Citrus Sinensis ID: 014710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Secondary Structure (PSIPRED)
cccccccccEEEEEccEEEEEcccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEcccEEEEEccHHHccHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEccHHHcHcccEEccccEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEEEEcccccHHHHcccHHccHHHHHHHccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfsfhvsgeviisqepyvcvpnnsssisrcdgcfassnlkkcsacQVVWycgsncqkldwkLHRLECQVLSrldkekrksvtPSIRLMLKLYLRRKlqndnvipstttdNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTicnselrplgtglypVISIinhsclpnavlVFEGRLAVVRAVQhvpkgaegqfddiQESAIlegyrckddgcsgfllrdsddkgftcqqcglvrsKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLtipvyqrvypqfhpllglqyytcgklewflGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Flexible Loop (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQvlsrldkekrksvtpsiRLMLKLYLRrklqndnvipstttDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHvpkgaegqfddIQESAILEGYRCKDDGCSGFLlrdsddkgftCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAqaeasyklsskde
Low Complexity Region (SEG)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIrlmlklylrrklQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Disordered region (IsUnstruct)
****HVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL****************
Disordered Region (DISOPRED)
*FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE***K******
Disordered Region (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA*************
Disordered Region (DISPRO)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q7XJS0	480	Histone-lysine N-methyltr	yes	no	0.969	0.847	0.617	1e-165
Q8R5A0	433	N-lysine methyltransferas	yes	no	0.916	0.889	0.267	7e-36
Q7M6Z3	433	N-lysine methyltransferas	yes	no	0.916	0.889	0.267	2e-35
E1C5V0	436	N-lysine methyltransferas	no	no	0.935	0.901	0.246	8e-35
Q0P585	433	N-lysine methyltransferas	yes	no	0.914	0.886	0.252	1e-32
Q7ZXV5	430	N-lysine methyltransferas	N/A	no	0.909	0.888	0.260	2e-32
Q9NRG4	433	N-lysine methyltransferas	yes	no	0.909	0.882	0.253	5e-32
C3RZA1	433	N-lysine methyltransferas	yes	no	0.909	0.882	0.251	5e-32
Q5BJI7	435	N-lysine methyltransferas	yes	no	0.897	0.866	0.260	6e-31
Q6GN68	430	N-lysine methyltransferas	N/A	no	0.909	0.888	0.255	2e-30

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 273/442 (61%), Positives = 348/442 (78%), Gaps = 35/442 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSC PNAVLVFE ++AVVRA+ ++ K +E                               
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+E
Sbjct: 334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWRE 393

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG 
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGI 453

Query: 393 NSPFMKELILKLEEAQAEASYK 414
           ++PFMKEL  KLEEA+AEASYK
Sbjct: 454 STPFMKELSAKLEEARAEASYK 475

Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8R5A0|SMYD2_MOUSE N-lysine methyltransferase SMYD2 OS=Mus musculus GN=Smyd2 PE=1 SV=1

 Score =  152 bits (383), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 206/422 (48%), Gaps = 37/422 (8%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +  L +    S T  +RL  ++  ++K+  +     T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVLGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVREFESHLD 139

Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y  +D   
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTED--- 249

Query: 239 SGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCG 286
               LRDS      C++C      ++K E++K++S     + + +               
Sbjct: 250 RNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAK 309

Query: 287 NHQEVVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343
           +++      ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403
           Y + YP +   +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429

Query: 404 LE 405
           +E
Sbjct: 430 IE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7M6Z3|SMYD2_RAT N-lysine methyltransferase SMYD2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 205/422 (48%), Gaps = 37/422 (8%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +    +    S T  +RL  ++  ++K+  +     T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVFGENWNPSET--VRLTARILAKQKMHPER----TPSEKLLAVREFESHLD 139

Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y  +D   
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTED--- 249

Query: 239 SGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCG 286
               LRDS      C++C      ++K EI+K+++     + + +               
Sbjct: 250 RNDRLRDSYFFTCECRECTTKDKDKAKVEIRKLSNPPQAEAIRDMVRYARNVIEEFRRAK 309

Query: 287 NHQEVVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343
           +++      ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403
           Y + YP +   +   +   G+L   L +     K++ +A+ I+ I HG + P++ E+  +
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEIAHGKDHPYISEIKQE 429

Query: 404 LE 405
           +E
Sbjct: 430 IE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1

 Score =  148 bits (373), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 193/409 (47%), Gaps = 16/409 (3%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ S   Y  V   S   S CDGCFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 33  GELLFSCPAYTAVLTVSERGSHCDGCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 92

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 93  CAAMCAFGQNWNPSET--VRLTARILAKQKIHPER----TQSEKLLAVKEFESHLDKLDN 146

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+   IA L +   +  E   N  +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 147 EKRELIQNDIAALHHFYSKHMEYPDNAALVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 206

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE--GQFDDIQESAILEGYRCKDD-----G 237
           ++NHSC PN ++ ++G LA VRAV+ +  G E    + D+         R +D       
Sbjct: 207 LMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCD 266

Query: 238 CSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKM 297
           C    +++ D +    ++     S E ++ +      + ++           E++   ++
Sbjct: 267 CRECTMKEKDKEKLKIRKLNDPPSAEAVRDMIKYARNVIEEFRRAKHYKPPSELLEICEL 326

Query: 298 IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL 357
                  ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +  
Sbjct: 327 SLDKMGAVFEDSNVYMLHMMYQAMGVCLYVQDWEGALRYGQKIIRPYSKHYPSYSLNVAS 386

Query: 358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406
            +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +LE+
Sbjct: 387 MWLKLGRLYMALENRPAGDKALKKAIAIMEVAHGKDHPYISEIKKELED 435

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0P585|SMYD2_BOVIN N-lysine methyltransferase SMYD2 OS=Bos taurus GN=SMYD2 PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 200/416 (48%), Gaps = 32/416 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   S   + C+ CFA    L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVSERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKRDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLR 244
           ++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       LR
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTED---RNDRLR 255

Query: 245 DSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVV 292
           DS      CQ+C      ++K EI+K+       + + +               +++   
Sbjct: 256 DSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAETIRDMVRYARNVIEEFRRAKHYKSPS 315

Query: 293 STYKMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
              ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP
Sbjct: 316 ELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYP 375

Query: 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
            +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 376 LYSLNVASMWLKLGRLYMGLENKAAGERALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7ZXV5|SMY2A_XENLA N-lysine methyltransferase SMYD2-A OS=Xenopus laevis GN=smyd2-a PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 202/418 (48%), Gaps = 36/418 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ +   Y  V  ++   + CD CFA    L KC  C+  +YC  +CQK DW +H+LE
Sbjct: 28  GELLFTCPAYTYVLTDTERGNHCDFCFARKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K Q +     T ++ +  V+   +H+S +D 
Sbjct: 88  CSAMCSYGQNWCPSET--VRLTARILAKQKTQTER----TPSETFLSVKEFESHLSKLDN 141

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L     +    + N  +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 142 EKKELIESDIAALHRFYSKNLHYTDNAALVFLFAQVNCNGFTIEDEELSHLGSAIFPDVA 201

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLR 244
           ++NHSC PN ++ F+G +A +RAVQ +  G     D++  S I   Y  +D        R
Sbjct: 202 LMNHSCCPNIIVTFKGTVAEIRAVQEIHAG-----DEVFTSYIDLLYPTEDRN-----DR 251

Query: 245 DSDDKGFT--CQQCGLVR---SKEEIKKIASEVNILSKKTL---------ALTSCGNHQE 290
             D   FT  C++C   +   +K EI+K++   +  + K +               +++ 
Sbjct: 252 LMDSYFFTCDCRECSTKQKDPAKLEIRKLSDPPSHQTVKDMIKYARNIVEEFRRAKHYKT 311

Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
                +M E    K+   F   +V ++    + + + + L++W  AL Y +  I  Y + 
Sbjct: 312 PSELLEMCELSLDKMGSVFVDSNVYMLHMMYQAMGVCLYLQEWDGALKYGEKIIKPYSKH 371

Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
           YP +   +   +   G+L   L  T    K++ +A+ I++I HG +  ++ E+  +LE
Sbjct: 372 YPAYSLNVASMWLKLGRLYMGLEKTTIGTKALKKALAIMQIAHGPDHHYIAEIKKELE 429

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 200/418 (47%), Gaps = 36/418 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR--- 253

Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
           LRDS      CQ+C      ++K EI+K++      + + +               +++ 
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313

Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
                ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  Y + 
Sbjct: 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKH 373

Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
           YP +   +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|C3RZA1|SMYD2_PIG N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 202/418 (48%), Gaps = 36/418 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGSXIFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTED---RNDR 253

Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
           LRDS      CQ+C      ++K EI+K+       + + +               +++ 
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313

Query: 291 VVSTYKMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
                ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q  I  Y + 
Sbjct: 314 PSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKH 373

Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
           YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 199/426 (46%), Gaps = 49/426 (11%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ +   Y  V   +    RC+ CF     L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLVFACPAYAYVLTVNERGGRCECCFTRKEGLSKCGKCKQAYYCNVECQRGDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL+ ++ L++K Q +     T ++    +  L AH+  +D 
Sbjct: 90  CSAMCAYGENWCPSET--VRLVARIILKQKHQTER----TPSERVLTLRELEAHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK  +    IA L +     L +P+ +   + E  +++ CN  TI + EL  LG+ L+P 
Sbjct: 144 EKNEMNDTDIAALHHFYSRHLDFPDNAA--LTELIAQVNCNGFTIEDEELSHLGSALFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
           ++++NHSC PN ++ ++G +A VRAVQ +        ++I  S I   Y  +D       
Sbjct: 202 VALMNHSCSPNVIVTYKGTVAEVRAVQEI-----NPEEEIFNSYIDLLYPTED---RIER 253

Query: 243 LRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 302
           L+DS      C++C   +SK+E K     + I  K ++        Q V+    +IE+ +
Sbjct: 254 LKDSYFFNCDCKEC-TSKSKDEAK-----MEIRQKLSIPPEEEEIKQMVIYARNVIEEFR 307

Query: 303 KKLYHPFSVNLMQ----TREKLIKILME------------------LEDWKEALAYCQLT 340
           +  ++     L++    + EK+  I  E                  ++DW  A+ Y +  
Sbjct: 308 RAKHYKTPSELLEICELSMEKMGAIFAETNVYMLHMMYQAMGVCLYMQDWDGAMKYGEKI 367

Query: 341 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 400
           I  Y   YP +   +   Y   G+L   L      +K++ +A+ I+ I HG + P++ E+
Sbjct: 368 IHPYSVHYPPYSLNVASMYLKLGRLYLGLEKRTQGVKALKKALAIMDIAHGKDHPYIDEI 427

Query: 401 ILKLEE 406
             ++EE
Sbjct: 428 KKEMEE 433

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q6GN68|SMY2B_XENLA N-lysine methyltransferase SMYD2-B OS=Xenopus laevis GN=smyd2-b PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 202/418 (48%), Gaps = 36/418 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ S   Y  V  ++   + CD CF     L KC  C+  +YC  +CQK DW +H+LE
Sbjct: 28  GELLFSCPAYTYVLTDNERGNHCDFCFTRKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K Q +     T ++ +  V+   +H+S +D 
Sbjct: 88  CSSMCSSGQNWCPSET--VRLTARILAKQKTQTER----TASERFMSVKEFESHLSKLDN 141

Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIAEN-FSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+   I+ L     +      N   E  F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 142 EKKELIENDISALHRFYSKNVHNCDNAALEFLFAQVNCNGFTIEDEELSHLGSAIFPDVA 201

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLR 244
           ++NHSC PN ++ ++G +A VRAVQ +  G E     +  S I   Y  +D       L+
Sbjct: 202 LMNHSCCPNVIVTYKGTVAEVRAVQEIHAGEE-----VFTSYIDLLYPTED---RNDRLK 253

Query: 245 DSDDKGFTCQQCGLVR---SKEEIKKIASEVNILSKKTLALTSCGNHQEV--VSTYKMIE 299
           DS      C++C   +   +K E++K++   +  + + +   +    +E      YK   
Sbjct: 254 DSYFFSCDCRECSTKQKDPAKLELRKLSDPPSPQTVRDMITYARNVVEEFRRAKHYKTPS 313

Query: 300 KL----------QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
           +L             ++   +V ++    + + + + ++DW+ AL Y +  I  Y + YP
Sbjct: 314 ELLEICELSLDKMGSVFVDSNVYMLHMMYQAMGVCLYMQDWEGALKYGEKIIKPYSKHYP 373

Query: 350 QFHPLLGLQYYTCGKLEWFLGDTENAI--KSMTEAVEILRITHGTNSPFMKELILKLE 405
            +   +   +   G+L  ++G  +N I  K++ +A+ I+ I HG +  ++ E+  +LE
Sbjct: 374 AYSLNVASMWLKLGRL--YMGLEKNTIGTKALKKALAIMEIAHGPDHYYIAEIKKELE 429

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
302141868	480	unnamed protein product [Vitis vinifera]	0.980	0.858	0.707	0.0
255545512	482	protein with unknown function [Ricinus c	0.980	0.854	0.704	0.0
225459467	477	PREDICTED: histone-lysine N-methyltransf	0.973	0.857	0.705	0.0
224082230	458	SET domain protein [Populus trichocarpa]	0.933	0.855	0.679	1e-177
388518229	477	unknown [Medicago truncatula]	0.964	0.849	0.664	1e-176
449445136	482	PREDICTED: histone-lysine N-methyltransf	0.983	0.856	0.667	1e-174
357461631	511	Histone-lysine N-methyltransferase ASHR1	0.961	0.790	0.614	1e-168
356507670	484	PREDICTED: histone-lysine N-methyltransf	0.978	0.849	0.665	1e-167
297836508	483	hypothetical protein ARALYDRAFT_319740 [	0.973	0.846	0.621	1e-164
30680137	480	histone-lysine N-methyltransferase ASHR1	0.969	0.847	0.617	1e-163

>gi|302141868|emb|CBI19071.3| unnamed protein product [Vitis vinifera]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/448 (70%), Positives = 372/448 (83%), Gaps = 36/448 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEK
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLILQWP+I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMANLVNLILQWPDINVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSCLPN+VLVFE RLAVVRAVQH+PKG E                               
Sbjct: 214 HSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               GQ+DDIQESAILEGYRCKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+
Sbjct: 274 CRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASEL 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             LS K   ++S  ++ E  S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ 
Sbjct: 334 KPLSDKA-TMSSSSHYVEATSIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRA 392

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+LTIPVYQRVYP FHPLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGT
Sbjct: 393 ALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGT 452

Query: 393 NSPFMKELILKLEEAQAEASYKLSSKDE 420
           N+PFMKEL+ KLEEA+AEAS+K SSKD+
Sbjct: 453 NTPFMKELLFKLEEARAEASHKRSSKDK 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545512|ref|XP_002513816.1| protein with unknown function [Ricinus communis] gi|223546902|gb|EEF48399.1| protein with unknown function [Ricinus communis]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/447 (70%), Positives = 370/447 (82%), Gaps = 35/447 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYVCVPNNS++ SRCD CF+SSN+KKCSACQV WYCGS+CQKL+WKLHR+EC
Sbjct: 34  GEVIISQEPYVCVPNNSATESRCDRCFSSSNVKKCSACQVAWYCGSSCQKLEWKLHRIEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + LS+LDK++RK VTPSIRLM++L +RRKLQ++ +I ST TDNY LVEALVAHM DIDEK
Sbjct: 94  EALSKLDKDRRKYVTPSIRLMVRLLIRRKLQSEKIISSTATDNYDLVEALVAHMKDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLIL+WP+++I EIAENFSKLACNAHTIC+SELRPLGTGLYPV+SIIN
Sbjct: 154 QLVLYAQMANLVNLILRWPDVNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSCLPNAVLVF+GRLAVV  VQH+PKG+E                               
Sbjct: 214 HSCLPNAVLVFDGRLAVVHTVQHIPKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               G  DDIQESAILEGYRCKD+ C+GFLLRDSDD+GF CQQCGL+RSKEE+KK A+E+
Sbjct: 274 CIKMGLLDDIQESAILEGYRCKDNRCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEI 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
              S K     S GN QE VS YK+IEKLQ+KL HPFS +LMQTREKL+K+LMELEDW E
Sbjct: 334 KATSDKASKSISSGNLQEAVSIYKLIEKLQRKLCHPFSTSLMQTREKLLKMLMELEDWGE 393

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL+YC+LTIPVYQRVYP+FHPLLGLQY++CGKLEW LGDTE AIKS+T+A+++LRITHGT
Sbjct: 394 ALSYCKLTIPVYQRVYPEFHPLLGLQYFSCGKLEWLLGDTEAAIKSLTKALDVLRITHGT 453

Query: 393 NSPFMKELILKLEEAQAEASYKLSSKD 419
            +PFMKEL++KLEEA+AE SY  +S D
Sbjct: 454 KTPFMKELMMKLEEARAEVSYLRASND 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459467|ref|XP_002284386.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Vitis vinifera]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/448 (70%), Positives = 369/448 (82%), Gaps = 39/448 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEK
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLILQWP+I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMANLVNLILQWPDINVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSCLPN+VLVFE RLAVVRAVQH+PKG E                               
Sbjct: 214 HSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               GQ+DDIQESAILEGYRCKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+
Sbjct: 274 CRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASEL 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             LS K    +S     +  S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ 
Sbjct: 334 KPLSDKATMSSS----SQATSIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRA 389

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+LTIPVYQRVYP FHPLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGT
Sbjct: 390 ALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGT 449

Query: 393 NSPFMKELILKLEEAQAEASYKLSSKDE 420
           N+PFMKEL+ KLEEA+AEAS+K SSKD+
Sbjct: 450 NTPFMKELLFKLEEARAEASHKRSSKDK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082230|ref|XP_002306611.1| SET domain protein [Populus trichocarpa] gi|222856060|gb|EEE93607.1| SET domain protein [Populus trichocarpa]

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/446 (67%), Positives = 353/446 (79%), Gaps = 54/446 (12%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+ QEPYVCVPNNSS++SRCDGCFAS +LKKCSACQVVWYCGS CQK +WKLHRLEC
Sbjct: 34  GEVILRQEPYVCVPNNSSTVSRCDGCFASESLKKCSACQVVWYCGSTCQKSEWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KEKRK+VTPSIRLM++LYLRRKLQN+                      D+DEK
Sbjct: 94  NALSRLEKEKRKAVTPSIRLMVRLYLRRKLQNE---------------------MDLDEK 132

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLV+ ILQWPEI++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPV+SIIN
Sbjct: 133 QLVLYAQMANLVHFILQWPEINLKEIAENFSKLACNAHTICDCELRPLGTGLYPVVSIIN 192

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ----------------------------- 218
           HSC+PNAVL FEG+ +VVRAV+H+P+GAE                               
Sbjct: 193 HSCMPNAVLTFEGKSSVVRAVEHIPEGAEVSIAYIDTAGSTMTRQKALKEQYFFTCTCPR 252

Query: 219 ----FDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNI 274
               +DDIQESAILEGYRCKDD C+GFLLRDS+DKGF CQ CGL RSKEE+K+I  E+  
Sbjct: 253 CIKVYDDIQESAILEGYRCKDDRCNGFLLRDSEDKGFICQTCGLRRSKEEVKRIVCEITA 312

Query: 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 334
           +S K L  TS GNH+EV+S YKMIEKLQ +L HPFS++LM+T+E+L+KILMEL DW+EAL
Sbjct: 313 ISDKKLKSTSPGNHEEVISLYKMIEKLQMELCHPFSISLMRTQEELLKILMELGDWREAL 372

Query: 335 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394
           AYC+LTI  YQRVYP+ HPLLGLQYYTCGK+EW LG TE+AIKS+T AV+ILRITHGTNS
Sbjct: 373 AYCRLTITGYQRVYPEPHPLLGLQYYTCGKIEWLLGYTEDAIKSLTRAVDILRITHGTNS 432

Query: 395 PFMKELILKLEEAQAEASYKLSSKDE 420
           PFMKEL++KL+EA AEASY LSSKDE
Sbjct: 433 PFMKELMMKLDEAHAEASYNLSSKDE 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518229|gb|AFK47176.1| unknown [Medicago truncatula]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/447 (66%), Positives = 351/447 (78%), Gaps = 42/447 (9%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAH--- 120
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVA    
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 121 ----------------------------------MSDIDEKQLLLYAQIANLVNLILQWP 146
                                             MSDI E+QL+LYAQ+ANLV+LILQWP
Sbjct: 146 IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQWP 205

Query: 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 206
           EI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A+VR
Sbjct: 206 EINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREALVR 265

Query: 207 AVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIK 266
           A+QH+PKG EGQ++D++E+AILEGYRCK++ C GFLLR +D K F CQ+CGLVR KEEIK
Sbjct: 266 ALQHIPKGTEGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIK 325

Query: 267 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 326
           +IA+E+  L ++    +S GN  E +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM+
Sbjct: 326 QIATEIKFLLEEASKPSSNGNSHEAISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMK 385

Query: 327 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL 386
           LE W+EALAYC+LTIP+YQRVYP  HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+IL
Sbjct: 386 LEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDIL 445

Query: 387 RITHGTNSPFMKELILKLEEAQAEASY 413
           RITHGT +PF+KEL + L EA+AEAS+
Sbjct: 446 RITHGTKTPFVKELSMMLVEARAEASF 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445136|ref|XP_004140329.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] gi|449502473|ref|XP_004161650.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/448 (66%), Positives = 349/448 (77%), Gaps = 35/448 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GE IISQEPYVCVPNNS   SRCD CFAS NLKKCSAC+V WYC S CQK +WKLHRLEC
Sbjct: 34  GEEIISQEPYVCVPNNSPVESRCDRCFASINLKKCSACKVAWYCSSVCQKSEWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             L+RLDK++ KSVTPSIRLM+KL++RRKLQ++ VIP   TDNY LVE L+ HMS IDEK
Sbjct: 94  DALARLDKDRHKSVTPSIRLMIKLFIRRKLQSEKVIPMAATDNYKLVEELIDHMSGIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+  LVN ILQWP +++ EIA NFSKLACNAHTIC+SELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMGTLVNFILQWPGMNVKEIAVNFSKLACNAHTICDSELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSCLPNAVLVFEGR AVVRAVQH+P GAE                               
Sbjct: 214 HSCLPNAVLVFEGRTAVVRAVQHIPAGAEVSISYIETAGSTMTRQKTLKENYLFTCTCSR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
                Q D+I+ESAILEGYRC++D C GFLLR+SDD GFTCQQCGLVRSKE+IK IAS++
Sbjct: 274 CVKVAQEDEIKESAILEGYRCRNDQCDGFLLRNSDDTGFTCQQCGLVRSKEDIKNIASKI 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             +S +     S  ++ E +  Y+ +EKLQ+ L HP+S++LMQTREKL+KI MELE+W +
Sbjct: 334 KSISDEASTSLSSQSYAEALFMYEKVEKLQRILCHPYSISLMQTREKLLKISMELENWTK 393

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+LTI VYQ++YP  HPLLGLQ+YTCGKLEW LG TE+AIKS T+A +ILRITHGT
Sbjct: 394 ALTYCKLTISVYQKLYPGIHPLLGLQFYTCGKLEWLLGHTEDAIKSYTKAFDILRITHGT 453

Query: 393 NSPFMKELILKLEEAQAEASYKLSSKDE 420
           NS FMKEL+LKLEEA+AEASYKLSS D+
Sbjct: 454 NSSFMKELLLKLEEARAEASYKLSSTDD 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461631|ref|XP_003601097.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] gi|355490145|gb|AES71348.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/482 (61%), Positives = 350/482 (72%), Gaps = 78/482 (16%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAH--- 120
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVA    
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 121 ----------------------------------MSDIDEKQLLLYAQIANLVNLILQWP 146
                                             MSDI E+QL+LYAQ+ANLV+LILQWP
Sbjct: 146 IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQWP 205

Query: 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 206
           EI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A VR
Sbjct: 206 EINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASVR 265

Query: 207 AVQHVPKGAE-----------------------------------GQFDDIQESAILEGY 231
           A+QH+PKG E                                   GQ++D++E+AILEGY
Sbjct: 266 ALQHIPKGTEVLISYIETAGSTVTRQKALREQYLFQCVCPLCSKVGQYEDVRENAILEGY 325

Query: 232 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 291
           RCK++ C GFLLR +D K F CQ+CGLVR KEEIK+IA+E+  L ++    +S  +H E 
Sbjct: 326 RCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASKPSSNDSH-EA 384

Query: 292 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351
           +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM+LE W+EALAYC+LTIP+YQRVYP  
Sbjct: 385 ISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEYWREALAYCKLTIPIYQRVYPAV 444

Query: 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411
           HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+ILRITHGT +PF+KEL + L EA+AEA
Sbjct: 445 HPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPFVKELSMMLVEARAEA 504

Query: 412 SY 413
           S+
Sbjct: 505 SF 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507670|ref|XP_003522587.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Glycine max]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/452 (66%), Positives = 353/452 (78%), Gaps = 41/452 (9%)

Query: 8   GEVIISQEPYVCVPNNSS--SISRCDGCFASSN---LKKCSACQVVWYCGSNCQKLDWKL 62
           GEVIISQEPYVCVPNNSS     RCDGCF + N   L +CS CQ+ +YCG+ CQ+ +WKL
Sbjct: 34  GEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKL 93

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           HRLEC+VLS L K KRKS+TPSIRLML+LYLRRKLQND +IPST  DNY+LVEALVAHMS
Sbjct: 94  HRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMS 153

Query: 123 DIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           DI E+QL+LYAQ+ANLVN IL+WP I+I EIAENFSK ACNAHTIC+SELRP+GTGLYPV
Sbjct: 154 DITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPV 213

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE-------------------------- 216
           ISIINHSCLPN+VLVFEG  A+VRAVQH+P G E                          
Sbjct: 214 ISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFT 273

Query: 217 ---------GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 267
                    GQ+DDIQESAILEGY+CK + C GFLLR +D KGF CQ CGL+R KEEIK+
Sbjct: 274 CTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKR 333

