score=61.11  Aligned_cols=109  Identities=10%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             hcCCCeEEEEcc-cHHHHHHHHHHHhcCC---C--CeEEEEeCCHH--HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          124 LERTNKVVVLGG-GSFGTAMAAHVANKKS---Q--LKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       124 ~~~~mkI~IIGa-GamG~alA~~La~aG~---~--~~V~l~~r~~~--~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      ++...||+|+|| |.+|.+++..|+....   +  .++.++|.++.  .++.+.-.-...    ...+...+..+++..+
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~----a~~~~~~~~~~~~~~~   96 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS----LYPLLREVSIGIDPYE   96 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----TCTTEEEEEEESCHHH
T ss_pred             cCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc----ccccccCccccccchh
Confidence            344569999996 9999999999987531   1  25667776553  223222110000    1122235667788889


Q ss_pred             hccCCcEEEEccC-----h-----------hhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          196 ALLGADYCLHAMP-----V-----------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       196 al~~aDiVIlaVp-----~-----------~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +++++|+||++--     .           ..++++.+.|.++.+++.+|+.++|-+
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPv  153 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC  153 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcH
Confidence            9999999999752     1           125566677778777788787788743

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.8e-06  Score=71.88  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             cCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      +.|+||.|+|+ |.+|++++..|.++|  |+|+++.|++++.......+.  ..+     ...+.-.++++++++++|+|
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~~--~~~-----~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRLPSEGPRPA--HVV-----VGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGSCSSSCCCS--EEE-----ESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcChhhccccccccc--ccc-----cccccchhhHHHHhcCCCEE
Confidence            35789999995 999999999999998  999999999875322211111  000     00001112456678999999


Q ss_pred             EEccC
Q 014700          204 LHAMP  208 (420)
Q Consensus       204 IlaVp  208 (420)
                      |.++.
T Consensus        72 i~~~g   76 (205)
T d1hdoa_          72 IVLLG   76 (205)
T ss_dssp             EECCC
T ss_pred             EEEec
Confidence            99875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=9.4e-05  Score=63.56  Aligned_cols=96  Identities=11%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|+|+|..+.+++..|.+.|  .+|++++|+.++++.+.+.....         ..+...+..+....++|+||-|
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt~~ka~~l~~~~~~~---------~~~~~~~~~~~~~~~~dliIN~   86 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAHT---------GSIQALSMDELEGHEFDLIINA   86 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGGG---------SSEEECCSGGGTTCCCSEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHhcccc--eEEEeccchHHHHHHHHHHHhhc---------ccccccccccccccccceeecc
Confidence            579999999999999999999988  78999999999988887642111         0123322222224578999999


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|.....+....-...++++.+++.+.
T Consensus        87 Tp~G~~~~~~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          87 TSSGISGDIPAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             CSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             cccCcccCCCCCcHHHhccCcEEEEee
Confidence            995432211111123466777777764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.52  E-value=0.00016  Score=61.73  Aligned_cols=94  Identities=16%  Similarity=0.104  Sum_probs=69.5

Q ss_pred             cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      .++++-..+++.|+|.|-+|..+|.+|...|  ..|+++.++|-.  .++..-      .+      .++ .+.+|+++.
T Consensus        16 ~t~~~laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~DPi~--alqA~m------dG------f~v-~~~~~a~~~   78 (163)
T d1v8ba1          16 ATDFLISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPIC--AIQAVM------EG------FNV-VTLDEIVDK   78 (163)
T ss_dssp             HHCCCCTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHH--HHHHHT------TT------CEE-CCHHHHTTT
T ss_pred             HhCceecCCEEEEecccccchhHHHHHHhCC--CEEEEEecCchh--hHHHHh------cC------Ccc-CchhHcccc
Confidence            3467778899999999999999999999988  899999999843  444321      11      222 368899999


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +|++|.++....+-  -.+-...++++.+|.++
T Consensus        79 aDi~vTaTGn~~vI--~~~h~~~MKdgaIl~N~  109 (163)
T d1v8ba1          79 GDFFITCTGNVDVI--KLEHLLKMKNNAVVGNI  109 (163)
T ss_dssp             CSEEEECCSSSSSB--CHHHHTTCCTTCEEEEC
T ss_pred             CcEEEEcCCCCccc--cHHHHHHhhCCeEEEec
Confidence            99999999875420  12224557778777665

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.50  E-value=0.00022  Score=63.91  Aligned_cols=98  Identities=9%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       127 ~mkI~IIGaGamG~-alA~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      .-||+|||+|.||. .+...+.... +.+|. ++|++++.++.+.+.. +..       +..+...+|.++++.  +.|+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~-~~~ivav~d~~~~~a~~~~~~~-~i~-------~~~~~~~~d~~ell~~~~iD~  103 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEY-GVD-------PRKIYDYSNFDKIAKDPKIDA  103 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHT-TCC-------GGGEECSSSGGGGGGCTTCCE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhh-ccc-------cccccccCchhhhccccccee
Confidence            45999999999997 4555665542 26766 7899999888877642 110       113445567888765  5799


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |++|+|.....+++.+...   .+..|+ +-|-+.
T Consensus       104 V~I~tp~~~H~~~~~~al~---~gk~v~-~EKPla  134 (221)
T d1h6da1         104 VYIILPNSLHAEFAIRAFK---AGKHVM-CEKPMA  134 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred             eeeccchhhhhhHHHHhhh---cchhhh-cCCCcc
Confidence            9999999887776665544   344443 455444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.49  E-value=4.3e-05  Score=65.85  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .-||.|||+|..|..-++...+-|  -+|+++|.+.+..+.+.........     .  ...-...+++.+++||+||-+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~~~~-----~--~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSRVE-----L--LYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGGSE-----E--EECCHHHHHHHHHTCSEEEEC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcccce-----e--ehhhhhhHHHhhccCcEEEEe
Confidence            469999999999999999998888  8999999999988888765321100     0  000011356778899999998


Q ss_pred             cCh--hhHHH-HHHHhhhcCCCCCeEEEec
Q 014700          207 MPV--QFSSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~--~~l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      +-.  ..-.. +-++....++++.+||+++
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            742  11111 1244556688999999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=7.6e-05  Score=64.45  Aligned_cols=97  Identities=14%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..++|.|+|+|.++.+++..|.+.+  .+|++++|+.++++.+.+.-..         ..++......+..+.++|+||-
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~---------~~~~~~~~~~~~~~~~~diiIN   85 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP---------YGNIQAVSMDSIPLQTYDLVIN   85 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG---------GSCEEEEEGGGCCCSCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhh---------ccccchhhhccccccccceeee
Confidence            3579999999999999999999865  7999999999998888764210         0122332222233678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+|..............++++.+++.+.
T Consensus        86 ~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          86 ATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             CCCC-------CCCHHHHHHCSCEEESC
T ss_pred             cccccccccccchhhhhhcccceeeeee
Confidence            9996532222111122233456666654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00035  Score=57.42  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=66.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |||+|+|+ |.||..++..+.+.+  +++..- +++                               ..+.+.++|+||=
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~--~~l~~~id~~-------------------------------~~~~~~~~DVvID   47 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVN-------------------------------GVEELDSPDVVID   47 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETT-------------------------------EEEECSCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCC--CeEEEEECCC-------------------------------cHHHhccCCEEEE
Confidence            79999996 999999999988877  777632 321                               1123567999998


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccH
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA  268 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a  268 (420)
                      .+.+..+.+.++....+   +..+|..+.|+..+..    +.+.+. ..   ...++..|++.
T Consensus        48 FS~p~~~~~~l~~~~~~---~~p~ViGTTG~~~~~~----~~i~~~-ak---~~pv~~a~N~s   99 (128)
T d1vm6a3          48 FSSPEALPKTVDLCKKY---RAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYSRT   99 (128)
T ss_dssp             CSCGGGHHHHHHHHHHH---TCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCTH
T ss_pred             ecCHHHHHHHHHHHHhc---CCCEEEEcCCCCHHHH----HHHHHH-Hh---hCCEEeeeccC
Confidence            88888877777766543   5677888889886532    233333 21   24567777764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.30  E-value=0.00015  Score=69.34  Aligned_cols=98  Identities=12%  Similarity=0.209  Sum_probs=69.3

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++..+++|||+|..+..-+..+..- +. .+|.+|+|+++..+++.++-..   .    ..-.+.+.+++++++++||+|
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i-~~V~v~~r~~~~~~~~~~~l~~---~----~g~~v~~~~s~~eav~~ADIi  197 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGI-EEIVAYDTDPLATAKLIANLKE---Y----SGLTIRRASSVAEAVKGVDII  197 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCC-CEEEEECSSHHHHHHHHHHHTT---C----TTCEEEECSSHHHHHTTCSEE
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcce-eeeEEEecChHHHHHHHHhhhh---c----cCCCceecCCHHHHHhcCCce
Confidence            3457999999999999888877553 22 6899999999888777654211   0    112466788999999999999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      +.|+.+.....++.  ...+++++.|..+
T Consensus       198 ~t~Tas~s~~Pv~~--~~~l~pG~hI~ai  224 (340)
T d1x7da_         198 TTVTADKAYATIIT--PDMLEPGMHLNAV  224 (340)
T ss_dssp             EECCCCSSEEEEEC--GGGCCTTCEEEEC
T ss_pred             eeccccCCCCcccc--hhhcCCCCEEeec
Confidence            99996543212221  3567888877655

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.28  E-value=0.00031  Score=59.76  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             hcCCCeEEEEcccHHHHH-HHHHHHhcCCCCeEEE-EeCCHH-H-HHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh---
Q 014700          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYM-LMRDPA-V-CQSINEKHCNCRYFPEQKLPENVIATTDAKTA---  196 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~a-lA~~La~aG~~~~V~l-~~r~~~-~-~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea---  196 (420)
                      |...+||||||+|.+|.- +...|.... ..++.. .+|+.+ . .+...+.+..             ......++.   
T Consensus         1 M~kkirvaIIGaG~ig~~~~~~~l~~~~-~~el~avas~~~~~~~~~~a~~~~i~-------------~~~~~~d~l~~~   66 (157)
T d1nvmb1           1 MNQKLKVAIIGSGNIGTDLMIKVLRNAK-YLEMGAMVGIDAASDGLARAQRMGVT-------------TTYAGVEGLIKL   66 (157)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHHCS-SEEEEEEECSCTTCHHHHHHHHTTCC-------------EESSHHHHHHHS
T ss_pred             CCCCcEEEEEcCcHHHHHHHHHHHhhCC-cceEEEEEecchhccchhhhhhcCCc-------------ccccceeeeeec
Confidence            345679999999999985 566665443 246664 467654 2 2223332211             111122221   


Q ss_pred             --ccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          197 --LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       197 --l~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                        ..+.|+||+|+|.....+-... ...++.+..+|+.+.
T Consensus        67 ~~~~~iDiVf~ATpag~h~~~~~~-~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          67 PEFADIDFVFDATSASAHVQNEAL-LRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGGGEEEEEECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred             ccccccCEEEEcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence              2468999999997543221111 122356888888774

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.20  E-value=0.00049  Score=53.62  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             hcCCCeEEEEcccHHH-HHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          124 LERTNKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG-~alA~~La~aG~~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      |.+.+||-|||.|-.| +++|..|.+.|  ++|+.+|+. ....+.+.+.|..            +..-.+. +-+.++|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~~~~~~L~~~Gi~------------v~~g~~~-~~i~~~d   69 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQAGAK------------IYIGHAE-EHIEGAS   69 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHTTCE------------EEESCCG-GGGTTCS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCChhhhHHHHCCCe------------EEECCcc-ccCCCCC
Confidence            4567899999999999 67799999999  999999976 3456677776542            1111233 3367889


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      +||..
T Consensus        70 ~vV~S   74 (96)
T d1p3da1          70 VVVVS   74 (96)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88874

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00095  Score=57.74  Aligned_cols=98  Identities=15%  Similarity=0.247  Sum_probs=61.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      |+||+|+|+ |..|.-+.+.|.+.- ..++..+..+...-+.+.+.+...  .....    + ...++++...++|++|+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP-~~ei~~l~s~~~aG~~i~~~~p~~--~~~~~----~-~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFPST--LENSI----L-SEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCGGG--CCCCB----C-BCCCHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCC-CceEEEeeccccCCCcccccCchh--hcccc----c-cccCHhHhccccceEEE
Confidence            689999996 999999999998864 367766543332222333222110  11111    1 11356666678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      |+|.....+....    . .+..||+++.-+-
T Consensus        73 a~p~~~s~~~~~~----~-~~~~VIDlSadfR   99 (176)
T d1vkna1          73 ALPAGASYDLVRE----L-KGVKIIDLGADFR   99 (176)
T ss_dssp             CCSTTHHHHHHTT----C-CSCEEEESSSTTT
T ss_pred             ccccHHHHHHHHh----h-ccceEEecCcccc
Confidence            9998766554432    2 4678899886543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00054  Score=58.55  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||.|||+|.++.+++..|.+.|. .+|++++|+.++.+.+.+.- ..            ....+..  ..++|+||-|
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~~-~~------------~~~~~~~--~~~~DliINa   80 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALY-GY------------AYINSLE--NQQADILVNV   80 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHH-TC------------EEESCCT--TCCCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHhh-hh------------hhhhccc--ccchhhheec
Confidence            4789999999999999999999883 48999999999988887642 11            1112221  3578999999


Q ss_pred             cCh
Q 014700          207 MPV  209 (420)
Q Consensus       207 Vp~  209 (420)
                      +|.
T Consensus        81 Tpi   83 (167)
T d1npya1          81 TSI   83 (167)
T ss_dssp             SST
T ss_pred             ccc
Confidence            983

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.0026  Score=52.48  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=67.7

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH-hccCCcEEEE
Q 014700          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (420)
Q Consensus       129 kI~IIG-aGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e-al~~aDiVIl  205 (420)
                      ||+|+| .|.||..++..+.+.. ++++.. +|+.+                             ++.+ ...++|+||=
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~-~~~l~~~~d~~~-----------------------------~~~~~~~~~~DvvID   50 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD-DLTLSAELDAGD-----------------------------PLSLLTDGNTEVVID   50 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST-TSEEEEEECTTC-----------------------------CTHHHHTTTCSEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCC-----------------------------chhhhccccCCEEEE
Confidence            799999 5999999999887764 366653 33321                             1111 1257899998


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCeEEEECcccHH
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~t~~~~se~l~~~lg~~~~~~~vl~GP~~a~  269 (420)
                      .+.+..+.+.++....   .+..+|.-+.|+..+..+.+.+.+.+  .   ....++..|++..
T Consensus        51 FS~p~~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~--~---~~ipil~apNfSl  106 (135)
T d1yl7a1          51 FTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVA--K---PNTSVLIAPNFTS  106 (135)
T ss_dssp             CCCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHS--C---TTCEEEECSCCGG
T ss_pred             cccHHHHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHh--c---CCCCEEEcCCccH
Confidence            8888888777776654   46677878889986543333332211  1   2356788888864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.11  E-value=0.00021  Score=62.24  Aligned_cols=105  Identities=15%  Similarity=0.156  Sum_probs=66.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCC---CCC----------CCceEE--eC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE---QKL----------PENVIA--TT  191 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~---~~l----------~~~i~a--~t  191 (420)
                      .-||.|||+|..|..-++....-|  .+|+++|.+.+..+++.+.+.....+..   ..+          ......  ..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            349999999999999888888877  8999999999888888876432111100   000          000000  01


Q ss_pred             CHHHhccCCcEEEEccCh--hhHHH-HHHHhhhcCCCCCeEEEec
Q 014700          192 DAKTALLGADYCLHAMPV--QFSSS-FLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       192 d~~eal~~aDiVIlaVp~--~~l~~-vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+.+.++++|+||-++-.  ..-.- +-+++...++++.+||+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            234557899999987642  11111 1245566688999999986

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00019  Score=55.42  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+||+|+|+|..|.++|+.|.+.|  ++|++||.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCc
Confidence            468999999999999999999998  9999999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0021  Score=54.44  Aligned_cols=93  Identities=11%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc--------c
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--------L  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal--------~  198 (420)
                      ..+|.|+|+|.+|...+..+...| ..+|++.++++++.+..++.|....+.+.         ..++.+..        .
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~---------~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGADLVLQIS---------KESPQEIARKVEGQLGC   96 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCSEEEECS---------SCCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhCCccccccc---------ccccccccccccccCCC
Confidence            458999999999999998888877 13799999999998888776643211100         01332221        3


Q ss_pred             CCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       199 ~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ++|+||-|+.....   ++.....++++..++.+
T Consensus        97 g~Dvvid~~G~~~~---~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          97 KPEVTIECTGAEAS---IQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             CCSEEEECSCCHHH---HHHHHHHSCTTCEEEEC
T ss_pred             CceEEEeccCCchh---HHHHHHHhcCCCEEEEE
Confidence            68999999997543   33334445556555544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.07  E-value=0.0027  Score=53.18  Aligned_cols=96  Identities=8%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      |||+|||+ |..|.-+.+.|.+.. + ..++..+..+..       .|..+.+.....   .+....+. +..+++|++|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~-------~gk~~~~~~~~~---~~~~~~~~-~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI-------GVPAPNFGKDAG---MLHDAFDI-ESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC-------SSBCCCSSSCCC---BCEETTCH-HHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc-------cccccccCCcce---eeecccch-hhhccccEEE
Confidence            79999996 999999998877532 1 125554443321       121111111111   11222343 3468999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+|.....++...+... ....+||+++.-
T Consensus        70 ~alp~~~s~~~~~~l~~~-g~~~~VIDlSsd   99 (147)
T d1mb4a1          70 TCQGGSYTEKVYPALRQA-GWKGYWIDAAST   99 (147)
T ss_dssp             ECSCHHHHHHHHHHHHHT-TCCSEEEESSST
T ss_pred             EecCchHHHHHhHHHHHc-CCceEEEeCCcc
Confidence            999998888888777553 234578888753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0007  Score=52.01  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             CCeEEEEcccHHHH-HHHHHHHhcCCCCeEEEEeCCH-HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGaGamG~-alA~~La~aG~~~~V~l~~r~~-~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||-|||.|-+|. ++|..|.+.|  ++|+..|+.+ +..++|.+.|....            .-.+.+ -+.++|+||
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G--~~VsGSD~~~~~~t~~L~~~Gi~i~------------~gh~~~-~i~~~d~vV   65 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNG--NDVYGSNIEETERTAYLRKLGIPIF------------VPHSAD-NWYDPDLVI   65 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCCEE------------SSCCTT-SCCCCSEEE
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCC--CeEEEEeCCCChhHHHHHHCCCeEE------------eeeccc-ccCCCCEEE
Confidence            37999999999997 7899999999  9999999875 55677888774321            111222 256789888


Q ss_pred             Ec
Q 014700          205 HA  206 (420)
Q Consensus       205 la  206 (420)
                      ..
T Consensus        66 ~S   67 (89)
T d1j6ua1          66 KT   67 (89)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.03  E-value=0.0007  Score=55.56  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=65.8

Q ss_pred             CCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      .++|+|||+    |.+|..+.+.|.+.| .++|+.+++..+.   +                .++....+++|.-...|+
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~---i----------------~G~~~y~sl~dlp~~vDl   67 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE---V----------------QGVKAYKSVKDIPDEIDL   67 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE---E----------------TTEECBSSTTSCSSCCSE
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccc---c----------------CCeEeecchhhcCCCCce
Confidence            579999997    899999999987654 4688888765321   1                134566677775557899