Query: 268 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 327
           I +E+ +LS+   +  S   +QE +S YK IEKLQ +L+HP S+NLM TREK++K LMEL
Sbjct: 334 ITTEIKLLSEDA-SKPSATYYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMEL 392

Query: 328 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 387
           E W EALAYC+LTIP YQRVYP  HPL GLQYYTCGKLEW+LGDTE A+KS+T+AV+ILR
Sbjct: 393 EHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILR 452

Query: 388 ITHGTNSPFMKELILKLEEAQAEASYKLSSKD 419
           ITHGTN+PFMK+L++KLEEA+ EASYK SSK+
Sbjct: 453 ITHGTNTPFMKDLLMKLEEARTEASYKFSSKE 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836508|ref|XP_002886136.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] gi|297331976|gb|EFH62395.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/444 (62%), Positives = 349/444 (78%), Gaps = 35/444 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+S  SRCDGCF ++NLKKCS CQVVWYCGS CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSLESRCDGCFKTNNLKKCSGCQVVWYCGSFCQKSEWKLHRHEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM+KLY++R LQN+ V+P T+TDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVKLYIKRNLQNEKVLPITSTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSC PNAVLVFE ++AVVRA+ ++ K +E                               
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNVGKPHDIEESAILEGYRCSNEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             +S+K  A  S  N Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM+LE W+E
Sbjct: 334 KTVSEKAHASPSAENKQAAIELYKTIEKLQVKLYHSFSITLMRTREKLLKMLMDLEIWRE 393

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HGT
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGT 453

Query: 393 NSPFMKELILKLEEAQAEASYKLS 416
           ++PFMKEL  KLEEA+AEASYKL+
Sbjct: 454 STPFMKELSAKLEEARAEASYKLA 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680137|ref|NP_849969.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] gi|94707144|sp|Q7XJS0.2|ASHR1_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR1; AltName: Full=ASH1-related protein 1; AltName: Full=Protein SET DOMAIN GROUP 37 gi|145651792|gb|ABP88121.1| At2g17900 [Arabidopsis thaliana] gi|330251606|gb|AEC06700.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/442 (61%), Positives = 348/442 (78%), Gaps = 35/442 (7%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAE------------------------------- 216
           HSC PNAVLVFE ++AVVRA+ ++ K +E                               
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 217 ----GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 272
               G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 332
             +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+E
Sbjct: 334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWRE 393

Query: 333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 392
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG 
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGI 453

Query: 393 NSPFMKELILKLEEAQAEASYK 414
           ++PFMKEL  KLEEA+AEASYK
Sbjct: 454 STPFMKELSAKLEEARAEASYK 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
TAIR|locus:2827831	480	SDG37 "SET domain group 37" [A	0.757	0.662	0.504	9.7e-80
MGI|MGI:1915889	433	Smyd2 "SET and MYND domain con	0.914	0.886	0.271	2.4e-35
UNIPROTKB|E1C5V0	436	SMYD2 "N-lysine methyltransfer	0.930	0.896	0.245	8.3e-35
RGD|727785	433	Smyd2 "SET and MYND domain con	0.916	0.889	0.267	1.3e-34
UNIPROTKB|Q0P585	433	SMYD2 "N-lysine methyltransfer	0.919	0.891	0.258	1.1e-32
UNIPROTKB|Q9H7B4	428	SMYD3 "Histone-lysine N-methyl	0.902	0.885	0.288	1.1e-32
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.902	0.885	0.280	1.1e-32
MGI|MGI:1916976	428	Smyd3 "SET and MYND domain con	0.914	0.897	0.272	2.3e-32
UNIPROTKB|C3RZA1	433	SMYD2 "N-lysine methyltransfer	0.914	0.886	0.257	2.9e-32
UNIPROTKB|F1S2Y3	431	SMYD2 "N-lysine methyltransfer	0.914	0.890	0.257	2.9e-32

TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 168/333 (50%), Positives = 223/333 (66%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
             GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct:    34 GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query:    68 QVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             + L+RL+KEKRK VTP+I            QN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct:    94 KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query:   128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
             Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct:   154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query:   188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQ--------ESAILEGY--RCKDDG 237
             HSC PNAVLVFE ++AVVRA+ ++ K +E     I+        + ++ E Y   C+   
Sbjct:   214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query:   238 CSGF-LLRDSDDKGFT-CQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTY 295
             CS F    D ++       +C   +    + +   E   + +K L L S    +++ S  
Sbjct:   274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query:   296 KMIEKLQKKLYHPFSVNLMQTREKLIKILMELE 328
             K +   +K    P S    Q   +L K + +L+
Sbjct:   334 KTVS--EKAPTSP-SAEDKQAAIELYKTIEKLQ 363

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 115/423 (27%), Positives = 200/423 (47%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct:    27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +  L +    S T  +                + P  T     L V    +H+
Sbjct:    86 HKLECSSMVVLGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVREFESHL 138

Query:   122 SDID-EKQLLLYAQIANL---VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L    +  L++P+ S   +   F+++ CN  TI + EL  LG+
Sbjct:   139 DKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGS 196

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDG 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y  +D  
Sbjct:   197 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTEDRN 251

Query:   238 CSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLALTSCGNHQEV--V 292
                  LRDS      C++C      ++K E++K++S     + + +   +    +E    
Sbjct:   252 DR---LRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRA 308

Query:   293 STYKMIEKL-------QKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIP 342
               YK   +L       Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I 
Sbjct:   309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query:   343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402
              Y + YP +   +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  
Sbjct:   369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428

Query:   403 KLE 405
             ++E
Sbjct:   429 EIE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000993 "RNA polymerase II core binding" evidence=IDA

GO:0002039 "p53 binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO

GO:0018027 "peptidyl-lysine dimethylation" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IDA

UNIPROTKB|E1C5V0 SMYD2 "N-lysine methyltransferase SMYD2" [Gallus gallus (taxid:9031)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 101/411 (24%), Positives = 189/411 (45%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++ S   Y  V   S   S CDGCFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct:    33 GELLFSCPAYTAVLTVSERGSHCDGCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 92

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHMSDID 125
             C  +    +    S T  +                + P  T     L V+   +H+  +D
Sbjct:    93 CAAMCAFGQNWNPSETVRLTARILA-------KQKIHPERTQSEKLLAVKEFESHLDKLD 145

Query:   126 -EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVI 183
              EK+ L+   IA L +   +  E   N  +   F+++ CN  TI + EL  LG+ ++P +
Sbjct:   146 NEKRELIQNDIAALHHFYSKHMEYPDNAALVVLFAQVNCNGFTIEDEELSHLGSAIFPDV 205

Query:   184 SIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE--GQFDDIQESAILEGYRCKDD----- 236
             +++NHSC PN ++ ++G LA VRAV+ +  G E    + D+         R +D      
Sbjct:   206 ALMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 265

Query:   237 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 296
              C    +++ D +    ++     S E ++ +      + ++           E++   +
Sbjct:   266 DCRECTMKEKDKEKLKIRKLNDPPSAEAVRDMIKYARNVIEEFRRAKHYKPPSELLEICE 325

Query:   297 M-IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL 355
             + ++K+   ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +
Sbjct:   326 LSLDKMGA-VFEDSNVYMLHMMYQAMGVCLYVQDWEGALRYGQKIIRPYSKHYPSYSLNV 384

Query:   356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406
                +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +LE+
Sbjct:   385 ASMWLKLGRLYMALENRPAGDKALKKAIAIMEVAHGKDHPYISEIKKELED 435

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

RGD|727785 Smyd2 "SET and MYND domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 113/422 (26%), Positives = 198/422 (46%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct:    27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
             H+LEC  +    +    S T  +            +       T ++    V    +H+ 
Sbjct:    86 HKLECSSMVVFGENWNPSETVRLTARILAKQKMHPER------TPSEKLLAVREFESHLD 139

Query:   123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
              +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct:   140 KLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC 238
             ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y  +D   
Sbjct:   198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTEDRND 252

Query:   239 SGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLALTSCGNHQEV--VS 293
                 LRDS      C++C      ++K EI+K+++     + + +   +    +E     
Sbjct:   253 R---LRDSYFFTCECRECTTKDKDKAKVEIRKLSNPPQAEAIRDMVRYARNVIEEFRRAK 309

Query:   294 TYKMIEKL-------QKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343
              YK   +L       Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  
Sbjct:   310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query:   344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403
             Y + YP +   +   +   G+L   L +     K++ +A+ I+ I HG + P++ E+  +
Sbjct:   370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEIAHGKDHPYISEIKQE 429

Query:   404 LE 405
             +E
Sbjct:   430 IE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISO;ISS

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO;ISS

GO:0016571 "histone methylation" evidence=ISO

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO;ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISO;ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISO;ISS

UNIPROTKB|Q0P585 SMYD2 "N-lysine methyltransferase SMYD2" [Bos taurus (taxid:9913)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 109/421 (25%), Positives = 197/421 (46%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   S   + C+ CFA    L KC  C+  +YC   CQ+ DW +
Sbjct:    27 FQV-GDLLFSCPAYAYVLTVSERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPM 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    86 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 138

Query:   122 SDID-EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGL 179
               +D EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ +
Sbjct:   139 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAI 198

Query:   180 YPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCS 239
             +P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D    
Sbjct:   199 FPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTEDRNDR 253

Query:   240 GFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLALTSCGNH 288
                LRDS      CQ+C      ++K EI+K+     A  +  +   ++  +       H
Sbjct:   254 ---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAETIRDMVRYARNVIEEFRRAKH 310

Query:   289 QEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY 344
              +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q  I  Y
Sbjct:   311 YKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPY 370

Query:   345 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL 404
              + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  ++
Sbjct:   371 SKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALKKAIAIMEVAHGKDHPYISEIKQEI 430

Query:   405 E 405
             E
Sbjct:   431 E 431

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0002039 "p53 binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 121/420 (28%), Positives = 192/420 (45%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct:    27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C+ L      K +    S+              D   PS +   YS  + L ++++ + E
Sbjct:    87 CKCLKSC---KPRYPPDSVRLLGRVVFKLM---DGA-PSESEKLYSFYD-LESNINKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLVMTFQHFMREEIQDASQLPPAF--DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE---GQFDDIQESAI----LEGY 231
             LYP IS++NHSC PN  +VF G   ++RAV+ +  G E      D +  S      L   
Sbjct:   197 LYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   232 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 291
              C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q +
Sbjct:   257 YCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAI 312

Query:   292 VSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
             +S+    E+L      P  +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P
Sbjct:   313 ISSNS--ERL------P-DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 363

Query:   350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409
               HP+ G+Q    GKL+   G    A+K++  A +I+R+THG     +++LIL LEE  A
Sbjct:   364 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 423

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISS

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 118/420 (28%), Positives = 191/420 (45%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P     +  S    CD C      L +CS C++  YC + CQK  W  H+ E
Sbjct:    27 GELLFRSDPLAYTVSKGSRGVVCDRCLLGKEKLMRCSQCRIAKYCSAKCQKKAWPDHKRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C+ L    K  +    P                    PS +   YS  + L +++S + E
Sbjct:    87 CKCL----KSCKPRYPPDSVRLLGRVVVKLMDGK---PSESEKLYSFYD-LESNISKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL +  Q  +   +    Q P  S  ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLAMTFQHFMREEIQDASQLPP-SF-DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE---GQFDDIQESAI----LEGY 231
             LYP +S++NHSC PN  +VF G   ++RAV+ +  G E      D +  S      L   
Sbjct:   197 LYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   232 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 291
              C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q +
Sbjct:   257 YCFECDCIRCQTQDKDADMLTGDEQIWKEVQESLKKI-EELKAHWKWEQVLALC---QAI 312

Query:   292 VSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
             +++    E+L      P  +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P
Sbjct:   313 INSNS--ERL------P-DINIYQLKVLDCAMDACINLGMLEEALFYAMRTMEPYRIFFP 363

Query:   350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409
               HP+ G+Q    GKL+   G    A+K++  A +I+++THG     +++LIL LEE  A
Sbjct:   364 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMKVTHGREHSLIEDLILLLEECDA 423

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 113/415 (27%), Positives = 191/415 (46%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P        S    CD C      L +CS C++  YC + CQK  W  HR E
Sbjct:    27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRIAKYCSAKCQKKAWPDHRRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C  L      K +    S+            +     PS +   YS  + L +++S + E
Sbjct:    87 CSCLKSC---KPRYPPDSVRLLGRVIVKLMDEK----PSESEKLYSFYD-LESNISKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL +  Q  +   +    Q P  S  ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLAMTFQHFMREEIQDASQLPP-SF-DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDIQESAILEGYRCKDD 236
             LYP +S++NHSC PN  +VF G   ++RAV+ +  G E    + D+  ++     + +D 
Sbjct:   197 LYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   237 GCSGF-LLR-DSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 294
              C     +R  + DK        ++   E+I K   EV    KK   L +    ++V++ 
Sbjct:   257 YCFECDCIRCQTQDK-----DADMLTGDEQIWK---EVQESLKKIEELKAHWKWEQVLAL 308

Query:   295 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354
              + I           ++  ++  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct:   309 CQAIINSNSNRLPDINIYQLKVLDCAMDACINLGMLEEALFYAMRTMEPYRIFFPGSHPV 368

Query:   355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA 409
              G+Q    GKL+   G    A+K++  A +I+++THG     +++LIL LEE  A
Sbjct:   369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMKVTHGREHSLIEDLILLLEECDA 423

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|C3RZA1 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 109/423 (25%), Positives = 199/423 (47%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +
Sbjct:    27 FQV-GDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPM 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    86 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 138

Query:   122 SDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+
Sbjct:   139 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGS 196

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDG 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D  
Sbjct:   197 XIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTEDRN 251

Query:   238 CSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLALTSCG 286
                  LRDS      CQ+C      ++K EI+K+     A  +  +   ++  +      
Sbjct:   252 DR---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIEEFRRA 308

Query:   287 NHQEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 342
              H +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q  I 
Sbjct:   309 KHYKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQ 368

Query:   343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402
              Y + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  
Sbjct:   369 PYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYISEIKQ 428

Query:   403 KLE 405
             ++E
Sbjct:   429 EIE 431

GO:0010452 "histone H3-K36 methylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S2Y3 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 109/423 (25%), Positives = 199/423 (47%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +
Sbjct:    25 FQV-GDLLFSCPGYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPM 83

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    84 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 136

Query:   122 SDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+
Sbjct:   137 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGS 194

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDG 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D  
Sbjct:   195 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTEDRN 249

Query:   238 CSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLALTSCG 286
                  LRDS      CQ+C      ++K EI+K+     A  +  +   ++  +      
Sbjct:   250 DR---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIEEFRRA 306

Query:   287 NHQEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP 342
              H +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q  I 
Sbjct:   307 KHYKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQ 366

Query:   343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL 402
              Y + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  
Sbjct:   367 PYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYISEIKQ 426

Query:   403 KLE 405
             ++E
Sbjct:   427 EIE 429

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000993 "RNA polymerase II core binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJS0	ASHR1_ARATH	2, ., 1, ., 1, ., 4, 3	0.6176	0.9690	0.8479	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015328001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (480 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
pfam01753	39	pfam01753, zf-MYND, MYND finger	9e-11
pfam00856	113	pfam00856, SET, SET domain	5e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	4e-05

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 56.3 bits (136), Expect = 9e-11
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30 CDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   +  L +CS C+ V+YC   CQK DW  H+ EC
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

>gnl|CDD|216155 pfam00856, SET, SET domain

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 165 HTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAE 216
            +  +SE     TGL  V   INHSC PN  + F     G   VVRA++ +  G E
Sbjct: 52  LSRLDSEYDIDATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEE 107

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 371
           +L      L  +L  L D+ EAL   +  + +  R   + HP          +L   LGD
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGD 61

Query: 372 TENAIKSMTEAVEILR 387
            + A++ + +A+ +  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 176 GTGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAE 216
                 +   INHSC PN  L+F         V+ A++ +  G E
Sbjct: 68  ARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEE 112

Putative methyl transferase, based on outlier plant homologues. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
KOG2084	482	consensus Predicted histone tail methylase contain	99.81
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.51
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.5
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.27
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.16
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.97
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.92
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.75
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.63
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.5
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.44
KOG0553	304	consensus TPR repeat-containing protein [General f	98.42
PRK15359	144	type III secretion system chaperone protein SscB;	98.39
PRK10803	263	tol-pal system protein YbgF; Provisional	98.37
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.29
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.2
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.14
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.14
PF13512	142	TPR_18: Tetratricopeptide repeat	98.1
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.05
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.05
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	98.03
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.99
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.81
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.79
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	97.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.72
PF12688	120	TPR_5: Tetratrico peptide repeat	97.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.66
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.61
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.61
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.53
PRK11189	296	lipoprotein NlpI; Provisional	97.53
PF13371	73	TPR_9: Tetratricopeptide repeat	97.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.4
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.4
PRK10803	263	tol-pal system protein YbgF; Provisional	97.4
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.34
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.32
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.3
KOG4234	271	consensus TPR repeat-containing protein [General f	97.28
COG2940	480	Proteins containing SET domain [General function p	97.27
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.18
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.11
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.1
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.03
PRK15331	165	chaperone protein SicA; Provisional	96.99
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.97
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	96.96
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.92
KOG1125	579	consensus TPR repeat-containing protein [General f	96.91
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	96.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.87
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.87
PRK04841	903	transcriptional regulator MalT; Provisional	96.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.76
PRK12370	553	invasion protein regulator; Provisional	96.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.66
PRK12370	553	invasion protein regulator; Provisional	96.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.63
PF12688	120	TPR_5: Tetratrico peptide repeat	96.61
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.53
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.48
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	96.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.36
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.28
KOG2076	895	consensus RNA polymerase III transcription factor	96.26
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.23
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.23
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.23
PRK04841	903	transcriptional regulator MalT; Provisional	96.19
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.17
PRK15359	144	type III secretion system chaperone protein SscB;	96.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.02
PRK14574	822	hmsH outer membrane protein; Provisional	96.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.01
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.98
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.92
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.86
KOG0547	606	consensus Translocase of outer mitochondrial membr	95.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.81
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.81
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.78
KOG1126	638	consensus DNA-binding cell division cycle control	95.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.74
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.74
PRK11189	296	lipoprotein NlpI; Provisional	95.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.63
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	95.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.54
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.5
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.38
KOG2003	840	consensus TPR repeat-containing protein [General f	95.38
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.34
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.29
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.23
PLN03158	396	methionine aminopeptidase; Provisional	95.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.14
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.14
KOG2076	895	consensus RNA polymerase III transcription factor	95.0
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.88
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.71
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.68
KOG1126	638	consensus DNA-binding cell division cycle control	94.67
KOG1085	392	consensus Predicted methyltransferase (contains a	94.54
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.53
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.52
KOG1585	308	consensus Protein required for fusion of vesicles	94.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.44
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.21
KOG4555	175	consensus TPR repeat-containing protein [Function	94.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	93.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	93.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	93.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	93.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.72
PF13371	73	TPR_9: Tetratricopeptide repeat	93.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.67
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.66
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.61
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.5
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	93.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.3
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.12
PF13428	44	TPR_14: Tetratricopeptide repeat	93.1
KOG2857	157	consensus Predicted MYND Zn-finger protein/hormone	93.02
KOG1128	777	consensus Uncharacterized conserved protein, conta	92.98
KOG0553	304	consensus TPR repeat-containing protein [General f	92.85
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	92.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.68
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.61
PF13428	44	TPR_14: Tetratricopeptide repeat	92.61
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.43
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	92.18
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	92.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.15
KOG1585	308	consensus Protein required for fusion of vesicles	92.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.0
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.9
PRK15331	165	chaperone protein SicA; Provisional	91.71
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.62
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.45
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	91.4
PRK14574	822	hmsH outer membrane protein; Provisional	91.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	91.31
KOG1129	478	consensus TPR repeat-containing protein [General f	91.25
PF13512	142	TPR_18: Tetratricopeptide repeat	91.09
PLN03077	857	Protein ECB2; Provisional	91.04
KOG2003	840	consensus TPR repeat-containing protein [General f	90.79
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.62
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.57
KOG4555	175	consensus TPR repeat-containing protein [Function	90.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	89.73
KOG1125	579	consensus TPR repeat-containing protein [General f	89.56
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.51
KOG0508	615	consensus Ankyrin repeat protein [General function	89.44
PLN03218	1060	maturation of RBCL 1; Provisional	89.39
PLN03218	1060	maturation of RBCL 1; Provisional	89.34
KOG1337	472	consensus N-methyltransferase [General function pr	88.81
KOG1129	478	consensus TPR repeat-containing protein [General f	88.67
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.67
KOG1586	288	consensus Protein required for fusion of vesicles	88.6
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	88.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	88.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	88.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	88.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	88.18
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	87.87
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.57
PF13431	34	TPR_17: Tetratricopeptide repeat	87.47
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	87.12
KOG3785	557	consensus Uncharacterized conserved protein [Funct	87.07
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	86.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	86.77
COG3947	361	Response regulator containing CheY-like receiver a	86.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	86.26
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.14
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	86.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.06
COG4700	251	Uncharacterized protein conserved in bacteria cont	85.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	85.53
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	85.51
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	85.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.0
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.92
PLN03077	857	Protein ECB2; Provisional	84.9
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	84.89
KOG1338	466	consensus Uncharacterized conserved protein [Funct	84.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	84.61
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	84.2
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	83.99
PF13431	34	TPR_17: Tetratricopeptide repeat	83.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	83.77
PRK11906	458	transcriptional regulator; Provisional	83.37
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	82.82
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	82.72
PRK00418	62	DNA gyrase inhibitor; Reviewed	82.68
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	82.49
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.96
COG4700	251	Uncharacterized protein conserved in bacteria cont	81.93
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	81.74
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	81.59
KOG1586	288	consensus Protein required for fusion of vesicles	81.45
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	81.42
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	81.34
PRK01343	57	zinc-binding protein; Provisional	81.33
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	81.28
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	80.52
KOG0508	615	consensus Ankyrin repeat protein [General function	80.5
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.25
KOG4317	383	consensus Predicted Zn-finger protein [Function un	80.23
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	80.23
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	80.07

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.81  E-value=2.9e-18  Score=173.85  Aligned_cols=391  Identities=20%  Similarity=0.264  Sum_probs=242.9

Q ss_pred             CCCCCCCCeeEeeCCceeccCCCCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchhhhccCC
Q 014710            2 FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (420)
Q Consensus         2 ~~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~~~~~~~   81 (420)
                      ..+|++|++|+.|.|++.+|..    ..|..|+.. ....|.+|....+|++.++...|..|+++|.. ........   
T Consensus        31 ~~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---  101 (482)
T KOG2084|consen   31 TQAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECE---  101 (482)
T ss_pred             ecccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhcccccc---
Confidence            3689999999999999999996    556666654 56789999999999887777667788888877 32221110   


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCCchhh--HHHHhhccCCCCHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 014710           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVAHMSDIDEKQ--LLLYAQIANLVNLILQWPEISINEIAENF  157 (420)
Q Consensus        82 ~~~~~l~~r~l~~~~~~~~~~~~~~~~~~~~~--~~~L~~h~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~i~~~~  157 (420)
                      ..........+... .....    ...+.+..  +..+....+......  ...+....................+..++
T Consensus       102 ~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (482)
T KOG2084|consen  102 PLKLVGAPEECLAL-SSLHE----ESREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSHLLLVLAADCISKLF  176 (482)
T ss_pred             chhhccchHHHHHh-hcCCc----cccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhccccchhHHHHHHHHH
Confidence            00000000111000 00000    00111111  111111111111100  00111111100000001111233445556


Q ss_pred             HHhhhcccccccCCCc----ccccchhhhccccCCCCcCCceeEEeCCEEEEEEecCCCCCC-cc--CCCh------HhH
Q 014710          158 SKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EG--QFDD------IQE  224 (420)
Q Consensus       158 ~~~~~N~~~i~~~~~~----~~g~glyp~~s~~NHSC~PN~~~~f~~~~~~vra~r~I~~Ge-e~--~~~~------~~~  224 (420)
                      ..+..|++.+.+....    ..|.|+||..+++||||.||+...|++....+++...+.+++ ++  +|.+      .|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~  256 (482)
T KOG2084|consen  177 PSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQ  256 (482)
T ss_pred             HHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHH
Confidence            6666777766554433    599999999999999999999999999999999999998887 54  3443      355


Q ss_pred             HHHhcC--ccccCCCCCCCc--------------------ccCC-C--CCccccCCCCCccCHHHHHHHHHHHHHHHHHH
Q 014710          225 SAILEG--YRCKDDGCSGFL--------------------LRDS-D--DKGFTCQQCGLVRSKEEIKKIASEVNILSKKT  279 (420)
Q Consensus       225 ~~l~~~--~~C~c~~C~~~~--------------------~~~~-~--~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a  279 (420)
                      ..|...  |.|.|++|..+-                    .+.. .  ...|.|..|........+..........  .+
T Consensus       257 ~~l~~~~~f~c~c~rc~d~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~  334 (482)
T KOG2084|consen  257 KQLRQSKLFSCQCPRCLDPTELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQNE--LL  334 (482)
T ss_pred             HHHhhccceeeecCCCCCCCccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHHHHHHHHHhh--cc
Confidence            555543  899999998421                    0111 1  2479999998876666565544443321  01


Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----------hhcHHHHHHHH--HHhHHHHHHh
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAYC--QLTIPVYQRV  347 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----------~g~~~~A~~~~--~~~l~~~~~~  347 (420)
                      ...       ......+.+...+....+++|.........+..++..          .+.+..+..++  ...+.+++.+
T Consensus       335 ~~~-------~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (482)
T KOG2084|consen  335 DAF-------SDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNLFECRELLKALRDV  407 (482)
T ss_pred             ccC-------ChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHhhhhhHHHHHHHhh
Confidence            111       1112223444455567778877765554444433332          24566677776  8999999999


Q ss_pred             cCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhccc
Q 014710          348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  415 (420)
Q Consensus       348 ~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~~  415 (420)
                      .+..++..++..+.++.....++....++........++....+.++.........+...+....+..
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (482)
T KOG2084|consen  408 KPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGPLA  475 (482)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHh
Confidence            99999999999999999999999999999999999999999999999988888887777766655443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.51  E-value=6.1e-13  Score=131.90  Aligned_cols=134  Identities=18%  Similarity=0.270  Sum_probs=127.6

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      -|..++.++++.+|+.+|++++++.+.++|+.|+.++.++.+|+.+|...|++++|..+|++++.++++++|..||.++.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      .+.+++.++...+++++|..+|++|++|+...+|++|+.+..+...|+....-+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~  380 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM  380 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998885433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.50  E-value=7.4e-13  Score=131.31  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=122.2

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+..+..+|+++.|+.+++.++....+..|-.|+.+....+.++.+|..++++.+|+.+++++|.+.+.++|+.||.+|.
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            45556778999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      .+.+||.+|...|+++||..++++|++|.+..+|..||.+...+..++-+
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877666655

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.27  E-value=3.1e-11  Score=90.30  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=73.4

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ||.++.++.+++.+|...|+|++|++++++++.+ .+.+|+.||.++..+++||.++..+|++++|+.++++|++|.+.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            7899999999999999999999999999999999 88889999999999999999999999999999999999999863

...

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.16  E-value=1.6e-11  Score=104.84  Aligned_cols=51  Identities=41%  Similarity=0.632  Sum_probs=43.5

Q ss_pred             CCCcccccchhhhccccCCCCcCCceeEEe----CCEEEEEEecCCCCCCccCCC
Q 014710          170 SELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEGQFD  220 (420)
Q Consensus       170 ~~~~~~g~glyp~~s~~NHSC~PN~~~~f~----~~~~~vra~r~I~~Gee~~~~  220 (420)
                      ......+.+|||.++|+||||.|||.+.|+    ++.++|+|+|+|++|||+++.
T Consensus       106 ~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is  160 (162)
T PF00856_consen  106 SEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS  160 (162)
T ss_dssp             TTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred             ccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence            334567899999999999999999999998    789999999999999998643

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.97  E-value=1.3e-10  Score=73.07  Aligned_cols=37  Identities=46%  Similarity=1.232  Sum_probs=32.4

Q ss_pred             CccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhc
Q 014710           30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (420)
Q Consensus        30 C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (420)
                      |++|++. .+.+|++|+.++|||++||+.+|..|+.+|
T Consensus         1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            7888885 334999999999999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=98.92  E-value=7.3e-10  Score=89.36  Aligned_cols=46  Identities=30%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             ccchhhhccccCCCCcCCceeEEe--CC--EEEEEEecCCCCCCccCCCh
Q 014710          176 GTGLYPVISIINHSCLPNAVLVFE--GR--LAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       176 g~glyp~~s~~NHSC~PN~~~~f~--~~--~~~vra~r~I~~Gee~~~~~  221 (420)
                      +..++|.++++||||.||+.+.+.  ++  .+.++|+|+|++||||+++|
T Consensus        67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            445899999999999999999975  33  59999999999999998754

Putative methyl transferase, based on outlier plant homologues

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.75  E-value=2.1e-07  Score=80.55  Aligned_cols=124  Identities=15%  Similarity=0.034  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+......|++++|+..+++++.+     .+.+.....++.+++.++...|++++|++++++++.+. ..++..+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~  109 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence            33445566667789999999999999765     34555667789999999999999999999999999763 3334556


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      ..+|..+..+|..+..+|++++|+..+.+|+.+++..+|.+|+.+.++..
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence            77777777777777799999999999999999999999999976655443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.63  E-value=6.5e-07  Score=72.06  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=95.5

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ++.+..+.....+|++++|++.++.++..     +|.++....++..++.++...|++++|+.++++++...     +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            34556667777889999999999998653     57777777888899999999999999999999887543     677


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      +.....++.+|.++..+|++++|..++.++++.     .|+++.+.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~  117 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK  117 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence            777888999999999999999999999999887     577777666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.50  E-value=3e-08  Score=91.34  Aligned_cols=77  Identities=22%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             hhcccccccCCCcccccchhh-hccccCCCCcCCceeEEeC-CEEEEEEecCCCCCCccCCChHhHHHHh-cCccccCCC
Q 014710          161 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEGQFDDIQESAIL-EGYRCKDDG  237 (420)
Q Consensus       161 ~~N~~~i~~~~~~~~g~glyp-~~s~~NHSC~PN~~~~f~~-~~~~vra~r~I~~Gee~~~~~~~~~~l~-~~~~C~c~~  237 (420)
                      .-|-|+|.-+.-.. -.-||. .++++||.|.|||.++-.| +++.|+++|||+|||||+.-|- .+.+. +.-.|.|..
T Consensus       175 g~nDFSvmyStRk~-caqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYg-s~fFG~~N~~CeC~T  252 (453)
T KOG2589|consen  175 GGNDFSVMYSTRKR-CAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYG-SGFFGENNEECECVT  252 (453)
T ss_pred             cCCceeeeeecccc-hhhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeec-ccccCCCCceeEEee
Confidence            35777776544322 345555 5889999999999998877 7899999999999999963221 11121 134788888


Q ss_pred             CC
Q 014710          238 CS  239 (420)
Q Consensus       238 C~  239 (420)
                      |.
T Consensus       253 CE  254 (453)
T KOG2589|consen  253 CE  254 (453)
T ss_pred             cc
Confidence            87

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.45  E-value=1.4e-06  Score=64.79  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=63.8

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  346 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  346 (420)
                      .+...+..+...|++++|++.+++++.+ .+.+++.|+.++.++.+++.++...|++++|+++++++++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            3445566678899999999999999999 77789999999999999999999999999999999999999874

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.44  E-value=3.2e-07  Score=59.31  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      ++..+.+||.++..+|++++|+.++++|+++.+..+|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            467899999999999999999999999999999999999994

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=4.9e-06  Score=75.93  Aligned_cols=118  Identities=19%  Similarity=0.252  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .+.+-.+..+++..++|++|+..|.+++.     |-|.++..+.-   =+.+|.++|.++.|++-|+.+|.+        
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyycN---RAAAy~~Lg~~~~AVkDce~Al~i--------  144 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYCN---RAAAYSKLGEYEDAVKDCESALSI--------  144 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHHH---HHHHHHHhcchHHHHHHHHHHHhc--------
Confidence            34444566777788999999999999987     45777766553   467899999999999999999876        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~  410 (420)
                      .|.....|-.||.+|..+|++++|+..|++|+.|     -|+.+.+++.+....+-..|
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcC
Confidence            6889999999999999999999999999999874     56777666655554444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.39  E-value=1.1e-05  Score=67.78  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+......|++++|+..+++++..        +|.-..++..++.++...|++++|+..+++++..        .|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p   89 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DA   89 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CC
Confidence            3455567778889999999999998653        4445677889999999999999999999998765        46


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .-+..++++|.++..+|++++|+..|++|++     ..|+++.....+.......
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence            6677899999999999999999999999976     5678887776555544443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.37  E-value=7.8e-06  Score=75.62  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=90.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      +..|++++|+..|+.+++.     +|++...-.++..++.+|...|++++|+.++++++..+     ++||.....++++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl  223 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV  223 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence            3468999999999999775     58888888999999999999999999999988876665     7899999999999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      |.++..+|++++|..+|++.++.+     |+++........|
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL  260 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence            999999999999999999776543     4555555555444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.34  E-value=2e-06  Score=91.96  Aligned_cols=126  Identities=18%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ..+|.|.++.+ .-+.+.+...+++..|+.+...+..|+.++...|+..+|+.+++++.-+.+++.|.+||.+...+-+|
T Consensus       943 ~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen  943 LLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred             hcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence            34567777777 66777788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      +...+...+...|+..+.+|+.++...+|++||.+..+..+++.+..
T Consensus      1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred             HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence            99999999999999999999999999999999988776555555533

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.29  E-value=1.1e-05  Score=69.96  Aligned_cols=129  Identities=15%  Similarity=0.105  Sum_probs=95.0

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|+..++++++..     +.++....++..++.++...|++++|+.++++++...... +..+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~  109 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL  109 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence            344556666777899999999999997753     3344456788999999999999999999999988753111 1222


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ..+|..+..++......|++++|+..+.+|+++++...+.++..+.+++.-++.+
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  164 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT  164 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence            3344455555555555677899999999999999999998888877777655543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.29  E-value=4.3e-05  Score=64.00  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      +.++.+...|-.+..+|++++|.++|+.+...        +|.-.+.+.+|+-++...|+|++|+..+.+++.+     .
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~   99 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----K   99 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence            46777888888999999999999998887543        5566677889999999999999999999988544     3


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      +++|   ..++++|..++..|+.++|++.++.|+..-.     ++|....+..+.......+
T Consensus       100 ~ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        100 IDAP---QAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             CCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHh
Confidence            5555   4789999999999999999999999988762     6677776666655554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.20  E-value=7.2e-05  Score=68.60  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=97.5

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +.....|...+..|++++|++.|+.++.     .+|..+....+...++.++.+.+++++|+.++++.+..+     |.|
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~  102 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH  102 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence            3345666777788999999999999976     468888888999999999999999999999999987765     899


Q ss_pred             hHHHHHHHHhhHHHHhhc---------------ChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g---------------~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      |.+..+++.+|..+..++               +...+...+..--.+++..  |+++...+....|..++..+
T Consensus       103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~l  174 (243)
T PRK10866        103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRL  174 (243)
T ss_pred             CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH
Confidence            999999999998875544               2233343333333344443  58888888888887776644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.20  E-value=3.1e-05  Score=75.24  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +..+|...+..|++++|++.|.+++..     .|.+   ..++..++.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            455677788899999999999999864     3555   456788999999999999999999999886        345


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      .+..++.+|.++..+|++++|+..|++|+.+     .|+++.....+..+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~  113 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            5668999999999999999999999999874     46777665544333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.18  E-value=0.00015  Score=64.72  Aligned_cols=131  Identities=20%  Similarity=0.176  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .+.+...|...+..|++.+|++.|+.+...     +|.++..-++...++.++...|++.+|+..+++.+..+     |.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            355677888889999999999999999764     68999999999999999999999999999999887665     77


Q ss_pred             ChHHHHHHHHhhHHHHhhcChH----HHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHh
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTE----NAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~----eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      ||.+..+++.+|..+..+..-.    .-....++|+..++..  -=|+++.+.+....|.+++..+-
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999987653211    1112222333322222  23789999998888888876543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.14  E-value=8.8e-05  Score=61.24  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=86.5

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|+..++.++..     +|.+   ..++..++..+...|++++|..++++++.+        +
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~   81 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------D   81 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C
Confidence            33455566677789999999999888653     3443   466778999999999999999999987765        3


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      |.....++.+|.++...|++++|+.+++++++.     .|+.+....+...+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERAE  129 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHHH
Confidence            556778899999999999999999999999885     456665555444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.14  E-value=3.9e-06  Score=54.07  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ++.++++|+.+|...|++++|+.++++++.++++++|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            367889999999999999999999999999999999999994

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.10  E-value=5.3e-05  Score=62.34  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=77.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ..+..+|...+..|++++|++.++.+.+.     +|..+..-++...|+.+|...+++++|+..+++.+.+     .|.|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h   80 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH   80 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence            34566677778889999999999999664     5888888899999999999999999999998887665     4999


Q ss_pred             hHHHHHHHHhhHHHHhhcC
Q 014710          353 PLLGLQYYTCGKLEWFLGD  371 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~  371 (420)
                      |.+.++++..|.+++.+..
T Consensus        81 p~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CCccHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.07  E-value=2.8e-05  Score=77.14  Aligned_cols=93  Identities=23%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..|..+.+.|+..+|...|.+++.+.     |+|   .++.++|+.+|...|.+++|..++++++.++        |..+
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~a  388 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFA  388 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhh
Confidence            34555666788888888888887653     444   4556788888888888888888888888775        7788


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ....+||.+|-.+|++++|+..|++|++|
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            88888888888888888888888888876

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.06  E-value=7.3e-05  Score=68.20  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=91.9

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ...+..+......|++++|+..+++++..     .|.++....++..++.++...|++++|+..+++++...     +.+
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~  103 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH  103 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence            34455666677789999999999998664     57888888889999999999999999999999987543     567


Q ss_pred             hHHHHHHHHhhHHHHhh--------cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~--------g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      |.+...++.+|.++...        |++++|...++++++.     -|+++.....+..+
T Consensus       104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~  158 (235)
T TIGR03302       104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRM  158 (235)
T ss_pred             CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHH
Confidence            77777888999988865        7889999999988754     45666555444433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.05  E-value=6.7e-05  Score=56.60  Aligned_cols=83  Identities=22%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      +|++++|+..+++++...     |.++ -......++.++...|+|++|+.++++ +..-        +......+.+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence            578999999999998764     3233 333556689999999999999999988 2221        222445556699


Q ss_pred             HHHhhcChHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEA  382 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A  382 (420)
                      .+..+|++++|+++|++|
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999986

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.05  E-value=0.00012  Score=65.47  Aligned_cols=137  Identities=15%  Similarity=0.217  Sum_probs=100.1

Q ss_pred             ccccCCCCCccC--------HHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 014710          250 GFTCQQCGLVRS--------KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLI  321 (420)
Q Consensus       250 ~~~C~~C~~~~~--------~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~  321 (420)
                      .|.|+.||-...        +.+.+.+.+.+....+. ..+....++++|++.|.-++-. -.+.+..+...+.+...+|
T Consensus        48 V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~~-~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlA  125 (214)
T PF09986_consen   48 VWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWKP-RDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLA  125 (214)
T ss_pred             EEECCCCCCcccccccccCCHHHHHHHHHHHHhhccc-CCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHH
Confidence            588999985432        23334433333332221 1333345788999998888765 3556677778889999999


Q ss_pred             HHHHHhhcHHHHHHHHHHhHHHHHHhcCC-CC----hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          322 KILMELEDWKEALAYCQLTIPVYQRVYPQ-FH----PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~h----p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      =+|...|+-+....+.+++++.++..|-. ..    -.-...++-+|.+....|++++|..++.+.+..-..
T Consensus       126 WlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  126 WLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999988752 22    244678899999999999999999999887764443

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=3.7e-06  Score=84.12  Aligned_cols=70  Identities=23%  Similarity=0.320  Sum_probs=46.5

Q ss_pred             cchhhhcc-ccCCCCcCCceeE-E-eCC--EEEEEEecCCCCCCccCCChHhHHHHh-cCc--cccCCCCCCCcccCCC
Q 014710          177 TGLYPVIS-IINHSCLPNAVLV-F-EGR--LAVVRAVQHVPKGAEGQFDDIQESAIL-EGY--RCKDDGCSGFLLRDSD  247 (420)
Q Consensus       177 ~glyp~~s-~~NHSC~PN~~~~-f-~~~--~~~vra~r~I~~Gee~~~~~~~~~~l~-~~~--~C~c~~C~~~~~~~~~  247 (420)
                      ...+-..| ++||||+|||.+. | .++  +|=+-|.++|++||||+++|.= +... +.-  .|.-+.|.|++...++
T Consensus       187 AT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf-~rYGr~AQ~CyCgeanC~G~IGgk~q  264 (729)
T KOG4442|consen  187 ATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF-DRYGRDAQPCYCGEANCRGWIGGKPQ  264 (729)
T ss_pred             ccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc-ccccccccccccCCcccccccCCCCc
Confidence            33443333 6899999999876 3 344  4667999999999999987641 1000 122  3555789999876543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.99  E-value=3.2e-05  Score=76.76  Aligned_cols=97  Identities=14%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .+++...+...+++|.+++|..+|+.++..        .|....+.++|+.+|.++|++++|+..++.+|.+.       
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-------  418 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-------  418 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-------
Confidence            455566677777788888888888877654        45566777777777777777777777777777652       


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                       |..|.++.++|..|-++|+.++|+..|.+|+.
T Consensus       419 -P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  419 -PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ  450 (966)
T ss_pred             -chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence             55555555555555555555555555555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.97  E-value=5.9e-05  Score=68.46  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +++.|-.+...|++.+|...|...+..+     |+...+.+++.+|++.+...|++++|...+..+..-|     +.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            5666777778899999999999998764     9999999999999999999999999999988876643     78898


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .-..+++||.++..+|+.++|...|++..+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            889999999999999999999999987654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.89  E-value=9.2e-05  Score=53.40  Aligned_cols=64  Identities=28%  Similarity=0.431  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc-ChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~A~~i  385 (420)
                      ..++..++..+...|+|++|+.++.+++..        +|.-...++++|.++..+| ++++|+..+++|+++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            356778899999999999999999999887        4667779999999999999 799999999999875

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.89  E-value=0.00023  Score=59.83  Aligned_cols=94  Identities=20%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..|...+..|++++|+..|+.++...     +......-++..|+.++...|++++|+..+..         ....+..
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~  117 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFK  117 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchH
Confidence            345555666777777777777775531     23333334455677777777777777776543         1334445


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      +.....+|.++...|++++|+..|++|+
T Consensus       118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  118 ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5566667777777777777777777764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.81  E-value=0.00051  Score=64.65  Aligned_cols=127  Identities=16%  Similarity=0.124  Sum_probs=95.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      |..+...+++++|.+.|.++.....+  ..+.....+.+...+.+|... ++++|+.++++++.+|..  .+.....|..
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~  116 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--AGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--CT-HHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence            34455678899999999999888766  234455677788888887776 999999999999999854  3666778999


Q ss_pred             HHHhhHHHHhh-cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          359 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       359 l~~La~~~~~~-g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      +.++|.++... |++++|+++|++|.++++.. | ......+.+.+++.+...+.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhC
Confidence            99999999998 99999999999999999987 2 22344556677777655443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.79  E-value=5.6e-06  Score=74.43  Aligned_cols=44  Identities=36%  Similarity=0.890  Sum_probs=40.9

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhh
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~   70 (420)
                      ..+|..|+.+.+..+|+.|+.+.||+++||+-+|..|+-.|+.+
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            67888999988899999999999999999999999999999877

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=97.75  E-value=1.9e-05  Score=84.20  Aligned_cols=41  Identities=32%  Similarity=0.531  Sum_probs=34.9

Q ss_pred             hccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCChH
Q 014710          182 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDI  222 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~~  222 (420)
                      .+.++||||.|||..-.   +| .+++|.|.|+|.+||||||+|.
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk  983 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK  983 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence            36789999999998764   34 4799999999999999999974

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.72  E-value=0.00037  Score=61.54  Aligned_cols=95  Identities=12%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      +.+..+..++.+|++..|.+.+++++..        +|.-..++..++.+|...|+.+.|-+.+++++.+        +|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p  100 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--------AP  100 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CC
Confidence            3345566677778888887777777653        4445556666667777777777777777776655        45


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .-|.++++.|-.++.+|++++|...+.+|+.
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            5555555555555555555555555555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.71  E-value=0.00098  Score=53.81  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=79.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      .++.|......|+.++|+..|++++.     .+.......+++..++..+..+|++++|+.+.++.+.-    +|.+. .
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~----~p~~~-~   73 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE----FPDDE-L   73 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcc-c
Confidence            45667778889999999999999976     35567777889999999999999999999999887542    23322 2


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+.....+|.++.++|+.+||+..+-+++.
T Consensus        74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   74 NAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334445578888999999999999887775

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.69  E-value=0.002  Score=58.19  Aligned_cols=127  Identities=22%  Similarity=0.298  Sum_probs=101.0

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ..+.+++...+..|++++|++.|+.+..     -||..+..-++...++.++.+.+++++|+.+..+-+..+     |.|
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~  104 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTH  104 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCC
Confidence            4455666666778999999999999864     478899999999999999999999999999887765544     789


Q ss_pred             hHHHHHHHHhhHHHHhh-----cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~-----g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      |.+.++++-.|..+...     .+...+...+.....++.+.  |+++.+.+...+|..++..+
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~L  166 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDAL  166 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHH
Confidence            99999999999998754     44555666666666666665  68999999888888776544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.67  E-value=0.0011  Score=59.10  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  359 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l  359 (420)
                      ..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|.+++++++..        +|.....+
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~  102 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALEH-----DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVL  102 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHH
Confidence            3334445555555555544332     1222   233344445555555555555555444432        11112234


Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      ..+|.++...|++++|+.++++++
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Confidence            444444444444444444444444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.66  E-value=0.0002  Score=50.96  Aligned_cols=59  Identities=22%  Similarity=0.357  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .++..+...|++++|+..+++++..        +|.-...++.+|.++..+|++++|+.++++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5788899999999999999988654        4889999999999999999999999999999864

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.61  E-value=0.0057  Score=51.29  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ....+..+......++...+...++.+...     +|+++.-..+...++..+...|++++|...++.++..     .++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d   80 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD   80 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence            344444555555677888777777777553     5777777788888999999999999999999987663     255


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      ........+.||.++...|++++|+..|+.
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            577788899999999999999999999865

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.61  E-value=0.00029  Score=75.95  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=114.3

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|+.++|+....++..+.++++|-+|+.+...+.+++-..........|+....+++..+..++|++||.++....++
T Consensus       984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nl 1063 (1236)
T KOG1839|consen  984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINL 1063 (1236)
T ss_pred             hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHH
Confidence            44577888888888888888999999999999999999988888888889999999999999999999999999999999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      +.++...++++.|+.+++.|.++-+..+|+.+-.+......+++.-.
T Consensus      1064 e~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1064 ELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999888777666665533

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.60  E-value=0.00047  Score=51.49  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=71.7

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+..+..+|++++|+..+++++..     .|.+.   .+...++.++...+++++|.+++++++...     +.++   .
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~   69 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---K   69 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---h
Confidence            344455678899999998888654     23333   667789999999999999999998876642     2222   6


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .++.+|.++...|++++|..++.+++++
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            7889999999999999999999988764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.60  E-value=0.0019  Score=57.59  Aligned_cols=93  Identities=11%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|++.+++++..      +.++....+...++.++...|++++|.+++.+++...     +.+   ...
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~  171 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQR---PES  171 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC---hHH
Confidence            33445678999999999888753      2233445567778999999999999999999887642     223   456


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +..+|.++...|++++|..++++++.+
T Consensus       172 ~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       172 LLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            788999999999999999999999887

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.54  E-value=0.0011  Score=62.29  Aligned_cols=106  Identities=17%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ..|......+++++|++.++++..++...  .......+++..++.+|... |++++|++++++++++++.--  .....
T Consensus        79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a  154 (282)
T PF14938_consen   79 EEAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA  154 (282)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence            34445555668899999999998877532  23334578889999999998 999999999999999997764  44556


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ...+.++|.++..+|+|++|++.|++.....
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            7778899999999999999999999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.53  E-value=0.003  Score=57.52  Aligned_cols=119  Identities=18%  Similarity=0.081  Sum_probs=86.3

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh--------hcHHHHHHHHHHhHHHHHHh
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRV  347 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~~~~  347 (420)
                      ...+..+...|++++|+..+++++..     .|+++....++..++.++...        |++++|++.+++++..    
T Consensus        74 ~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----  144 (235)
T TIGR03302        74 LDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----  144 (235)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----
Confidence            44556667789999999999999764     577777777777888888765        8899999998887654    


Q ss_pred             cCCCChHHH--------------HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          348 YPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       348 ~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      + +.++...              ...+.+|.+++..|++.+|+..++++++..     |++|...+....+..+..
T Consensus       145 ~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~  214 (235)
T TIGR03302       145 Y-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYL  214 (235)
T ss_pred             C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHH
Confidence            2 2333222              223577888999999999999999988763     345666665555555544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.53  E-value=0.0011  Score=62.85  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..|++++.+     .|.+   ..++..++.++...|++++|++.+.+++.+        .|.
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~  130 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALAL-----RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPT  130 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence            344455566778999999988888764     3444   567788999999999999999999888765        355


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      -...+.++|.++...|++++|+..+++++++
T Consensus       131 ~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        131 YNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5667899999999999999999999998863

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.48  E-value=0.00053  Score=49.95  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=60.5

Q ss_pred             HHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          320 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       320 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      |..+|...++|++|++++.+++..        +|.-...++..|.++..+|++.+|...+++++     ..+|+++....
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-----~~~p~~~~~~~   67 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERAL-----ELSPDDPDARA   67 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHH-----HHCCCcHHHHH
Confidence            356889999999999999998877        56677789999999999999999999999999     45677777666


Q ss_pred             HHHHH
Q 014710          400 LILKL  404 (420)
Q Consensus       400 ~~~~l  404 (420)
                      +..+|
T Consensus        68 ~~a~l   72 (73)
T PF13371_consen   68 LRAML   72 (73)
T ss_pred             HHHhc
Confidence            55443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.48  E-value=0.0015  Score=56.27  Aligned_cols=68  Identities=15%  Similarity=-0.013  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ....+..++..+...|++++|+..+++++.+     .+.++..+..++++|.++...|++++|+.++++|+.+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566788899999999999999999999876     2456778889999999999999999999999999987

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.41  E-value=0.0019  Score=67.80  Aligned_cols=93  Identities=11%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|+..+++++..     .|.++   .++..++.++...|++++|+.++++++.+        .|..
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~  432 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDF  432 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccC
Confidence            34445555667777777777777553     34443   34556677777777777777777776654        2333


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ...+.+||.++..+|++++|+.++++|+.
T Consensus       433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~  461 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGSIASSMATFRRCKK  461 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44556666666666666666666666664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.40  E-value=0.0086  Score=50.12  Aligned_cols=113  Identities=19%  Similarity=0.221  Sum_probs=77.8

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCC-C-------------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAYCQLT  340 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~-h-------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  340 (420)
                      +...+......|+...++..+++++.+++.-+-+. .             ...+.+...++..+...|++++|+.+++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            33334444445677788888888888775433222 1             123345566667777889999999999998


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          341 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       341 l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      +..        +|.--..+..|-.++...|+..+|+..|++..+.+...+|.+..
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            877        46666778888899999999999999999999999999997553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.40  E-value=0.0051  Score=54.58  Aligned_cols=111  Identities=7%  Similarity=0.005  Sum_probs=80.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH-HHhhc--HHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~-~~~g~--~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      ..+..+...|++++|+..|++++.+     .|.++   .++..++.++ ...|+  .++|.+.+++++..        +|
T Consensus        78 ~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------dP  141 (198)
T PRK10370         78 LLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALAL--------DA  141 (198)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------CC
Confidence            3444556789999999999998764     35554   4456677764 56676  58999998888765        45