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      +++++|...+.++++++...=  -.-++.++.|+..
T Consensus        68 vvi~vp~~~~~~~~~~~~~~g--~~~~vi~s~Gf~e  101 (129)
T d2csua1          68 AIIVVPKRFVKDTLIQCGEKG--VKGVVIITAGFGE  101 (129)
T ss_dssp             EEECSCHHHHHHHHHHHHHHT--CCEEEECCCSSTT
T ss_pred             EEEecChHHhHHHHHHHHHcC--CCEEEEecccccc
Confidence            999999999999999886542  2235556778754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.002  Score=53.90  Aligned_cols=96  Identities=9%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG-~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      |+||||||+ |.+|.-+-..|.+.. + ..+++++..+...       +....+.....   ......+. +.+.++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~-------g~~~~~~~~~~---~~~~~~~~-~~~~~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG-------QAAPSFGGTTG---TLQDAFDL-EALKALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT-------SBCCGGGTCCC---BCEETTCH-HHHHTCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc-------cccccccCCce---eeecccch-hhhhcCcEE
Confidence            579999997 999999998776542 1 1356666655321       21111111110   11112233 346899999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      |+|+|...-..+...+... ..+.+||+.+.
T Consensus        70 F~a~~~~~s~~~~~~~~~~-g~~~~VID~Ss   99 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRES-GWQGYWIDAAS   99 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred             EEecCchHHHHhhHHHHhc-CCCeecccCCc
Confidence            9999998887777777652 23457888765

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.01  E-value=0.0012  Score=53.04  Aligned_cols=88  Identities=14%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             CeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEE
Q 014700          128 NKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (420)
Q Consensus       128 mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiV  203 (420)
                      ++|+|||+    |.+|..+...|.+.|  ++|..++++.+.   +                .++.+..++++.-...|++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g--~~V~pVnP~~~~---i----------------~G~~~y~sl~~lp~~~D~v   60 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDE---I----------------EGLKCYRSVRELPKDVDVI   60 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSE---E----------------TTEECBSSGGGSCTTCCEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCC--CEEEEEcccccc---c----------------cCccccccchhccccceEE
Confidence            68999995    789999999999998  888877654321   1                1345566787755667999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++++|...+.++++++...   +.-.+.++.|...+
T Consensus        61 vi~vp~~~~~~~l~~~~~~---g~k~v~~~~g~~~~   93 (116)
T d1y81a1          61 VFVVPPKVGLQVAKEAVEA---GFKKLWFQPGAESE   93 (116)
T ss_dssp             EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCCH
T ss_pred             EEEeCHHHHHHHHHHHHhc---CCceEEeccchhhH
Confidence            9999999999999887653   22234556676654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.97  E-value=0.00036  Score=61.70  Aligned_cols=37  Identities=38%  Similarity=0.533  Sum_probs=33.1

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |+..+||.|||+|.+|.+.|..|+++|  ++|++++|+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            345679999999999999999999999  8999999863

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.96  E-value=0.00061  Score=54.80  Aligned_cols=34  Identities=15%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+||.|||+|.+|.-+|..|++.|  .+|+++.|.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcc--ccceeeehhc
Confidence            579999999999999999999988  9999999853

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.95  E-value=0.003  Score=49.96  Aligned_cols=91  Identities=9%  Similarity=0.039  Sum_probs=57.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||.|||+|.+|..-+..|.+.|  .+|++++.... ....+.+.+. ....         .-.-+.+ .+.++++|+.
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~~~~~-i~~~---------~~~~~~~-dl~~~~lv~~   78 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEGM-LTLV---------EGPFDET-LLDSCWLAIA   78 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTTS-CEEE---------ESSCCGG-GGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHHhcCC-ceee---------ccCCCHH-HhCCCcEEee
Confidence            579999999999999999999998  89999986543 2223333221 1100         0001222 3778999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ++....+..-+.....   +..++|++.
T Consensus        79 at~d~~~n~~i~~~a~---~~~ilVNv~  103 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAE---SRRIFCNVV  103 (113)
T ss_dssp             CCSCHHHHHHHHHHHH---HTTCEEEET
T ss_pred             cCCCHHHHHHHHHHHH---HcCCEEEeC
Confidence            9987765433322222   234556543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.89  E-value=0.0018  Score=54.58  Aligned_cols=93  Identities=10%  Similarity=0.100  Sum_probs=60.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH---hc-----c
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---AL-----L  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e---al-----~  198 (420)
                      ..+|.|+|+|.+|...+..+...|  .+|+++++++++.+..++.|....+.....       ..+..+   .+     .
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~-------~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDPA-------KEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCTT-------TSCHHHHHHHHHHHSSS
T ss_pred             CCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCCcEEEecccc-------ccccchhhhhhhccccc
Confidence            468999999999999988888877  899999999999888887654221100000       011111   11     3


Q ss_pred             CCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEe
Q 014700          199 GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       199 ~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .+|+||-|+.... +...+    ..++++..++.+
T Consensus        98 g~D~vid~~g~~~~~~~a~----~~~~~~G~iv~~  128 (170)
T d1e3ja2          98 LPNVTIDCSGNEKCITIGI----NITRTGGTLMLV  128 (170)
T ss_dssp             CCSEEEECSCCHHHHHHHH----HHSCTTCEEEEC
T ss_pred             CCceeeecCCChHHHHHHH----HHHhcCCceEEE
Confidence            5899999998654 44433    445555555544

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.87  E-value=0.0032  Score=56.41  Aligned_cols=103  Identities=12%  Similarity=-0.006  Sum_probs=63.5

Q ss_pred             cCCCeEEEEcccHHHHHHH----HHHHhcCCCCeEE-EEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-
Q 014700          125 ERTNKVVVLGGGSFGTAMA----AHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-  198 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA----~~La~aG~~~~V~-l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-  198 (420)
                      ...+||||||+|.+|..++    ..+.+...+.+|. +++++.+..+.+.+... .         ......++.++.+. 
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~   83 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-L---------KHATGFDSLESFAQY   83 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-C---------TTCEEESCHHHHHHC
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc-c---------ccceeecchhhcccc
Confidence            3457999999998654433    3344332126766 78999988877766421 1         12345678888764 


Q ss_pred             -CCcEEEEccChhhHHHHHHHhhhc---CCCCCeEEEeccCCCc
Q 014700          199 -GADYCLHAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLEL  238 (420)
Q Consensus       199 -~aDiVIlaVp~~~l~~vl~~i~~~---l~~~~iVVs~snGi~~  238 (420)
                       +.|+|++|+|.....+........   ...++. |.+-|.+..
T Consensus        84 ~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~-V~~EKPla~  126 (237)
T d2nvwa1          84 KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRY-LYVEWALAA  126 (237)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCE-EEEESSSSS
T ss_pred             cccceeeccCCCcchhhHHHHHHHhcccccCCce-EEEeccccC
Confidence             579999999987766655544332   122333 345676654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.85  E-value=0.0015  Score=54.29  Aligned_cols=92  Identities=9%  Similarity=0.036  Sum_probs=68.1

Q ss_pred             hcCCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          124 LERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       124 ~~~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      +...++|+|||+    |.+|..+...|.+.|  ++|+.++...+   .+                .+..+..++++.-..
T Consensus        16 L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g--~~v~pVnP~~~---~i----------------~G~~~~~sl~dlp~~   74 (139)
T d2d59a1          16 LTRYKKIALVGASPKPERDANIVMKYLLEHG--YDVYPVNPKYE---EV----------------LGRKCYPSVLDIPDK   74 (139)
T ss_dssp             HHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCS---EE----------------TTEECBSSGGGCSSC
T ss_pred             HhcCCeEEEEeecCCCCCchHHHHHHHHHCC--CEEEEECCccc---cc----------------CCCcccccccccCcc
Confidence            334578999996    679999999999998  89888765421   11                134556678776567


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      .|++++++|...+.++++++...   +.-.+.++.|...+
T Consensus        75 iD~v~i~vp~~~~~~~~~e~~~~---g~k~v~~~~G~~~e  111 (139)
T d2d59a1          75 IEVVDLFVKPKLTMEYVEQAIKK---GAKVVWFQYNTYNR  111 (139)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHH---TCSEEEECTTCCCH
T ss_pred             ceEEEEEeCHHHHHHHHHHHHHh---CCCEEEEeccccCH
Confidence            89999999999999999988664   23345567776654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.83  E-value=0.002  Score=55.44  Aligned_cols=102  Identities=14%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCH--HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~--~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDi  202 (420)
                      ||||+|||+ |..|.-+.+.|.+.- .+++... .+..  ..-+.+...+..   +.+. .........+......++|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP-~~ei~~l~~~s~~~~aGk~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHP-HMTITALTVSAQSNDAGKLISDLHPQ---LKGI-VDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTCBHHHHCGG---GTTT-CCCBEEEESCGGGTCTTCCE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCC-CCceEeeEeecccccccccccccccc---cccc-cccccccchhhhhhhcccce
Confidence            689999995 999999999999863 2566533 3221  111122221111   1111 11123344455555678999


Q ss_pred             EEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       203 VIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +|+|+|.....+....+..   .+..||+++.-.
T Consensus        76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSadf  106 (179)
T d2g17a1          76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSGAF  106 (179)
T ss_dssp             EEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred             eeccccchhHHHHhhhhhh---cCceeecccccc
Confidence            9999998877776666544   577888887544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.81  E-value=0.00049  Score=57.59  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .|||+|||+ |..|.-+.+.|.+..+ ..++..+..+...       |....+.     ...+.......+...++|++|
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~-------Gk~i~~~-----~~~~~~~~~~~~~~~~~d~vf   69 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-------GQRMGFA-----ESSLRVGDVDSFDFSSVGLAF   69 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-------TCEEEET-----TEEEECEEGGGCCGGGCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC-------Ccceeec-----cccchhccchhhhhccceEEE
Confidence            489999997 9999999999986542 2477766544321       2111100     011111111123357899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +|+|.....+....+..   .+..||+.+.-
T Consensus        70 ~a~p~~~s~~~~~~~~~---~g~~VID~Ss~   97 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARA---AGCSVIDLSGA   97 (144)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCEEEETTCT
T ss_pred             ecCCcchhhhhcccccc---CCceEEeechh
Confidence            99998877776666543   57888887753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.78  E-value=0.0017  Score=57.27  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc-CCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~-~aDiVIl  205 (420)
                      .++|+|-|.|++|..+|..|.+.|  ..|+++|.+.+.+......+.              ... ++++.+. +||+++-
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~d~~~~~~~~~~g~--------------~~~-~~~~~~~~~~DI~iP   89 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTERVAHAVALGH--------------TAV-ALEDVLSTPCDVFAP   89 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EEC-CGGGGGGCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEecchHHHHHHHHhhcc--------------ccc-Cccccccccceeeec
Confidence            679999999999999999999998  899999999988777665432              111 3445443 7999886


Q ss_pred             ccCh-hhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~-~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |--. .-..+.++.|    + -.+|+...|+
T Consensus        90 cA~~~~I~~~~a~~i----~-ak~i~e~AN~  115 (201)
T d1c1da1          90 CAMGGVITTEVARTL----D-CSVVAGAANN  115 (201)
T ss_dssp             CSCSCCBCHHHHHHC----C-CSEECCSCTT
T ss_pred             ccccccccHHHHhhh----h-hheeeccCCC
Confidence            6433 3344444444    2 3466666664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.72  E-value=0.00054  Score=64.33  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=34.8

Q ss_pred             hcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       124 ~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |+.++||+|||+|.-|.++|..|++.|..++|+++.++.+
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5678999999999999999999988764479999998763

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.72  E-value=0.0013  Score=62.18  Aligned_cols=94  Identities=9%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +..+++|||+|..+..-...|...-.-.+|.+|+|+++..+.+.+.....          .+.+..++++++.+||+|+.
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~----------~~~~~~~~~~a~~~aDiV~t  193 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR----------GISASVQPAEEASRCDVLVT  193 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT----------TCCEEECCHHHHTSSSEEEE
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc----------CCccccchhhhhccccEEEE
Confidence            45689999999999999998876421258999999999887765532110          12233355677899999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      |+++..-  +++  ...+++++.|..+.
T Consensus       194 aT~s~~P--~~~--~~~l~~G~hv~~iG  217 (320)
T d1omoa_         194 TTPSRKP--VVK--AEWVEEGTHINAIG  217 (320)
T ss_dssp             CCCCSSC--CBC--GGGCCTTCEEEECS
T ss_pred             eccCccc--ccc--hhhcCCCCeEeecC
Confidence            9996431  111  34678888887664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.58  E-value=0.00069  Score=60.20  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |||+|||+|.-|.+.|..|+++|  ++|+++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            79999999999999999999999  9999998754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0036  Score=51.53  Aligned_cols=92  Identities=14%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             CCCeEEEEcc----cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGa----GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      +.++|+|||+    +.+|..+...|.+.|  +++..+..++.. +.+                .+..+..++.+.-...|
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g--~~~~~v~~~~~~-~~i----------------~g~~~~~~l~~i~~~iD   72 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG--YRVLPVNPRFQG-EEL----------------FGEEAVASLLDLKEPVD   72 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTT--CEEEEECGGGTT-SEE----------------TTEECBSSGGGCCSCCS
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCC--CCceEEEecccc-cee----------------eceecccchhhccCCCc
Confidence            4578999997    899999999999988  899988765420 000                13455567777556689


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++++++|+..+.++++++... ....  +.++.|...+
T Consensus        73 ~v~v~~p~~~v~~~v~~~~~~-g~k~--i~~q~G~~~~  107 (136)
T d1iuka_          73 ILDVFRPPSALMDHLPEVLAL-RPGL--VWLQSGIRHP  107 (136)
T ss_dssp             EEEECSCHHHHTTTHHHHHHH-CCSC--EEECTTCCCH
T ss_pred             eEEEeccHHHHHHHHHHHHhh-CCCe--EEEecCccCH
Confidence            999999999988888887654 2233  3457787654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.011  Score=48.87  Aligned_cols=75  Identities=12%  Similarity=0.042  Sum_probs=48.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC--CCCCC-CCCCCCCceEEeCCHHHh-ccCCcEEE
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYF-PEQKLPENVIATTDAKTA-LLGADYCL  204 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~--~~~~l-~~~~l~~~i~a~td~~ea-l~~aDiVI  204 (420)
                      .|.|+|.|.+|..++..|.+.|  ++|++++.+++......+...  ....+ ++..-+      ..++++ +.+||.+|
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~------~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDS------SVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSH------HHHHHHTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcC--CCEEEEeccchhHHHHHHHhhcCCcEEEEccCcch------HHHHHhccccCCEEE
Confidence            5999999999999999999988  899999998765433322211  11111 110000      012222 56899999


Q ss_pred             EccChhh
Q 014700          205 HAMPVQF  211 (420)
Q Consensus       205 laVp~~~  211 (420)
                      ++++.+.
T Consensus        77 ~~~~~d~   83 (153)
T d1id1a_          77 ALSDNDA   83 (153)
T ss_dssp             ECSSCHH
T ss_pred             EccccHH
Confidence            9999754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.32  E-value=0.0014  Score=58.27  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+||+|||+|.-|.++|..|+++|  ++|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            3579999999999999999999999  9999999864

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.16  E-value=0.0051  Score=53.00  Aligned_cols=89  Identities=15%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHHhcCCCCCCCCCC---C-CCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRYFPEQK---L-PENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r~~~-~~~~i~~~g~~~~~l~~~~---l-~~~i~a~td~~eal~~a  200 (420)
                      |-||+|.|.|.||..+.+.|.+.. +.+|..+ ++.+. ....+...+... +.....   + ...+.+..+..+...++
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~-dievVaInd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~g~~~~~~~~v   78 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIRI-YVPQQSIKKFEESGIPVAGTVEDLIKTS   78 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCCE-ECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCC-CCEEEEEECCCCcHHHHHhcccCcce-eccCccceeccccceecCCchhhhhhcC
Confidence            459999999999999999999875 4677655 44432 223333222110 000000   0 11223334566767789


Q ss_pred             cEEEEccChhhHHHHHH
Q 014700          201 DYCLHAMPVQFSSSFLE  217 (420)
Q Consensus       201 DiVIlaVp~~~l~~vl~  217 (420)
                      |+||-|+|.....+-++
T Consensus        79 DiViecTG~f~~~e~a~   95 (178)
T d1b7go1          79 DIVVDTTPNGVGAQYKP   95 (178)
T ss_dssp             SEEEECCSTTHHHHHHH
T ss_pred             CEEEECCCCcCCHHHHH
Confidence            99999999765444333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.16  E-value=0.002  Score=54.87  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~  163 (420)
                      .+||+|||+|..|...|..|++.|  + +|+++++.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLG--YSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCc
Confidence            579999999999999999999998  6 6999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.14  E-value=0.002  Score=58.27  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +.+||+|||+|..|.+.|..|+++|  ++|+++++++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            3579999999999999999999999  9999999765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.11  E-value=0.0035  Score=53.61  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=52.0

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .++|.|||+|.++.+++..|.+.|   +|++++|+.++++.+.+.-.. .+...  ....+ ...+++....++|++|-|
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~dliIn~   90 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KLNKK--FGEEV-KFSGLDVDLDGVDIIINA   90 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HHTCC--HHHHE-EEECTTCCCTTCCEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHH-hhchh--hhhhh-hhhhhhhccchhhhhccC
Confidence            579999999999999999997654   899999999988776542100 00000  00011 123444556789999999


Q ss_pred             cChh
Q 014700          207 MPVQ  210 (420)
Q Consensus       207 Vp~~  210 (420)
                      +|..
T Consensus        91 tp~g   94 (177)
T d1nvta1          91 TPIG   94 (177)
T ss_dssp             SCTT
T ss_pred             Cccc
Confidence            9953

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0024  Score=55.22  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=32.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ..+||+|||+|.-|...|..|++.|  |+|++++++++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCc
Confidence            3579999999999999999999999  99999998763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.07  E-value=0.0025  Score=55.16  Aligned_cols=42  Identities=29%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .++|.|.| .|.+|..+|..|++.|  .+|++.+|+++..+.+.+
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHH
Confidence            57899999 5999999999999999  899999999988766654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.05  E-value=0.0022  Score=56.58  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |||+|||+|.-|.+.|..|+++|  ++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            79999999999999999999999  9999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0066  Score=51.74  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=38.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHHhcC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~-~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ..+|.|+|+|.+|......+...|  . +|++.++++++.+.+++.|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCEEEEECCCccchhheecccccc--cccccccccccccccccccccc
Confidence            468999999999998888887777  5 79999999999888877653

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.00054  Score=58.50  Aligned_cols=93  Identities=14%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ..+||+|||+|.||...+..|.+......+.+++.....       ....        ..... ..+.++++.  +.|+|
T Consensus         6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-------~~~~--------~~~~~-~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-------ELGS--------LDEVR-QISLEDALRSQEIDVA   69 (172)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-------CCCE--------ETTEE-BCCHHHHHHCSSEEEE
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-------HHHH--------hhccC-cCCHHHHHhCCCcchh
Confidence            357999999999999998888653211234444432210       0000        00112 236777654  57999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEEEeccCCCc
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~~  238 (420)
                      ++|+|.....+++......   +..| .+-|.+..
T Consensus        70 ~I~tp~~~H~~~~~~al~~---gk~V-~~EKP~a~  100 (172)
T d1lc0a1          70 YICSESSSHEDYIRQFLQA---GKHV-LVEYPMTL  100 (172)
T ss_dssp             EECSCGGGHHHHHHHHHHT---TCEE-EEESCSCS
T ss_pred             hhccccccccccccccccc---chhh-hcCCCccc
Confidence            9999998877777665543   4433 34565543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0011  Score=57.22  Aligned_cols=100  Identities=21%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH---h-cCCCCCCCCCCCCCceEEeCC---HHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE---K-HCNCRYFPEQKLPENVIATTD---AKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~---~-g~~~~~l~~~~l~~~i~a~td---~~eal~~  199 (420)
                      .++|.|||+|.+|.+++..|.+.|. .++++++|+++..+++..   . +.+..      ....+.-..+   ..+.+.+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~   90 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTD------CVVTVTDLADQQAFAEALAS   90 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHSS------CEEEEEETTCHHHHHHHHHT
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhcC------cceEeeecccccchhhhhcc
Confidence            5799999999999999999999873 689999998765443321   1 00000      0000111122   3344678


Q ss_pred             CcEEEEccChhhHHHHHHHh---hhcCCCCCeEEEec
Q 014700          200 ADYCLHAMPVQFSSSFLEGI---SDYVDPGLPFISLS  233 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i---~~~l~~~~iVVs~s  233 (420)
                      +|+||-|+|.......-+.+   ...++++.+++.+.
T Consensus        91 ~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          91 ADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             CSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             cceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            99999999953211000111   23456677777765

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.93  E-value=0.0023  Score=52.34  Aligned_cols=66  Identities=27%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc--c---cchhhhhhcccCCCCcccccccc
Q 014700          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--G---TGDIMLTCFVNLSRNRTVGVRLG  392 (420)
Q Consensus       327 G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~--g---~gdl~~t~~~~~sRn~~~G~~l~  392 (420)
                      |....+|+.+|.+......++.|...+|++.|++++++++..  +   ..-+...+....+++|.+||.+.
T Consensus         3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~   73 (133)
T d1vpda1           3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRID   73 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHH
Confidence            445567788899999999999999999999999999999842  2   22233334456789999988653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.90  E-value=0.028  Score=50.46  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             CeEEEE-cc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~II-Ga-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +||++| |+ +-+|.++|..|++.|  ++|.+.+|+++.++++.+.                     +++  .+.+++.+
T Consensus         1 KKValITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------i~~--~g~~~~~~   55 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASE---------------------INQ--AGGHAVAV   55 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            578666 64 679999999999999  8999999999877766542                     111  12233333


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+   ....++.+++++...+.+=.++|+..
T Consensus        56 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          56 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCccEEEecc
Confidence            22   23557777888776665445666654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.81  E-value=0.00066  Score=59.63  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKK  150 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG  150 (420)
                      |||+|||+|.+|.+.|..|+++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G   23 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERY   23 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC
Confidence            79999999999999999999998

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.79  E-value=0.0081  Score=48.30  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-ccCCcEEEEcc
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHAM  207 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-l~~aDiVIlaV  207 (420)
                      -|.|+|.|.+|..++..|.  +  ++|.+++.+++..+.+...+.... .++..-+      ..++++ +.+|+.+++++
T Consensus         2 HivI~G~g~~g~~l~~~L~--~--~~i~vi~~d~~~~~~~~~~~~~~i-~Gd~~~~------~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--G--SEVFVLAEDENVRKKVLRSGANFV-HGDPTRV------SDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--G--GGEEEEESCTTHHHHHHHTTCEEE-ESCTTSH------HHHHHTTCTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHc--C--CCCEEEEcchHHHHHHHhcCcccc-ccccCCH------HHHHHhhhhcCcEEEEec
Confidence            4789999999999999994  4  678899999998888877653211 1111100      012222 56899999999


Q ss_pred             ChhhHHHHHHHhhhcCCCCCeEEEecc
Q 014700          208 PVQFSSSFLEGISDYVDPGLPFISLSK  234 (420)
Q Consensus       208 p~~~l~~vl~~i~~~l~~~~iVVs~sn  234 (420)
                      +.+...-.+-.....+.++..++...+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            976533333222233344544544443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.77  E-value=0.0071  Score=51.51  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh----c--cCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----L--LGA  200 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea----l--~~a  200 (420)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|......+     .    ..+..+.    .  ..+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~~~i~~-----~----~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGATDILNY-----K----NGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCSEEECG-----G----GSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhhCccccccc-----c----chhHHHHHHHHhhccCc
Confidence            4689999999999988888877762 479999999988888777663211000     0    0122221    1  248


Q ss_pred             cEEEEccChhh-HHHHHHHhh
Q 014700          201 DYCLHAMPVQF-SSSFLEGIS  220 (420)
Q Consensus       201 DiVIlaVp~~~-l~~vl~~i~  220 (420)
                      |+||-|+.... ++..++-+.
T Consensus        98 D~vid~~g~~~~~~~a~~~~~  118 (174)
T d1jqba2          98 DRVIMAGGGSETLSQAVKMVK  118 (174)
T ss_dssp             EEEEECSSCTTHHHHHHHHEE
T ss_pred             ceEEEccCCHHHHHHHHHHHh
Confidence            99999998654 455454443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.0089  Score=49.96  Aligned_cols=46  Identities=17%  Similarity=0.103  Sum_probs=39.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ...+|.|+|+|.+|...+..+...|  .+|+..++++++.+..++.|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga   72 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGA   72 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCc
Confidence            3568999999999999888777777  899999999998888877664

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.76  E-value=0.015  Score=49.09  Aligned_cols=84  Identities=11%  Similarity=0.073  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~a  200 (420)
                      ...+|.|+|+|.+|...+..+...|. ..|.+.++++++.+..++.|....+.+.         ..+..+.+     ...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~~~i~~~---------~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGATHVINSK---------TQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCeEEEeCC---------CcCHHHHHHHHcCCCC
Confidence            35689999999999999998888772 4666788999888888876642111000         01233322     247


Q ss_pred             cEEEEccChhh-HHHHHHHh
Q 014700          201 DYCLHAMPVQF-SSSFLEGI  219 (420)
Q Consensus       201 DiVIlaVp~~~-l~~vl~~i  219 (420)
                      |+||-|+.... ++..++-+
T Consensus        98 D~vid~~G~~~~~~~~~~~~  117 (174)
T d1f8fa2          98 NFALESTGSPEILKQGVDAL  117 (174)
T ss_dssp             EEEEECSCCHHHHHHHHHTE
T ss_pred             cEEEEcCCcHHHHHHHHhcc
Confidence            99999998654 44434333

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.73  E-value=0.0047  Score=53.28  Aligned_cols=98  Identities=18%  Similarity=0.340  Sum_probs=56.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+||+|||+ |..|.-+.+.|.+.- ..++.....+...-+.+.+....   +....++.   .....++...++|++|+
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP-~~ei~~l~S~~~aG~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHP-QFRIKVMTADRKAGEQFGSVFPH---LITQDLPN---LVAVKDADFSNVDAVFC   77 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECSTTTTSCHHHHCGG---GTTSCCCC---CBCGGGCCGGGCSEEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCC-CceEEEEeccccCCCcccccccc---cccccccc---chhhhhhhhcccceeee
Confidence            569999996 999999999999863 35766554332222222222111   11111110   11122333568999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      |+|...-.++...+.    +...+|....+
T Consensus        78 alp~~~s~~~~~~l~----~~~~~v~~~~~  103 (183)
T d2cvoa1          78 CLPHGTTQEIIKGLP----QELKIVDLSAD  103 (183)
T ss_dssp             CCSSSHHHHHHHTSC----SSCEEEECSST
T ss_pred             ccccchHHHHHHHHH----hcCcccccchh
Confidence            999887776665443    33445554433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.71  E-value=0.0057  Score=48.44  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.-+|..|++.|  .+|+++.|.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccc--cEEEEEEecc
Confidence            479999999999999999999998  9999998775

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.71  E-value=0.0042  Score=57.99  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+||+|||+|.-|.+.|..|+++|  ++|++++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCC
Confidence            579999999999999999999998  99999998763

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.71  E-value=0.0072  Score=51.94  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=47.1

Q ss_pred             CCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      +|++|.|.| .|.+|.+++..|.++|..+.|+...|+++....+..   ....+.+.     +.-..+..++++++|.||
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~---~~~~~~~d-----~~~~~~~~~~~~~~d~vi   73 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG---EADVFIGD-----ITDADSINPAFQGIDALV   73 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC---CTTEEECC-----TTSHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC---CcEEEEee-----eccccccccccccceeeE
Confidence            578999999 599999999999999822235556788865544332   11111000     000113456678899999


Q ss_pred             EccC
Q 014700          205 HAMP  208 (420)
Q Consensus       205 laVp  208 (420)
                      .+..
T Consensus        74 ~~a~   77 (252)
T d2q46a1          74 ILTS   77 (252)
T ss_dssp             ECCC
T ss_pred             EEEe
Confidence            7753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.69  E-value=0.0041  Score=54.56  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=31.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .||+|||+|.-|.+.|..|.+++.+++|+++++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            599999999999999999988754589999998763

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0067  Score=48.16  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=36.3

Q ss_pred             cchhhcCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       120 ~~~~~~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ++.+.....||+|||+|..|.-||....+-|  ++|.++|.+++
T Consensus         4 ~~~~~~~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~   45 (111)
T d1kjqa2           4 GTALRPAATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD   45 (111)
T ss_dssp             CCTTSTTCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred             CCCCCCCCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence            4555666789999999999999999998888  99999998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.65  E-value=0.0048  Score=57.70  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=41.9

Q ss_pred             ccchhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          119 AKTDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       119 ~~~~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ++..+++..++|.|.|+ |-+|+.++..|.++|  ++|....|+....+.+..
T Consensus         3 ~~~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G--~~V~~~vR~~~~~~~~~~   53 (342)
T d1y1pa1           3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQK   53 (342)
T ss_dssp             STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCCCcCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCchhHHHHHH
Confidence            44567778899999995 999999999999998  999999998876665543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.0058  Score=49.01  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|+.|||+|.+|.=+|..|++.|  ++|+++.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhC--cceeEEEecc
Confidence            479999999999999999999998  9999998765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.53  E-value=0.0041  Score=56.29  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      +|.|||+|..|.++|..|++.|  ++|+++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            7999999999999999999999  89999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.51  E-value=0.0043  Score=55.59  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .|.|||+|.+|.+.|..|+++|  ++|+++++++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            4999999999999999999999  8999999864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.42  E-value=0.0035  Score=50.89  Aligned_cols=80  Identities=11%  Similarity=0.065  Sum_probs=51.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l-~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .+|.|+|||.+|.+++..+.... ++++.. +|-+++.      .|.   .+.+.    .+...+++++.. +..++.++
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~~k------~G~---~I~Gi----~V~~~~~l~~~~~~~i~iai~   69 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEK------VGR---PVRGG----VIEHVDLLPQRVPGRIEIALL   69 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTT------TTC---EETTE----EEEEGGGHHHHSTTTCCEEEE
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCchHh------cCC---EECCE----EEecHHHHHHHHhhcccEEEE
Confidence            38999999999999998875442 377774 4665532      111   11111    122234555543 35789999


Q ss_pred             ccChhhHHHHHHHhhh
Q 014700          206 AMPVQFSSSFLEGISD  221 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~  221 (420)
                      ++|+...+++++.+..
T Consensus        70 ~i~~~~~~~I~d~l~~   85 (126)
T d2dt5a2          70 TVPREAAQKAADLLVA   85 (126)
T ss_dssp             CSCHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHH
Confidence            9999888888877654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.39  E-value=0.0089  Score=47.87  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=31.9

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..++|+|||+|.+|.-+|..|++.|  .+|+++.+.+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhccc--ceEEEEeecc
Confidence            3579999999999999999999998  9999998775

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0075  Score=47.80  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+||.|||+|.+|.-+|..|++.|  ++|+++.|.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccc--cEEEEEeecc
Confidence            479999999999999999999998  8999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.34  E-value=0.0076  Score=51.70  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |||.|||+|..|.-+|..|.+.+.+.+|++++|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999999999875447899998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.028  Score=47.01  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=54.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH---HhccCCcE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGADY  202 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~---eal~~aDi  202 (420)
                      ...+|.|+|+|.+|...+..+...|  .++++.++++++.+.+++.|....           ....+..   ...+..|+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~lGad~~-----------i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGADEV-----------VNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCSEE-----------EETTCHHHHHTTTTCEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhccCCcEE-----------EECchhhHHHHhcCCCce
Confidence            3578999999999998888877777  888899999888777777664211           1111222   22356899


Q ss_pred             EEEccChhh-HHHHHH
Q 014700          203 CLHAMPVQF-SSSFLE  217 (420)
Q Consensus       203 VIlaVp~~~-l~~vl~  217 (420)
                      +|-++.... +...++
T Consensus        97 vid~~g~~~~~~~~~~  112 (168)
T d1uufa2          97 ILNTVAAPHNLDDFTT  112 (168)
T ss_dssp             EEECCSSCCCHHHHHT
T ss_pred             eeeeeecchhHHHHHH
Confidence            999998643 554443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.30  E-value=0.013  Score=48.76  Aligned_cols=45  Identities=16%  Similarity=0.102  Sum_probs=38.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~Ga   72 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGA   72 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC
T ss_pred             CCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhcCc
Confidence            468999999999998888887777  899999999999888887664

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.28  E-value=0.025  Score=50.49  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-cCCcEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-~~aDiVIl  205 (420)
                      .++|+|-|.|++|..+|..|.+.|  ..|++.+.+...++.+.....             .... ++++.+ .+||+++-
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~G--akvv~~d~~~~~~~~~~~~~g-------------~~~~-~~~~~~~~~cDIl~P  102 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEEG-------------ADAV-APNAIYGVTCDIFAP  102 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHC-------------CEEC-CGGGTTTCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEeecccHHHHHHHHHhcC-------------Cccc-CCcccccccccEecc
Confidence            679999999999999999999998  899999999888777665321             1111 333433 47999998


Q ss_pred             ccChhh-HHHHHHHhhhcCCCCCeEEEec-cCC
Q 014700          206 AMPVQF-SSSFLEGISDYVDPGLPFISLS-KGL  236 (420)
Q Consensus       206 aVp~~~-l~~vl~~i~~~l~~~~iVVs~s-nGi  236 (420)
                      |--... .++.+.+|    + -++|+... |++
T Consensus       103 cA~~~~I~~~~~~~l----~-ak~Ive~ANn~~  130 (230)
T d1leha1         103 CALGAVLNDFTIPQL----K-AKVIAGSADNQL  130 (230)
T ss_dssp             CSCSCCBSTTHHHHC----C-CSEECCSCSCCB
T ss_pred             cccccccChHHhhcc----C-ccEEEecccCCC
Confidence            765433 33334443    2 34677667 444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.011  Score=49.77  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH-HhccCCcEEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~-eal~~aDiVI  204 (420)
                      ...+|.|+|+|.+|...+..+...|  .+|+++++++++.+..++.|....+... .       ..+.. ......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa~~~i~~~-~-------~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGADHYIATL-E-------EGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCSEEEEGG-G-------TSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCCcEEeecc-c-------hHHHHHhhhcccceEE
Confidence            3578999999999998887777777  8999999999888888876643110000 0       01222 2234578888


Q ss_pred             EccCh
Q 014700          205 HAMPV  209 (420)
Q Consensus       205 laVp~  209 (420)
                      .++..
T Consensus        97 ~~~~~  101 (168)
T d1piwa2          97 VCASS  101 (168)
T ss_dssp             ECCSC
T ss_pred             EEecC
Confidence            88764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.22  E-value=0.0093  Score=49.84  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~-~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      -||+|||+ |..|.-+.+.|.+..+ ..++.++..+..       .|....+.     ..........++...+.|++++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-------~G~~~~~~-----~~~~~~~~~~~~~~~~~d~~f~   69 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-------AGKSLKFK-----DQDITIEETTETAFEGVDIALF   69 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-------TTCEEEET-----TEEEEEEECCTTTTTTCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-------cccccccc-----CCcccccccchhhhhhhhhhhh
Confidence            38999997 9999999999987641 134444543321       12111100     0111222223344678999999


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snG  235 (420)
                      +.|.........+...   .+..||+++.-
T Consensus        70 ~~~~~~s~~~~~~~~~---~~~~VIDlSsd   96 (154)
T d2gz1a1          70 SAGSSTSAKYAPYAVK---AGVVVVDNTSY   96 (154)
T ss_dssp             CSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             ccCccchhhHHhhhcc---ccceehhcChh
Confidence            9998776665554443   67889998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.22  E-value=0.0067  Score=51.80  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=29.9

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .||+|||+|.-|.+.|..|+++|. ++|+++++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            379999999999999999999982 3799998865

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.015  Score=49.62  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             CCCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||-+ .+|.++|..|++.|  ..|++++....                            ++.+.++++|++|
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~g--atVt~~~~~t~----------------------------~l~~~~~~aDivi   87 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKTA----------------------------HLDEEVNKGDILV   87 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTCS----------------------------SHHHHHTTCSEEE
T ss_pred             ccceEEEEecCCccchHHHHHHHhcc--CceEEEecccc----------------------------cHHHHHhhccchh
Confidence            47899999975 59999999999998  89998875321                            4456678999999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .++....+-     -..+++++.+||++
T Consensus        88 ~a~G~~~~i-----~~~~vk~g~iviDv  110 (170)
T d1a4ia1          88 VATGQPEMV-----KGEWIKPGAIVIDC  110 (170)
T ss_dssp             ECCCCTTCB-----CGGGSCTTCEEEEC
T ss_pred             hcccccccc-----ccccccCCCeEecc
Confidence            999865431     14678899999987

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.009  Score=47.90  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .++|+|||+|.+|.=+|..|++.|  .+|+++.|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcC--CeEEEEEec
Confidence            468999999999999999999998  899999876

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.19  E-value=0.0095  Score=49.17  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+||.|||+|..|..+|..|.+.+.+.+|+++++++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            479999999999999999999987446899998765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.017  Score=47.65  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .++|.|||+|.+|..-+..|.++|  .+|++++.+
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            679999999999999999999999  899999653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.16  E-value=0.062  Score=48.78  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      +++.|-| +|.+|.++|..|+++|  ++|.+.+|+.+.+++..+
T Consensus        26 K~alITGas~GIG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~   67 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAE   67 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence            4455555 7999999999999999  999999999887665543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0097  Score=50.60  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             CCCeEEEEcccH-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       126 ~~mkI~IIGaGa-mG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      ..++|+|||-+. +|..+|..|.+.|  ..|+++....                            .++.+.+++||+||
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~g--atVt~~h~~t----------------------------~~l~~~~~~ADivI   85 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFT----------------------------KNLRHHVENADLLI   85 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSC----------------------------SCHHHHHHHCSEEE
T ss_pred             ccceEEEEeccccccHHHHHHHHHhh--cccccccccc----------------------------chhHHHHhhhhHhh
Confidence            468999999765 9999999999988  8999885432                            14556678899999


Q ss_pred             EccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       205 laVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .++....+-     -..++++++++|++
T Consensus        86 ~a~G~p~~i-----~~~~vk~g~vvIDv  108 (166)
T d1b0aa1          86 VAVGKPGFI-----PGDWIKEGAIVIDV  108 (166)
T ss_dssp             ECSCCTTCB-----CTTTSCTTCEEEEC
T ss_pred             hhccCcccc-----cccccCCCcEEEec
Confidence            999854321     14577899999886

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.16  E-value=0.011  Score=47.26  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.-+|..|++.|  ++|+++.+.+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~   63 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILD   63 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccc--eEEEEEEecC
Confidence            579999999999999999999998  9999997754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.13  E-value=0.008  Score=53.21  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ++|+|||+|.-|.++|..|+++|. ++|+++++.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            699999999999999999999983 4899999865