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .-...++.||..+...|++++|+.+++++++..    +++.+...-+ ..++.++
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~~i-~~i~~a~  191 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQLV-ESINMAK  191 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHHHH-HHHHHHH
Confidence            556789999999999999999999999998764    3455444333 4444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.40  E-value=0.0067  Score=56.22  Aligned_cols=82  Identities=16%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      ....+....|+|++|+..++..+..+     |+++.....++.||.+++..|++++|+..++++++.+     |+||...
T Consensus       148 ~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~  217 (263)
T PRK10803        148 AAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAA  217 (263)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchh
Confidence            33334466799999999888776655     6678888999999999999999999999988887654     6888888


Q ss_pred             HHHHHHHHHHHH
Q 014710          399 ELILKLEEAQAE  410 (420)
Q Consensus       399 ~~~~~l~~~~~~  410 (420)
                      +.+.+++.+..+
T Consensus       218 dAl~klg~~~~~  229 (263)
T PRK10803        218 DAMFKVGVIMQD  229 (263)
T ss_pred             HHHHHHHHHHHH
Confidence            888888776544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.39  E-value=0.0014  Score=52.27  Aligned_cols=85  Identities=16%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  394 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  394 (420)
                      +++..++..+...|++++|.+++.+++..     .+.++.....++.+|.++...|++++|+.++++++..     .|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            45677888999999999999999988654     2566777888999999999999999999999999864     3666


Q ss_pred             chHHHHHHHHHHHHH
Q 014710          395 PFMKELILKLEEAQA  409 (420)
Q Consensus       395 ~~~~~~~~~l~~~~~  409 (420)
                      +....+...++.+..
T Consensus        73 ~~~~~~~~~~~~~~~   87 (119)
T TIGR02795        73 PKAPDALLKLGMSLQ   87 (119)
T ss_pred             CcccHHHHHHHHHHH
Confidence            655555555555533

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.34  E-value=0.00087  Score=65.39  Aligned_cols=73  Identities=15%  Similarity=0.082  Sum_probs=65.2

Q ss_pred             CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +.+|.....+.+++.+|...|++++|+..++++|.+-     ++++.....++++|.+|..+|++++|+..|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567778889999999999999999999999998873     666666678999999999999999999999999997

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.33  E-value=0.0028  Score=66.56  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|+..+++++.+        +|.....+..++.++...|++++|+.++++++..        .|.-...
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~  401 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDI  401 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            33345678999999999998764        3344567778899999999999999999998775        2344567


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+|.++...|++++|+..+++|+++
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            899999999999999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.32  E-value=0.003  Score=66.47  Aligned_cols=96  Identities=10%  Similarity=-0.026  Sum_probs=63.3

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +...-.|......|.+++|+.+++.++.+        .|+-..++.+++.++.+.+.+++|+..+++++..        .
T Consensus        87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~  150 (694)
T PRK15179         87 LFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------G  150 (694)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------C
Confidence            33344444555667778888777777654        3444556666777777777777777777766655        3


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |.-+..++.+|.++..+|++++|..+|+++++
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            55666677777777777777777777777665

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.30  E-value=0.0034  Score=68.67  Aligned_cols=106  Identities=12%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+...|++++|+..+++++.+     .|.++   .++.+++.++...|++++|++++++++..        +|.-...++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~  681 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIR  681 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence            344455666666666555443     34444   45566777777777777777777776654        344445677


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ++|.++..+|++++|+.++++|+++-     |+...+.+....+.+.
T Consensus       682 nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        682 QLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQ  723 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHH
Confidence            88888888888888888888887654     4555555444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.0061  Score=52.81  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          264 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       264 ~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +..+...++..+-.+...++..|++++|...|..++.......   .-...-++.+-+.+.+.++.|+.|+.-|.+++.+
T Consensus        87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel  163 (271)
T KOG4234|consen   87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL  163 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence            3334445566666778888999999999999999988753211   1222334566777899999999999999999887


Q ss_pred             HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .        |..-.++..=|.+|-...++++|++=|.+.+.+
T Consensus       164 ~--------pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  164 N--------PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             C--------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            4        777777888899999999999999888876553

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=97.27  E-value=0.00019  Score=72.67  Aligned_cols=61  Identities=28%  Similarity=0.397  Sum_probs=44.3

Q ss_pred             hccccCCCCcCCceeEEeC--C--EEEEEEecCCCCCCccCCChH------h--HHH--HhcCccccCCCCCCCc
Q 014710          182 VISIINHSCLPNAVLVFEG--R--LAVVRAVQHVPKGAEGQFDDI------Q--ESA--ILEGYRCKDDGCSGFL  242 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f~~--~--~~~vra~r~I~~Gee~~~~~~------~--~~~--l~~~~~C~c~~C~~~~  242 (420)
                      .+.++||||.||+.....+  +  ++.++|++||.+|||+|+++.      +  ...  ...+..|.+.+|.+.+
T Consensus       405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (480)
T COG2940         405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM  479 (480)
T ss_pred             ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence            4568999999999999643  3  788999999999999997752      1  111  1124567777777543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.25  E-value=0.004  Score=61.17  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=55.2

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC-ChHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGL  357 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-hp~~~~  357 (420)
                      +......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++.     .|.. ......
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~  108 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQRLL  108 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHHHH
Confidence            33444556777777777766543     2322   34556667777777777777776665543     1221 123345


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+..||.++...|++++|+.++.++++
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~  135 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVD  135 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            566667777777777777777766654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.22  E-value=0.0045  Score=53.51  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=61.9

Q ss_pred             CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .++.....+..++..+...|++++|+.++++++...     +.++..+..++.+|.++..+|++++|+.++++|+++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355566778899999999999999999999988763     344556788999999999999999999999999986

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.014  Score=56.05  Aligned_cols=105  Identities=14%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh--cCCC-----ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--YHPF-----SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  345 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--l~~~-----h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  345 (420)
                      ...-.....++..|+|..|...|++++.....-  ..+.     -.....++.+|+-.+.++++|..|++.|.++|..  
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--  286 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--  286 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence            333445667788899999999999998765321  1111     1234457789999999999999999999998775  


Q ss_pred             HhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          346 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       346 ~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                         .+.|   ..++|.=|+++..+|+++.|+..+++|+++
T Consensus       287 ---~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  287 ---DPNN---VKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             ---CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence               2334   458999999999999999999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.11  E-value=0.013  Score=57.57  Aligned_cols=92  Identities=18%  Similarity=0.152  Sum_probs=54.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCCh--hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      .+..+|++++|++.+++++..     +|.+.  .....+..++..+...|++++|+.++++++..        .|.....
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~  216 (389)
T PRK11788        150 IYQQEKDWQKAIDVAERLEKL-----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRA  216 (389)
T ss_pred             HHHHhchHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHH
Confidence            344556666666666665432     22222  23344556666666777777777777766553        2333445


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+|.++...|++++|..++++++..
T Consensus       217 ~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        217 SILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            666777777777777777777776653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.003  Score=62.54  Aligned_cols=106  Identities=18%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      +..+.+.+|...++.++.....++ +..+....+..+|+.++.+++.+++|+.+++++|..        .|.-+.++-.+
T Consensus       425 y~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asi  495 (611)
T KOG1173|consen  425 YTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASI  495 (611)
T ss_pred             ehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHH
Confidence            344677889999988886554444 333467778899999999999999999999999876        46667788889


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      |-++..+|+++.|+++|.+|+.+     .|+...+.+++.
T Consensus       496 g~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~  530 (611)
T KOG1173|consen  496 GYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK  530 (611)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence            99999999999999999999875     345545555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.04  E-value=0.0016  Score=46.62  Aligned_cols=65  Identities=12%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             HHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          325 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       325 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      ...|+|++|++++++++..        +|.-....+.||.++...|++++|...+.++...     .|++|.+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----DPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----GTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCHHHHHHHHh
Confidence            5679999999999998776        4667778889999999999999999998887643     344455554443

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.03  E-value=0.012  Score=62.24  Aligned_cols=117  Identities=13%  Similarity=0.049  Sum_probs=81.1

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+..+|++++|+..+++++..     .|.++   .++..++.++...|++++|++.+++++..        +|
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P  349 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KG  349 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc
Confidence            3344556667788899999888888753     45554   34566888899999999999988877653        34


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ........+|.++...|++++|+..|++++++.-..+.   +.+.+....+.++..
T Consensus       350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~  402 (656)
T PRK15174        350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS  402 (656)
T ss_pred             cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence            44445556688888899999999999999888665542   223344444444433

>PRK15331 chaperone protein SicA; Provisional

Probab=96.99  E-value=0.035  Score=46.96  Aligned_cols=99  Identities=9%  Similarity=0.141  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      +.++.+...|-.++.+|++++|..+|+-+-     ++.+.++.   ....|+.++...++|++|+..+-.+..+     .
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~  101 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL-----L  101 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence            357778888888999999999999987773     34555544   4578899999999999999988766443     3


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+.|..   .+..|+.++.+|+.++|+..++-|..
T Consensus       102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            344442   78889999999999999999888887

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.97  E-value=0.0031  Score=55.80  Aligned_cols=96  Identities=13%  Similarity=0.027  Sum_probs=77.8

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .|-.+...|..+.|.+.|++++++        +|.-.+++++-+-.+..+|.+++|.+++++++.      -+.-+....
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~  140 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD  140 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence            344456678888999999999764        444466777888888899999999999988754      366777888


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .+-++|-..+.+|+.+.|..+|++|+++..
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence            999999999999999999999999988543

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=96.96  E-value=0.00058  Score=66.50  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             cccCCCCcCCceeEEe--CC------EEEEEEecCCCCCCccCCChHh
Q 014710          184 SIINHSCLPNAVLVFE--GR------LAVVRAVQHVPKGAEGQFDDIQ  223 (420)
Q Consensus       184 s~~NHSC~PN~~~~f~--~~------~~~vra~r~I~~Gee~~~~~~~  223 (420)
                      =++||||.||+.+...  ++      .+.+.|+++|++|+|+|+++-.
T Consensus       274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~  321 (364)
T KOG1082|consen  274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK  321 (364)
T ss_pred             ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence            3789999999999853  32      5788999999999999987753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.92  E-value=0.011  Score=56.57  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710          284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  363 (420)
Q Consensus       284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  363 (420)
                      -.|+|++|+...+.-+.+.++. | .....-+++.+|+..++-.|+|+.|++++++.+.+...+  ++--.-|...|.||
T Consensus       207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLg  282 (639)
T KOG1130|consen  207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLG  282 (639)
T ss_pred             eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhh
Confidence            3467788877666555554332 2 222334566777777777777777777777777665443  23334455566666


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHH
Q 014710          364 KLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       364 ~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ..|.-+.++++|++|.++-++|.+
T Consensus       283 Ntytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  283 NTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666655543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.91  E-value=0.0013  Score=65.11  Aligned_cols=96  Identities=19%  Similarity=0.210  Sum_probs=81.6

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|+|++|++-|+.++..     -|++.   .+++.|+-.+....+.++|+..|+++|.+.        |...++.|+|
T Consensus       441 ~ls~efdraiDcf~~AL~v-----~Pnd~---~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNl  504 (579)
T KOG1125|consen  441 NLSGEFDRAVDCFEAALQV-----KPNDY---LLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNL  504 (579)
T ss_pred             hcchHHHHHHHHHHHHHhc-----CCchH---HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhh
Confidence            3467899999999888753     35554   456788888888889999999999999986        8888999999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNS  394 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  394 (420)
                      |..++++|.|+||.++|-.|+.+.+...+..-
T Consensus       505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~  536 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHNK  536 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhccccccc
Confidence            99999999999999999999999999765443

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=96.90  E-value=0.001  Score=44.76  Aligned_cols=47  Identities=21%  Similarity=0.450  Sum_probs=38.9

Q ss_pred             cCccccCCC---CCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchh
Q 014710           29 RCDGCFASS---NLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDK   75 (420)
Q Consensus        29 ~C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~   75 (420)
                      .|.+|....   ..+.|+.|+++.|||++=...+..+|+--|..++.+..
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvNe   50 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVNE   50 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhcc
Confidence            377777753   36899999999999999998887899999999987543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.87  E-value=0.014  Score=63.19  Aligned_cols=103  Identities=18%  Similarity=0.056  Sum_probs=76.7

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH-----------
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV-----------  343 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~-----------  343 (420)
                      +...+..+..+|++++|+..+++++..     .|.+   ..++..++.++...|+|++|+.++++++..           
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~   96 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPND---AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL   96 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence            345566667788899998888888753     3333   356777888888889999998888877642           


Q ss_pred             ----------------HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          344 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       344 ----------------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                                      +....+...+..+..+..+|..+...|++++|...|++++++
T Consensus        97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  154 (899)
T TIGR02917        97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI  154 (899)
T ss_pred             HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                            122233466777788888999999999999999999988764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.87  E-value=0.021  Score=60.14  Aligned_cols=99  Identities=9%  Similarity=-0.077  Sum_probs=81.0

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +.....+..+...+.+++|+..+++++..        .|.-...+..++.++.++|++++|.+++++++.        .|
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~  184 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QH  184 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cC
Confidence            33444555566678899999988888753        555567778899999999999999999988764        46


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      |.-...+..+|.++...|+.++|...|++|++...
T Consensus       185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            77788999999999999999999999999987643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.86  E-value=0.024  Score=62.37  Aligned_cols=105  Identities=10%  Similarity=0.119  Sum_probs=87.3

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      ....|++++|+..+++++...+. .++.+ ....+...++.++...|++++|..++++++...+...+..++..+..+..
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~-~g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQ-HDVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhh-hcchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            45578999999999998877654 33333 33456788999999999999999999999999988776777777777888


Q ss_pred             hhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          362 CGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       362 La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      +|.++...|++++|...+++++.+...
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~  605 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSN  605 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence            999999999999999999999998774

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.84  E-value=0.017  Score=60.95  Aligned_cols=92  Identities=13%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             HHhhhhcCCChHH----HHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          278 KTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       278 ~a~~~~~~g~~~~----a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .+..+...|++++    |+..+++++..     .|++   ..++..++.++...|++++|+.++++++..        +|
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P  315 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HP  315 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence            4445566778775    67778777653     3443   467788899999999999999999998764        34


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .....+..||.++...|++++|+..|+++++.
T Consensus       316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        316 DLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            44556778999999999999999999888774

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.83  E-value=0.0058  Score=43.24  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      .|..+..+|++++|+..+++++..        +|.-.+++..++.++...|++++|+.++++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456677889999999999998653        4667888899999999999999999999998765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.76  E-value=0.0085  Score=42.89  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=50.8

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHH
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV  343 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~  343 (420)
                      .....+..++..|++++|+..|++++.+     .|+   -..++.+++.++...| ++++|++++++++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            3445666778889999999999999875     344   4558889999999999 899999999998864

...

>PRK12370 invasion protein regulator; Provisional

Probab=96.75  E-value=0.0066  Score=62.85  Aligned_cols=84  Identities=13%  Similarity=0.071  Sum_probs=62.7

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  365 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~  365 (420)
                      +++++|+..+++++++     .|+++   .++..++.++...|++++|+.++++++..        .|.-+..++.+|.+
T Consensus       318 ~~~~~A~~~~~~Al~l-----dP~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~  381 (553)
T PRK12370        318 NAMIKAKEHAIKATEL-----DHNNP---QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWN  381 (553)
T ss_pred             hHHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            3456777777777553     45554   45566788888889999999999888775        34444567888999


Q ss_pred             HHhhcChHHHHHHHHHHHHH
Q 014710          366 EWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       366 ~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +...|++++|+..+++|+++
T Consensus       382 l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhc
Confidence            98999999999998888765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.67  E-value=0.018  Score=63.22  Aligned_cols=93  Identities=12%  Similarity=0.098  Sum_probs=70.4

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .|++++|+..+++++..     .|   . ...+.+++.++.+.|++++|+..+++++..        .|.-...+.++|.
T Consensus       589 ~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~  651 (987)
T PRK09782        589 PGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGY  651 (987)
T ss_pred             CCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            37777777777777643     23   2 456778888888899999999988887766        3444568889999


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      ++...|++++|+.+|++|+++     .|+++....
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~  681 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKG-----LPDDPALIR  681 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            999999999999999999874     566665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.66  E-value=0.0098  Score=57.64  Aligned_cols=91  Identities=15%  Similarity=0.170  Sum_probs=72.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      ....+|++++|+..+++++..     .|.+   ......++.++...|++++|+.++++.+.....    ........+.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~  190 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWW  190 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHH
Confidence            345678999999999999775     3444   455678899999999999999999998766532    2223345677


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      .+|.++..+|++++|+..|+++.
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            89999999999999999999984

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK12370 invasion protein regulator; Provisional

Probab=96.65  E-value=0.024  Score=58.65  Aligned_cols=90  Identities=16%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|+..+++++.+     .|+++.   ++..++.++...|++++|+.++++++.+-     +.++..   
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~~~---  408 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRAAA---  408 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCChhh---
Confidence            34445678999999999998764     455554   56778899999999999999999886652     333322   


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+.++.++...|++++|+..+++++.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            22344445567778888877777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.088  Score=49.14  Aligned_cols=127  Identities=14%  Similarity=0.179  Sum_probs=83.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF  351 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~  351 (420)
                      .++...+..++..|=++.|.++|..+...        ....-.++..|..+|-...+|++|++.++++..+    -| .+
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~  175 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTY  175 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccc
Confidence            33444556667777777787777666431        2234467778888888888999998888775433    23 45


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHH---------------------------HHHHHHHHhcCCCCchHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMT---------------------------EAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~---------------------------~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      ...+|.-+=+||+.+....+.+.|+..+.                           +|++.++...-.|+.++.++..+|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            66667666677666665555555555444                           444556666666777888888888


Q ss_pred             HHHHHHH
Q 014710          405 EEAQAEA  411 (420)
Q Consensus       405 ~~~~~~~  411 (420)
                      .++.+++
T Consensus       256 ~~~Y~~l  262 (389)
T COG2956         256 YECYAQL  262 (389)
T ss_pred             HHHHHHh
Confidence            8876654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.61  E-value=0.035  Score=44.82  Aligned_cols=64  Identities=16%  Similarity=0.013  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +...++.++-..|+.++|+.++++++.     .|...+.....+..+|..+..+|++++|+.++++++.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788889999999999999999976     3666777788999999999999999999999998875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.53  E-value=0.021  Score=64.41  Aligned_cols=98  Identities=15%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-----------HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-----------LMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-----------~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      ....+..+..+|++++|+..+++++...     |.+..           .......++..+...|++++|+.++++++..
T Consensus       306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        306 LGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3445566677899999999999987653     33321           1122345577888899999999999999876


Q ss_pred             HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                              +|.-...++.||.++..+|++++|+.+|++|+++
T Consensus       381 --------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        381 --------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                    3444567889999999999999999999999976

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.48  E-value=0.26  Score=39.17  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC--CChhHHH--HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP--FSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~--~h~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .++.+-...|-|++|...++++....+++=..  .++.=++  .+..|+.++..+|+|++++.-..++|.-+.+- |+-|
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~   92 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELH   92 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccc
Confidence            34455555678889989999998887654222  2333333  45678899999999999999999998877654 6777


Q ss_pred             hHHHHHH----HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710          353 PLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  392 (420)
Q Consensus       353 p~~~~~l----~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~  392 (420)
                      ..-|..+    +.=|.++...|+.+||++.++.|-+++...-|+
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            7666554    444777888999999999999999998877664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=96.37  E-value=0.0018  Score=68.06  Aligned_cols=42  Identities=33%  Similarity=0.529  Sum_probs=34.5

Q ss_pred             ccccCCCCcCCceeE-E--eC-CEEEEEEecCCCCCCccCCChHhH
Q 014710          183 ISIINHSCLPNAVLV-F--EG-RLAVVRAVQHVPKGAEGQFDDIQE  224 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~-f--~~-~~~~vra~r~I~~Gee~~~~~~~~  224 (420)
                      +-..||||.|||... |  +| .++.|.|+|||++|||++|+|.+.
T Consensus      1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred             ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence            346799999999876 3  44 378999999999999999997643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.36  E-value=0.0077  Score=37.20  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ++.+||.++..+|++++|+.+|++|+.+-..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999966543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.28  E-value=0.12  Score=49.69  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .|+|+.|++.|+..+.+..++  .+...-.++.+.|+..|.-..++..|+.|.++-|.+.+.+  .+-.--+.+++.||.
T Consensus       248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgn  323 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGN  323 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHH
Confidence            578999999999998876554  2344556778899999999999999999999999998766  334455788999999


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710          365 LEWFLGDTENAIKSMTEAVEILRITHGT  392 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~  392 (420)
                      ++-.+|..++|+.+..+++++-.....+
T Consensus       324 a~~alg~h~kAl~fae~hl~~s~ev~D~  351 (639)
T KOG1130|consen  324 AFNALGEHRKALYFAELHLRSSLEVNDT  351 (639)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999987776433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.26  E-value=0.058  Score=56.51  Aligned_cols=99  Identities=17%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      .+++.++.+|..++.+|++++|.+++..+++.        +|.-...+..|+.+|-+.|+.+.|+.....+     ..+-
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llA-----AHL~  203 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLA-----AHLN  203 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHH-----HhcC
Confidence            34667777888888889999999999999764        4445667788999999999999888765543     3333


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +..+   ..+..+|.....+|++++|+-+|.||+.
T Consensus       204 p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  204 PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            3333   5678888888888999998888888876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.24  E-value=0.13  Score=51.59  Aligned_cols=124  Identities=18%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------  343 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------  343 (420)
                      |=-.+..+..++|++.++        .+.+...-   +..--++++..+|+|++|++.|+.++.-               
T Consensus        86 AYc~Yrlnk~Dealk~~~--------~~~~~~~~---ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK--------GLDRLDDK---LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHcccHHHHHHHHh--------cccccchH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            333344556666665544        22222322   3334467888889999998888877321               


Q ss_pred             --------HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710          344 --------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       344 --------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                              +....|..--..=..+|+.|-++...|+|.+|++.|++|++|-...+-.+..--.++...|+-++-++-|
T Consensus       155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay  232 (652)
T KOG2376|consen  155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY  232 (652)
T ss_pred             HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence                    1222333333355688999999999999999999999999999998877666555666666666665554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.23  E-value=0.034  Score=45.51  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ......++..+...|++++|..++++++..        +|.....++.+|.++...|++++|..++++++++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455778899999999999999998887664        2445678889999999999999999999998886

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.23  E-value=0.011  Score=35.66  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=27.0

Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +..++.+|.+++.+|++++|+..+++|+++-
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3578999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.23  E-value=0.063  Score=57.90  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=78.0

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....|..+...|++++|++.+++++..     .|.++.   +...++.++...|++++|+.++++++..        +|.
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~  115 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSG--------APD  115 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence            344555667789999999999998764     355544   3457888999999999999999988665        233


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      -+. ++.+|.++...|++++|+..+++++++     .|+++.+
T Consensus       116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~  152 (765)
T PRK10049        116 KAN-LLALAYVYKRAGRHWDELRAMTQALPR-----APQTQQY  152 (765)
T ss_pred             CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            344 788899999999999999999999884     4555544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.23  E-value=0.011  Score=35.77  Aligned_cols=31  Identities=32%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +..++++|.++..+|++++|+..+++|+++-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            4678999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.19  E-value=0.085  Score=58.03  Aligned_cols=109  Identities=15%  Similarity=-0.012  Sum_probs=85.2

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+.....+|++++|...+++++...+..-++.++....+...++.++...|++++|...+++++.+.+...   ......
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~  613 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQ  613 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHH
Confidence            34455678999999999999988876654444444444566788888999999999999999999877443   233456


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+..+|.++...|++++|...+.++..+....
T Consensus       614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        614 CLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            77789999999999999999999998876553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.17  E-value=0.068  Score=57.94  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .++..++.++...|++++|.+++++++..        +|.-...+..+|.++...|+ .+|+.++++++.
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            44555666666666666666666665543        12222334444444444444 444444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.08  E-value=0.019  Score=48.01  Aligned_cols=67  Identities=12%  Similarity=-0.012  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      .++.++...|++++|+.++++++..        .|.-...++.+|.++..+|++++|+..|++|+++     .|+++...
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~   95 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPV   95 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH
Confidence            5688899999999999999998655        4666788899999999999999999999999974     56666543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.02  E-value=0.074  Score=39.06  Aligned_cols=62  Identities=26%  Similarity=0.409  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++..++..+...|++++|+.++++++...    | .++   ..++.+|.++...|++++|+.++++++++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            35678888999999999999998886652    2 222   67889999999999999999999999875

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.01  E-value=0.049  Score=58.60  Aligned_cols=87  Identities=8%  Similarity=-0.003  Sum_probs=41.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      ....+|+++.|++.++++++.     .|.++..+.   .++.+++..|+.++|+.++++++        ...|.-...+.
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~--------~p~n~~~~~ll  106 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ--------SSMNISSRGLA  106 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc--------cCCCCCHHHHH
Confidence            334456666666666666543     233321111   44445555555555555555543        11112222333


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      -+|.++...|++++|+.+|++++
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL  129 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSL  129 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455555555555555555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.01  E-value=0.038  Score=62.43  Aligned_cols=90  Identities=16%  Similarity=0.031  Sum_probs=44.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|++++|++.|++++..     .|.++   .++..++.++...|++++|++++++++..        .|.....
T Consensus       610 a~~~~~~g~~~~A~~~y~~al~~-----~P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~  673 (1157)
T PRK11447        610 ADWAQQRGDYAAARAAYQRVLTR-----EPGNA---DARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNT  673 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHH
Confidence            34445566777777777666553     23333   34455566666666666666555544321        1122223


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ...+|.++...|++++|+.++++++.
T Consensus       674 ~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        674 QRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            33444444444444444444444433

>TIGR00540 hemY_coli hemY protein

Probab=95.98  E-value=0.063  Score=53.34  Aligned_cols=88  Identities=10%  Similarity=-0.013  Sum_probs=63.5