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.009  Score=53.07  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||+|||+|.-|.+.|..|+++|  ++|+++..++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            468999999999999999999999  9999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.08  E-value=0.0087  Score=52.88  Aligned_cols=37  Identities=16%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             cCCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       125 ~~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      +..+||.|||+|.-|.+.|..|++.|  ++|++++++++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccc
Confidence            45689999999999999999999998  99999998764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.011  Score=47.41  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.=+|..|++.|  .+|+++.|.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeecc
Confidence            479999999999999999999998  8999999863

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.99  E-value=0.013  Score=52.77  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=31.5

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++||.|+|+ |.+|..++..|.+.|  |+|++..|++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCC
Confidence            4679999995 999999999999998  9999999864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.99  E-value=0.058  Score=48.47  Aligned_cols=82  Identities=12%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+++.|.| ++.+|.++|..|++.|  ++|.+.+|+++.++++.+.-                     .+  ...++.++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~---------------------~~--~~~~~~~~   60 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIW---------------------RE--KGLNVEGS   60 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HH--TTCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------Hh--cCCCceEE
Confidence            57899999 5889999999999999  89999999998776665431                     11  11122222


Q ss_pred             c---cChhhHHHHHHHhhhcC-CCCCeEEEec
Q 014700          206 A---MPVQFSSSFLEGISDYV-DPGLPFISLS  233 (420)
Q Consensus       206 a---Vp~~~l~~vl~~i~~~l-~~~~iVVs~s  233 (420)
                      .   .....++++++++.... .+..++|+..
T Consensus        61 ~~D~s~~~~~~~~~~~~~~~~~g~idilinna   92 (258)
T d1ae1a_          61 VCDLLSRTERDKLMQTVAHVFDGKLNILVNNA   92 (258)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred             EeecCCHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence            2   23456777788777665 3455666544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.99  E-value=0.01  Score=47.33  Aligned_cols=34  Identities=24%  Similarity=0.562  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.=+|..|++.|  ++|+++.+.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhccc--ceEEEEeccc
Confidence            479999999999999999999998  9999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.98  E-value=0.013  Score=46.55  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.=+|..|++.|  .+|+++.+.+
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CceEEEEeec
Confidence            479999999999999999999998  9999998664

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.95  E-value=0.011  Score=48.02  Aligned_cols=65  Identities=17%  Similarity=0.041  Sum_probs=48.5

Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc--ccch---hhhhhc-ccCCCCccccccc
Q 014700          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGD---IMLTCF-VNLSRNRTVGVRL  391 (420)
Q Consensus       327 G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l~--g~gd---l~~t~~-~~~sRn~~~G~~l  391 (420)
                      |....+|+.+|........++.|+..+|++.|++++++++.-  +.|.   +...+. ....++|.++|.+
T Consensus         2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~   72 (132)
T d2cvza1           2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFAL   72 (132)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHH
Confidence            344566788999999999999999999999999999999842  3332   222222 3568888888865

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.89  E-value=0.027  Score=47.99  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHHhcCCCCCCCCCC----C-CCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRYFPEQK----L-PENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r~~~-~~~~i~~~g~~~~~l~~~~----l-~~~i~a~td~~eal~~  199 (420)
                      .+||+|.|.|.||..+.+.|.... +.+|..+ +..+. ....+.+.+... +.....    + ..++....+..+...+
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~-dieiVaINd~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPV-YAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCE-EESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCChHHHHHhhhcCcee-ecccccceeeecccCccccchhhhhhcc
Confidence            579999999999999999998764 3566543 55443 233344333211 110000    0 0112222356666778


Q ss_pred             CcEEEEccChhhHHHHHH
Q 014700          200 ADYCLHAMPVQFSSSFLE  217 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~  217 (420)
                      +|+||-|++..-..+-++
T Consensus        80 vDvViEcTG~f~~~~~~~   97 (172)
T d2czca2          80 VDIIVDATPGGIGAKNKP   97 (172)
T ss_dssp             CSEEEECCSTTHHHHHHH
T ss_pred             CCEEEECCCCCCCHHHHH
Confidence            999999999766544443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.87  E-value=0.014  Score=47.44  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=31.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..++|.|||+|.+|.-+|..|++.|  .+|+++.+.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhC--cceeeeeecc
Confidence            3579999999999999999999998  9999998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.85  E-value=0.056  Score=48.39  Aligned_cols=80  Identities=13%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          129 KVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       129 kI~II-G-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||++| | ++-+|.++|..|++.|  ++|.+.+|+++.++++.+.                     +.+  .+.++..+.
T Consensus         3 KValITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~---------------------l~~--~g~~~~~~~   57 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKE---------------------LRE--AGVEADGRT   57 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEEE
Confidence            56655 6 5789999999999999  8999999999877766542                     111  112333332


Q ss_pred             c---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 M---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 V---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .   ....++.+++++...+.+=.++|+..
T Consensus        58 ~Dvs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          58 CDVRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            2   24567788888776665445666654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.011  Score=50.18  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..--|.|||+|.-|.+.|..|+++|  ++|+++++++
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~   38 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQD   38 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCC
Confidence            3346899999999999999999999  9999999875

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.73  E-value=0.0082  Score=49.01  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             CCeEEEEcc----------cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGG----------GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGa----------GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      .+||+|+|+          +.-...++..|.+.|  .+|.+||..-..   ..-.+....++....-..+....+++.++
T Consensus        13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g--~~V~~~DP~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   87 (136)
T d1mv8a3          13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKG--YELRIFDRNVEY---ARVHGANKEYIESKIPHVSSLLVSDLDEV   87 (136)
T ss_dssp             CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTT--CEEEEECHHHHH---HTTSSSCHHHHHHTSHHHHTTBCSCHHHH
T ss_pred             CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhh--ccccccCCCCCH---HHHhhhhhhhhhhccccccceeehhhhhh
Confidence            468999997          457788999999988  899999863211   00000000000000000011234588999


Q ss_pred             ccCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       197 l~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      +.++|+||++++.....++.    ..+.++.+|+.+. |+-
T Consensus        88 i~~~D~ivi~t~h~~f~~l~----~~~~~~~~I~D~~-~~~  123 (136)
T d1mv8a3          88 VASSDVLVLGNGDELFVDLV----NKTPSGKKLVDLV-GFM  123 (136)
T ss_dssp             HHHCSEEEECSCCGGGHHHH----HSCCTTCEEEESS-SCC
T ss_pred             hhhceEEEEEeCCHHHHHHH----HHhcCCCEEEECC-CCC
Confidence            99999999999988766543    3344678888875 454

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.0095  Score=54.89  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |.+|.|||+|.-|.++|..|++.|  ++|+++++++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCC
Confidence            468999999999999999999998  8999999765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.032  Score=54.28  Aligned_cols=90  Identities=14%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC-CCCC----------------CCCCCC---CCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRY----------------FPEQKL---PEN  186 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~-~~~~----------------l~~~~l---~~~  186 (420)
                      ..||.|||+|.+|+.++..|+..|. .+++++|.+.=....++++-+ ...+                .|...+   ...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gv-g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTC-CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            4699999999999999999999995 489999876311111111100 0000                111111   111


Q ss_pred             eEEeCCHHHhccCCcEEEEccChhhHHHHHHHh
Q 014700          187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       187 i~a~td~~eal~~aDiVIlaVp~~~l~~vl~~i  219 (420)
                      +  .+..++.++++|+||.|+-....+..+.++
T Consensus       116 i--~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~  146 (426)
T d1yovb1         116 I--QDFNDTFYRQFHIIVCGLDSIIARRWINGM  146 (426)
T ss_dssp             G--GGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             c--cchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence            1  112245578999999999987766666554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.59  E-value=0.015  Score=45.73  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|+.|||+|..|.-+|..|++.|  ++|+++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeec
Confidence            479999999999999999999998  9999998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.094  Score=46.79  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=55.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-|+ +-+|.++|..|++.|  .+|.+.+|+.+..++..+.-.                     +......+..+
T Consensus         3 GKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~---------------------~~~~~~~~~~~   59 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALH---------------------EQFEPQKTLFI   59 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHT---------------------TTSCGGGEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---------------------HhcCCCcEEEE
Confidence            455666675 779999999999999  899999999987766654310                     00111223332


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      .+   ....++++++++...+.+=.++|+.. |+.
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA-g~~   93 (254)
T d2gdza1          60 QCDVADQQQLRDTFRKVVDHFGRLDILVNNA-GVN   93 (254)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             EeecCCHHHHHHHHHHHHHHcCCcCeecccc-ccc
Confidence            22   34557777777766554444666654 443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.1  Score=46.69  Aligned_cols=83  Identities=18%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +.+.|.| ++.+|.++|..|++.|  ++|.+++|+++.++++.+.                     +.+.-...+++.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~---------------------l~~~~~~~~~~~~~   67 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAE---------------------CKSAGYPGTLIPYR   67 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHTTCSSEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHhcCCCceEEEEE
Confidence            5677788 4899999999999999  8999999999887776543                     11111122333332


Q ss_pred             c---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 M---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 V---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +   ....++.+++.+...+.+=.++|+..
T Consensus        68 ~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          68 CDLSNEEDILSMFSAIRSQHSGVDICINNA   97 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence            2   24557777777766554444666654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.42  E-value=0.043  Score=45.98  Aligned_cols=92  Identities=13%  Similarity=0.056  Sum_probs=58.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCC-HHHhc-----cC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-AKTAL-----LG  199 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td-~~eal-----~~  199 (420)
                      ...+|.|+|+|.+|...+..+...| ...|++.++++++.+..++.|.....          ...++ .++..     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ga~~~i----------~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLGADHVV----------DARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTTCSEEE----------ETTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhcccceee----------cCcccHHHHHHHhhCCCC
Confidence            3468999999999999888887776 25788899999888888776532110          00011 12111     24


Q ss_pred             CcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+||-++.... ++..    ...++++-.++.+
T Consensus       101 ~d~vid~~g~~~~~~~a----~~~l~~~G~iv~~  130 (172)
T d1h2ba2         101 VNVAMDFVGSQATVDYT----PYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEEESSCCHHHHHHG----GGGEEEEEEEEEC
T ss_pred             ceEEEEecCcchHHHHH----HHHHhCCCEEEEE
Confidence            799999998654 4333    3344444444433

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.40  E-value=0.038  Score=46.94  Aligned_cols=99  Identities=19%  Similarity=0.287  Sum_probs=56.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHHhcCCCCCCCCCC----C-CCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRYFPEQK----L-PENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~-~r~~~-~~~~i~~~g~~~~~l~~~~----l-~~~i~a~td~~eal~~  199 (420)
                      |+||+|-|.|.+|..+.+.|...+ +.+|..+ ++.+. ....+.+.+... +.+...    . ..++.+..+..++..+
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~-di~vvaInd~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~g~~~~~~~~   78 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDL-YVAIPERVKLFEKAGIEVAGTVDDMLDE   78 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCE-EESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCC-CceEEEEecCCcHHHHHHHHhcCCce-EecccccceeecccCcccCCChhHhhcC
Confidence            579999999999999999998875 3666644 44432 223333322111 100000    0 0112222345566778


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEE
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      +|+||-|++..-..+-++   ++++.+.-+|
T Consensus        79 vDvViEcTG~f~~~~~~~---~hl~~G~K~v  106 (171)
T d1cf2o1          79 ADIVIDCTPEGIGAKNLK---MYKEKGIKAI  106 (171)
T ss_dssp             CSEEEECCSTTHHHHHHH---HHHHTTCEEE
T ss_pred             CCEEEEccCCCCCHHHHH---HHHHcCCCEE
Confidence            999999999765544333   3444454444

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.37  E-value=0.015  Score=52.77  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=29.7

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+|.|||+|.+|.+.|..|++.|. ++|+++++++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            379999999999999999999882 4799999863

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.097  Score=46.62  Aligned_cols=82  Identities=16%  Similarity=0.092  Sum_probs=55.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.|.|-|+ +.+|.++|..|+++|  .+|.+++|+++.++++.++                     ..+  .+.++..+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~---------------------~~~--~~~~~~~~   61 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAK---------------------CKG--LGAKVHTF   61 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            455666686 669999999999999  8999999999988777653                     111  12333333


Q ss_pred             ccC---hhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AMP---VQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aVp---~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .+-   .+.++.+++.+.....+-.++|+..
T Consensus        62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinna   92 (244)
T d1yb1a_          62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNA   92 (244)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCceeEeec
Confidence            322   3457777888776665555666544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.29  E-value=0.012  Score=51.27  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCC-----CCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~-----~~~V~l~~r~~~  163 (420)
                      +||+|||+|.-|.+.|..|+++|+     +++|++|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            599999999999999999999872     247999998763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.23  E-value=0.069  Score=47.72  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             eEEE-Ecc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          129 KVVV-LGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       129 kI~I-IGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      ||++ .|+ +-+|.++|..|++.|  ++|.+++|+++.++++.+.                     +++  .+.++..+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------l~~--~g~~~~~~~   65 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDE---------------------IKS--FGYESSGYA   65 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHH---------------------HHT--TTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEEE
Confidence            5554 485 789999999999999  8999999999887766543                     111  112233332


Q ss_pred             c---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 M---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 V---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .   ....++.+++++...+.+=.++|+..
T Consensus        66 ~Dvt~~~~v~~~~~~~~~~~g~iDilvnna   95 (251)
T d2c07a1          66 GDVSKKEEISEVINKILTEHKNVDILVNNA   95 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCceeeeecc
Confidence            2   34567778888766665444666643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.0064  Score=53.77  Aligned_cols=80  Identities=19%  Similarity=0.215  Sum_probs=48.5

Q ss_pred             hhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       122 ~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      +..+..+||.|.|+ |.+|..+...|.++|..++|++++|++.....-....... ...+      +.-..++.++++++
T Consensus         9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~-~~~D------~~~~~~~~~~~~~~   81 (232)
T d2bkaa1           9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQ-EVVD------FEKLDDYASAFQGH   81 (232)
T ss_dssp             HHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEE-EECC------GGGGGGGGGGGSSC
T ss_pred             HhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeee-eeec------cccccccccccccc
Confidence            43444579999995 9999999999999883358999998753211000000000 0000      00112455667899


Q ss_pred             cEEEEccC
Q 014700          201 DYCLHAMP  208 (420)
Q Consensus       201 DiVIlaVp  208 (420)
                      |++|.+.-
T Consensus        82 d~vi~~~~   89 (232)
T d2bkaa1          82 DVGFCCLG   89 (232)
T ss_dssp             SEEEECCC
T ss_pred             cccccccc
Confidence            99998863

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.08  E-value=0.02  Score=45.74  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+++.|||+|.+|.=+|..|++.|  .+|+++.|.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEcc
Confidence            579999999999999999999999  9999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.05  E-value=0.11  Score=46.65  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             eEEEE-c-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          129 KVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       129 kI~II-G-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      |+++| | ++.+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~   47 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQ   47 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            45444 6 5899999999999999  899999999987776654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.03  E-value=0.17  Score=45.14  Aligned_cols=84  Identities=12%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.+++..+.                     +.+...+..++.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~---------------------~~~~~~~~~~~~~   60 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAA---------------------VLETAPDAEVLTT   60 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHHCTTCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHhhCCCCeEEEE
Confidence            356667785 679999999999999  8999999999877665542                     1111223344444


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ..   ....++.+++++...+.+=.++|+..
T Consensus        61 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          61 VADVSDEAQVEAYVTATTERFGRIDGFFNNA   91 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            33   34567777777766555445666654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.018  Score=42.66  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +++|+|||.|..|.-|+..-.+-|  ++|.+++.++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCC
Confidence            478999999999999999998888  9999999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.00  E-value=0.05  Score=45.25  Aligned_cols=93  Identities=11%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc------cC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal------~~  199 (420)
                      ..+|.|+|+ |.+|...+..+...|. ..|+++++++++.+.+++.|........         ..|+.+.+      +.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~Ga~~~i~~~---------~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAGADYVINAS---------MQDPLAEIRRITESKG   97 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTTSC
T ss_pred             CCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcCCceeeccC---------CcCHHHHHHHHhhccc
Confidence            468999995 9999998888887772 5899999999988888876632110000         01222211      34


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|++|-|+.....   ++.....++++..++.+
T Consensus        98 ~d~vid~~g~~~~---~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          98 VDAVIDLNNSEKT---LSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEEEESCCCHHH---HTTGGGGEEEEEEEEEC
T ss_pred             chhhhcccccchH---HHhhhhhcccCCEEEEe
Confidence            7999999886543   23334444455444433

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.96  E-value=0.026  Score=44.38  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|+|||+|.+|.=+|..|++.|  .+|+++.+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccc
Confidence            479999999999999999999988  8999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.12  Score=43.01  Aligned_cols=82  Identities=15%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc------cC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal------~~  199 (420)
                      ..+|.|+|+ |.+|.+....+...|  .+|+..++++++.+.+++.|....+...         ..|..+.+      +.
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~~---------~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHR---------EVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETT---------STTHHHHHHHHHCTTC
T ss_pred             CCEEEEEeccccccccccccccccC--cccccccccccccccccccCcccccccc---------cccHHHHhhhhhccCC
Confidence            468999996 999998888777777  8999999998888887776542110000         01222221      24


Q ss_pred             CcEEEEccChhhHHHHHHHh
Q 014700          200 ADYCLHAMPVQFSSSFLEGI  219 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i  219 (420)
                      .|+||-++....++..++-+
T Consensus        98 ~d~v~d~~g~~~~~~~~~~l  117 (174)
T d1yb5a2          98 IDIIIEMLANVNLSKDLSLL  117 (174)
T ss_dssp             EEEEEESCHHHHHHHHHHHE
T ss_pred             ceEEeecccHHHHHHHHhcc
Confidence            78888888765555544433

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.74  E-value=0.089  Score=45.21  Aligned_cols=47  Identities=23%  Similarity=0.157  Sum_probs=37.8

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~  173 (420)
                      ...+|.|+|+|.+|...+..+...| ...|++.++++++++..++.|.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~Ga   71 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGF   71 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhccc
Confidence            4569999999999987777766666 2588899999998888887664

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.73  E-value=0.024  Score=50.64  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      --|.|||+|.+|.+.|..|+++|  ++|+++++.+
T Consensus         4 yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~   36 (281)
T d2gf3a1           4 FDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFD   36 (281)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            46899999999999999999998  8999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.73  E-value=0.2  Score=44.54  Aligned_cols=85  Identities=15%  Similarity=0.202  Sum_probs=55.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++..++..+.                     +.+. .+.+++.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~---------------------l~~~-~g~~~~~~   60 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQK---------------------LTEK-YGVETMAF   60 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHH-HCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHHH-hCCcEEEE
Confidence            467788885 779999999999999  9999999998876654432                     1111 12333333


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      .+   ....++.+++++...+.+=.++|+.. |+
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA-G~   93 (251)
T d1vl8a_          61 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA-GI   93 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC-CC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC-CC
Confidence            32   24567777777766554444666644 44

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.2  Score=44.63  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=53.9

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+++.|-| ++-+|.++|..|++.|  ++|.+.+|+++.++++.++                     +++  .+.+++.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~---------------------l~~--~g~~~~~~   65 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDE---------------------IQQ--LGGQAFAC   65 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHH--cCCcEEEE
Confidence            45666666 4789999999999999  9999999999877766542                     111  12233333


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ..   ....++.+++++...+.+=.++|+..
T Consensus        66 ~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnA   96 (255)
T d1fmca_          66 RCDITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEeeeCC
Confidence            32   23557777777766555444666654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.69  E-value=0.017  Score=51.31  Aligned_cols=42  Identities=19%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      ....|.|||+|.-|...|..|+++|  ++|.++++.+..-..+.
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G~k~~   44 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKIL   44 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCceE
Confidence            3457999999999999999999998  89999999875444444