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH--hHHHHHHhcCCCChHHHHHHHHhh
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCG  363 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~--~l~~~~~~~g~~hp~~~~~l~~La  363 (420)
                      ++.+.+++..++.++     .+|.++. ...+..++.++.+.|+|++|.+++++  ++..        +|.--. +..||
T Consensus       313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La  377 (409)
T TIGR00540       313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAA  377 (409)
T ss_pred             CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHH
Confidence            344455555555543     3677775 56778889999999999999999884  4333        233222 34889


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          364 KLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       364 ~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      .++..+|+.++|..++++++..+-.
T Consensus       378 ~ll~~~g~~~~A~~~~~~~l~~~~~  402 (409)
T TIGR00540       378 DAFDQAGDKAEAAAMRQDSLGLMLA  402 (409)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.92  E-value=0.11  Score=48.60  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=82.4

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHHHHH------hcCCCChH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQR------VYPQFHPL  354 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~------~~g~~hp~  354 (420)
                      ..+|+++.|..++.++..... .+.|.. -.+.++.++++.-....+ ++++|..+.++++++.+.      ..+.....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457899999999999877654 333433 346778888888888889 999999999999999765      12233456


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      ....+..|+.++...+..+...+ -.++++.++..+|. ||.+.
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHHH
Confidence            67888888999988887654333 55667777777774 55544

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.90  E-value=0.11  Score=39.97  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             HHHhhcHHHHHHHHHHhHHHHHHhcCCC-ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          324 LMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       324 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~-hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      ....||+.+|++...+..+....-.... .......+.++|.++...|++++|...+++|+++.+..-  |..-....+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence            3456999999999999988766555433 335677789999999999999999999999999998862  3333444444


Q ss_pred             HHHHH
Q 014710          403 KLEEA  407 (420)
Q Consensus       403 ~l~~~  407 (420)
                      -+..+
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            44433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.88  E-value=0.095  Score=46.44  Aligned_cols=95  Identities=12%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  365 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~  365 (420)
                      ++.++++..+++.+..     .|.+   ...+..|+.+|...|++++|+..+++++.+.        |.-...+..+|.+
T Consensus        53 ~~~~~~i~~l~~~L~~-----~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~a  116 (198)
T PRK10370         53 QTPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATV  116 (198)
T ss_pred             hhHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence            3445555555555443     2444   5578889999999999999999999887653        5556677888987


Q ss_pred             H-HhhcC--hHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          366 E-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       366 ~-~~~g~--~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      + ...|+  +++|...+++|++.     .|+++.....+
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~-----dP~~~~al~~L  150 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALAL-----DANEVTALMLL  150 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHh-----CCCChhHHHHH
Confidence            5 56677  59999999999874     55666554433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.86  E-value=0.022  Score=40.53  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +.+|++++|++.+++++..     .|.   -..++..++.+|...|++++|.+++.+++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-----NPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-----TTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3568999999999999765     233   4556668999999999999999998887654

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.05  Score=53.38  Aligned_cols=102  Identities=22%  Similarity=0.224  Sum_probs=75.0

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      |..+..+++|++|++.|..++.+.. ..|--++..+.+.+...-++.=.+++.+|+.++.+++++        .|.--.+
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A  539 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQA  539 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHH
Confidence            3345678899999999999988743 233334333333332222233348999999999998776        5777788


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      +-.||++...+|+.++|+++++++..+.+..
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999998876654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.85  E-value=0.12  Score=55.69  Aligned_cols=97  Identities=12%  Similarity=-0.046  Sum_probs=72.7

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhh---hc----CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKK---LY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~---~l----~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +..+|++++|+..++.+......   ++    ...+.....+...++.++...|++++|++.+++++..        .|.
T Consensus       320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~  391 (765)
T PRK10049        320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APG  391 (765)
T ss_pred             HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            45678899999888888664210   11    1112234566678889999999999999998888655        233


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      -...++.+|.++...|++++|+..|++|+.+.
T Consensus       392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            34688999999999999999999999998864

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.84  E-value=0.04  Score=51.57  Aligned_cols=101  Identities=17%  Similarity=0.234  Sum_probs=69.2

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..|......|+.++|+..++++++.     .|.++.+   +..++.+++..|+.+++.+.........     +.+|.  
T Consensus       151 ~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~--  215 (280)
T PF13429_consen  151 ALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD--  215 (280)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH--
Confidence            3444456689999999999999875     4666665   4456778888899998766655543333     33333  


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                       .+..+|.++..+|++++|+.++++++.     ..|++|.+.
T Consensus       216 -~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~  251 (280)
T PF13429_consen  216 -LWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL  251 (280)
T ss_dssp             -HCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred             -HHHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence             456778999999999999999999774     456666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.81  E-value=0.021  Score=34.39  Aligned_cols=32  Identities=34%  Similarity=0.490  Sum_probs=28.1

Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      +..++.+|.++..+|++++|..++++|+++-.
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            35789999999999999999999999998743

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.81  E-value=0.13  Score=45.74  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  394 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  394 (420)
                      +.+...+......|+|.+|++.+++++..+     +.+|....+.+.+|.++...|++.+|+..+++-++.     =|+|
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~   75 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNS   75 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence            445667778889999999999999886664     778999999999999999999999999888776542     3678


Q ss_pred             chHHHHHHHHHHH
Q 014710          395 PFMKELILKLEEA  407 (420)
Q Consensus       395 ~~~~~~~~~l~~~  407 (420)
                      |.+..++.+++.+
T Consensus        76 ~~~~~A~Y~~g~~   88 (203)
T PF13525_consen   76 PKADYALYMLGLS   88 (203)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHH
Confidence            8887777666665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.059  Score=49.24  Aligned_cols=89  Identities=22%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      .++.+--+...|+|..|.+-++.-+.-|     +.++.+..++|.||.+++.+|++++|...+..+.+    .| |+||-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence            4455556677799999999888776654     88899999999999999999999999999988877    22 67888


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q 014710          397 MKELILKLEEAQAEASYKL  415 (420)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~  415 (420)
                      .-+.+.+|+.+..++...+
T Consensus       214 ApdallKlg~~~~~l~~~d  232 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH
Confidence            8888888888876665443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.76  E-value=0.0078  Score=60.75  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ++.-.++++-|+-+|.++++++.|.-++++++.+        .|.=...+-.+|.++..+|+.++|+.++++|.-
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            3445667777777788888888888888877765        566667777888888888888888888888864

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.75  E-value=0.061  Score=45.25  Aligned_cols=77  Identities=17%  Similarity=0.089  Sum_probs=64.6

Q ss_pred             CCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          308 PFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       308 ~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .-. ...++..+.++..+...|++++|..+++-+..+        .|....-+++||-++..+|++++|+..|.+|..+ 
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-   98 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-   98 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence            335 677888899999999999999999998866443        5778889999999999999999999999999764 


Q ss_pred             HHhcCCCCchH
Q 014710          387 RITHGTNSPFM  397 (420)
Q Consensus       387 ~~~~G~~h~~~  397 (420)
                          .+|+|..
T Consensus        99 ----~~ddp~~  105 (157)
T PRK15363         99 ----KIDAPQA  105 (157)
T ss_pred             ----CCCCchH
Confidence                5677644

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.047  Score=54.38  Aligned_cols=92  Identities=20%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      ++.-|.+.+.++..     ..|++|.++   +.++.+....+.|.+|..+++.++...+.+..+- +...-.+.+||.++
T Consensus       395 n~kLAe~Ff~~A~a-----i~P~Dplv~---~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  395 NLKLAEKFFKQALA-----IAPSDPLVL---HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAY  465 (611)
T ss_pred             cHHHHHHHHHHHHh-----cCCCcchhh---hhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHH
Confidence            34444444444443     346777654   4567777778999999999999998777776632 24444678999999


Q ss_pred             HhhcChHHHHHHHHHHHHHHH
Q 014710          367 WFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       367 ~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      -.++++++|+.++++|+..-.
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCC
Confidence            999999999999999987543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.74  E-value=0.1  Score=47.84  Aligned_cols=84  Identities=12%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      .......+......|+|++|++.+++++.    .+| ..|......+.||.++...+++++|+..+++.++.     =|+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcC
Confidence            33455667777888999999999888766    344 55888889999999999999999999999998764     478


Q ss_pred             CchHHHHHHHHHHH
Q 014710          394 SPFMKELILKLEEA  407 (420)
Q Consensus       394 h~~~~~~~~~l~~~  407 (420)
                      ||.+..++.+++-+
T Consensus       102 ~~~~~~a~Y~~g~~  115 (243)
T PRK10866        102 HPNIDYVLYMRGLT  115 (243)
T ss_pred             CCchHHHHHHHHHh
Confidence            88888877777654

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.71  E-value=0.071  Score=50.49  Aligned_cols=67  Identities=13%  Similarity=0.036  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ......+..++.+|...|++++|+..+++++..        .|.....++.+|.++...|++++|+..+++|+++
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344677888999999999999999999998775        3555678999999999999999999999999874

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.17  Score=48.74  Aligned_cols=104  Identities=12%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      ++..-+.+...+.+|++..|-+.|..++.+     .|+|.. ...++.+.+-+...+|+.++|+.-|..++.+       
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------  316 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------  316 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------
Confidence            333344566677889999999999998764     566766 4567889999999999999999999999877       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                       .+.+...+..-|..+..++++++|...+++|++.-..
T Consensus       317 -D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  317 -DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             5888889999999999999999999999999886443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.63  E-value=0.087  Score=51.74  Aligned_cols=94  Identities=16%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      ..+..|...+..|++++|+..+..++..     +|+|++...+   .++++...++.++|.+.+++++...        |
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~---~~~i~~~~nk~~~A~e~~~kal~l~--------P  371 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLEL---AGDILLEANKAKEAIERLKKALALD--------P  371 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcC--------C
Confidence            3455666667778888888888886654     5788887664   5778899999999999999987764        4


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      .....-.++|.++++.|++.+|+..|++.+
T Consensus       372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             CccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            445567888999999999998887777654

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=95.61  E-value=0.0029  Score=64.80  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=37.5

Q ss_pred             ccccCCCCcCCceeE--EeCC------EEEEEEecCCCCCCccCCCh--HhHHHHhcCccccCC--CCCC
Q 014710          183 ISIINHSCLPNAVLV--FEGR------LAVVRAVQHVPKGAEGQFDD--IQESAILEGYRCKDD--GCSG  240 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~--f~~~------~~~vra~r~I~~Gee~~~~~--~~~~~l~~~~~C~c~--~C~~  240 (420)
                      +-++||||+||..+.  |...      .+.+-|.+-|++|.|++.+|  ..-..-.....|.|.  .|.|
T Consensus      1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Crg 1259 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRG 1259 (1262)
T ss_pred             hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhc
Confidence            457899999999876  5332      35677889999999999544  321111123567663  3544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.54  E-value=0.034  Score=34.24  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQR  346 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  346 (420)
                      ++.+|+.+|...|+|++|+++++++|.+.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999998866543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.54  E-value=0.075  Score=48.08  Aligned_cols=86  Identities=22%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|++..|+..++++..+     .|++   .++++.++.+|.+.|++++|..-+.+++++.     +..|   ..+.+|
T Consensus       111 ~~~g~~~~A~~~~rkA~~l-----~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p---~~~nNl  174 (257)
T COG5010         111 IRNGNFGEAVSVLRKAARL-----APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEP---SIANNL  174 (257)
T ss_pred             HHhcchHHHHHHHHHHhcc-----CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCc---hhhhhH
Confidence            3468999999988888653     3444   4567788999999999999999999988775     3333   367899


Q ss_pred             hHHHHhhcChHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |.++.-.|+++.|+.++.+|..
T Consensus       175 gms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999998864

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.51  E-value=0.31  Score=35.68  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  348 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  348 (420)
                      +++..+++.+.+.++|+..++++++..     ++.+..+.+...|+++|...|+++++++++.+=+++.+..-
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344445566667789999999998764     34567899999999999999999999999988888776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.50  E-value=0.077  Score=51.78  Aligned_cols=95  Identities=19%  Similarity=0.049  Sum_probs=72.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      -|+++.   ++.+|++.|.++++.++|++.+++++..-     .   .=+..++.||++|-++++.++|..++.+-++..
T Consensus       428 kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~~-----d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  428 KPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILLG-----D---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             CCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            355543   45678999999999999999988876542     1   157799999999999999999999999999988


Q ss_pred             HHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710          387 RITHGTNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       387 ~~~~G~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                       ..-|.-.+.+.....-|++-..-+..
T Consensus       497 -~~eg~~~~~t~ka~~fLA~~f~k~~~  522 (559)
T KOG1155|consen  497 -ELEGEIDDETIKARLFLAEYFKKMKD  522 (559)
T ss_pred             -HhhcccchHHHHHHHHHHHHHHhhcc
Confidence             45677777777666666665444433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=0.25  Score=49.73  Aligned_cols=104  Identities=12%  Similarity=0.071  Sum_probs=75.1

Q ss_pred             hhhhcCCChHHHHHHHHHHHHH-----------------------hhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHH
Q 014710          280 LALTSCGNHQEVVSTYKMIEKL-----------------------QKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY  336 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~  336 (420)
                      ..++..|++++++++|+.+.+-                       ..+.+...--...+...+.+.+++..|+|.+|++.
T Consensus       118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el  197 (652)
T KOG2376|consen  118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL  197 (652)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence            3445566777777777776331                       01112222233777889999999999999999999


Q ss_pred             HHHhHHHHHHhcCCC-------ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          337 CQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       337 ~~~~l~~~~~~~g~~-------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      .++++.+.++-+-..       --.++....+||-++..+|+.+||...|...+
T Consensus       198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            999999877665422       13577888899999999999999998776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.38  E-value=0.14  Score=49.73  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=75.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      +-.|++++|.+.|+.++.        ++....+++.+++-.+-.+|++++|++.+.++-.++        ..-+..++++
T Consensus       501 f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--------~nn~evl~qi  564 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------LNNAEVLVQI  564 (840)
T ss_pred             eecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------HhhHHHHHHH
Confidence            345778888888887764        567788899999999999999999999988876665        3446678899


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      |.+|--+.+..+|+++|-+|..+     =|+.|-+.
T Consensus       565 aniye~led~aqaie~~~q~~sl-----ip~dp~il  595 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSL-----IPNDPAIL  595 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH
Confidence            99999999999999999887653     35666443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.36  E-value=0.51  Score=41.05  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=69.8

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +..|....+.+++++|+..++..+..      +.+-. ..-+...|+.+..+.|.+++|+......         .++-.
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w  157 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESW  157 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccH
Confidence            45666777888899888887776542      22222 2223466899999999999998865432         34445


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .+....--|.++...|+.++|+..|.+|+...
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            55556666999999999999999999999876

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.18  Score=45.12  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      ..+.+....+..|+.-|-+++.+        +|.....+.+=+-.+.+..+|+.+..-|++++++        .|..+..
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~vk~   80 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNLVKA   80 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHHHHH
Confidence            33444455678888888777654        3333444455566788899999999999999887        4889999


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+-||...+....+.+|++.|++|+.+++..
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999887754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.29  E-value=0.077  Score=49.65  Aligned_cols=93  Identities=22%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|+.+++.+.++......     |.++.+   +..++.++..+|+.++|+.++++++..     .+.+|   ..
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~~-----~p~d~---~~  250 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALKL-----NPDDP---LW  250 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHHH-----STT-H---HH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhccccccccccccccccccc-----ccccc---cc
Confidence            334455677777666666654432     555553   456799999999999999999997654     24444   46


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      +..+|.++...|+.++|..++++++.-++
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             HHHHHHHHT--------------------
T ss_pred             ccccccccccccccccccccccccccccC
Confidence            67899999999999999999999987664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.23  E-value=0.11  Score=54.94  Aligned_cols=97  Identities=12%  Similarity=0.016  Sum_probs=72.3

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .|..++..|++..+.++.+.++...     .+.+...+..+.++..|...|+|++|-.|+.+++..-     +++  ...
T Consensus       276 LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l  343 (1018)
T KOG2002|consen  276 LANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVL  343 (1018)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccc
Confidence            4555677788888887777776542     3445566788899999999999999999998876553     222  455


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .++.||+.|+..|++++|...+.+.+..+
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~  372 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL  372 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence            67788999999999999888888766543

>PLN03158 methionine aminopeptidase; Provisional

Probab=95.18  E-value=0.012  Score=57.69  Aligned_cols=39  Identities=26%  Similarity=0.706  Sum_probs=30.7

Q ss_pred             CCccCccccCCCCCcCCCCCCc-------ccccChhhchhhhhhhHh
Q 014710           26 SISRCDGCFASSNLKKCSACQV-------VWYCGSNCQKLDWKLHRL   65 (420)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~-------~~yCs~~C~~~~~~~H~~   65 (420)
                      ....|..|.+.-. ..|+.|..       .+|||++|.+.+|+.||.
T Consensus         8 ~~~~c~~c~~~a~-l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~   53 (396)
T PLN03158          8 SPLACARCSKPAH-LQCPKCLELKLPREGASFCSQDCFKAAWSSHKS   53 (396)
T ss_pred             CcccccCCCCccc-ccCccchhcCCCCCCceeECHHHHHHHHHHHHH
Confidence            3566999998743 77888842       689999999999987753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.11  Score=51.52  Aligned_cols=107  Identities=25%  Similarity=0.249  Sum_probs=81.3

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .....++.|+|++|+..|..++.+     .|.|+.+..   +=+..|..+|+|++|++-..+..++        .|.-+.
T Consensus         8 kgnaa~s~~d~~~ai~~~t~ai~l-----~p~nhvlyS---nrsaa~a~~~~~~~al~da~k~~~l--------~p~w~k   71 (539)
T KOG0548|consen    8 KGNAAFSSGDFETAIRLFTEAIML-----SPTNHVLYS---NRSAAYASLGSYEKALKDATKTRRL--------NPDWAK   71 (539)
T ss_pred             HHHhhcccccHHHHHHHHHHHHcc-----CCCccchhc---chHHHHHHHhhHHHHHHHHHHHHhc--------CCchhh
Confidence            345568889999999999888654     344444443   3345788899999999988887665        588899


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .|..+|-++..+|+|++|+..|.+.++.        .|....++.-|+++.
T Consensus        72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   72 GYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence            9999999999999999999999998763        233445555555554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.14  E-value=0.14  Score=47.79  Aligned_cols=93  Identities=13%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      |....-..+++.|+..+++++..        ++...++-..++++....|+|..|++..       +++...++-.++.+
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~-------e~v~eQn~~yl~ev  251 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEAL-------ERVLEQNPEYLSEV  251 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHH-------HHHHHhChHHHHHH
Confidence            44444455777788887777643        5555666667888888888888877754       45556678888889


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +..|...|..+|+.++++.+|.++++..
T Consensus       252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         252 LEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            9999999999999999999999987643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.26  Score=49.00  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+..++..|+|..|+..|.+++..        +|.-..++.+.+-.|..+|.+..|+.-|+..++.        +|....
T Consensus       364 kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~k  427 (539)
T KOG0548|consen  364 KGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIK  427 (539)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHH
Confidence            455667889999999999997654        3555667778899999999999999999998877        888888


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+..-|.++..+.+|++|++.|++|+..
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999988763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.00  E-value=0.15  Score=53.55  Aligned_cols=94  Identities=21%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +-+.+.|+.++..|++.+|+.++-.+...       .-....-++..+|..|..+|.+++|++++.++|...        
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------  479 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--------  479 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------
Confidence            44456677788889999999888777432       111226678899999999999999999999988764        


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      |.-..+...|+.++..+|+.++|.+.+.+
T Consensus       480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  480 PDNLDARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            66667888999999999999965544443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.89  E-value=0.2  Score=48.48  Aligned_cols=75  Identities=12%  Similarity=0.020  Sum_probs=60.4

Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+.++........++.++...|++++|...+++++...        |.-...+..+|.++...|++++|+.+++++++.
T Consensus       106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            346667777777788888999999999999999987752        333567888999999999999999999999887


Q ss_pred             HHH
Q 014710          386 LRI  388 (420)
Q Consensus       386 ~~~  388 (420)
                      ...
T Consensus       178 ~~~  180 (355)
T cd05804         178 WDC  180 (355)
T ss_pred             cCC
Confidence            543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.88  E-value=0.25  Score=48.70  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      ....+-.+...++.+|++++|++.|..++++.     |.-+.   -+.+.+-.|..+|+|++-++.+.++|++       
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi---FYsNraAcY~~lgd~~~Vied~TkALEl-------  178 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI---FYSNRAACYESLGDWEKVIEDCTKALEL-------  178 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence            34444456777888999999999999998875     33222   2457788999999999999999999877       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKLEEAQAE  410 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~~~~~~~l~~~~~~  410 (420)
                       .|....+++.=|+++-.+|++++|+.=+ -++-|+.-.-+... |....++.+.+.-.+.
T Consensus       179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~  237 (606)
T KOG0547|consen  179 -NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAK  237 (606)
T ss_pred             -CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence             6999999999999999999999987433 23444444333222 2334455555544443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=1.7  Score=39.25  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc---CCCChhHHH-------HHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPFSVNLMQ-------TREKLIKILMELEDWKEALAYCQLTI  341 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l---~~~h~~~~~-------~~~~L~~~~~~~g~~~~A~~~~~~~l  341 (420)
                      +..+..+...++..|++.+|..-|+.++...+.+.   -|..+..+.       ++.+..+.+...|+|-+++++|-.+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            45667778888899999999999998877544321   244444333       44566777888899999999998876


Q ss_pred             HHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          342 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       342 ~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..        ||.-..+||.=|+++...-+..||..=+++++++
T Consensus       258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            54        6778889999999999999999999888888764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.70  E-value=0.15  Score=50.14  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=53.8

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      .+.+..+...|++++|+..|++++++     .|++.....++++++.+|..+|++++|++.+++++..
T Consensus        79 ~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         79 VNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34455667789999999999999875     4777666677899999999999999999999999987

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.68  E-value=0.29  Score=46.43  Aligned_cols=106  Identities=15%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChh--HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc-CCC-ChHHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVN--LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQF-HPLLGLQYY  360 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-g~~-hp~~~~~l~  360 (420)
                      .+.|+++++.|+.+.+..    |.+.-.  -+++.-.|+.++..+.|+++|+-+..+++++.+.+- +.+ .......++
T Consensus       135 ls~fq~~Lesfe~A~~~A----~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYA----HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HHHHHHHHHHHHHHHHHh----hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            345677888888876653    333333  346778899999999999999999999999987764 544 456788999


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      .||..+-.+|..-.|.++-++|.++--. +|..-.
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal~-~Gdra~  244 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLALQ-HGDRAL  244 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHH-hCChHH
Confidence            9999999999999999999999987655 565443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.67  E-value=0.057  Score=54.73  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      |++++.|++.+++++.+        ++....++.-++.-+....+++.|..+++.+|.+--+.|        .++|-||.
T Consensus       434 Qkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG~  497 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLGT  497 (638)
T ss_pred             hhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhhh
Confidence            56777777777777533        333344444556666667777777777777766543322        46666777


Q ss_pred             HHHhhcChHHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +|..+++++.|+.++++|+.|
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             heeccchhhHHHHHHHhhhcC
Confidence            777777777777777666653

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=94.54  E-value=0.03  Score=50.75  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             ccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCChHhH
Q 014710          183 ISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDIQE  224 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~~~~  224 (420)
                      +-++|||=.+|+..-.   +| ..+++.|-++|.+|||+.|+|-.|
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR  379 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR  379 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence            5689999999998764   44 369999999999999999987543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.53  E-value=0.22  Score=46.62  Aligned_cols=78  Identities=23%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             HHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc-ChHHHHHHHHHHHHHHHH--hcCCCCchHHHHH
Q 014710          325 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKELI  401 (420)
Q Consensus       325 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~A~~i~~~--~~G~~h~~~~~~~  401 (420)
                      -..|+++.|..++.|+-.......|..--.++..+|+.|+.....+ ++++|...+++|+++++.  ..+..|+...++.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            3569999999999999888776677778899999999999999999 999999999999999876  3457777776654


Q ss_pred             H
Q 014710          402 L  402 (420)
Q Consensus       402 ~  402 (420)
                      .
T Consensus        84 ~   84 (278)
T PF08631_consen   84 L   84 (278)
T ss_pred             H
Confidence            3

It is also involved in sporulation [].

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.87  Score=44.73  Aligned_cols=112  Identities=17%  Similarity=0.051  Sum_probs=85.5

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      .+.++.++|++-|++++.....        -..++..||.+|-+.++..+|.+++.+.++.. ..-|.-.|.+-.+..-|
T Consensus       443 ~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fL  513 (559)
T KOG1155|consen  443 EKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFL  513 (559)
T ss_pred             HHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHH
Confidence            3446678888888888664211        24567789999999999999999999999988 66788888888888889


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      |.-....+++++|..|..+++.-        .+...+....+.+++..+
T Consensus       514 A~~f~k~~~~~~As~Ya~~~~~~--------~~e~eeak~LlReir~~~  554 (559)
T KOG1155|consen  514 AEYFKKMKDFDEASYYATLVLKG--------ETECEEAKALLREIRKIQ  554 (559)
T ss_pred             HHHHHhhcchHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHhc
Confidence            99999999999999988877653        334455555555555433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.52  E-value=0.4  Score=47.45  Aligned_cols=96  Identities=5%  Similarity=-0.025  Sum_probs=70.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------H-
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------Y-  344 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~-  344 (420)
                      ....+|++++|+..++++.+     ..|+|+..   +..++.+|...|+|++|++++.++...               + 
T Consensus       162 l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~  233 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI  233 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34567899999998888855     35777754   455688899999999999665554421               0 


Q ss_pred             ------------------HHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          345 ------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       345 ------------------~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                                        -.-+|..+|........+|..+...|+.++|.+.++++++
T Consensus       234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                              0123445555666778889999999999999999998876

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.52  E-value=1.6  Score=39.39  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=68.9

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH-H
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-Q  358 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~-~  358 (420)
                      ..++...+|++|..-+.++.+-++..  .+-.+-...+...+-+...+..|.++..+++++..+|-..-   +|.++- +
T Consensus        39 vafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G---spdtAAma  113 (308)
T KOG1585|consen   39 VAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG---SPDTAAMA  113 (308)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CcchHHHH
Confidence            33444567777776666665544321  11223456667777778888999999999999988876543   344433 3


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      +-+-|++ .+..+.++|+.+|++++++++..
T Consensus       114 leKAak~-lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  114 LEKAAKA-LENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHH-hhcCCHHHHHHHHHHHHHHHhcc
Confidence            4444444 46788888999999998888874

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.50  E-value=0.28  Score=48.54  Aligned_cols=85  Identities=16%  Similarity=0.112  Sum_probs=55.8

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  365 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~  365 (420)
                      ++.+++++..++.++.     +|+++   ..+..++.++...|+|.+|.+++++++..        +|... .+..||.+
T Consensus       308 ~~~~~al~~~e~~lk~-----~P~~~---~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~-~~~~La~~  370 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQ-----HGDTP---LLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAY-DYAWLADA  370 (398)
T ss_pred             CChHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHH-HHHHHHHH
Confidence            4455555554444332     34444   34556778888888888888888887665        23322 24468888


Q ss_pred             HHhhcChHHHHHHHHHHHHHHH
Q 014710          366 EWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       366 ~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      +..+|+.++|..+|++++....
T Consensus       371 ~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        371 LDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHhhhc
Confidence            8888888888888888877543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.44  E-value=0.51  Score=40.93  Aligned_cols=104  Identities=10%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      .+.++-+..-|+.++|++.|.++....     ...-+.+++..+++.+.+..|+|.....+..++-...+.  |++-...
T Consensus        40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~  112 (177)
T PF10602_consen   40 EDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERR  112 (177)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHH
Confidence            345555667799999999998875532     344567888889999999999999999999998887776  3321122


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ...-.--|..++..++|.+|...+-.+...+
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            2222222444556899999998888876544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.35  E-value=0.11  Score=32.46  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=33.7

Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      ..+..||.+.++.++|++|..=|++|++|.+..+.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            4688999999999999999999999999999987664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>TIGR00540 hemY_coli hemY protein

Probab=94.21  E-value=2.1  Score=42.43  Aligned_cols=91  Identities=8%  Similarity=-0.083  Sum_probs=40.6

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      ++......|+++.|.+...+..+.     .|. +  .-.+...++++...|+++.|.+++.++.    +..|.....+  
T Consensus        90 ~glla~~~g~~~~A~~~l~~~~~~-----~~~-~--~~~~llaA~aa~~~g~~~~A~~~l~~a~----~~~p~~~l~~--  155 (409)
T TIGR00540        90 EALLKLAEGDYAKAEKLIAKNADH-----AAE-P--VLNLIKAAEAAQQRGDEARANQHLEEAA----ELAGNDNILV--  155 (409)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhc-----CCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCcCchHH--
Confidence            333344456666666665544332     111 1  1112234455555566666666655543    1222222111  


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                       ....+.++...|++++|...+++..
T Consensus       156 -~~~~a~l~l~~~~~~~Al~~l~~l~  180 (409)
T TIGR00540       156 -EIARTRILLAQNELHAARHGVDKLL  180 (409)
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             1122555555555555555544443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.15  E-value=1.9  Score=35.09  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +...-+.|+.+.|++.|.+++.+.     |.   ...++++-++++.-+|+.++|++-..+++++.    |+.-...-..
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~-----P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa  117 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA-----PE---RASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQA  117 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc-----cc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHH
Confidence            334455689999999999998763     33   35667788999999999999999988887654    5555555566


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +.+=|.+|-.+|+.+.|..=+..|.++
T Consensus       118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            777789999999999999888888764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.89  E-value=0.37  Score=47.33  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .++-.+|++++.+.+..     .|.+   ..++...+..+...++++.|++.++++....        |.--..++.||+
T Consensus       213 ~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~  276 (395)
T PF09295_consen  213 MNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAE  276 (395)
T ss_pred             cCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHH
Confidence            34556777777777632     2334   5566677888999999999999999998774        888889999999


Q ss_pred             HHHhhcChHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMT  380 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~  380 (420)
                      +|..+|++++|+-.+.
T Consensus       277 ~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  277 CYIQLGDFENALLALN  292 (395)
T ss_pred             HHHhcCCHHHHHHHHh
Confidence            9999999999987765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=93.88  E-value=1.4  Score=47.07  Aligned_cols=123  Identities=17%  Similarity=0.144  Sum_probs=94.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC--hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +.+.|.-.+..|++.+|...+..++.....+..+..  ..-+.+.++|+.++-.+++++.|.+.|+.++.        .|
T Consensus       455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------eh  526 (1018)
T KOG2002|consen  455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EH  526 (1018)
T ss_pred             HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HC
Confidence            344555567778999999999998877543333322  23356789999999999999999999988765        48


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~  410 (420)
                      |.+...+..||......++..+|...+.+++.+     ..++|.+..+++.+--..++
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~  579 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSE  579 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhh
Confidence            999999999997777789999999999999875     34678888877766555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=93.83  E-value=0.59  Score=49.95  Aligned_cols=90  Identities=16%  Similarity=0.017  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH-HHhcC---
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL-RITHG---  391 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~-~~~~G---  391 (420)
                      ++..|..++...|+++.|....++++.        ..|.-...|..|+.+|...|++++|.+++++..+.= ....|   
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~  567 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYG--------MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW  567 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence            345555555555555555555444422        123334467788999999999999999998766532 11111   


Q ss_pred             --------------CCCchHHHHHHHHHHHHHHHhc
Q 014710          392 --------------TNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       392 --------------~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                                    ..||...++..+|.++..+|..
T Consensus       568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                          3599999999999988887765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=93.80  E-value=2.1  Score=40.58  Aligned_cols=118  Identities=17%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710          269 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  348 (420)
Q Consensus       269 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  348 (420)
                      .++...+...+..+.-.|+...++++...+++++        |+-...+..-+..|...|+...|+.-.+.+-.+     
T Consensus       152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-----  218 (504)
T KOG0624|consen  152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-----  218 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----
Confidence            3444455555556667799999999988887753        444555666678899999999998866654322     


Q ss_pred             CCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       349 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ..+   --..+|++++++...|+.+.++...++++.     +.|||-...--+.+|..+
T Consensus       219 s~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  219 SQD---NTEGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             ccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHH
Confidence            222   345789999999999999999998888876     688996544433333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.75  E-value=0.29  Score=47.63  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+..+...|+|++|++++.+++..        .|.-...++++|.++..+|++++|+..+++|+.+
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456677789999999999999865        3444568899999999999999999999999886

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=93.73  E-value=0.52  Score=42.76  Aligned_cols=98  Identities=17%  Similarity=0.071  Sum_probs=67.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ++.+..++.   .++...+..|++.+|+...+++...        .|.=+..+.-+|-+|..+|++++|..-|.+|+++.
T Consensus        96 ~~~d~~ll~---~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~  164 (257)
T COG5010          96 YPKDRELLA---AQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA  164 (257)
T ss_pred             CcccHHHHH---HHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence            444444443   3777888899999999999987554        35556688889999999999999999999999875


Q ss_pred             HHhcC--CCCchHHHHHHHHHHHHHHHhccc
Q 014710          387 RITHG--TNSPFMKELILKLEEAQAEASYKL  415 (420)
Q Consensus       387 ~~~~G--~~h~~~~~~~~~l~~~~~~~~~~~  415 (420)
                      -...-  .++-....+...++.++..++..+
T Consensus       165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            43311  122222334455566666555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.72  E-value=1.1  Score=37.26  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF  351 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~  351 (420)
                      ..+...+......|++++++..+++++..        +|.-=.++..++.+|...|+..+|++++++....+..-+| ..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            33444455567789999999999988764        4444556677899999999999999999999999998888 66


Q ss_pred             ChHHHHHHH
Q 014710          352 HPLLGLQYY  360 (420)
Q Consensus       352 hp~~~~~l~  360 (420)
                      +|.+-..+.
T Consensus       135 s~~~~~l~~  143 (146)
T PF03704_consen  135 SPETRALYR  143 (146)
T ss_dssp             -HHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            666665443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=93.69  E-value=0.32  Score=34.87  Aligned_cols=54  Identities=15%  Similarity=0.143  Sum_probs=43.4

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +..++++++|++.+++++..     +|.   -...+...+.++...|++.+|.+.+.+++..
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALEL-----DPD---DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHh-----Ccc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45678999999999998764     344   4555667899999999999999999998854

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.67  E-value=0.3  Score=49.89  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      ..++..++......|++++|..++++++.+-        |. +..+..+|+++...|+.++|+..|.+|+.     +.|.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~  485 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPG  485 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Confidence            3566667777777899999999999998774        43 57899999999999999999999999976     4555


Q ss_pred             Cc
Q 014710          394 SP  395 (420)
Q Consensus       394 h~  395 (420)
                      +|
T Consensus       486 ~p  487 (517)
T PRK10153        486 EN  487 (517)
T ss_pred             Cc
Confidence            55

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.66  E-value=0.91  Score=42.90  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +-+....++.+|+|++|++-|.+...     +.|+|+.+.-   +-+.+|..+..|..|..-|..++.+-+.        
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~~---NRA~AYlk~K~FA~AE~DC~~AiaLd~~--------  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYHI---NRALAYLKQKSFAQAEEDCEAAIALDKL--------  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccchh---hHHHHHHHHHHHHHHHHhHHHHHHhhHH--------
Confidence            44567788999999999999888765     3566665543   3466889999999999989888766432        


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +..+|..=+.+-..+|+..||.+=++.+++
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence            233344444555566666777666666654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.61  E-value=0.25  Score=30.87  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      +++..|+.+....++|++|++-++++|.+.+.++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            4677899999999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.50  E-value=0.073  Score=39.76  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=39.9

Q ss_pred             hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          327 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       327 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      .|+|+.|+.++.+++.....     .+ -...++.||.++...|++++|..++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            58999999999998877532     23 455777799999999999999999988

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=93.37  E-value=4.4  Score=36.90  Aligned_cols=80  Identities=20%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEA  407 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~~G~-~h~~~~~~~~~l~~~  407 (420)
                      .+.|.+.+++++.+.+..+|+.||.+.....+.+..+.+ +|+.++|..+.++|++-.....+. +--.+.+....|.-+
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL  221 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL  221 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence            467899999999999999999999999999999988765 799999999988888766655441 112245544444444


Q ss_pred             HH
Q 014710          408 QA  409 (420)
Q Consensus       408 ~~  409 (420)
                      +-
T Consensus       222 rd  223 (236)
T PF00244_consen  222 RD  223 (236)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.30  E-value=0.23  Score=29.71  Aligned_cols=29  Identities=28%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +++..++.++..+|++++|++.+++++.+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            56788999999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.12  E-value=1.5  Score=33.51  Aligned_cols=81  Identities=15%  Similarity=0.087  Sum_probs=59.8

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      ...|++.+|++.+.+.......-..+.+ .....+..+++.+....|++++|+...++++.+.+..  .+...++..+..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~   86 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW   86 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence            3468999999988888877655444432 2344456778999999999999999999999998776  555666666666


Q ss_pred             hhHH
Q 014710          362 CGKL  365 (420)
Q Consensus       362 La~~  365 (420)
                      ++.+
T Consensus        87 ~~~l   90 (94)
T PF12862_consen   87 LANL   90 (94)
T ss_pred             HHHH
Confidence            5554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.10  E-value=0.18  Score=32.48  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      .++.||.++..+|++++|+..|+++++.     .|+++...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~   38 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAW   38 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHH
Confidence            5788999999999999999999999873     56666544

>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]

Probab=93.02  E-value=0.038  Score=44.49  Aligned_cols=39  Identities=33%  Similarity=0.825  Sum_probs=32.4

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHh--hchhh
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQVL   70 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~--EC~~~   70 (420)
                      ...|.-|++.....+|+.|.++ |||-.|.    +.|+.  +|..-
T Consensus         5 t~tC~ic~e~~~KYKCpkC~vP-YCSl~Cf----KiHk~tPq~~~v   45 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSVP-YCSLPCF----KIHKSTPQCETV   45 (157)
T ss_pred             eeeehhhhcchhhccCCCCCCc-cccchhh----hhccCCcccccc
Confidence            4689999998778999999997 9999997    57776  77543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=92.98  E-value=0.77  Score=47.49  Aligned_cols=86  Identities=14%  Similarity=0.063  Sum_probs=69.5

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      .++++|+++.+.++..+++        ++....++..++.+..+.+++..|++.+.+.+..        -|.-+..+.+|
T Consensus       496 ~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNl  559 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNL  559 (777)
T ss_pred             ccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhh
Confidence            4567888888888777654        6777888999999999999999999998877554        36667899999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +.+|...|+..+|...+++|++
T Consensus       560 s~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  560 STAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhh
Confidence            9999988777777777777765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.85  E-value=0.26  Score=45.60  Aligned_cols=60  Identities=12%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  344 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  344 (420)
                      .+|..+.+.|.++.|++-++.++.+        ++..-+++..|+.+|..+|++++|++.++++|++.
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence            4566677788899999988888764        77788899999999999999999999999998763

>smart00101 14_3_3 14-3-3 homologues

Probab=92.78  E-value=4.8  Score=36.80  Aligned_cols=60  Identities=12%  Similarity=0.039  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+.|.+.++.++++...-+|+.||.+....++.+..+.+ +++.++|..+.++|++-....
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~  204 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE  204 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            457888999999998888999999999999999998886 588999887777766655433

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.68  E-value=3.2  Score=41.98  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=88.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .++.-...+|+.++|++.++++...+.. +..-+   .-....++-.+..+++|++|.+++.++++.       ..=..+
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka  340 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKA  340 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHH
Confidence            3445556689999999999987653322 11111   123456777888899999999998877653       222577


Q ss_pred             HHHHHhhHHHHhhcCh-------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~-------~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ...|-.|..+..+|+.       ++|.+++.++-....+.-|..-|.=+=+..++++-..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~  400 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK  400 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence            7888889999999988       8999999999999999888777755545566555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.61  E-value=0.2  Score=29.58  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +++++|.++..+|++++|+.++++.++-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6899999999999999999999988764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.61  E-value=0.3  Score=31.44  Aligned_cols=29  Identities=14%  Similarity=0.059  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      .++..++.+|...|++++|.+++++++..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999998875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.43  E-value=0.36  Score=28.67  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVY  344 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  344 (420)
                      .++..++.++...|++++|++++++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            467789999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.23  E-value=3.2  Score=32.75  Aligned_cols=101  Identities=12%  Similarity=0.136  Sum_probs=60.6

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh--HH-HHHHHHH-HHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--LM-QTREKLI-KILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~--~~-~~~~~L~-~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .|..++.+|++-+|+++.+......     +++..  ++ .....+. .+-....+.+-...|..-+++.+.+-. .-+|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence            3556677899999999999887654     23322  22 2222222 223334667777788888888776654 3455


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .-|..+++||+-+--.-.|+++..--++++.
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            5587888877765444445555544444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.18  E-value=1.2  Score=43.13  Aligned_cols=87  Identities=9%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      .+|..+.+...++.++..-|.+++++.+.++.|..+    +...     ....||++......+++|+++|..|+++   
T Consensus       433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~-----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---  500 (564)
T KOG1174|consen  433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVN-----LHNHLGDIMRAQNEPQKAMEYYYKALRQ---  500 (564)
T ss_pred             cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccH-----HHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence            356777788889999999999999999988877654    3332     5678899999999999999999999874   


Q ss_pred             hcCCCCchHHHHHHHHHHHHHHHh
Q 014710          389 THGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       389 ~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                           .|--+..+.=|..++.++.
T Consensus       501 -----dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  501 -----DPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             -----CccchHHHHHHHHHHhccC
Confidence                 3334444445555555544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=92.16  E-value=2.3  Score=40.30  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      +....++-.|.+.+|+..|..+++.        +|....++..-+.+|...|+-+-|+.-+.++|...        |...
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--------pDF~  106 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--------PDFM  106 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------ccHH
Confidence            3344455567888888888888653        55555666677889999999999998888887764        6666


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      -+..+=|.+++.+|.+++|+.=+.+.++     +.|+...+.+...+|+-+
T Consensus       107 ~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  107 AARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence            6777778999999999999887777654     344444566666666554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.15  E-value=3.7  Score=37.63  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             hHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH-------------HHHHhcCCCCchHHHHHHHH
Q 014710          340 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-------------ILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       340 ~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~-------------i~~~~~G~~h~~~~~~~~~l  404 (420)
                      +.-+|+.+-+.. |.+-..+..+|.+++.+|+++||..+++.|+.             ++....|++.+.+.+....|
T Consensus       192 AfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  192 AFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            333444444333 33445778889999999999999999999987             44455677765555544443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.06  E-value=1.7  Score=39.33  Aligned_cols=104  Identities=11%  Similarity=0.012  Sum_probs=72.3

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ++.|.+..+..+.++|+.+|++.+.+.+.  +.....-...+..++.++.....|++|....++...++...-....+-.
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k  191 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK  191 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence            34555666677889999999999876432  2333445567788889999999999999999998888887765555533


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      +.  .-+-.+|+...+|..|+..+++..
T Consensus       192 ~~--va~ilv~L~~~Dyv~aekc~r~~~  217 (308)
T KOG1585|consen  192 AY--VAAILVYLYAHDYVQAEKCYRDCS  217 (308)
T ss_pred             HH--HHHHHHHhhHHHHHHHHHHhcchh
Confidence            32  222233445667888887777633

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.00  E-value=0.41  Score=28.53  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVY  344 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  344 (420)
                      +++..++.+|...|++++|..++++++++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            567889999999999999999999998864

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.90  E-value=1.5  Score=42.16  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .||.+|   .+...|+.++...+.|.+|..+++.++..-         .-+..+..+|.++..+|+..+|....++++..
T Consensus       323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            467777   566788999999999999999999776542         22447788999999999999999999999944


Q ss_pred             H
Q 014710          386 L  386 (420)
Q Consensus       386 ~  386 (420)
                      .
T Consensus       391 ~  391 (400)
T COG3071         391 T  391 (400)
T ss_pred             h
Confidence            3

>PRK15331 chaperone protein SicA; Provisional

Probab=91.71  E-value=1.2  Score=37.74  Aligned_cols=79  Identities=11%  Similarity=0.082  Sum_probs=61.9

Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.-....++..+..+.-+.+.|++++|..+++-+     ..|..+.+.   -++.||-.+..++++++|+..|..|..+
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L-----~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL-----CIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34556777888888888899999999999988754     235555555   3688999999999999999999998887


Q ss_pred             HHHhcCC
Q 014710          386 LRITHGT  392 (420)
Q Consensus       386 ~~~~~G~  392 (420)
                      -...++|
T Consensus       101 ~~~dp~p  107 (165)
T PRK15331        101 LKNDYRP  107 (165)
T ss_pred             ccCCCCc
Confidence            6554444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.62  E-value=7.8  Score=33.48  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             HHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhc----ChHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Q 014710          332 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLE  405 (420)
Q Consensus       332 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g----~~~eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~  405 (420)
                      ++.++.+.++.-++..+ .-+|....+++.||.++..++    +..+|..++.+|.+-++..  .-|+...+...+.+-.
T Consensus        46 es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   46 ESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            34444444444433322 125777889999999988764    4567888888888888865  3466666665544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.45  E-value=2.1  Score=40.89  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      .-+...++.++...|.+-+|.++|+.+..+.  +-.++-+..+..+.-+|.+|-+.|+.+.|..-|++|+.++.- .|..
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~gdr  282 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLA--LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LGDR  282 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hhhh
Confidence            3455678889999999999999999987764  455888999999999999999999999999999999998865 3544


Q ss_pred             C
Q 014710          394 S  394 (420)
Q Consensus       394 h  394 (420)
                      -
T Consensus       283 m  283 (518)
T KOG1941|consen  283 M  283 (518)
T ss_pred             H
Confidence            3

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.40  E-value=0.072  Score=31.35  Aligned_cols=28  Identities=29%  Similarity=0.731  Sum_probs=20.3

Q ss_pred             ccCccccCCCCCcCCCCCCcccccChhhch
Q 014710           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK   57 (420)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~   57 (420)
                      ..|..|.. .....|++|... |||-+|.+
T Consensus         3 ~~C~vC~~-~~kY~Cp~C~~~-~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGN-PAKYRCPRCGAR-YCSLACYK   30 (30)
T ss_dssp             EEETSSSS-EESEE-TTT--E-ESSHHHHH
T ss_pred             CCCccCcC-CCEEECCCcCCc-eeCcEeEC
Confidence            46788888 668899999996 99999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=91.37  E-value=3.4  Score=44.77  Aligned_cols=98  Identities=9%  Similarity=0.004  Sum_probs=70.3

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhh---hhc----CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQK---KLY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~---~~l----~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .-.+.+++++++|..+++++.....   ..+    ...|+...+....++..+...|++.+|.+..++++...       
T Consensus       374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-------  446 (822)
T PRK14574        374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-------  446 (822)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            3345678899999998888876211   112    25677888888999999999999999999888876543       


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                       |.-......+|.++...|...+|+..++.|..
T Consensus       447 -P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        447 -PANQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence             33344555777777777777777777755544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.31  E-value=4.5  Score=38.10  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      ++.+|...|+.+..    .++    ....+++.++.+.+.+|+|++|.+..++++..        .|.-...+.+++.+.
T Consensus       182 ~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  182 KYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCS  245 (290)
T ss_dssp             CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHH
Confidence            46788888877632    122    23455778899999999999999988876532        244455788999999


Q ss_pred             HhhcCh-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          367 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       367 ~~~g~~-~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ..+|+. +.+..++.+..    . ..|+||.+.++..+-+.-
T Consensus       246 ~~~gk~~~~~~~~l~qL~----~-~~p~h~~~~~~~~~~~~F  282 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLK----Q-SNPNHPLVKDLAEKEAEF  282 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCH----H-HTTTSHHHHHHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHH----H-hCCCChHHHHHHHHHHHH
Confidence            999998 55666666533    3 378999998877554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.25  E-value=0.34  Score=45.39  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=13.6

Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .++|...+..++++-++.-+++|+...
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            344444444555555555555555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.09  E-value=2.2  Score=35.35  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      +..-+....+.|+|++|++.++.+.    .-| +..|..-.+-+.|+.++...|++++|+..+++=++     +-|.||.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~----~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~   82 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALD----TRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH----hcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCC
Confidence            3455666778899999988777653    333 44555567889999999999999999988877554     4688886


Q ss_pred             HHHHHHHH
Q 014710          397 MKELILKL  404 (420)
Q Consensus       397 ~~~~~~~l  404 (420)
                      +--++.+.
T Consensus        83 vdYa~Y~~   90 (142)
T PF13512_consen   83 VDYAYYMR   90 (142)
T ss_pred             ccHHHHHH
Confidence            65544433

>PLN03077 Protein ECB2; Provisional

Probab=91.04  E-value=3.8  Score=44.93  Aligned_cols=128  Identities=15%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHh-----HHHHHHhcC-----
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT-----IPVYQRVYP-----  349 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~-----l~~~~~~~g-----  349 (420)
                      ......|.++++.++++......  -+.|    -...+..++.++.+.|++++|.++.+++     ..+|..+++     
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~  670 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH  670 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence            33445677778877777765322  1112    2355677778888888888887777664     111111111     


Q ss_pred             --------------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH-HHHhc-----------------CCCCchH
Q 014710          350 --------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH-----------------GTNSPFM  397 (420)
Q Consensus       350 --------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i-~~~~~-----------------G~~h~~~  397 (420)
                                    +-.|.-...+..|+.+|...|++++|.++.+.-.+- ++...                 ...||..
T Consensus       671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~  750 (857)
T PLN03077        671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI  750 (857)
T ss_pred             CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence                          112333345667788999999999999887765542 11111                 2469999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 014710          398 KELILKLEEAQAEASY  413 (420)
Q Consensus       398 ~~~~~~l~~~~~~~~~  413 (420)
                      .++..+|.++..+|+.
T Consensus       751 ~~i~~~l~~l~~~~~~  766 (857)
T PLN03077        751 KEINTVLEGFYEKMKA  766 (857)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998888764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.79  E-value=0.52  Score=45.96  Aligned_cols=116  Identities=18%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH------HHHHhh-hhcCCC--C-hhHHHHHHHHHHHHHHhhcHHH
Q 014710          263 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKM------IEKLQK-KLYHPF--S-VNLMQTREKLIKILMELEDWKE  332 (420)
Q Consensus       263 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~------~~~~~~-~~l~~~--h-~~~~~~~~~L~~~~~~~g~~~~  332 (420)
                      +.++.+..++..++++.-..-+.|++.+|++-.+.      ++-.++ +.--|.  + -.++.++.+|++-|.....+.+
T Consensus       140 ek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~e  219 (840)
T KOG2003|consen  140 EKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAE  219 (840)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHH
Confidence            34555666666666655445556777777664433      222222 221122  2 2366778888888887777777


Q ss_pred             HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |+..++-++.      ....|..|..-.++|.+++...++.+|+++|+-|++
T Consensus       220 alntyeiivk------nkmf~nag~lkmnigni~~kkr~fskaikfyrmald  265 (840)
T KOG2003|consen  220 ALNTYEIIVK------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD  265 (840)
T ss_pred             Hhhhhhhhhc------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence            7766554321      234466666777888888888888888888887765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.62  E-value=14  Score=34.44  Aligned_cols=125  Identities=16%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHH--------------
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL--------------  339 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~--------------  339 (420)
                      ..+.++......|++.++..++..++...     |.+   ..+...++..|...|+.+.|...+..              
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~  207 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQ  207 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHH
Confidence            33455566677888888888888886542     222   44555667777777776554433221              


Q ss_pred             -hHHHHHHh--cC---------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH----------------HHHHHhcC
Q 014710          340 -TIPVYQRV--YP---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHG  391 (420)
Q Consensus       340 -~l~~~~~~--~g---------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~----------------~i~~~~~G  391 (420)
                       -++..++.  .|         ...|.-...-+.||+.+...|+.++|.+.|-.-+                ++++. +|
T Consensus       208 a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~-~g  286 (304)
T COG3118         208 AQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA-FG  286 (304)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh-cC
Confidence             12222222  11         1345455677899999999999999988764322                23332 68