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.66  E-value=0.029  Score=45.37  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHcCCChhhhhhc
Q 014700          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL  367 (420)
Q Consensus       327 G~~~gl~lg~N~~~al~~~~~~E~~~lA~a~Gi~~~t~~~l  367 (420)
                      |....+|+.+|........++.|+..++++.|++++++++.
T Consensus         3 GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~ei   43 (134)
T d3cuma1           3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEI   43 (134)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            44556688899999999999999999999999999999984

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.56  E-value=0.1  Score=43.78  Aligned_cols=77  Identities=12%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~aD  201 (420)
                      ..+|.|+|+|.+|......+...| ...|+..++++++.+..++.|....+.+.  -.+     ...++..     ...|
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~--~~d-----~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIELGATECLNPK--DYD-----KPIYEVICEKTNGGVD   99 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHTTCSEEECGG--GCS-----SCHHHHHHHHTTSCBS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHcCCcEEEcCC--Cch-----hHHHHHHHHhcCCCCc
Confidence            468999999999999999998887 25799999999988888876643211000  000     0112221     3689


Q ss_pred             EEEEccChhh
Q 014700          202 YCLHAMPVQF  211 (420)
Q Consensus       202 iVIlaVp~~~  211 (420)
                      ++|.++-...
T Consensus       100 ~vid~~g~~~  109 (174)
T d1p0fa2         100 YAVECAGRIE  109 (174)
T ss_dssp             EEEECSCCHH
T ss_pred             EEEEcCCCch
Confidence            9999988654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.55  E-value=0.021  Score=50.80  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +|||.|.|+ |-+|+.++..|.+.|  |+|+..+|.+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence            489999997 999999999999988  9999998853

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.11  Score=46.80  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             CCeEEEE--cccHHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVL--GGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~II--GaGamG~alA~~La~a-G~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .|+|+||  |.+-+|.++|..|++. |  ..|++.+|++++.++..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g--~~Vi~~~r~~~~~~~~~~   46 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQ   46 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH
Confidence            5789988  6799999999999986 6  899999999987766544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.48  E-value=0.21  Score=44.49  Aligned_cols=81  Identities=11%  Similarity=0.087  Sum_probs=54.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.+.                     +++  .+.++..+
T Consensus         5 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------~~~--~g~~~~~~   59 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEAS---------------------VRE--KGVEARSY   59 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHT--TTSCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            456777786 679999999999999  8999999999877766542                     111  12233333


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .+   ....++++++++...+..=.++|+.
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          60 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            22   2456777887776655444456654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.41  E-value=0.23  Score=44.41  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+.+.|.| ++-+|.++|..|++.|  ++|.+.+|+++.++++.+.
T Consensus         6 gKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~   49 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYG--AKVVIADIADDHGQKVCNN   49 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence            34566667 5779999999999999  8999999999888776653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.40  E-value=0.16  Score=42.35  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=53.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-----ccCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-----l~~a  200 (420)
                      ...+|.|+|+|.+|...+..++..| ...|+..++++++.+..++.|....... ....      .+.++.     -.++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~-~~~~------~~~~~~~~~~~~~G~   99 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGATECVNP-QDYK------KPIQEVLTEMSNGGV   99 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECG-GGCS------SCHHHHHHHHTTSCB
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCCeeEEec-CCch------hHHHHHHHHHhcCCC
Confidence            3468999999999999999999887 3689999999998888877663211000 0000      111111     1368


Q ss_pred             cEEEEccChhhH
Q 014700          201 DYCLHAMPVQFS  212 (420)
Q Consensus       201 DiVIlaVp~~~l  212 (420)
                      |++|-++.....
T Consensus       100 D~vid~~G~~~~  111 (176)
T d2jhfa2         100 DFSFEVIGRLDT  111 (176)
T ss_dssp             SEEEECSCCHHH
T ss_pred             CEEEecCCchhH
Confidence            999999986654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.031  Score=50.48  Aligned_cols=31  Identities=39%  Similarity=0.499  Sum_probs=29.1

Q ss_pred             EEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       130 I~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |+|||+|.-|.+.|..|+++|  ++|+++++.+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSG--LNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            899999999999999999999  9999998765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.32  E-value=0.12  Score=43.13  Aligned_cols=91  Identities=16%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc------cC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal------~~  199 (420)
                      ..+|.|.|+ |.+|...+..+...|  .+|...++++++.+.+++.|....+..         -..+..+.+      ++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~Ga~~vi~~---------~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLGVEYVGDS---------RSVDFADEILELTDGYG   94 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTCCSEEEET---------TCSTHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccccccccccccC---------CccCHHHHHHHHhCCCC
Confidence            468999895 999999888888777  899999999888888877653211000         001222222      35


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+||-++....++..++-+.    ++..+|.+
T Consensus        95 ~d~v~d~~g~~~~~~~~~~l~----~~G~~v~~  123 (183)
T d1pqwa_          95 VDVVLNSLAGEAIQRGVQILA----PGGRFIEL  123 (183)
T ss_dssp             EEEEEECCCTHHHHHHHHTEE----EEEEEEEC
T ss_pred             EEEEEecccchHHHHHHHHhc----CCCEEEEE
Confidence            899999998766666554443    34455544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.28  E-value=0.09  Score=44.34  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-----ccCC
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGA  200 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-----l~~a  200 (420)
                      ...+|.|+|+|.+|...+..+...| ...|++.++++++.+..++.|....+.+. ..+      ...+..     -.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~-~~~------~~~~~~~~~~~~~G~   99 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDCLNPR-ELD------KPVQDVITELTAGGV   99 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECGG-GCS------SCHHHHHHHHHTSCB
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCcccCCc-cch------hhhhhhHhhhhcCCC
Confidence            3468999999999999999888887 24788899999888777776643211000 000      011111     2468


Q ss_pred             cEEEEccChhh
Q 014700          201 DYCLHAMPVQF  211 (420)
Q Consensus       201 DiVIlaVp~~~  211 (420)
                      |++|-|+....
T Consensus       100 d~vie~~G~~~  110 (174)
T d1e3ia2         100 DYSLDCAGTAQ  110 (174)
T ss_dssp             SEEEESSCCHH
T ss_pred             cEEEEecccch
Confidence            99999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.25  E-value=0.041  Score=44.06  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .+++.|||+|.+|.=+|..|++.|  .+|+++.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeec
Confidence            579999999999999999999998  8999998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.24  E-value=0.11  Score=43.07  Aligned_cols=78  Identities=13%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-----ccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-----l~~aD  201 (420)
                      ..+|.|+|+|.+|...+..++..| ...|+..++++++.+..++.|..........       ....++.     -.+.|
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~-------~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGATDFVNPNDH-------SEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCCEEECGGGC-------SSCHHHHHHHHHTSCBS
T ss_pred             CCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCCcEEEcCCCc-------chhHHHHHHhhccCCcc
Confidence            468999999999999999988877 3689999999999888888764321100000       0011121     13689


Q ss_pred             EEEEccChhhH
Q 014700          202 YCLHAMPVQFS  212 (420)
Q Consensus       202 iVIlaVp~~~l  212 (420)
                      ++|-++-....
T Consensus       101 ~vid~~G~~~~  111 (175)
T d1cdoa2         101 FSLECVGNVGV  111 (175)
T ss_dssp             EEEECSCCHHH
T ss_pred             eeeeecCCHHH
Confidence            99999986554

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.22  E-value=0.032  Score=49.44  Aligned_cols=34  Identities=18%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ++||.|+|+ |.+|..++..|.++|  |+|++++|+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCC
Confidence            579999996 999999999999998  9999999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.03  E-value=0.17  Score=45.01  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=30.9

Q ss_pred             CCeEEEEcc-c--HHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLGG-G--SFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIGa-G--amG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .+++.|.|+ |  -+|.++|..|++.|  ++|++.+|+++
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~G--a~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQG--ATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence            578899996 5  49999999999999  99999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.049  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||.|||+|.+|+.+|..|++.|. -+++++|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            4699999999999999999999995 5899998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.81  E-value=0.035  Score=51.15  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=31.3

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ..|+|||||.-|.++|..|.+.|  .+|+++++.++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCC
Confidence            47999999999999999999998  89999998765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.81  E-value=0.055  Score=50.27  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             hcCCCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       124 ~~~~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      |...|||.|.| .|-+|+.++..|.+.|  |+|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCC
Confidence            45578999999 5999999999999998  9999998643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.70  E-value=0.35  Score=42.55  Aligned_cols=79  Identities=9%  Similarity=0.035  Sum_probs=54.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+.+.+++..+.-                          +.+++++
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~--------------------------~~~~~~~   56 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAAL--------------------------EAEAIAV   56 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC--------------------------CSSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc--------------------------CCceEEE
Confidence            467778886 669999999999999  99999999998776655421                          0122222


Q ss_pred             c---cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 A---MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 a---Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .   ...+.++++++.+...+.+=.++|+..
T Consensus        57 ~~Dls~~~~i~~~~~~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          57 VADVSDPKAVEAVFAEALEEFGRLHGVAHFA   87 (241)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred             EecCCCHHHHHHHHHHHHHHhCCccEecccc
Confidence            1   124567777777766655555666654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.62  E-value=0.042  Score=48.02  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=30.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      .|.|||+|..|...|..|+++|  ++|.++++++..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence            5999999999999999999998  999999987643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.24  Score=44.32  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..+++.|.|+ +-+|.++|..|++.|  .+|.+.+|+++.++++.+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMG--AHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            3578889996 669999999999999  999999999988877655

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.56  E-value=0.34  Score=42.85  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-| ++-+|.++|..|++.|  ++|.+.+|+++.++.+.+.-.                        ...++.++
T Consensus         6 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~------------------------~~~~~~~~   59 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVG------------------------TPDQIQFF   59 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC------------------------CTTTEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC------------------------CCCcEEEE
Confidence            35666778 4779999999999999  899999999988777665310                        01122222


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ..   ....++++++++...+.+=.++|+.. |+
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA-g~   92 (251)
T d1zk4a1          60 QHDSSDEDGWTKLFDATEKAFGPVSTLVNNA-GI   92 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC-CC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCceEEEecc-cc
Confidence            22   23557777877766555444666654 44

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.37  Score=43.89  Aligned_cols=87  Identities=11%  Similarity=0.064  Sum_probs=57.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|.|+ +-+|.++|..|++.|  ++|.+.+|+.+.++...++- ..                ...+ ..+.+++.+
T Consensus        12 gKvalITGas~GIG~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el-~~----------------~~~~-~~~~~~~~~   71 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAADEL-QA----------------NLPP-TKQARVIPI   71 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH-HH----------------TSCT-TCCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH-Hh----------------hhcc-ccCceEEEE
Confidence            467778885 779999999999999  89999999988776554420 00                0000 123455554


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ..   ....++.+++++...+.+=.++|+..
T Consensus        72 ~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          72 QCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            43   24567788887766555545677654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.033  Score=51.32  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.0

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      |||.|.|+ |-+|+.++..|.+.| +++|+++++...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g-~~~V~~ld~~~~   36 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLRED-HYEVYGLDIGSD   36 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHST-TCEEEEEESCCG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CCEEEEEeCCCc
Confidence            79999995 999999999999988 258999987654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.42  E-value=0.28  Score=43.68  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+.+.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~   50 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLT   50 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467778886 679999999999999  899999999988776654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.40  E-value=0.23  Score=44.25  Aligned_cols=84  Identities=11%  Similarity=0.107  Sum_probs=51.9

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~-~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      +.+.|-| ++.||.++|..|++.|  ++|.+.+|+ .+.++.+.+.                     +.+ ..+.+++.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~---------------------~~~-~~g~~~~~~   60 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAG---------------------LAA-QHGVKVLYD   60 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHH---------------------HHH-HHTSCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHH-hcCCcEEEE
Confidence            4445556 5779999999999999  899999986 4445544432                     111 112344444


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      ..   ...+++++++++...+.+=.++|+.. |+
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA-G~   93 (260)
T d1x1ta1          61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNA-GI   93 (260)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHSCCSEEEECC-CC
T ss_pred             ECCCCCHHHHHHHHHHHHHHhCCCcEEEeec-cc
Confidence            33   24567777877766555445666654 44

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.34  E-value=0.22  Score=44.65  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ +.+|.++|..|++.|  .+|.+.+|+++.++++.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~G--a~V~l~~r~~~~l~~~~~   47 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEG--ANVTITGRSSERLEETRQ   47 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            456777785 789999999999999  899999999988776655

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.063  Score=49.46  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      |||.|+|+ |-+|+.++..|.+.|  ++|++++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g--~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG--HDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence            79999995 999999999999998  99999975

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.21  E-value=0.39  Score=42.41  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             CeEEEE-cc-cHHHHHHHHHHHh---cCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVL-GG-GSFGTAMAAHVAN---KKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~II-Ga-GamG~alA~~La~---aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      -||+|| |+ +-+|.++|..|++   .|  ++|.+.+|+++.++++.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G--~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPG--SVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCC--CEEEEEECCHHHHHHHHH
Confidence            478888 75 6799999999997   56  899999999988777655

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.33  Score=43.09  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=37.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+.+.|-|+ +-+|.++|..|++.|  .+|.+.+|+++.++.+.+.
T Consensus         6 GK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~   49 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSG--ARVVICDKDESGGRALEQE   49 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh
Confidence            467888885 899999999999999  8999999999988877764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.04  E-value=0.055  Score=50.02  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHHhcCCCCCCCCCCCCCceEEeCC---HHHhccCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTD---AKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~--~i~~~g~~~~~l~~~~l~~~i~a~td---~~eal~~a  200 (420)
                      .++|.|+|+ |.+|++++..|.+.|  |+|++..|+.....  .+...       ++..+-.. -..++   .+.+..++
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~~~~~~~~~~~~-------~~v~~~~g-D~~d~~~~~~~a~~~~   72 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAI-------PNVTLFQG-PLLNNVPLMDTLFEGA   72 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTS-------TTEEEEES-CCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCcchhhhhhhccc-------CCCEEEEe-eCCCcHHHHHHHhcCC
Confidence            579999995 999999999999998  99999999765332  22221       11110000 00111   34567789


Q ss_pred             cEEEEccCh
Q 014700          201 DYCLHAMPV  209 (420)
Q Consensus       201 DiVIlaVp~  209 (420)
                      |.+++..+.
T Consensus        73 ~~~~~~~~~   81 (350)
T d1xgka_          73 HLAFINTTS   81 (350)
T ss_dssp             SEEEECCCS
T ss_pred             ceEEeeccc
Confidence            999988774

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.99  E-value=0.17  Score=44.74  Aligned_cols=42  Identities=14%  Similarity=0.170  Sum_probs=35.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~   47 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEG--ARLVACDIEEGPLREAAE   47 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            356677775 679999999999999  899999999988777665

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.065  Score=47.71  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=33.2

Q ss_pred             CeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       128 mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      +++.|.| ++.+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G--~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREG--AKVIATDINESKLQELEK   48 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHGGGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence            3444445 6999999999999999  999999999987666544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.15  Score=45.19  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=38.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATG--ARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHh
Confidence            568888895 789999999999999  8999999999988887765

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.11  Score=44.01  Aligned_cols=92  Identities=20%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             CCeEEEEccc-HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCC-CC---ceEEe--CCHHHhccC
Q 014700          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PE---NVIAT--TDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaG-amG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l-~~---~i~a~--td~~eal~~  199 (420)
                      .++|.|||-+ .+|.++|..|++.|  ..|+.++.+...  .... .      ....+ ..   .+...  +.+++....
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~g--aTVt~~~~~~~~--~~~~-~------~~~~~~~~~~~~~~~~~~~~lk~~~~~   97 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQ--KFTR-G------ESLKLNKHHVEDLGEYSEDLLKKCSLD   97 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEE--EEES-C------CCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred             CCEEEEECCccccHHHHHHHHHHCC--CEEEEecccccc--cccc-c------cceeeeeeccccccccchhHHhhcccc
Confidence            7899999966 56999999999988  899988754210  0000 0      00111 00   11111  125566678


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +|++|.+++...+.    --.+++++|+++|++.
T Consensus        98 aDIvIsavG~p~~~----i~~d~ik~GavvIDvG  127 (171)
T d1edza1          98 SDVVITGVPSENYK----FPTEYIKEGAVCINFA  127 (171)
T ss_dssp             CSEEEECCCCTTCC----BCTTTSCTTEEEEECS
T ss_pred             CCEEEEccCCCccc----cChhhcccCceEeecc
Confidence            99999999865420    0145778899998873

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.84  E-value=0.35  Score=39.84  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc-----cCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal-----~~aD  201 (420)
                      ..+|.|+|+|.+|...+..+...|. ..|+..++++++.+..++.|.......    .   ...++.++.+     ..+|
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~~i~~----~---~~~~~~~~~~~~~~~~g~D  100 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATECINP----Q---DFSKPIQEVLIEMTDGGVD  100 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSEEECG----G---GCSSCHHHHHHHHTTSCBS
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcEEEeC----C---chhhHHHHHHHHHcCCCCc
Confidence            4689999999999988888888772 577788888888877777664211000    0   0001222221     4689


Q ss_pred             EEEEccChhhHH
Q 014700          202 YCLHAMPVQFSS  213 (420)
Q Consensus       202 iVIlaVp~~~l~  213 (420)
                      +||-++......
T Consensus       101 ~vid~~G~~~~~  112 (176)
T d2fzwa2         101 YSFECIGNVKVM  112 (176)
T ss_dssp             EEEECSCCHHHH
T ss_pred             EeeecCCCHHHH
Confidence            999999866543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.32  Score=40.24  Aligned_cols=83  Identities=10%  Similarity=-0.019  Sum_probs=54.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc------cC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal------~~  199 (420)
                      ..+|.|+| +|.+|..........|  .+|+..++++++.+.+++.|........         ..|..+.+      ..
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~~vi~~~---------~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYR---------EEDLVERLKEITGGKK   97 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTTCC
T ss_pred             CCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCeEEEECC---------CCCHHHHHHHHhCCCC
Confidence            46899996 5668888887777777  8999999999998888887643110000         01222222      24


Q ss_pred             CcEEEEccChhhHHHHHHHhh
Q 014700          200 ADYCLHAMPVQFSSSFLEGIS  220 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~  220 (420)
                      .|+|+-++........+..+.
T Consensus        98 ~d~v~d~~g~~~~~~~~~~l~  118 (179)
T d1qora2          98 VRVVYDSVGRDTWERSLDCLQ  118 (179)
T ss_dssp             EEEEEECSCGGGHHHHHHTEE
T ss_pred             eEEEEeCccHHHHHHHHHHHh
Confidence            688888887766655554443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.76  E-value=0.042  Score=50.16  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             CCCeEEEEcccHHHHHHHHHHH-----hcCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVA-----NKKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La-----~aG~~~~V~l~~r~~  162 (420)
                      +..-|.|||+|..|.++|..|+     ++|  ++|+++++.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~   45 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRS   45 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCC
Confidence            3457999999999999999997     467  8999999864

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.71  E-value=0.45  Score=41.75  Aligned_cols=83  Identities=14%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             CeEE-EEcc-cHHHHHHHHHHHhcCCCCe-------EEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          128 NKVV-VLGG-GSFGTAMAAHVANKKSQLK-------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       128 mkI~-IIGa-GamG~alA~~La~aG~~~~-------V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      ++|. |-|+ +-+|.++|..|++.|  ++       |.+++|+++.++++.+.                     +.+  .
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G--~~~~~~~~~v~~~~r~~~~l~~~~~~---------------------~~~--~   55 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAA--RHHPDFEPVLVLSSRTAADLEKISLE---------------------CRA--E   55 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHT--TTCTTCCEEEEEEESCHHHHHHHHHH---------------------HHT--T
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhC--ccccccCcEEEEEeCCHHHHHHHHHH---------------------HHh--c
Confidence            4555 4575 779999999999998  55       88999999887776542                     111  1


Q ss_pred             CCcEEEEcc---ChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          199 GADYCLHAM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       199 ~aDiVIlaV---p~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.++..+.+   ....++.+++++...+.+=.++|+.. |+
T Consensus        56 g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA-g~   95 (240)
T d2bd0a1          56 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA-GV   95 (240)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC-CC
T ss_pred             CCcEEEEEecCCCHHHHHHHHHHHHHHcCCcceeeccc-cc
Confidence            223333322   23567777888776665545666654 44

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.55  E-value=0.065  Score=43.87  Aligned_cols=31  Identities=29%  Similarity=0.591  Sum_probs=27.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||.|||+|..|.-+|..|++ +  .+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T--SEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-C--CCEEEEeccc
Confidence            89999999999999999975 4  6999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.54  E-value=0.32  Score=43.31  Aligned_cols=42  Identities=19%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLS   50 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888885 779999999999999  899999999987776654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.49  E-value=0.21  Score=44.48  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+++.|-|+ +-+|.++|..|++.|  ++|.+.+|+.+..+++.++                     +.+. .+.++..+
T Consensus         9 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~---------------------~~~~-~g~~~~~~   64 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAG--ANVAVIYRSAADAVEVTEK---------------------VGKE-FGVKTKAY   64 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCTTHHHHHHH---------------------HHHH-HTCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHHH-hCCceEEE
Confidence            356666785 669999999999999  9999999987765544332                     0010 12233333


Q ss_pred             cc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          206 AM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       206 aV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      ..   ....++.+++++...+.+=.++|+..
T Consensus        65 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          65 QCDVSNTDIVTKTIQQIDADLGPISGLIANA   95 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCcEecccc
Confidence            32   34567777777766655434566543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.074  Score=48.58  Aligned_cols=31  Identities=16%  Similarity=0.411  Sum_probs=28.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      +||.|.|+ |-+|+.++..|.+.|  ++|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g--~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDG--HEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeC
Confidence            69999995 999999999999998  99999986

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.40  E-value=0.41  Score=42.27  Aligned_cols=85  Identities=9%  Similarity=0.027  Sum_probs=55.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      .+.+.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++.+.++-.           ..+..        -.+|+   
T Consensus         6 gK~alITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~-----------~~~~~--------~~~Dv---   61 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA-----------DAARY--------VHLDV---   61 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG-----------GGEEE--------EECCT---
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh-----------CcceE--------EEeec---
Confidence            355666685 779999999999999  899999999988877765310           00110        01121   


Q ss_pred             ccChhhHHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                       .....++++++++.....+=.++|+.. |+.
T Consensus        62 -~~~~~v~~~~~~~~~~~g~idilinnA-G~~   91 (244)
T d1nffa_          62 -TQPAQWKAAVDTAVTAFGGLHVLVNNA-GIL   91 (244)
T ss_dssp             -TCHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             -CCHHHHHHHHHHHHHHhCCCeEEEECC-ccc
Confidence             234567788888766555445666654 443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.20  E-value=0.57  Score=41.67  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~-~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVI  204 (420)
                      .+.+.|.| ++.+|.++|..|++.|  ++|.+.+|+.+ .++.+.+.                     +++  .+.+++.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~---------------------~~~--~g~~~~~   61 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEE---------------------IKK--VGGEAIA   61 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHH---------------------HHH--TTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHh--cCCcEEE
Confidence            45566667 5889999999999999  99999998753 44444331                     111  1223333


Q ss_pred             Ecc---ChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          205 HAM---PVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       205 laV---p~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      +.+   ....++++++++...+.+=.++|+..
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA   93 (261)
T d1geea_          62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            332   23557777777765554444666654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.08  E-value=0.49  Score=43.21  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=58.1

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEe-----------CCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-----------RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~-----------r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~e  195 (420)
                      .++|+|=|.|++|...|..|.+.|  ..|+.++           .+.+.+.++...+......++..+.        .++
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~G--akvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~--------~~~  105 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFG--AKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY--------EGS  105 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBC--------CSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccC--------Ccc
Confidence            579999999999999999999998  7877654           3445555555544333222222211        112


Q ss_pred             hc-cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          196 AL-LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       196 al-~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      .+ .+||++|-|--...+.   .+-.+.++ -++|+-..||-
T Consensus       106 ~~~~~~DIliPaA~~~~I~---~~~a~~l~-ak~I~EgAN~P  143 (293)
T d1hwxa1         106 ILEVDCDILIPAASEKQLT---KSNAPRVK-AKIIAEGANGP  143 (293)
T ss_dssp             GGGCCCSEEEECSSSSCBC---TTTGGGCC-CSEEECCSSSC
T ss_pred             cccCCccEEeecccccccc---HHHHHHHh-hCEEeccCCCC
Confidence            22 4899999875543321   11223332 35777777764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.06  E-value=0.41  Score=42.86  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|-|+ +-+|.++|..|++.|  .+|.+.+|+++.++++.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEG--AQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            456777785 779999999999999  899999999987766654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.51  Score=41.51  Aligned_cols=81  Identities=20%  Similarity=0.117  Sum_probs=52.5

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      +.+.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.+.- .          .+...       + .+|+    
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~-~----------~~~~~-------~-~~Dv----   59 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARG--AKVIGTATSENGAQAISDYL-G----------ANGKG-------L-MLNV----   59 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH-G----------GGEEE-------E-ECCT----
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh-C----------CCCcE-------E-EEEe----
Confidence            45555584 789999999999999  99999999998887776531 0          00000       0 0111    


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .....++++++++...+.+=.++|+..
T Consensus        60 ~~~~~v~~~~~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          60 TDPASIESVLEKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCHHHhhhhhhhhhcccCCcceehhhh
Confidence            234567778888776655445666654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.98  E-value=0.21  Score=44.51  Aligned_cols=43  Identities=12%  Similarity=0.190  Sum_probs=36.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      .+++.|-|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.++
T Consensus         5 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~   48 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREG--ARVAIADINLEAARATAAE   48 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTT--EEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence            356777785 889999999999999  9999999999887776653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.83  E-value=0.32  Score=40.66  Aligned_cols=93  Identities=12%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-----ccC
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLG  199 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-----l~~  199 (420)
                      ...+|.|.|+ |.+|.+........|  .+|+..++++++.+.+++.|....+....        .+..+++     -.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--------~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFDAAFNYKT--------VNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTS--------CSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhhhhccccc--------ccHHHHHHHHhhcCC
Confidence            3568999998 667777777766667  89999999999988888876432111000        0011111     246


Q ss_pred             CcEEEEccChhhHHHHHHHhhhcCCCCCeEEEe
Q 014700          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       200 aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      .|+||=++......+.    ...++++-.++.+
T Consensus        99 vd~v~D~vG~~~~~~~----~~~l~~~G~~v~~  127 (182)
T d1v3va2          99 YDCYFDNVGGEFLNTV----LSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEEESSCHHHHHHH----GGGEEEEEEEEEC
T ss_pred             CceeEEecCchhhhhh----hhhccCCCeEEee
Confidence            8999999986555444    4444444445444

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.23  Score=43.82  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=38.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g  172 (420)
                      .+++.|.|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~   49 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKEC   49 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc
Confidence            567888896 679999999999999  99999999998888877653

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.57  E-value=0.39  Score=40.61  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             CCeEEEEc-c-cHHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIG-a-GamG~alA~~La~aG~~~~V~l~~r~-----~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      ..||++|| + -++..++...+++-|  .+|++....     ++..+.+.+....        ....+..++++++++++
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G--~~l~l~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~eai~~   74 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLG--MDVRIAAPKALWPHDEFVAQCKKFAEE--------SGAKLTLTEDPKEAVKG   74 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTT--CEEEEECCGGGSCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTT
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcC--CEEEEEccHHHHhhhHHHHHHHHHhhc--------cCCeEEEEeChhhcccc
Confidence            46999999 4 489999999999987  899999864     3333333321100        01246788999999999


Q ss_pred             CcEEEEcc
Q 014700          200 ADYCLHAM  207 (420)
Q Consensus       200 aDiVIlaV  207 (420)
                      +|+|..-+
T Consensus        75 aDvVyt~~   82 (185)
T d1dxha2          75 VDFVHTDV   82 (185)
T ss_dssp             CSEEEECC
T ss_pred             ccEEEeeh
Confidence            99988754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.53  E-value=0.078  Score=43.86  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=27.4

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .++|.|||+|..|.-+|..|.+.|  .+|++..+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g--~~v~v~~~~   35 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASG--WEGNIRLVG   35 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcC--CceEEEEec
Confidence            468999999999999999999988  666655433

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.46  E-value=0.16  Score=44.95  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=32.5

Q ss_pred             CCCeEEEEcc-cH--HHHHHHHHHHhcCCCCeEEEEeCCHHHH
Q 014700          126 RTNKVVVLGG-GS--FGTAMAAHVANKKSQLKVYMLMRDPAVC  165 (420)
Q Consensus       126 ~~mkI~IIGa-Ga--mG~alA~~La~aG~~~~V~l~~r~~~~~  165 (420)
                      ..++|.|.|+ |.  ||.++|+.|++.|  .+|.+.+|++++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~G--a~Vil~~~~~~~~   45 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQG--AQLVLTGFDRLRL   45 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTT--CEEEEEECSCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcC--CEEEEEeCChHHH
Confidence            4578999996 65  9999999999999  8999999987654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.34  E-value=0.11  Score=45.78  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=27.5

Q ss_pred             CeE-EEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKV-VVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI-~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ||| .|-| ++-+|.++|..|++.|  ++|.+.+|++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~G--a~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAG--HQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCh
Confidence            555 4557 4779999999999999  8999999865

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.30  E-value=0.32  Score=40.41  Aligned_cols=77  Identities=19%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCH-HH--hccCCc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KT--ALLGAD  201 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~-~e--al~~aD  201 (420)
                      ...+|.|.|+ |.+|......+...|  .+|+..++++++.+.+++.|...           +.-..+. ++  ..+++|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~~-----------~i~~~~~~~~~~~~~g~D   93 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAEE-----------AATYAEVPERAKAWGGLD   93 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCSE-----------EEEGGGHHHHHHHTTSEE
T ss_pred             CCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccce-----------eeehhhhhhhhhcccccc
Confidence            4568999996 999998888777777  89999999888888777765321           1111121 11  134688


Q ss_pred             EEEEccChhhHHHHH
Q 014700          202 YCLHAMPVQFSSSFL  216 (420)
Q Consensus       202 iVIlaVp~~~l~~vl  216 (420)
                      +||=++.. .+...+
T Consensus        94 ~v~d~~G~-~~~~~~  107 (171)
T d1iz0a2          94 LVLEVRGK-EVEESL  107 (171)
T ss_dssp             EEEECSCT-THHHHH
T ss_pred             ccccccch-hHHHHH
Confidence            88887763 344433

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.06  E-value=0.49  Score=41.58  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCeEEEEccc---HHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 014700          127 TNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (420)
Q Consensus       127 ~mkI~IIGaG---amG~alA~~La~aG~~~~V~l~~r~~~~~~  166 (420)
                      .+++.|.|++   -+|.++|..|++.|  ++|.+.+|+++..+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~G--a~V~i~~~~~~~~~   48 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAG--AEVALSYQAERLRP   48 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTT--CEEEEEESSGGGHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHH
Confidence            4678888874   49999999999999  89999999875433

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.81  E-value=0.76  Score=37.62  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             CCeEEEEc-c-cHHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHH---HHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSI---NEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIG-a-GamG~alA~~La~aG~~~~V~l~~r~~-----~~~~~i---~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      ..||++|| + .++-.++...+++-|  .++++.....     +..+..   ....           ...+..++|++++
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g--~~i~~~~P~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~d~~~a   69 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMG--MNFVACGPEELKPRSDVFKRCQEIVKET-----------DGSVSFTSNLEEA   69 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTT--CEEEEESCGGGCCCHHHHHHHHHHHHHH-----------CCEEEEESCHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcC--CEEEEecchhhhhhhhHHHHHHHHHhhc-----------CCceEEEecHHHh
Confidence            57999999 4 689999999999977  8999887643     222221   1111           1246788899999


Q ss_pred             ccCCcEEEEcc
Q 014700          197 LLGADYCLHAM  207 (420)
Q Consensus       197 l~~aDiVIlaV  207 (420)
                      ++++|+|..-.
T Consensus        70 i~~aDviyt~~   80 (161)
T d1vlva2          70 LAGADVVYTDV   80 (161)
T ss_dssp             HTTCSEEEECC
T ss_pred             hhhhhheeccc
Confidence            99999999755

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.78  E-value=0.29  Score=43.97  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEG--AKVAVLDKSAERLAELET   47 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467778885 899999999999999  999999999988776655

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.78  E-value=0.42  Score=40.06  Aligned_cols=93  Identities=24%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEE-eCCHHHh---ccCCcEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA---LLGADYC  203 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a-~td~~ea---l~~aDiV  203 (420)
                      .+|.=||+|.-..+++  |++.+  .+|+.+|.+++.++..+++-..      ..+..++.+ ..|..+.   ....|+|
T Consensus        35 ~~VLDiGcGsG~~s~~--lA~~~--~~V~avD~~~~~l~~a~~n~~~------~gl~~~v~~~~gda~~~~~~~~~~D~v  104 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTLE--LAGRV--RRVYAIDRNPEAISTTEMNLQR------HGLGDNVTLMEGDAPEALCKIPDIDIA  104 (186)
T ss_dssp             CEEEEESCTTSHHHHH--HHTTS--SEEEEEESCHHHHHHHHHHHHH------TTCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred             CEEEEEECCeEccccc--ccccc--eEEEEecCCHHHHHHHHHHHHH------cCCCcceEEEECchhhcccccCCcCEE
Confidence            4676688777655443  45555  6899999999877766653110      112234433 2344443   3568999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEE
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      ++.-+.....++++.+..+++++..++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~LkpgG~lv  131 (186)
T d1l3ia_         105 VVGGSGGELQEILRIIKDKLKPGGRII  131 (186)
T ss_dssp             EESCCTTCHHHHHHHHHHTEEEEEEEE
T ss_pred             EEeCccccchHHHHHHHHHhCcCCEEE
Confidence            998888888899999988888876554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.71  E-value=0.71  Score=40.37  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=59.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH--------HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP--------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~--------~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      ..||.|+|+|.-|..+|..|.+.+. .+++++||.-        ...+..+....      ...-+  .....++.++++
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~------~~~~~--~~~~~~l~~~l~   96 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIA------RITNP--ERLSGDLETALE   96 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHH------HTSCT--TCCCSCHHHHHT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHH------hhhcc--hhhhcchHhhcc
Confidence            4699999999999999999998874 6899998761        11111110000      00000  112236778889


Q ss_pred             CCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCC
Q 014700          199 GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE  237 (420)
Q Consensus       199 ~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~  237 (420)
                      ++++++....... .++.+.   . +.+.-+|..++|-..
T Consensus        97 g~~~~~g~~~~~~~~~e~m~---~-~~~rPIIFpLSNPt~  132 (222)
T d1vl6a1          97 GADFFIGVSRGNILKPEWIK---K-MSRKPVIFALANPVP  132 (222)
T ss_dssp             TCSEEEECSCSSCSCHHHHT---T-SCSSCEEEECCSSSC
T ss_pred             CcceeccccccccccHHHHh---h-cCCCCEEEecCCCcc
Confidence            9998877654333 333332   2 345678888888654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.70  E-value=0.086  Score=48.62  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=27.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      ||||.|.| .|-+|+.++..|.++|  ++|.++.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g--~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNH--PDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHC--TTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCC--CCeEEEEE
Confidence            79999999 6999999999999998  77665554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.69  E-value=0.19  Score=39.02  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhc---CCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~a---G~~~~V~l~~r~~  162 (420)
                      .++|+|||+|.+|.=+|..|++.   |  .+|+++.|.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g--~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccc--cccceecccc
Confidence            47999999999999999877653   5  7999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.64  E-value=0.84  Score=40.45  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=32.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSIN  169 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~-~~~~~~i~  169 (420)
                      .+++.|-| ++.+|.++|..|++.|  ++|.+.+|+ ++.++.+.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~   60 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVV   60 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCchHHHHHHH
Confidence            46788888 5999999999999999  999998876 44444443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.35  Score=42.42  Aligned_cols=40  Identities=10%  Similarity=0.200  Sum_probs=32.2

Q ss_pred             CCeEEEEccc---HHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700          127 TNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus       127 ~mkI~IIGaG---amG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      .++|.|.|++   -+|.++|..|++.|  ++|.+.+|+++..+.+
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G--~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRV   47 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSTTTHHHH
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence            4678888865   48899999999999  9999999987644443

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.24  Score=39.01  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=40.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHHHcCCChh
Q 014700          308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNS-MAALVAQGCSEIRWLATKMGAKPA  362 (420)
Q Consensus       308 Di~g~e~~~alkNv~Ai~~G~~~gl~lg~N~-~~al~~~~~~E~~~lA~a~Gi~~~  362 (420)
                      ||.+..|.|++.|....+.....+...+.-. ...++.+.+.|+..++++.|+...
T Consensus         1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~   56 (124)
T d1ks9a1           1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTS   56 (124)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            6788899999999865555555555544211 125678899999999999998743

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.50  E-value=0.14  Score=40.05  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~  162 (420)
                      .++|.|||+|.+|.=+|..|.+-|. +.+|+++.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4799999999999999987765431 26899998754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.30  E-value=0.31  Score=40.80  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh-----ccCCc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea-----l~~aD  201 (420)
                      ...|.|+|+|.+|......+...|. .+|++.|+++++.+..++.|......+. .      .....++.     -.+.|
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~~in~~-~------~~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATECISPK-D------STKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSEEECGG-G------CSSCHHHHHHHHHTSCCC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcEEECcc-c------cchHHHHHHHHhccccce
Confidence            4579999999999999999988872 5899999999998888877653211000 0      00011111     24689


Q ss_pred             EEEEccChhh
Q 014700          202 YCLHAMPVQF  211 (420)
Q Consensus       202 iVIlaVp~~~  211 (420)
                      ++|.++....
T Consensus       102 ~vi~~~g~~~  111 (176)
T d1d1ta2         102 YTFEVIGHLE  111 (176)
T ss_dssp             EEEECSCCHH
T ss_pred             EEEEeCCchH
Confidence            9999988654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.17  Score=43.05  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=28.9

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -|.|||+|.-|...|..+++.|  .+|.+++++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYG--QKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecc
Confidence            5899999999999999999998  899999875

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.51  Score=46.63  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=30.9

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..||+|||+|.+|+-++..|+..|. ..++++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            4699999999999999999999985 5899998654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.11  E-value=0.36  Score=42.92  Aligned_cols=42  Identities=14%  Similarity=0.183  Sum_probs=36.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+++.|.|+ +-||.++|..|++.|  ++|.+.+|+++.++++.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~   47 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAR   47 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            568889996 579999999999999  899999999987776654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.11  Score=43.66  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      ..+|.|||+|..|..-|..+++.|  .+|+++++.+
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeec
Confidence            458999999999999999999998  8999998654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.68  E-value=0.15  Score=42.94  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .++|.|||+|.-|..-|..|++.|  .+|.++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcC--CcEEEEEee
Confidence            469999999999999999999998  899999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.54  E-value=0.17  Score=45.16  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=29.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhc-CCCCeEEEEeCCHH
Q 014700          129 KVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPA  163 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~a-G~~~~V~l~~r~~~  163 (420)
                      .|.|||+|.-|.+.|..|++. |  ++|+++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCC
Confidence            599999999999999999874 7  99999998753

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.53  E-value=0.91  Score=39.89  Aligned_cols=96  Identities=17%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEEe-----------CCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM-----------RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~~-----------r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      .++|+|=|.|++|..+|..|.+ .|  ..|+..+           .+.+.+..+.+.+.....     .+ ..... +.+
T Consensus        31 g~~vaIqG~GnVG~~~a~~L~~e~G--a~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~-----~~-~~~~~-~~~  101 (234)
T d1b26a1          31 KATVAVQGFGNVGQFAALLISQELG--SKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVT-----YP-KGERI-TNE  101 (234)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHHC--CEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTT-----CS-SCEEE-CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC--CceEEeecCCCcEEeccccchHHHHHHHHhhcceec-----cc-cceee-ccc
Confidence            6799999999999999999975 57  6666443           233344444443321111     11 12222 344


Q ss_pred             Hhcc-CCcEEEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TALL-GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal~-~aDiVIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.+. +||+++-|--... ..+.++.    ++ -.+|+-..|+-
T Consensus       102 ~~~~~~~DI~~PcA~~~~I~~~~a~~----l~-~~~I~e~AN~p  140 (234)
T d1b26a1         102 ELLELDVDILVPAALEGAIHAGNAER----IK-AKAVVEGANGP  140 (234)
T ss_dssp             HHHTSCCSEEEECSCTTCBCHHHHTT----CC-CSEEECCSSSC
T ss_pred             cccccccceeecchhcccccHHHHHH----hh-hceEeecCCCC
Confidence            5544 8999987754433 3333333    32 34677667754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.47  E-value=0.12  Score=39.90  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=27.6

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++|.|||+|+-|.=+|..|++.+  .+|++..|..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEecC
Confidence            589999999999999999999876  5555555543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.47  E-value=0.21  Score=40.65  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=28.7

Q ss_pred             CeEEEE--cccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~II--GaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .++.|+  |+|.+|.-+|..|++.|  ++|+++.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCC
Confidence            355555  99999999999999999  9999999875

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.42  E-value=0.22  Score=45.44  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.8

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .|||.|.| .|-+|+.++..|.++|  ++|.+++|+..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence            38999999 5999999999999998  99999998764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.30  E-value=0.39  Score=34.89  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=37.2

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhc
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g  172 (420)
                      ..++|.|.|+ |.+|+.....+...|  .+|+...+++++.+.+++.|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G--~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHHCC
Confidence            3568999886 999998888777777  89999999998888877643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.21  E-value=0.19  Score=46.29  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=28.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -|.|||+|.-|+.+|.+|+++|  ++|.++.+-
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAG--VQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCc--CeEEEEecC
Confidence            4789999999999999999998  999999874

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.12  E-value=1.3  Score=38.86  Aligned_cols=40  Identities=13%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i  168 (420)
                      .+.|-|-|+ +.+|.++|..|++.|  .+|.+.+|+.+..+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G--~~vii~~r~~~~~~~~   45 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRN--LKNFVILDRVENPTAL   45 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTC--CSEEEEEESSCCHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCcccHHHH
Confidence            467888886 579999999999999  8888887655433333

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.03  E-value=0.34  Score=42.99  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHh
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~  171 (420)
                      +++.|.|+ +-+|.++|..|++.|  ++|.+.+|+++.++++.++
T Consensus         7 K~alITGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~   49 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEG--AKVAFSDINEAAGQQLAAE   49 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence            45666674 679999999999999  8999999999887776653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.41  Score=41.75  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=33.7

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      .+++.|.|+ +-+|.++|..|++.|  ++|.+.+|+++.+++
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~G--a~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEG--AEVTICARNEELLKR   43 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHh
Confidence            468889996 779999999999999  999999999875543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.3  Score=42.77  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=34.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+.+.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.+
T Consensus         5 GKvalITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQG--ASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECTTSSHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH
Confidence            355667785 779999999999999  899999999877665554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.72  E-value=0.99  Score=37.11  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=49.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~-----~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~a  200 (420)
                      ..||++||- .++..+++..|.+-|  .+|++....     ++..+.+.+....        ....+..+.|++++++++
T Consensus         4 gl~Ia~VGD~~nv~~Sli~~l~~~g--~~v~~~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           4 GVKVVYVGDGNNVAHSLMIAGTKLG--ADVVVATPEGYEPDEKVIKWAEQNAAE--------SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             TCEEEEESCCCHHHHHHHHHHHHTT--CEEEEECCTTCCCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcC--CeEEEecccccCCChHHHHHHHHhhhc--------ccceEEEecCHHHHhhhc
Confidence            579999995 567788888888877  899988653     3334444332110        012356788999999999


Q ss_pred             cEEEEcc
Q 014700          201 DYCLHAM  207 (420)
Q Consensus       201 DiVIlaV  207 (420)
                      |+|..-.
T Consensus        74 dviy~~~   80 (163)
T d1pvva2          74 DVIYTDV   80 (163)
T ss_dssp             SEEEECC
T ss_pred             cEEeecc
Confidence            9988643

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.67  E-value=0.29  Score=43.70  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             CCeEEEEcccHH--HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEe-CCHHHhc--cCCc
Q 014700          127 TNKVVVLGGGSF--GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTAL--LGAD  201 (420)
Q Consensus       127 ~mkI~IIGaGam--G~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~-td~~eal--~~aD  201 (420)
                      .++|.=+|+|.-  ..++|..+...|   .|+.++++++.++..+++-..      .....++... .|..+.+  ...|
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~------~~~~~nv~~~~~Di~~~~~~~~fD  156 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSE------FYDIGNVRTSRSDIADFISDQMYD  156 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHT------TSCCTTEEEECSCTTTCCCSCCEE
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHH------hcCCCceEEEEeeeecccccceee
Confidence            478988887654  445555554444   899999999887766653111      0011233321 2333333  2479


Q ss_pred             EEEEccChhhHHHHHHHhhhcCCCCCeEEEec
Q 014700          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (420)
Q Consensus       202 iVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~s  233 (420)
                      .||+-+|...  ++++.+...++++-.++...
T Consensus       157 ~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         157 AVIADIPDPW--NHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEECCSCGG--GSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCchH--HHHHHHHHhcCCCceEEEEe
Confidence            9999888543  33455566667777666543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.62  E-value=0.22  Score=42.28  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      -|.|||+|.-|...|..+++.|  .+|.++++.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT--CCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            5899999999999999999998  8999998753

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.59  E-value=1  Score=36.58  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCeEEEEcc---cHHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc
Q 014700          127 TNKVVVLGG---GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (420)
Q Consensus       127 ~mkI~IIGa---GamG~alA~~La~aG~~~~V~l~~r~~-----~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~  198 (420)
                      ..||++||=   +++..+++..+.+-|  .++++.....     +..+.+.+.+            ..+..++|++++++
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~------------~~~~~~~d~~~av~   69 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFYD--VELYLISPELLRMPRHIVEELREKG------------MKVVETTTLEDVIG   69 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGSC--EEEEEECCGGGCCCHHHHHHHHHTT------------CCEEEESCTHHHHT
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhcC--CcEEEEccchhhcchHHHHHHHhhc------------ccceeecCHHHhhc
Confidence            569999996   789999999999877  8999887642     2333444332            13567789999999


Q ss_pred             CCcEEEEccC
Q 014700          199 GADYCLHAMP  208 (420)
Q Consensus       199 ~aDiVIlaVp  208 (420)
                      ++|+|..-.-
T Consensus        70 ~aDvvy~~~~   79 (157)
T d1ml4a2          70 KLDVLYVTRI   79 (157)
T ss_dssp             TCSEEEECCC
T ss_pred             cCcEEEeecc
Confidence            9998877543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.46  E-value=0.85  Score=40.24  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=52.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHh-cCCCCeEEEE-eCC----------HHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYML-MRD----------PAVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~-aG~~~~V~l~-~r~----------~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~  194 (420)
                      .++|+|-|.|++|..+|..|.+ .|  ..|+.. |.+          .+.+.+....+.....+++      .... +.+
T Consensus        32 g~~v~IqGfGnVG~~~a~~L~~~~G--~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~------~~~~-~~~  102 (239)
T d1gtma1          32 GKTIAIQGYGNAGYYLAKIMSEDFG--MKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPG------ATNI-TNE  102 (239)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTT------SEEE-CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC--cceeeccccccceecCCcCCHHHHHHHHHhccccccCCC------Ceee-ccc
Confidence            5799999999999999999976 46  555533 332          2333333332222221111      2222 334


Q ss_pred             Hhc-cCCcEEEEccChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          195 TAL-LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       195 eal-~~aDiVIlaVp~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                      +.+ .+||+++-|-....+.   ++..+.++ -++|+-..|+-
T Consensus       103 ~i~~~~~DIl~PcA~~~~I~---~~~a~~i~-ak~I~e~AN~p  141 (239)
T d1gtma1         103 ELLELEVDVLAPAAIEEVIT---KKNADNIK-AKIVAEVANGP  141 (239)
T ss_dssp             HHHHSCCSEEEECSCSCCBC---TTGGGGCC-CSEEECCSSSC
T ss_pred             ccccccccEEeecccccccc---HHHHHhcc-ccEEEecCCCC
Confidence            443 4799998876543321   11222232 34666666654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.45  E-value=0.19  Score=42.86  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .--|.|||+|.-|...|..+++.|  .+|.+++..+
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G--~kV~lie~~~   38 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRG   38 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            346899999999999999999998  8999998653

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=5.1  Score=31.17  Aligned_cols=92  Identities=22%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ..||.|-|. |.-|+..+..+.+.|  -+|..- .++.+      .|.         ...++-+.++.+|+++  ++|.-
T Consensus         6 ~trVlvQGiTG~~G~~ht~~m~~yG--T~vVaG-VtPgk------gG~---------~~~giPVf~sV~eAv~~~~~~~S   67 (119)
T d2nu7a1           6 NTKVICQGFTGSQGTFHSEQAIAYG--TKMVGG-VTPGK------GGT---------THLGLPVFNTVREAVAATGATAS   67 (119)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT--CEEEEE-ECTTC------TTE---------EETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhC--CceEEE-EccCC------CCc---------ccCCCchhhHHHHHHHHhCCCeE
Confidence            468999997 999999999999988  676532 22211      111         1124667788888765  68999


Q ss_pred             EEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       204 IlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++.||... ...+++.+..-+   ..|+.++.|+..-
T Consensus        68 vIfVPp~~a~dA~~EAi~agI---~~iV~ITEgIP~~  101 (119)
T d2nu7a1          68 VIYVPAPFCKDSILEAIDAGI---KLIITITEGIPTL  101 (119)
T ss_dssp             EECCCGGGHHHHHHHHHHTTC---SEEEECCCCCCHH
T ss_pred             EEeccHHHHHHHHHHHHHCCC---CEEEEecCCCCHH
Confidence            99999765 555556665434   3778889999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.44  E-value=0.25  Score=46.05  Aligned_cols=31  Identities=35%  Similarity=0.603  Sum_probs=28.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEe
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLM  159 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~  159 (420)
                      .|||.|.|+ |-+|+.++..|.+.|  |+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g--~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN--YEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEe
Confidence            489999995 999999999999998  9999997

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.25  Score=40.61  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.1

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .|.|||+|..|...|..+++.|  .+|.+++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G--~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKG--IRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--CCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe
Confidence            5899999999999999999998  899999863

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.26  E-value=0.68  Score=40.93  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=27.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEe
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM  159 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~  159 (420)
                      .++|+|-|.|++|..+|..|.+.|  ..|+.++
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~G--akvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMG--AKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CeEEEee
Confidence            679999999999999999999998  7887554

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.13  E-value=0.23  Score=45.26  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -|.|||+|.-|..+|.+|+++|  ++|.++.+.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G--~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAG--YKVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCC--CeEEEEecC
Confidence            5899999999999999999998  999999753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.90  E-value=0.23  Score=44.61  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=29.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      -|.|||+|.-|.+.|..|+++|  .+|+++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSG--AKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            6999999999999999999999  8999998764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=86.76  E-value=1.5  Score=38.52  Aligned_cols=40  Identities=15%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CeEEEE-c-ccHHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHH
Q 014700          128 NKVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSIN  169 (420)
Q Consensus       128 mkI~II-G-aGamG~alA~~La~aG~~~~V~l~~r-~~~~~~~i~  169 (420)
                      |=|+|| | ++-+|.++|..|++.|  ++|.+.++ +++..+.+.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~G--a~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEG--YAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHH
Confidence            347777 5 5789999999999999  89998665 455554443

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.49  E-value=6  Score=30.82  Aligned_cols=92  Identities=16%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcEE
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDiV  203 (420)
                      ..||.|-|. |..|+.-+....+.|  -+|..-. ++.+      .|.        . ..++-+.++.+|+++  ++|.-
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~yG--T~iVaGV-tPgk------gG~--------~-~~giPVf~tV~eAv~~~~~d~S   68 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTYG--TKIVAGV-TPGK------GGM--------E-VLGVPVYDTVKEAVAHHEVDAS   68 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEE-CTTC------TTC--------E-ETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhC--CceEeee-ecCC------CCc--------E-EECCchHhhHHHHHHhcCCeEE
Confidence            358999996 999999999999988  6665332 2211      111        1 124667778888754  68999


Q ss_pred             EEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       204 IlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      ++.||... ...+++.+..-+   .+|+.++.|+...
T Consensus        69 vIfVPp~~a~dAi~EAi~agI---~liv~ITEgVPv~  102 (121)
T d1oi7a1          69 IIFVPAPAAADAALEAAHAGI---PLIVLITEGIPTL  102 (121)
T ss_dssp             EECCCHHHHHHHHHHHHHTTC---SEEEECCSCCCHH
T ss_pred             EEeeCHHHHHHHHHHHHhCCC---cEEEEecCCCCHH
Confidence            99999765 555566665433   3678889999864

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.43  E-value=6.4  Score=31.05  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhcc--CCcE
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~--~aDi  202 (420)
                      ...||.|-|. |.-|+.-+....+.|  -+|..-. ++.+      .|.         ...++-+.++.+||.+  ++|.
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YG--T~iVaGV-tPgK------gG~---------~~~giPVf~tV~eA~~~~~~da   75 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYG--TNLVGGT-TPGK------GGK---------THLGLPVFNTVKEAKEQTGATA   75 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEE-CTTC------TTC---------EETTEEEESSHHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEee-ccCC------CCc---------cccCccchhhHHHHHHhcCCcE
Confidence            3469999996 999999999999998  6765332 2210      111         1124667788888865  7999


Q ss_pred             EEEccChhh-HHHHHHHhhhcCCCCCeEEEeccCCCcc
Q 014700          203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELN  239 (420)
Q Consensus       203 VIlaVp~~~-l~~vl~~i~~~l~~~~iVVs~snGi~~~  239 (420)
                      -++.||..+ ...+++.+..-+   .+||.++.|+..-
T Consensus        76 SvIfVPp~~a~dAi~EAi~agI---~liV~ITEgIPv~  110 (130)
T d1euca1          76 SVIYVPPPFAAAAINEAIDAEV---PLVVCITEGIPQQ  110 (130)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTC---SEEEECCCCCCHH
T ss_pred             EEEecCHHHHHHHHHHHHhCCC---CEEEEecCCCCHH
Confidence            999999765 555566665544   3778889998863

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.27  E-value=0.3  Score=42.00  Aligned_cols=32  Identities=44%  Similarity=0.531  Sum_probs=29.5

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      -|.|||+|.-|...|..+++.|  ++|.++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEG--LKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence            5899999999999999999998  8999998754

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=86.12  E-value=0.26  Score=42.37  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAV  164 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~  164 (420)
                      |||.|||.|.-|+-+..+|.+.+. +.+...++.|...
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~   38 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQV   38 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHH
Confidence            689999999999999999998874 1344455665543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.03  E-value=0.28  Score=45.24  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=28.6

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -+.|||+|.-|..+|.+|+++|  ++|+++.+-
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAG--IPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence            5789999999999999999998  999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.91  E-value=0.39  Score=39.64  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEE
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML  158 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~  158 (420)
                      ..+|.|||+|..|.-+|..|.+.|.+..|++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            34799999999999999999998833344444

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.74  E-value=0.37  Score=43.90  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=28.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      +||.|.|+ |-+|+.++..|.++|  ++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g--~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCc--CEEEEEEC
Confidence            68999995 999999999999998  99999874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.64  E-value=0.32  Score=41.45  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      ..|.|||+|..|...|..+++.|  .+|.+++++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC
Confidence            46999999999999999999999  899999875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.59  E-value=1.2  Score=39.13  Aligned_cols=42  Identities=10%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~  170 (420)
                      .+.+.|.|+ +.+|.++|..|++.|  ++|.+. .++++..+.+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~   49 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVA   49 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHH
Confidence            466777775 779999999999999  899875 566655555444

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.59  E-value=0.33  Score=44.29  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             hhhcCCCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       122 ~~~~~~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      .....+++|-|.|+ |-+|+.++..|.+.|  ++|+++||
T Consensus        11 ~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g--~~V~~~d~   48 (341)
T d1sb8a_          11 ELPAQPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDN   48 (341)
T ss_dssp             HHHHSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             hCCCCCCEEEEecCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence            44555679999995 999999999999998  99999986

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=85.13  E-value=0.33  Score=45.12  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=28.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -+.|||+|.-|+.+|.+|+++|  ++|.++.+-
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAG--KKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCC--CeEEEEEcc
Confidence            4789999999999999999998  899999765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.13  E-value=0.3  Score=42.12  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=27.7

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       129 kI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      ++.|-| ++.+|.++|..|++.|  ++|.+.+|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~G--a~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARG--YRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHT--CEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCcc
Confidence            445556 4899999999999999  99999998754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.42  Score=40.43  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -+.|||+|..|...|..+++.|  .+|.+++++
T Consensus         5 DviIIG~GpaG~~aA~~aar~G--~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELG--ARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecc
Confidence            4889999999999999999998  899999865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.84  E-value=0.32  Score=44.08  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=30.0

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      .-|.|||+|.-|...|..|+++|  ++|.++++.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            35999999999999999999999  8999998764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.70  E-value=0.45  Score=40.10  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .|.|||+|..|...|..+++.|  .+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecC
Confidence            5889999999999999999998  899999875

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.45  Score=37.96  Aligned_cols=35  Identities=20%  Similarity=0.478  Sum_probs=28.7

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHh----cCCCCeEEEEeCCH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVAN----KKSQLKVYMLMRDP  162 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~----aG~~~~V~l~~r~~  162 (420)
                      ..++|.|||+|..|.-+|..|++    .|  .+|+++.+.+
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g--~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEecccc
Confidence            35799999999999999988864    35  7999987653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.14  E-value=0.36  Score=41.40  Aligned_cols=31  Identities=35%  Similarity=0.418  Sum_probs=28.3

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -|.|||+|.-|...|..+++.|  .+|.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G--~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFD--KKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGC--CCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence            5899999999999999999999  899999843

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.96  E-value=0.78  Score=40.32  Aligned_cols=39  Identities=10%  Similarity=-0.057  Sum_probs=32.2

Q ss_pred             EEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       130 I~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      ..|-|+ +.+|.++|..|++.|  ++|.+.+|+.+..+++.+
T Consensus         3 AlVTGas~GiG~aiA~~la~~G--a~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAG--HTVACHDESFKQKDELEA   42 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTT--CEEEECCGGGGSHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh
Confidence            456675 559999999999999  999999998877776654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.89  E-value=0.5  Score=40.82  Aligned_cols=100  Identities=10%  Similarity=0.003  Sum_probs=61.6

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCC------CCCCCC----CCCceEE-eCCHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR------YFPEQK----LPENVIA-TTDAK  194 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~------~l~~~~----l~~~i~a-~td~~  194 (420)
                      ...||..+|+|.  +..+..|++.|  ++|+.+|.++..++..++......      ..+...    ...++.. ..|..
T Consensus        45 ~~~rvLd~GCG~--G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          45 SGLRVFFPLCGK--AVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CSCEEEETTCTT--CTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCEEEEeCCCC--cHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            456999999999  36788899998  999999999988877665432100      000000    0112222 22322


Q ss_pred             Hh----ccCCcEEEE-----ccChhhHHHHHHHhhhcCCCCCeE
Q 014700          195 TA----LLGADYCLH-----AMPVQFSSSFLEGISDYVDPGLPF  229 (420)
Q Consensus       195 ea----l~~aDiVIl-----aVp~~~l~~vl~~i~~~l~~~~iV  229 (420)
                      +.    ....|+|+.     +++....+.+++++...++|+..+
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence            21    123466663     345566777888888888887654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.77  E-value=0.52  Score=41.34  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHH
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~  170 (420)
                      .+.|.|-|+ +-+|.++|..|++.|..+.|.+.+|+.+.++++.+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            367778785 89999999999999832468888999887666654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.77  E-value=0.4  Score=41.72  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.3

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~  163 (420)
                      .||.|.|+ |.+|.++|..|+++|  ++|.+.+|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G--~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNG--YTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCch
Confidence            47889995 999999999999999  99999998753

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.75  E-value=0.32  Score=42.73  Aligned_cols=42  Identities=12%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             CCCeEEEEcc-cHHHHHHHHHHHh---cCCCCeEEEEeCCHHHHHHHH
Q 014700          126 RTNKVVVLGG-GSFGTAMAAHVAN---KKSQLKVYMLMRDPAVCQSIN  169 (420)
Q Consensus       126 ~~mkI~IIGa-GamG~alA~~La~---aG~~~~V~l~~r~~~~~~~i~  169 (420)
                      +|++|.|-|+ +-+|.++|..|++   .|  ++|++.+|+++.++.+.
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g--~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPP--QHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCC--SEEEEEESCTTSCHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH
Confidence            3678999996 8899999999864   56  89999999987665554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.54  E-value=0.88  Score=40.03  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~  167 (420)
                      .+++.|-| .+.+|.++|..|++.|  ++|.+.+|+++..+.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~   44 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREG--ALVALCDLRPEGKEV   44 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSTTHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHH
Confidence            45677778 5899999999999999  999999999865443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.31  Score=43.66  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .+||.|.|+ |.+|++++..|.++|  +.|++.++.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g--~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRG--DVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCT--TEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCc--CEEEEecCc
Confidence            469999995 999999999999998  888776543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.35  E-value=2.6  Score=36.61  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             EEEc-ccHHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEcc-
Q 014700          131 VVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM-  207 (420)
Q Consensus       131 ~IIG-aGamG~alA~~La~aG~~~~V~l~-~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIlaV-  207 (420)
                      .|-| ++.+|.++|..|++.|  ++|.+. .|+++..+.+.+.                     +++  .+.+++++.. 
T Consensus         5 lITGas~GIG~a~a~~la~~G--a~V~i~~~~~~~~~~~~~~~---------------------~~~--~g~~~~~~~~D   59 (244)
T d1edoa_           5 VVTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQ---------------------IEA--YGGQAITFGGD   59 (244)
T ss_dssp             EETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHH---------------------HHH--HTCEEEEEECC
T ss_pred             EEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHH---------------------HHH--cCCcEEEEeCC
Confidence            3446 5889999999999999  899885 5677666665542                     111  1223333332 


Q ss_pred             --ChhhHHHHHHHhhhcCCCCCeEEEeccCC
Q 014700          208 --PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (420)
Q Consensus       208 --p~~~l~~vl~~i~~~l~~~~iVVs~snGi  236 (420)
                        ....++.+++++...+.+=.++|+.. |+
T Consensus        60 v~~~~~v~~~~~~~~~~~g~iDiLVnnA-g~   89 (244)
T d1edoa_          60 VSKEADVEAMMKTAIDAWGTIDVVVNNA-GI   89 (244)
T ss_dssp             TTSHHHHHHHHHHHHHHSSCCSEEEECC-CC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCcccccc-cc
Confidence              23567778888776665445666654 44

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=1.9  Score=35.91  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             CCeEEEEccc--HHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccC
Q 014700          127 TNKVVVLGGG--SFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (420)
Q Consensus       127 ~mkI~IIGaG--amG~alA~~La~aG~~~~V~l~~r~~-----~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~  199 (420)
                      ..||+++|=|  +|..+++..++.-|  .+|++.....     +..+.+.+....        ....+..++++++++++
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g--~~l~~~~P~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTG--LDLRLVAPQACWPEAALVTECRALAQQ--------NGGNITLTEDVAKGVEG   74 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHC--CEEEEECCGGGCCCHHHHHHHHHHHHH--------TTCEEEEESCHHHHHTT
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcC--CEEEEEechHhhhhHHHHHHHHHHHHh--------cCCceEEEechhhcccc
Confidence            4699999954  79999999999987  8999887642     222222221100        01245678899999999


Q ss_pred             CcEEEEcc
Q 014700          200 ADYCLHAM  207 (420)
Q Consensus       200 aDiVIlaV  207 (420)
                      +|+|..-+
T Consensus        75 aDvvyt~~   82 (183)
T d1duvg2          75 ADFIYTDV   82 (183)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEEe
Confidence            99998754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.18  E-value=0.38  Score=45.30  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=30.1

Q ss_pred             CeEEEEcccHHHHHHHHHHHh------cCCCCeEEEEeCCHH
Q 014700          128 NKVVVLGGGSFGTAMAAHVAN------KKSQLKVYMLMRDPA  163 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~------aG~~~~V~l~~r~~~  163 (420)
                      .-|.|||+|.-|++.|..|++      +|  ++|.++++..+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~G--l~VlllEK~~~   72 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAH   72 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCC--CEEEEEcCCCC
Confidence            479999999999999999997      67  99999998753

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.92  E-value=0.38  Score=41.44  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEE--EeCCHH
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYM--LMRDPA  163 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l--~~r~~~  163 (420)
                      +|-|||.|..|+-+..+|.+.+. ..|.+  ++.|..
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~-~~v~~iainTD~~   38 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGL-KGVEFIAINTDAQ   38 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEEESCHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCC-CCceEEEEcchHH
Confidence            68899999999999999999873 34554  455544

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.83  E-value=0.65  Score=41.48  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +||-|.|+ |-+|+.++..|.++|  |+|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g--~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKG--YRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCC
Confidence            57899995 999999999999998  9999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.73  E-value=0.58  Score=39.30  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -|.|||+|.-|...|..+++.|  .+|.++++.
T Consensus         5 DviIIGgGpAGl~aA~~aar~G--~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLG--LKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEecc
Confidence            5899999999999999999999  899999864

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.22  E-value=1.3  Score=33.86  Aligned_cols=69  Identities=10%  Similarity=-0.059  Sum_probs=47.7

Q ss_pred             CCeEEEEcc----------cHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHh
Q 014700          127 TNKVVVLGG----------GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (420)
Q Consensus       127 ~mkI~IIGa----------GamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~ea  196 (420)
                      .++|||+|+          ..-..-+...|.+.|  .+|.+||+.-..                .....+.....+++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g--~~v~iyDP~v~~----------------~~~~~~~~~~~~l~~~   76 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKD--IKIIIYEPMLNK----------------LESEDQSVLVNDLENF   76 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSS--CEEEEECTTCSC----------------CCTTCCSEECCCHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccc--cceeeecCCcCh----------------hHhccCCEEEeCHHHH
Confidence            357999997          355677888898888  899999874311                0111234566789998


Q ss_pred             ccCCcEEEEccChhhHH
Q 014700          197 LLGADYCLHAMPVQFSS  213 (420)
Q Consensus       197 l~~aDiVIlaVp~~~l~  213 (420)
                      +..+|+||+......+.
T Consensus        77 ~~~sDiII~~~~~~~~~   93 (108)
T d1dlja3          77 KKQANIIVTNRYDNELQ   93 (108)
T ss_dssp             HHHCSEEECSSCCGGGG
T ss_pred             HhhCCEEEEcCCchHHH
Confidence            89999888776655443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.84  E-value=0.48  Score=39.98  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      .+||.|+|+ |.+|..+...|.++|....|....|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            479999997 99999999999999821155555554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=81.84  E-value=3.2  Score=36.56  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhc--cCCcEE
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYC  203 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal--~~aDiV  203 (420)
                      ..++|.=+|+|.-.  ++..+++.|  .+|+.+|.+++.++..+++-..    .+.  ... ....+..+..  ...|+|
T Consensus       120 ~g~~VLDiGcGsG~--l~i~aa~~g--~~V~gvDis~~av~~A~~na~~----n~~--~~~-~~~~d~~~~~~~~~fD~V  188 (254)
T d2nxca1         120 PGDKVLDLGTGSGV--LAIAAEKLG--GKALGVDIDPMVLPQAEANAKR----NGV--RPR-FLEGSLEAALPFGPFDLL  188 (254)
T ss_dssp             TTCEEEEETCTTSH--HHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH----TTC--CCE-EEESCHHHHGGGCCEEEE
T ss_pred             ccCEEEEcccchhH--HHHHHHhcC--CEEEEEECChHHHHHHHHHHHH----cCC--cee-EEeccccccccccccchh
Confidence            34689999999743  445667777  7999999999876655542100    000  111 1233444433  468999


Q ss_pred             EEccChhhHHHHHHHhhhcCCCCCeEE
Q 014700          204 LHAMPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       204 IlaVp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      +...-...+.++++.+...++|+..++
T Consensus       189 ~ani~~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         189 VANLYAELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccccccHHHHHHHHHHhcCCCcEEE
Confidence            988777888888888988888876654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.78  E-value=0.69  Score=41.80  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             CeE-EEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCH
Q 014700          128 NKV-VVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI-~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~  162 (420)
                      +|| -|.| +|-+|+.++..|.++|  |+|+.++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g--~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKG--YEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCc--CEEEEEECCC
Confidence            589 4778 5999999999999998  9999999864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.76  E-value=0.65  Score=40.66  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=28.8

Q ss_pred             eEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       129 kI~IIGaGamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      -+.|||+|.-|...|..+++.|  .+|.+++++
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G--~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHN--AKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            4789999999999999999998  899999975

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=1.2  Score=38.10  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CeEEEEcccHHHHHHHHHHHhcCCCCeEEEE
Q 014700          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYML  158 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~aG~~~~V~l~  158 (420)
                      |||+|+|.+.+|..+...|.++|  |+|..+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~--~~i~~V   29 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEG--HEVVGV   29 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTT--CEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCC--CcEEEE
Confidence            79999999999999999999988  888854

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.51  E-value=0.75  Score=42.49  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CCeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       127 ~mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      .|||-|.|+ |-+|+.++..|.+.+ +++|+++|+
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~-~~~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhC-CCEEEEEec
Confidence            479999995 999999999998643 299999873

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.38  E-value=0.92  Score=39.22  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             CCCeEEEEcccHHHHHHHHHHHhcCC-CCeEEEEeCCHHH
Q 014700          126 RTNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAV  164 (420)
Q Consensus       126 ~~mkI~IIGaGamG~alA~~La~aG~-~~~V~l~~r~~~~  164 (420)
                      ...||.|||.|.-|+-++..|.+.|. +.+...++.|...
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~   53 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQ   53 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHH
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHH
Confidence            35799999999999999999999873 1334445665543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.22  E-value=0.51  Score=42.63  Aligned_cols=33  Identities=30%  Similarity=0.499  Sum_probs=29.6

Q ss_pred             CeEEEEcccHHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 014700          128 NKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP  162 (420)
Q Consensus       128 mkI~IIGaGamG~alA~~La~a--G~~~~V~l~~r~~  162 (420)
                      .+|.|||+|.-|...|..|+++  |  ++|+++++.+
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~--~~~~~~~~~~   85 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSV   85 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCC--CeEEEEEcCC
Confidence            4799999999999999999975  6  9999999865

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=81.16  E-value=1  Score=36.60  Aligned_cols=67  Identities=12%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CCeEEEEcc---cHHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCc
Q 014700          127 TNKVVVLGG---GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (420)
Q Consensus       127 ~mkI~IIGa---GamG~alA~~La~aG~~~~V~l~~r~~~~~--~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aD  201 (420)
                      ..||++||=   |.+..+++..|++-|  .++.++...+...  +.+...           ....+..++|++++++++|
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g--~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFR--PKLVYLISPQLLRARKEILDE-----------LNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSC--CSEEEEECCGGGCCCHHHHTT-----------CCSCEEEESCGGGTGGGCS
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcC--CeeEEEecccccccchhhccc-----------CCCeEEEEeCHHHHhhcCC
Confidence            579999996   458999999999987  7777665543210  111110           1125677889999999999


Q ss_pred             EEEEc
Q 014700          202 YCLHA  206 (420)
Q Consensus       202 iVIla  206 (420)
                      +|..-
T Consensus        70 vvy~~   74 (153)
T d1pg5a2          70 VLYVT   74 (153)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            98754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.15  E-value=0.8  Score=41.13  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             CeEEEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCC
Q 014700          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD  161 (420)
Q Consensus       128 mkI~IIGa-GamG~alA~~La~aG~~~~V~l~~r~  161 (420)
                      +++-|.|+ |-+|+.++..|.+.|  |+|+.++|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g--~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKG--YEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCc--CEEEEEECC
Confidence            56777885 999999999999998  999999985

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.09  E-value=1.4  Score=38.37  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             eccccccccccchhh--------cCCCeEEEEcccHHH--HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCC
Q 014700          110 RWSRTWRSKAKTDIL--------ERTNKVVVLGGGSFG--TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP  179 (420)
Q Consensus       110 ~~~~~~~~~~~~~~~--------~~~mkI~IIGaGamG--~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~  179 (420)
                      +|+| +++|....++        ...++|.=+|+|.-.  ..+|...-..|   .|+.+|.+++.++.+.+.-...   +
T Consensus        50 ~w~p-~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G---~V~aVD~s~~~l~~a~~~a~~~---~  122 (227)
T d1g8aa_          50 IWNP-NRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEER---R  122 (227)
T ss_dssp             ECCT-TTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSC---T
T ss_pred             EECC-CccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCC---EEEEEeCcHHHHHHHHHHHHhc---C
Confidence            4887 4555543332        235799999986644  33444443444   8999999998887776542110   0


Q ss_pred             CCCCCCceEE-eCCHH---HhccCCcEEEEccCh-hhHHHHHHHhhhcCCCCCeEEEe
Q 014700          180 EQKLPENVIA-TTDAK---TALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISL  232 (420)
Q Consensus       180 ~~~l~~~i~a-~td~~---eal~~aDiVIlaVp~-~~l~~vl~~i~~~l~~~~iVVs~  232 (420)
                      ..   ..+.. ..+++   .....+|+|+.-++. .+...+++++...++++-.++.+
T Consensus       123 ~~---~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         123 NI---VPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             TE---EEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cc---eEEEEECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            00   00110 01111   123567888888774 45677788888888887765443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.07  E-value=1.2  Score=37.07  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=56.4

Q ss_pred             CCeEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEE
Q 014700          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (420)
Q Consensus       127 ~mkI~IIG-aGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIl  205 (420)
                      ..+|.|-| +|.+|++..+.....|  .+|+...+++++.+.+++.|..............+.. .+    -+..|+||=
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~-~~----~~gvD~vid  104 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRP-LD----KQRWAAAVD  104 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHTTCSEEEECC----------CC----SCCEEEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHHHHHHHhcccceeeecchhHHHHHHH-hh----ccCcCEEEE
Confidence            46799999 5999998777777777  8999999998888888876643211000000000000 00    136799999


Q ss_pred             ccChhhHHHHHHHhhh
Q 014700          206 AMPVQFSSSFLEGISD  221 (420)
Q Consensus       206 aVp~~~l~~vl~~i~~  221 (420)
                      ++-...+...+..+.+
T Consensus       105 ~vgg~~~~~~l~~l~~  120 (176)
T d1xa0a2         105 PVGGRTLATVLSRMRY  120 (176)
T ss_dssp             CSTTTTHHHHHHTEEE
T ss_pred             cCCchhHHHHHHHhCC
Confidence            9987777776666554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.74  E-value=3.1  Score=35.79  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             EEEcc-cHHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 014700          131 VVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (420)
Q Consensus       131 ~IIGa-GamG~alA~~La~aG~~~~V~l~~r~~~~  164 (420)
                      .|-|+ +.+|.++|..|+++|  ++|.+.+|+.+.
T Consensus         5 lVTGas~GIG~aia~~la~~G--~~Vvi~~r~~~~   37 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQG--FRVVVHYRHSEG   37 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHH
T ss_pred             EEeCCCCHHHHHHHHHHHHCC--CEEEEEECCchH
Confidence            45564 669999999999999  999999988543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=80.29  E-value=1  Score=39.95  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCeEEEEcccHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHHhcCCCCCCCCCCCCCceEEeCCHHHhccCCcEEEEc
Q 014700          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (420)
Q Consensus       127 ~mkI~IIGaGamG~alA~~La~aG~~~~V~l~~r~~~~~~~i~~~g~~~~~l~~~~l~~~i~a~td~~eal~~aDiVIla  206 (420)
                      .+||+|||.  +  .+...+.+.|  .++++++|++..       +              .......++.+..||+||+.
T Consensus       122 g~kV~vIG~--~--P~v~~l~~~~--~~~~VlE~~p~~-------g--------------d~p~~~~~~lLp~aD~viiT  174 (251)
T d2h1qa1         122 GKKVGVVGH--F--PHLESLLEPI--CDLSILEWSPEE-------G--------------DYPLPASEFILPECDYVYIT  174 (251)
T ss_dssp             TSEEEEESC--C--TTHHHHHTTT--SEEEEEESSCCT-------T--------------CEEGGGHHHHGGGCSEEEEE
T ss_pred             CCEEEEEec--c--hhHHHHHhcC--CcEEEEeCCCCC-------C--------------CCCchHHHHhhhcCCEEEEE
Confidence            479999985  4  5666777777  899999998631       1              01122456788999999986


Q ss_pred             cChhhHHHHHHHhhhcCCCCCeEE
Q 014700          207 MPVQFSSSFLEGISDYVDPGLPFI  230 (420)
Q Consensus       207 Vp~~~l~~vl~~i~~~l~~~~iVV  230 (420)
                      =- .-+-..++.|..+.++...+|
T Consensus       175 Gs-TlvN~Tl~~LL~~~~~a~~vv  197 (251)
T d2h1qa1         175 CA-SVVDKTLPRLLELSRNARRIT  197 (251)
T ss_dssp             TH-HHHHTCHHHHHHHTTTSSEEE
T ss_pred             ec-hhhcCCHHHHHHhCCcCCEEE
Confidence            33 333344555556555554444

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=80.13  E-value=0.85  Score=40.64  Aligned_cols=30  Identities=17%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             eEEEEc-ccHHHHHHHHHHHhcCCCCeEEEEeC
Q 014700          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR  160 (420)
Q Consensus       129 kI~IIG-aGamG~alA~~La~aG~~~~V~l~~r  160 (420)
                      ||.|.| .|-+|+.+...|.++|  ++|+.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g--~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQG--IDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCc--CEEEEEEC
Confidence            788998 5999999999999998  99999873