Q ss_pred             CCCchHHHHHHHHHHH
Q 014710          392 TNSPFMKELILKLEEA  407 (420)
Q Consensus       392 ~~h~~~~~~~~~l~~~  407 (420)
                      +.||.+..-..+|..+
T Consensus       287 ~~Dp~~~~~RRkL~sl  302 (304)
T COG3118         287 PADPLVLAYRRKLYSL  302 (304)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            8888777766666543

>smart00028 TPR Tetratricopeptide repeats

Probab=90.57  E-value=0.42  Score=27.02  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..++.+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35788999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.54  E-value=0.83  Score=37.12  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             HHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          321 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       321 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +.+....|+++.|++.+.++|.+.        |..+..|++=|+++--+|+.++|++=+.+|+.+-
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            446777899999999999998875        8889999999999999999999999999999753

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.73  E-value=5.5  Score=37.08  Aligned_cols=115  Identities=14%  Similarity=0.069  Sum_probs=77.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh---hcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..++.+|++..|...|.++..+     -|.++.+.-.   ++.++..+   .+-.++..++++++..       + |.=
T Consensus       163 g~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~al~~-------D-~~~  226 (287)
T COG4235         163 GRAYMALGRASDALLAYRNALRL-----AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQALAL-------D-PAN  226 (287)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHHHHhc-------C-Ccc
Confidence            34456778999999999999764     3566655443   34433332   3445666666655443       3 333


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                      ...++-||..+++.|++.+|...++.-++.    .-++.|-..-+...++..+...+.
T Consensus       227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~~~~~~~  280 (287)
T COG4235         227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARALAQRSA  280 (287)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHHHhcccc
Confidence            457888999999999999999888876654    556777777777777776665543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.56  E-value=0.69  Score=46.49  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +...|+.+|.-.|+|++|++.++.+|.+        .|.=...+.+||-++.+-.+.+||+..|++|+++
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence            4556777788889999999999988876        4888889999999999999999999999999985

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.51  E-value=0.83  Score=29.54  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +.||++|...|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6899999999999999999998874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=89.44  E-value=1.1  Score=44.16  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             HHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          337 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       337 ~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      -.++|.+.++++|+.||.+.+...--|-.|...|+++..++++.-|+.+-+..+.|-+|.+...+.--++.=+-|.
T Consensus       318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL  393 (615)
T KOG0508|consen  318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFML  393 (615)
T ss_pred             HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHh
Confidence            3578889999999999999988888888899999999999999999999999999999999887777776655443

>PLN03218 maturation of RBCL 1; Provisional

Probab=89.39  E-value=4.1  Score=45.50  Aligned_cols=54  Identities=11%  Similarity=0.040  Sum_probs=30.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  341 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  341 (420)
                      .+...|++++|+++|+.....   -+.|+    ..+++.|+..|.+.|++++|.+++.++.
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344557777777776665432   12222    3345566666666666666666655543

>PLN03218 maturation of RBCL 1; Provisional

Probab=89.34  E-value=5.4  Score=44.63  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710          316 TREKLIKILMELEDWKEALAYCQLT  340 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~  340 (420)
                      +++.++..|.+.|++++|.+++.++
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3444555555555555555555443

>KOG1337 consensus N-methyltransferase [General function prediction only]

Probab=88.81  E-value=0.57  Score=47.51  Aligned_cols=83  Identities=17%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHhhhcccccccC-----CCcccccchhhhccccCCCCcCCceeEEe-CCEEEEEEecCCCCCCcc--CCC
Q 014710          149 SINEIAENFSKLACNAHTICNS-----ELRPLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEG--QFD  220 (420)
Q Consensus       149 ~~~~i~~~~~~~~~N~~~i~~~-----~~~~~g~glyp~~s~~NHSC~PN~~~~f~-~~~~~vra~r~I~~Gee~--~~~  220 (420)
                      +-....-.+..+...+|.+...     .....-.++.|..-+.||+|.+.....+. ++.+.+++.++|.+|||+  +|+
T Consensus       198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG  277 (472)
T KOG1337|consen  198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG  277 (472)
T ss_pred             chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence            3344455666677777755322     22345578999999999999994443332 458999999999999995  687


Q ss_pred             hHhHHHHhc--Cc
Q 014710          221 DIQESAILE--GY  231 (420)
Q Consensus       221 ~~~~~~l~~--~~  231 (420)
                      ..-...|+.  ||
T Consensus       278 ~~~N~eLL~~YGF  290 (472)
T KOG1337|consen  278 PKSNAELLLHYGF  290 (472)
T ss_pred             CCchHHHHHhcCC
Confidence            654555543  55

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.67  E-value=2.5  Score=39.88  Aligned_cols=58  Identities=12%  Similarity=0.130  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          319 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       319 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      -|+.+|..+.....|+..+...++.+        |.-...+..+|.++..++++++|.++|+++++
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk  318 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLK  318 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence            34555555555555555554444432        33334444555555555555555555555554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.67  E-value=1.6  Score=33.22  Aligned_cols=55  Identities=25%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH----------------HHHHHhcCCCCchHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~----------------~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      +|.=....+.||..+...|++++|++.|-+.+                ++++. +|++||.+.....+|..+
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RRkL~~l   88 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRRKLASL   88 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHHHHHHH
Confidence            44445788999999999999999998877543                34444 799999999888888754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.60  E-value=9.7  Score=34.35  Aligned_cols=99  Identities=11%  Similarity=0.063  Sum_probs=57.5

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      |...+..++.++|+.-+++++.++...   .... -.+-+..|+.+|-. +.+++.|+.+++++-+-|   -|+.....+
T Consensus        80 A~~cykk~~~~eAv~cL~~aieIyt~~---Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y---k~ees~ssA  153 (288)
T KOG1586|consen   80 AANCYKKVDPEEAVNCLEKAIEIYTDM---GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY---KGEESVSSA  153 (288)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHhh---hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH---cchhhhhhH
Confidence            333444556666766666666654321   1111 11222345555554 377888888877764433   344443333


Q ss_pred             -HHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          357 -LQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       357 -~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                       ..+.+.|.....+++|++|+..|++..
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             356677888888899999998887643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=88.56  E-value=2.9  Score=42.87  Aligned_cols=96  Identities=19%  Similarity=0.083  Sum_probs=72.3

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .++.++.+..+.+++...++..+.+++.     +|.|..++.+   .+-.+..+|+-++|..+.+..+.        ..+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~   72 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL   72 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence            4456666667777777777777777763     4677766553   34556778999999998887765        344


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .-...+.-+|-++-.-.+|+||++.|+.|+.+
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            55567778899999999999999999999986

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.49  E-value=7.1  Score=38.11  Aligned_cols=123  Identities=17%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH------HhcC-------
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVYP-------  349 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~------~~~g-------  349 (420)
                      ...++.++|+=.|+.+..+        -|..++.+.-|...|...|.+++|..++..++..+.      .++|       
T Consensus       345 ~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d  416 (564)
T KOG1174|consen  345 IALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD  416 (564)
T ss_pred             HhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence            3345556665555555433        356678888899999999999998887776655432      2233       


Q ss_pred             ---------------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcc
Q 014710          350 ---------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  414 (420)
Q Consensus       350 ---------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~  414 (420)
                                     .-.|.+.-+-..+|.++..-|.++.++.+|++++.++...-  -|....+++....+....|++.
T Consensus       417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--LH~~Lgd~~~A~Ne~Q~am~~y  494 (564)
T KOG1174|consen  417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--LHNHLGDIMRAQNEPQKAMEYY  494 (564)
T ss_pred             chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH--HHHHHHHHHHHhhhHHHHHHHH
Confidence                           13455555666778888888999999999999998765431  3444555554444444444444


Q ss_pred             c
Q 014710          415 L  415 (420)
Q Consensus       415 ~  415 (420)
                      +
T Consensus       495 ~  495 (564)
T KOG1174|consen  495 Y  495 (564)
T ss_pred             H
Confidence            3

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=88.39  E-value=3  Score=41.29  Aligned_cols=107  Identities=17%  Similarity=0.067  Sum_probs=67.8

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      ....++..+|.+.+++++.+     -|+.   .-+..+++++|.+.|+..+|+....+.+.-        .|.-...+.-
T Consensus       350 ~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~  413 (484)
T COG4783         350 LLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDL  413 (484)
T ss_pred             HHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHH
Confidence            34567788888888888764     3444   334567899999999999998877765432        2333445555


Q ss_pred             hhHHHHhh-----------------cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          362 CGKLEWFL-----------------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       362 La~~~~~~-----------------g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      ||+.|..+                 |++++|...+.+|.+-    .|.+.|....+--.+.+.+
T Consensus       414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~  473 (484)
T COG4783         414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLR  473 (484)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHH
Confidence            66665555                 5555555555555443    4556776665555554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=88.20  E-value=5  Score=43.57  Aligned_cols=101  Identities=9%  Similarity=-0.067  Sum_probs=62.3

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH---------hcC--C
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------VYP--Q  350 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---------~~g--~  350 (420)
                      ....+++++++.+++..++        .+|..+..+..++.++.+.+++.+|...  .++++...         ++.  .
T Consensus        41 ~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~  110 (906)
T PRK14720         41 YKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL  110 (906)
T ss_pred             HHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence            3356788888888876654        2444455555566677776666655544  33222111         110  1


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      +++.--.+++.||..|-.+|+.++|...|++++++=     |+++.+
T Consensus       111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a  152 (906)
T PRK14720        111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI  152 (906)
T ss_pred             hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence            233334588888888888899999988888887754     555543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=88.18  E-value=1.8  Score=44.26  Aligned_cols=64  Identities=31%  Similarity=0.311  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ++.++.-|++.|...|++++|+++..+++..        .|.....+..-|+++-..|++.+|...+.+|..
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~  256 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARE  256 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5788899999999999999999999988776        477788888889999999999999998876554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.90  E-value=4.9  Score=29.44  Aligned_cols=53  Identities=19%  Similarity=0.051  Sum_probs=37.5

Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH--hcCCCCchHHH-HHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA  407 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~--~~G~~h~~~~~-~~~~l~~~  407 (420)
                      .|..+...|.-.-..|++++|..+|.+|++.+..  .+|.-.|...+ +..++.+.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY   60 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY   60 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            4556667777777899999999999999999988  55533333333 44555444

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=87.87  E-value=3.2  Score=45.05  Aligned_cols=64  Identities=13%  Similarity=-0.069  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ++..||.+|-.+|++++|.+.++++|..-        |.=+.++.++|-.+... ++++|+.++.+|+..+-.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            56677777888888888887777776653        44555777788877777 888888888888776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.57  E-value=1  Score=26.29  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      ++..++.++...|++++|++++++++.-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5678899999999999999999988764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.47  E-value=0.38  Score=29.12  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=22.9

Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAI  376 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~  376 (420)
                      +|.-...+++||.++...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            5777889999999999999999986

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.43  E-value=0.81  Score=25.69  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=21.5

Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      ...+.||.++..+|+.++|+..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3568899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=87.12  E-value=7.8  Score=38.78  Aligned_cols=90  Identities=16%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC----C----------
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----H----------  352 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----h----------  352 (420)
                      +.+.-++.-++++++        ++....++.-|+.-  ...-..+|.++++++++.-+..+|..    |          
T Consensus       183 np~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  183 NPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             CHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            444555666666654        34444444333321  12345677777777777777766642    1          


Q ss_pred             ---hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          353 ---PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       353 ---p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                         ....++-..||...+++|+.+||++++++-++..
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~  289 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF  289 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence               1124556778999999999999999988766543

The molecular function of this protein is uncertain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.07  E-value=4.9  Score=38.35  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  359 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l  359 (420)
                      +.+.+..++.-|+.+++.....-       .-.--.+-..++..+..+|+|++|+..+.-+..       .+. .-+...
T Consensus        30 edfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~-~~~el~   94 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDD-APAELG   94 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCC-CCcccc
Confidence            33455667778887766554321       111134455688899999999999887665422       111 124456


Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  406 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~  406 (420)
                      .+||..++.+|.|.||.....+|         ++.|....++..++.
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfhlah  132 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFHLAH  132 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHHHHH
Confidence            78899999999999988776654         455555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.00  E-value=6.2  Score=34.18  Aligned_cols=72  Identities=17%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      .+-..+..++..|.+.||++.|++.+.++.+     |-..--.+....+.+-.+....+++.....++.+|..+++.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-----~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARD-----YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            3456678899999999999999999988643     22333456677888888889999999999999999999988

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=86.91  E-value=6.6  Score=40.57  Aligned_cols=64  Identities=16%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .++.....+.+....+++|..++.++..         .--+...+++-+.+.+.+|+.++|+.++++|++.+-
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~---------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp  682 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARS---------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP  682 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhc---------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            3344444455555666666666665533         223445667777777778888888888888877653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.77  E-value=4.3  Score=38.22  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...++++.|.+.++.....      ..+-.+.++......++...+.+.+|..+++.+.+    .+    +.....++.+
T Consensus       142 L~~~R~dlA~k~l~~~~~~------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~----~~t~~~lng~  207 (290)
T PF04733_consen  142 LKMNRPDLAEKELKNMQQI------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KF----GSTPKLLNGL  207 (290)
T ss_dssp             HHTT-HHHHHHHHHHHHCC------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cc----CCCHHHHHHH
Confidence            3457778887777665322      23333444333333333333468888887776532    12    3345668899


Q ss_pred             hHHHHhhcChHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |.+++.+|+++||...+.+|+.
T Consensus       208 A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  208 AVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999999864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.53  E-value=4.7  Score=37.45  Aligned_cols=74  Identities=23%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      +.+....+..|...|.+.+|.+++++++..        ||..-.....|-.++..+|+--+|.+.|.+-...+++.+|-+
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~  350 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID  350 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence            445566778889999999999999998765        777777788888889999999999999999999999999976


Q ss_pred             Cc
Q 014710          394 SP  395 (420)
Q Consensus       394 h~  395 (420)
                      -.
T Consensus       351 vd  352 (361)
T COG3947         351 VD  352 (361)
T ss_pred             cc
Confidence            44

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.50  E-value=5.1  Score=40.03  Aligned_cols=89  Identities=10%  Similarity=-0.050  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCC-----------------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFS-----------------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h-----------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      ...++.++++++++..+..++...                 ...+.++..|+...-++|+.++|+++.+.++...    |
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~----p  290 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF----P  290 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC----C
Confidence            356788888888776554444321                 1235567789999999999999999998876543    3


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      .  -......++|...+++++.|.++..++.+
T Consensus       291 ~--~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  291 N--LDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             c--cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            2  12445778888889999998888777766

The molecular function of this protein is uncertain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=86.26  E-value=3.9  Score=43.26  Aligned_cols=74  Identities=22%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      .+.|..++|+.+|+++..                ++-|-.+|..+|.|.+|.+.++.          .+-..+-..+++-
T Consensus       811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y  864 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY  864 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence            444666677777766642                12233457778999999887653          3445566788999


Q ss_pred             hHHHHhhcChHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEA  382 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A  382 (420)
                      |+-+-+.++.+.|+++|+|+
T Consensus       865 A~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhc
Confidence            99999999999999999974

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.14  E-value=28  Score=33.91  Aligned_cols=84  Identities=14%  Similarity=0.289  Sum_probs=63.1

Q ss_pred             cCHHHHHHHHH----HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC---------------------CChhHH
Q 014710          260 RSKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLM  314 (420)
Q Consensus       260 ~~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~---------------------~h~~~~  314 (420)
                      .+++.+..+.+    .+.+++..+.....+|+...|.++.++++-..++.+|+                     .|-...
T Consensus        24 ~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff  103 (360)
T PF04910_consen   24 HDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF  103 (360)
T ss_pred             cCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence            35666666665    37888888888888999999999999998776654443                     344555


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      .+...-+..+++.|-|..|+++|+-++.+
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsL  132 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSL  132 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            66677777888889999999998876543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=86.14  E-value=3.9  Score=40.22  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .+.++.|+.+++++.+.        +|.   +...|+.++...++-.+|++...+++        ...|.-+..+...|.
T Consensus       182 t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAE  242 (395)
T ss_pred             cccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHH
Confidence            35678888888887543        222   23347888888888889999888887        234444888888899


Q ss_pred             HHHhhcChHHHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .+...++++.|++..++|..+.
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls  264 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS  264 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.06  E-value=5.6  Score=35.63  Aligned_cols=69  Identities=17%  Similarity=0.078  Sum_probs=57.1

Q ss_pred             HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      ....+++|++.+.-++..++ +.+..+-..|..+.++|=++-.+|+.++...++++|+..++..+-.+..
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            34577888888888877764 4456667999999999999999999999999999999999998865543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=85.91  E-value=8.7  Score=33.46  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=63.0

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPL  354 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~  354 (420)
                      ...+....+.|++.+|...|++.++.   ++ ..++   .++..++++....|++..|....+++.+.   - | .-.| 
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG---~f-A~d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~-pa~r~p-  160 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSG---IF-AHDA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEY---N-PAFRSP-  160 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhcc---cc-CCCH---HHHHHHHHHHHhhccHHHHHHHHHHHhhc---C-CccCCC-
Confidence            34555666778999999998888642   12 2222   23345778888899999888776654221   1 2 1112 


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                        ....-+|.++..+|++.+|+..++.|++-
T Consensus       161 --d~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         161 --DGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             --CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence              23344678888899999999888887763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=85.53  E-value=17  Score=37.87  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=57.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChHHHHHHHHhh
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCG  363 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La  363 (420)
                      -|+|++|.++|-.+-                -++-...++..+|||-.-.++++       .--+ .+....-.+..++|
T Consensus       747 ~g~feeaek~yld~d----------------rrDLAielr~klgDwfrV~qL~r-------~g~~d~dD~~~e~A~r~ig  803 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDAD----------------RRDLAIELRKKLGDWFRVYQLIR-------NGGSDDDDEGKEDAFRNIG  803 (1189)
T ss_pred             hcchhHhhhhhhccc----------------hhhhhHHHHHhhhhHHHHHHHHH-------ccCCCcchHHHHHHHHHHH
Confidence            366777766654432                12334556677777755544433       2222 34555556677777


Q ss_pred             HHHHhhcChHHHHHHHHH------------------HHHHHHHhcCCCCchHHHHHHH
Q 014710          364 KLEWFLGDTENAIKSMTE------------------AVEILRITHGTNSPFMKELILK  403 (420)
Q Consensus       364 ~~~~~~g~~~eA~~~l~~------------------A~~i~~~~~G~~h~~~~~~~~~  403 (420)
                      ....++..+++|.++|.+                  -++.+.+++.++|++.-.+-.+
T Consensus       804 ~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~m  861 (1189)
T KOG2041|consen  804 ETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADM  861 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHH
Confidence            777777777777777653                  4567778888888866444333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=85.51  E-value=13  Score=29.82  Aligned_cols=85  Identities=14%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHH--hhcHHHHHHHHHHhHHHHHHhcCCC---Ch-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILME--LEDWKEALAYCQLTIPVYQRVYPQF---HP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       314 ~~~~~~L~~~~~~--~g~~~~A~~~~~~~l~~~~~~~g~~---hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ..++..|++.-.+  -|.|++|..-|+++.++.+.+=++.   |- .=+..+-.|+.++..+|+|++++..-.+|+.-+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            3445555554443  3789999999999999987665432   22 3456777889999999999999999999999998


Q ss_pred             HhcCCCCchHHH
Q 014710          388 ITHGTNSPFMKE  399 (420)
Q Consensus       388 ~~~G~~h~~~~~  399 (420)
                      +. |+-|..-..
T Consensus        87 RR-GEL~qdeGk   97 (144)
T PF12968_consen   87 RR-GELHQDEGK   97 (144)
T ss_dssp             HH---TTSTHHH
T ss_pred             hc-cccccccch
Confidence            85 877765543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=85.21  E-value=0.72  Score=31.85  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhH
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHR   64 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~   64 (420)
                      +.+|-.|++..++-       -.|||++|++..++.++
T Consensus         3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k~qk   33 (59)
T PF09889_consen    3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRKRQK   33 (59)
T ss_pred             CCcCCcCCCcCCcc-------hhhhCHHHHHHHHHHHH
Confidence            57899998886531       25999999998655433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.00  E-value=5.2  Score=27.01  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=32.7

Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  406 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~  406 (420)
                      .+|.||..+..+|+|++|..+...++++     -|+++...++...+++
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~   46 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIED   46 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHH
Confidence            5788999999999999999999988764     4666666666555543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.92  E-value=6.3  Score=29.90  Aligned_cols=57  Identities=18%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH---------------HHHhcCCCChHHHHHHHHhhHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------YQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      +|.=..++..++..+...|++++|++.+..++..               +=.++|..||.+...-.+|+.++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence            4444578888999999999999998866555433               22456888999998888888775

>PLN03077 Protein ECB2; Provisional

Probab=84.90  E-value=5  Score=44.05  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=61.4

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      +...|+.++|++++++...   .-+.|+...    +..+..++.+.|++++|.+++..+...    +| ..|.. .+|..
T Consensus       564 ~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~y~~  630 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVE---SGVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KHYAC  630 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHH---cCCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HHHHH
Confidence            3456788888888877653   223444333    445667888899999999988876433    22 23333 57888


Q ss_pred             hhHHHHhhcChHHHHHHHHH
Q 014710          362 CGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       362 La~~~~~~g~~~eA~~~l~~  381 (420)
                      |..++...|+++||..++++
T Consensus       631 lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHH
Confidence            89999999999999998876

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=84.89  E-value=0.67  Score=47.29  Aligned_cols=39  Identities=31%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             ccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCCh
Q 014710          183 ISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~  221 (420)
                      +=+.|||=.|||..-.   .| +++-++|.|.|.+|||++++|
T Consensus       666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDY  708 (739)
T KOG1079|consen  666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDY  708 (739)
T ss_pred             hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeee
Confidence            3467999999997652   23 578899999999999998654

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.82  E-value=3.9  Score=39.37  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHhhhcccccc----------cCCCcccccchhhhccccCCCCc-CCceeEEeCCEEEEEEecCCCCCC
Q 014710          147 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA  215 (420)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~----------~~~~~~~g~glyp~~s~~NHSC~-PN~~~~f~~~~~~vra~r~I~~Ge  215 (420)
                      .++.+..+.+++.+..-+|-|.          +.+....|-..-|.+-++||.=. -|+...++++.+.+.|.|+|++|+
T Consensus       173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd  252 (466)
T KOG1338|consen  173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD  252 (466)
T ss_pred             ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence            4677888888888877788653          12245789999999999999877 788888888999999999999999


Q ss_pred             ccCCC
Q 014710          216 EGQFD  220 (420)
Q Consensus       216 e~~~~  220 (420)
                      |+.-+
T Consensus       253 ev~n~  257 (466)
T KOG1338|consen  253 EVDNS  257 (466)
T ss_pred             ccccc
Confidence            97533

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.61  E-value=22  Score=32.61  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710          284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  363 (420)
Q Consensus       284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  363 (420)
                      .+|+-.+|++.+...++..     +++   .+++..|+.+|...|+|+.|.-.+++++-+- =+-|..|-.+|..+|.+|
T Consensus       132 a~GK~l~aIk~ln~YL~~F-----~~D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKF-----MND---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHh-----cCc---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh
Confidence            3566666766555544432     122   4677889999999999999987777664331 111223334444444444


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHH
Q 014710          364 KLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       364 ~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .    ..+++-|.++|.+|+++-.
T Consensus       203 g----~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  203 G----AENLELARKYYERALKLNP  222 (289)
T ss_pred             h----HHHHHHHHHHHHHHHHhCh
Confidence            3    4567779999999998754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=84.20  E-value=11  Score=39.61  Aligned_cols=88  Identities=11%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh
Q 014710          290 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  369 (420)
Q Consensus       290 ~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~  369 (420)
                      ++++.+++++.     +.|+||   .+...++--|..+++.+.|+++++++|.+    -|++|+.   .+.-||.+.-..
T Consensus       462 kslqale~av~-----~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~  526 (799)
T KOG4162|consen  462 KSLQALEEAVQ-----FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQ  526 (799)
T ss_pred             HHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhh
Confidence            33444444433     467777   55667788888899999999999998765    2555554   566677888889


Q ss_pred             cChHHHHHHHHHHHHHHHHhcCC
Q 014710          370 GDTENAIKSMTEAVEILRITHGT  392 (420)
Q Consensus       370 g~~~eA~~~l~~A~~i~~~~~G~  392 (420)
                      +++.+|+++..-|++-...-||-
T Consensus       527 kr~~~Al~vvd~al~E~~~N~~l  549 (799)
T KOG4162|consen  527 KRLKEALDVVDAALEEFGDNHVL  549 (799)
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhh
Confidence            99999999988888765554443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.99  E-value=9.4  Score=28.19  Aligned_cols=61  Identities=13%  Similarity=0.065  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc---------hHHHHHHHHHHHHHHHhcc
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP---------FMKELILKLEEAQAEASYK  414 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~---------~~~~~~~~l~~~~~~~~~~  414 (420)
                      ..|+..-+.|.-+-+.|+.++|+.+|+++++++.....-..|         ....+..+|...+.+++++
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~R   75 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTR   75 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666677899999999999999999988765552         2244556666666666654

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.84  E-value=1.4  Score=26.60  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALA  335 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~  335 (420)
                      +|.-..++.+|+.+|...|++++|++
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            34445678899999999999999863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=83.77  E-value=10  Score=40.49  Aligned_cols=58  Identities=14%  Similarity=-0.009  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      .+..++++|.+.|++++|.++.+++         +..|. ...+..|..++...|+++.|...+++.+
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~---------~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA---------PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            3455556666666666666554332         11222 2245666666666677777766665543

>PRK11906 transcriptional regulator; Provisional

Probab=83.37  E-value=7.1  Score=38.80  Aligned_cols=68  Identities=9%  Similarity=-0.045  Sum_probs=56.1

Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +++.++.   ++..++.++...|+++.|...+++++.+        +|..+..++..|.+....|+.++|...+++|++
T Consensus       333 ld~~Da~---a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        333 ITTVDGK---ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             cCCCCHH---HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4555554   3445677777888899999999998766        699999999999999999999999999999766

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=82.82  E-value=1.1  Score=24.72  Aligned_cols=24  Identities=21%  Similarity=0.576  Sum_probs=18.3

Q ss_pred             CCCCCCCcccCCCCCccccCCCCC
Q 014710          235 DDGCSGFLLRDSDDKGFTCQQCGL  258 (420)
Q Consensus       235 c~~C~~~~~~~~~~~~~~C~~C~~  258 (420)
                      |..|...+.|......|.|++||.
T Consensus         1 C~sC~~~i~~r~~~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCcccCceEeCCCCCC
Confidence            567877777666667799999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=82.72  E-value=5.7  Score=36.20  Aligned_cols=58  Identities=14%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHH
Q 014710          289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQR  346 (420)
Q Consensus       289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~  346 (420)
                      ++|.+.|+.+..+....++|.||..+.+..+.+..|.. .|+.++|.++++++++-...
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            46778888888888888999999999999888877655 69999999999998776543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=82.68  E-value=0.77  Score=31.93  Aligned_cols=11  Identities=36%  Similarity=0.969  Sum_probs=9.5

Q ss_pred             cccChhhchhh
Q 014710           49 WYCGSNCQKLD   59 (420)
Q Consensus        49 ~yCs~~C~~~~   59 (420)
                      .|||+.|+.-|
T Consensus        26 PFCS~RCk~ID   36 (62)
T PRK00418         26 PFCSKRCQLID   36 (62)
T ss_pred             CcccHHHHhhh
Confidence            59999999865

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.51  E-value=11  Score=27.48  Aligned_cols=57  Identities=19%  Similarity=0.158  Sum_probs=40.4

Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH--GTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~--G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      .|..+...|.-+-..|++++|+.+|++|.+.|....  -||++.-.-...++.+....+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Ra   63 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRI   63 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            455666667777789999999999999999887663  356665444556666554433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=82.49  E-value=7.2  Score=40.88  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHH--HHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      ..+|.+.+|.+.|..++.     +.|+|+..+.   .++.++...|+-..|..  +...++.    +-|.+|    ..++
T Consensus       695 ~~~~~~~EA~~af~~Al~-----ldP~hv~s~~---Ala~~lle~G~~~la~~~~~L~dalr----~dp~n~----eaW~  758 (799)
T KOG4162|consen  695 EVKGQLEEAKEAFLVALA-----LDPDHVPSMT---ALAELLLELGSPRLAEKRSLLSDALR----LDPLNH----EAWY  758 (799)
T ss_pred             HHHHhhHHHHHHHHHHHh-----cCCCCcHHHH---HHHHHHHHhCCcchHHHHHHHHHHHh----hCCCCH----HHHH
Confidence            345667777777766654     5688877665   56777888886555554  5555433    333333    4899


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .||.+...+|+.++|.+.|+-|+.+-
T Consensus       759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  759 YLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHhhc
Confidence            99999999999999999999888754

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.96  E-value=23  Score=32.38  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      ..+...+|..|...|+|++|+++++.+...|++  .++.......+..|...+..+|+.++.+.+.-+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            345568999999999999999999999666653  367788888999999999999998886655433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=81.93  E-value=5.8  Score=34.49  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .+..-+..|+.....+|++.+|..++++++...   | ...+   -.+..+|++++..++..+|...|++-.+--
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~---f-A~d~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI---F-AHDA---AMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c-CCCH---HHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            345566778999999999999999999886531   1 2222   356788999999999999998888765543

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.74  E-value=0.75  Score=29.06  Aligned_cols=11  Identities=36%  Similarity=1.026  Sum_probs=9.0

Q ss_pred             ccccChhhchh
Q 014710           48 VWYCGSNCQKL   58 (420)
Q Consensus        48 ~~yCs~~C~~~   58 (420)
                      |.|||+.|+..
T Consensus        31 VkYCS~rCR~~   41 (42)
T PF10013_consen   31 VKYCSDRCRRR   41 (42)
T ss_pred             hccHHHHhccC
Confidence            57999999863

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.59  E-value=46  Score=31.54  Aligned_cols=75  Identities=13%  Similarity=-0.019  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC---CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g---~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      -.+...+..||.+|-.-|+|+.|.+...    ....--|   .+--..+..+.++|++|++.|+..+|+.+..+|-=.+.
T Consensus       100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~----~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a  175 (399)
T KOG1497|consen  100 EQVASIRLHLASIYEKEQNWRDAAQVLV----GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA  175 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence            3466788899999999999999976433    3322223   23345566778899999999999999999998865554


Q ss_pred             Hh
Q 014710          388 IT  389 (420)
Q Consensus       388 ~~  389 (420)
                      ..
T Consensus       176 ~~  177 (399)
T KOG1497|consen  176 ES  177 (399)
T ss_pred             cc
Confidence            44

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.45  E-value=38  Score=30.74  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      +|+.|-..|.++-..+.+. + +-.+...++-..+..|.. ++..+|+....+++++|-..  +.-..-+.....+|.+|
T Consensus        49 ~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiy  123 (288)
T KOG1586|consen   49 NWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIY  123 (288)
T ss_pred             hHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHH
Confidence            4455555555554443332 1 334455555555555544 58899999999999988654  33344566667778887


Q ss_pred             Hh-hcChHHHHHHHHHHHHHHHHh
Q 014710          367 WF-LGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       367 ~~-~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      -. +-++++|+.+|++|-+-+...
T Consensus       124 Esdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen  124 ESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHcch
Confidence            64 488999999999998877654

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=81.42  E-value=14  Score=37.47  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh-cCCCC
Q 014710          331 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNS  394 (420)
Q Consensus       331 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~-~G~~h  394 (420)
                      ..+++++.+++...+.+|+..|..   -|.-+|--+...+++.+|+..+.+|-+++... |+.+.
T Consensus       296 ~~~~~l~~~AI~sa~~~Y~n~HvY---PYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD  357 (618)
T PF05053_consen  296 PTPLELFNEAISSARTYYNNHHVY---PYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED  357 (618)
T ss_dssp             --HHHHHHHHHHHHHHHCTT--SH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCccc---cceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence            357899999999999999977753   56677888889999999999999998887764 44444

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=81.34  E-value=48  Score=32.57  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=66.4

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH--hhcHHHHHHHHHHhHHHHHH--------
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME--LEDWKEALAYCQLTIPVYQR--------  346 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~--~g~~~~A~~~~~~~l~~~~~--------  346 (420)
                      +.|..++..++|..|.+++..+...    +++...  ++.+..|+..|..  .-++++|.+++++.+.....        
T Consensus       136 ~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l  209 (379)
T PF09670_consen  136 RRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGL  209 (379)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence            4455566788999999998888653    444333  5666667666664  45777888777765542111        


Q ss_pred             ------------hcCC--------C--ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH----hcCCCC
Q 014710          347 ------------VYPQ--------F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNS  394 (420)
Q Consensus       347 ------------~~g~--------~--hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~----~~G~~h  394 (420)
                                  +.+.        .  .+.+..-++..|.-=...|+|+.|.-.+-+|++++..    .||-+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t  283 (379)
T PF09670_consen  210 KELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDT  283 (379)
T ss_pred             HHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                        1110        0  1222222222233333479999999999998886544    466443

>PRK01343 zinc-binding protein; Provisional

Probab=81.33  E-value=1.1  Score=30.53  Aligned_cols=13  Identities=23%  Similarity=0.833  Sum_probs=10.5

Q ss_pred             cccccChhhchhh
Q 014710           47 VVWYCGSNCQKLD   59 (420)
Q Consensus        47 ~~~yCs~~C~~~~   59 (420)
                      +..|||+.|+.-|
T Consensus        23 ~rPFCS~RC~~iD   35 (57)
T PRK01343         23 AYPFCSERCRDID   35 (57)
T ss_pred             CCcccCHHHhhhh
Confidence            4469999999875

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=81.28  E-value=7.3  Score=38.35  Aligned_cols=73  Identities=18%  Similarity=0.193  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710          318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  390 (420)
Q Consensus       318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~  390 (420)
                      -.|.+++.-+|||..|++....+---...+|..--+.....+|.+|-+|+.+++|.+|+..+...+--+.++-
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455677788999999998765544444566655555666889999999999999999999999888777764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.52  E-value=1.1  Score=42.51  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ...--.|..+..+|.+++|++.+-.++.+        ++....++.+=+.++..++.+..|+.-|..++.+=        
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------  178 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------  178 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccC--------
Confidence            33344566778889999999988877653        66667777777888999999999998888776652        


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |..+.-|--=+.+...+|++++|...|+.|..
T Consensus       179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k  210 (377)
T KOG1308|consen  179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACK  210 (377)
T ss_pred             cccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence            22222222223444456777777777776654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=80.50  E-value=0.84  Score=44.81  Aligned_cols=71  Identities=7%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             HHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh
Q 014710          298 IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  368 (420)
Q Consensus       298 ~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~  368 (420)
                      ++-+.+++|||.|+++.....--+-+|...|+++..+++-+-+|++..+.+.+-+|.++..+...|.+...
T Consensus       321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            34566789999999877655555667889999999999999999999999999999999999999887543

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.39  E-value=12  Score=27.48  Aligned_cols=56  Identities=14%  Similarity=0.047  Sum_probs=38.4

Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH--GTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~--G~~h~~~~~~~~~l~~~~~~  410 (420)
                      .|..+..-|.-.-..|++++|+.+|.+|++.|....  .+|...-..+..++.+....
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~R   62 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDR   62 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            455666667777789999999999999999887743  34444333344555555443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.25  E-value=53  Score=35.42  Aligned_cols=105  Identities=13%  Similarity=0.063  Sum_probs=71.8

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHH-----HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM-----QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~-----~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .|....++..+++|..+..++....    ++.+....     ..-.--+.+....|+.+.|.++++.++..   +-+...
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~---L~~~~~  493 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFL----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ---LPEAAY  493 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHh----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cccccc
Confidence            3444455677788877766665543    33222222     21122234566679999999999987654   233445


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ......+..+|.+.+-.|++++|..+.++|.++.+..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence            5666778888999999999999999999999998874

>KOG4317 consensus Predicted Zn-finger protein [Function unknown]

Probab=80.23  E-value=0.76  Score=42.44  Aligned_cols=40  Identities=28%  Similarity=0.727  Sum_probs=32.0

Q ss_pred             CCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhch
Q 014710           24 SSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (420)
Q Consensus        24 ~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~   68 (420)
                      ......|.-|..+-.-..||+|... |||-.|-+    .|+..|.
T Consensus         4 ts~~~~C~ic~vq~~~YtCPRCn~~-YCsl~CYr----~h~~~Cs   43 (383)
T KOG4317|consen    4 TSSFLACGICGVQKREYTCPRCNLL-YCSLKCYR----NHKHSCS   43 (383)
T ss_pred             CCceeeccccccccccccCCCCCcc-ceeeeeec----CCCccch
Confidence            3456789999988666999999995 99999985    5666684

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=80.23  E-value=4.7  Score=35.06  Aligned_cols=51  Identities=18%  Similarity=-0.056  Sum_probs=43.4

Q ss_pred             hcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          347 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       347 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      .-|...|.....+.+|..-|...|+++-|...-+.|+.-+..+.|.+||.+
T Consensus       131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            445789999999999999999999999999999999999999999999964

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=80.07  E-value=2.1  Score=42.39  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      -.+|...+....|+.|+.+|.+++.+     +|+.......+   +.++...+++..|+.-+.++++.        .|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANR---ALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechh---hhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34566677778999999999999874     45554444333   36788889999998888777655        4888


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ...|+.=|.+.+.++.+.+|...|++...
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~  100 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKK  100 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence            88888888888888888888877776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		2e-34
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		2e-31
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		1e-30
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		1e-30
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		8e-28
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-27
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		1e-27
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		1e-27
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-27
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		4e-26
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		1e-18

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 37/422 (8%)
Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63  HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +  L +    S T  +            +       T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y  +D   
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYPTED--- 249
Query: 239 SGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCG 286
               LRDS      C++C      ++K E++K++S     + + +               
Sbjct: 250 RNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAK 309
Query: 287 NHQEVVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPV 343
           +++      ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369
Query: 344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK 403
           Y + YP +   +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429
Query: 404 LE 405
           +E
Sbjct: 430 IE 431

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 191/416 (45%), Gaps = 32/416 (7%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203
Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLR 244
           ++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       LR
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR---LR 255
Query: 245 DSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVV 292
           DS      CQ+C      ++K EI+K++      + + +               +++   
Sbjct: 256 DSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPS 315
Query: 293 STYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP 349
              ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP
Sbjct: 316 ELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYP 375
Query: 350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
            +   +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 376 LYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 192/418 (45%), Gaps = 36/418 (8%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR--- 253
Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
           LRDS      CQ+C      ++K EI+K++      + + +               +++ 
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313
Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
                ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  Y + 
Sbjct: 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKH 373
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
           YP +   +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 192/418 (45%), Gaps = 36/418 (8%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFL 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +D       
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEE-----VFTSYIDLLYPTEDRNDR--- 253
Query: 243 LRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQE 290
           LRDS      CQ+C      ++K EI+K++      + + +               +++ 
Sbjct: 254 LRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKS 313
Query: 291 VVSTYKMIEKLQKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 347
                ++ E  Q+K+   F   +V ++    + + + + ++DW+ AL Y Q  I  Y + 
Sbjct: 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKH 373
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
           YP +   +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 374 YPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 29  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 89  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 139
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 140 EDKKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 197
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E    + D+     +    L  
Sbjct: 198 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 257
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
             C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q 
Sbjct: 258 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 313
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
           ++S+    E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +
Sbjct: 314 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 364
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 365 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 407

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 87  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E    + D+     +    L  
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
             C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q 
Sbjct: 256 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 311
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
           ++S+    E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +
Sbjct: 312 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 362
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 363 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 87  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E    + D+     +    L  
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
             C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q 
Sbjct: 256 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 311
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
           ++S+    E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +
Sbjct: 312 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 362
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 363 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 88  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 139 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 196
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E    + D+     +    L  
Sbjct: 197 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 256
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
             C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q 
Sbjct: 257 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 312
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
           ++S+    E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +
Sbjct: 313 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 63  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 123 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 173
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 174 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 231
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDDI-----QESAILEG 230
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E    + D+     +    L  
Sbjct: 232 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 291
Query: 231 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 290
             C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q 
Sbjct: 292 QYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QA 347
Query: 291 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVY 348
           ++S+    E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +
Sbjct: 348 IISSNS--ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 398
Query: 349 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 399 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 441

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 172/404 (42%), Gaps = 45/404 (11%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXX-QNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 88  CKCL--------KSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIA---------ENFSKLACNAHTICNSELRPLG 176
           E +      +  LV     +    I + +         E F+K+ CN+ TICN+E + +G
Sbjct: 139 EDR---KEGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEXQEVG 195
Query: 177 TGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE---GQFDDIQES----AILE 229
            GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E      D +  S      L 
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 230 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQ 289
              C +  C     +D D    T  +      +E +KKI  E+    K    L  C   Q
Sbjct: 256 DQYCFECDCFRCQTQDKDADXLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAXC---Q 311
Query: 290 EVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRV 347
            ++S+    E+L         +N+ Q +  +      + L   +EAL Y   T   Y+  
Sbjct: 312 AIISSNS--ERLP-------DINIYQLKVLDCAXDACINLGLLEEALFYGTRTXEPYRIF 362
Query: 348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 391
           +P  HP+ G+Q    GKL+   G    A K++  A +I R+THG
Sbjct: 363 FPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNLRLAFDIXRVTHG 406

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 178/426 (41%), Gaps = 49/426 (11%)
Query: 7   SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
           + +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ 
Sbjct: 29  AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66  ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           EC  + +  K   +++  +               +  + S        ++  V H  + +
Sbjct: 89  ECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEE 143
Query: 126 EKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLY 180
           +K+L +     ++   +  WP    + S+  I+  F  + CN  T+ +   L+ +G G++
Sbjct: 144 QKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF 198
Query: 181 PVISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAE----GQFDDIQESAI-------L 228
           P + ++NH C PN  ++F  G    V+++ H     E    G+  + +E  +       L
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258
Query: 229 EGYRCKDDGCSGFLLRDSDDKGFTCQQC--GL-----VRSKEEIK---KIASEVNILSKK 278
              R +        L+       +C+ C  GL     + +KE+ K   ++  E+   SK 
Sbjct: 259 SEERRRQ-------LKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKD 311
Query: 279 TL----ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 334
           TL       S G + EVV   +   + Q+ ++   ++ +++      ++L  L+ ++EA 
Sbjct: 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEAS 371
Query: 335 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394
            Y +  +  Y ++Y   +  LG+     G   W  G  E     + +A  IL +THG + 
Sbjct: 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431
Query: 395 PFMKEL 400
           P  K+L
Sbjct: 432 PITKDL 437

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-72
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	9e-14
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	1e-13
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	2e-13
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	3e-12
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-04

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  264 bits (675), Expect = 1e-84
 Identities = 96/412 (23%), Positives = 193/412 (46%), Gaps = 22/412 (5%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW LH+LE
Sbjct: 30  GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +  L +      + ++RL  ++  ++K+  +     T ++    V    +H+  +D 
Sbjct: 90  CSSMVVLGENWNP--SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLILQWPEI-SINEIAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L     ++ E    + +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE------GQFDDIQE--SAILEGYR--CK 234
           ++NHSC PN ++ ++G LA VRAVQ +  G E            ++    + + Y   C+
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263

Query: 235 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 294
              C+    +D D      ++       E I+ +      + ++        +  E++  
Sbjct: 264 CRECT---TKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI 320

Query: 295 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 354
            ++ ++    ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380

Query: 355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 406
           +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  ++E 
Sbjct: 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  247 bits (632), Expect = 3e-78
 Identities = 105/419 (25%), Positives = 184/419 (43%), Gaps = 37/419 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
           C+ L      K +    S+RL+ ++  +           + ++       L ++++ + E
Sbjct: 88  CKCLKSC---KPRYPPDSVRLLGRVVFKLMDGAP-----SESEKLYSFYDLESNINKLTE 139

Query: 127 KQLLLYAQIANLVNLILQ------WPEISINEIAENFSKLACNAHTICNSELRPLGTGLY 180
            +     Q+       ++             ++ E F+K+ CN+ TICN+E++ +G GLY
Sbjct: 140 DRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLY 199

Query: 181 PVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSG 240
           P IS++NHSC PN  +VF G   ++RAV+ +  G E          +   Y    D    
Sbjct: 200 PSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEE----------LTICYL---DMLMT 246

Query: 241 FLLRDS---DDKGFTCQ--QCGLVRSKEEI----KKIASEVNILSKKTLALTSCGNHQEV 291
              R     D   F C   +C       ++    +++  EV    KK   L +    ++V
Sbjct: 247 SEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQV 306

Query: 292 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 351
           ++  + I     +     ++  ++  +  +   + L   +EAL Y   T+  Y+  +P  
Sbjct: 307 LAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366

Query: 352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 410
           HP+ G+Q    GKL+   G    A+K++  A +I+R+THG     +++LIL LEE  A 
Sbjct: 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score =  235 bits (599), Expect = 1e-72
 Identities = 90/430 (20%), Positives = 170/430 (39%), Gaps = 39/430 (9%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
            +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ E
Sbjct: 30  ADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDI-- 124
           C  + +  K   +++  + R+M ++               T      V+ L  H+     
Sbjct: 90  CAAIKKYGKVPNENIRLAARIMWRVEREG--------TGLTEGCLVSVDDLQNHVEHFGE 141

Query: 125 DEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVI 183
           +E++ L       L     Q  + S+  I+  F  + CN  T+ +   L+ +G G++P +
Sbjct: 142 EEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNL 201

Query: 184 SIINHSCLPNAVLVFEGRL-------------AVVRAVQHVPKGAE------GQFDDIQE 224
            ++NH C PN  ++F                   +RA+  + +G E            +E
Sbjct: 202 GLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEE 261

Query: 225 --SAILEGY--RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTL 280
               + + Y   C  + C     +   D  F   +     S+E +K++        +K  
Sbjct: 262 RRRQLKKQYYFDCSCEHCQ----KGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKID 317

Query: 281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT 340
              S G + EVV   +   + Q+ ++   ++ +++      ++L  L+ ++EA  Y +  
Sbjct: 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM 377

Query: 341 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 400
           +  Y ++Y   +  LG+     G   W  G  E     + +A  IL +THG + P  K+L
Sbjct: 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437

Query: 401 ILKLEEAQAE 410
                + + E
Sbjct: 438 EAMRMQTEME 447

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 64.6 bits (157), Expect = 9e-14
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           NS S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 8  PNSDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 53

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKS 80
            +    RC  C A +  K+CS CQ  WYC   CQ   W+ H   C + ++ D+ K   
Sbjct: 10 AVAPERPRCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAKSGP 67

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20 VPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
          +     S   C  C   +  + CS C    YCGS CQ  DW+ H   C   S
Sbjct: 8  INQQEDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 60.4 bits (146), Expect = 3e-12
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 21 PNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
               S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 11 YFQGDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 57

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 59.1 bits (143), Expect = 6e-12
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           C  C   + + +C+ C  V YC + CQ+ DWK H+  C 
Sbjct: 11 SCVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHICG 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 8e-09
 Identities = 64/466 (13%), Positives = 141/466 (30%), Gaps = 140/466 (30%)

Query: 36  SSNLKKCSACQVVWYCGSNCQKLD------WKL-HRLECQVLSRLDKEKRKSVTPSIRL- 87
           S  ++     ++ W    NC   +       KL ++++    SR D     S    +R+ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIH 228

Query: 88  MLKLYLRRKLQN----------DNV-IPST------------TTDNYSLVEALVA----H 120
            ++  LRR L++           NV                 TT    + + L A    H
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 121 MSDIDEKQLLLYAQIANLVNLILQWPEISINE---------------IAE---------- 155
           +S       L   +   + +L+L++ +    +               IAE          
Sbjct: 289 ISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 156 NFSKLACNAHT----ICNSELRPLGT-GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQH 210
           N+  + C+  T       + L P     ++  +S+      P +  +    L+++     
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLI----- 395

Query: 211 VPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIAS 270
                +    D+             +    + L +   K  T            I  I  
Sbjct: 396 ---WFDVIKSDVMVVV---------NKLHKYSLVEKQPKESTI----------SIPSIYL 433

Query: 271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---------------LYHPFSVNLMQ 315
           E+ +  +   AL     H+ +V  Y + +                     +H  ++   +
Sbjct: 434 ELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 316 TREKLIKILMELEDWKEA-LAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTEN 374
                  + ++   + E  + +       +       + L  L++Y     + ++ D + 
Sbjct: 489 RMTLFRMVFLDF-RFLEQKIRH---DSTAWNASGSILNTLQQLKFY-----KPYICDNDP 539

Query: 375 AIKSMTEAVEILRITHGTN---SPFMKELILKL---EEAQAEASYK 414
             + +  A+         N   S +   L + L   +EA  E ++K
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 53/394 (13%), Positives = 116/394 (29%), Gaps = 121/394 (30%)

Query: 11  IISQEPY---VCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQK-LDWKLHRLE 66
           I+S+E     +   +  S   R      S   +      V  +     +    +      
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEVLRINYKF------ 93

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYS-------LVEALVA 119
             ++S +  E+R+   PS+   + +  R +L NDN        N S       L +AL  
Sbjct: 94  --LMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQAL-- 144

Query: 120 HMSDIDEKQLLLYAQI----ANLVNLILQ-------------W--------PEISINEIA 154
            +     K +L+   +      +   +               W        PE ++ E+ 
Sbjct: 145 -LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEML 202

Query: 155 ENF-SKLACNAHTICNSELR-PLGTG-LYPVIS-IINHSCLPNAVLVFEGRLAVVRAVQH 210
           +    ++  N  +  +      L    +   +  ++      N +LV             
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------------- 249

Query: 211 VPKGAEGQFDDIQESAILEGY--RCK------DDGCSGFLLR--------DSDDKGFTCQ 254
                     ++Q +     +   CK          + FL          D      T  
Sbjct: 250 --------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299

Query: 255 QCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMI-EKLQKKL-----Y-H 307
                   +E+K +  +      + L       +   +S   +I E ++  L     + H
Sbjct: 300 -------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKH 349

Query: 308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 341
                L    E  + +L E  ++++   + +L++
Sbjct: 350 VNCDKLTTIIESSLNVL-EPAEYRK--MFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 51/226 (22%)

Query: 218 QFDDIQESAILEGY-RCKDDGCSGFLLRDSD--DKGFTCQQCGLVRSKEEIKKIASEVNI 274
           + +  Q S +   Y   +D      L  D+    K    +    ++ ++ + ++    N+
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 275 L-------SKKTLALTSCGNHQ---------------EVVSTYKMIEKLQKKLYHPFSVN 312
           L        K  +AL  C +++                  S   ++E LQK L +    N
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPN 212

Query: 313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWF--- 368
                +    I + +   +  L           + Y   + LL L           F   
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYE--NCLLVLLNVQNAKAWNAFNLS 265

Query: 369 ---LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 411
              L  T    K +T+ +     TH      +    + L   + ++
Sbjct: 266 CKILLTTRF--KQVTDFLSAATTTH----ISLDHHSMTLTPDEVKS 305

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 2/134 (1%)

Query: 275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 334
            S     L   G     ++  +  E++ ++         + +  +  +IL      + A 
Sbjct: 56  TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA--LWSLIQQSEILFAQGFLQTAW 113

Query: 335 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 394
              +    +    + +  P+         +L W     + A  S    +E+L        
Sbjct: 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173

Query: 395 PFMKELILKLEEAQ 408
                ++++   A+
Sbjct: 174 LQCLAMLIQCSLAR 187

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 345
            +  + V  Y+    + +           +   K  ++L+  + + EA A  Q    +Y+
Sbjct: 129 LDLSKAVHLYQQAAAVFENEERLRQAA--ELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186

Query: 346 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 405
            +  + +P    +      ++    D   A K + E+  I   +   +   +++L+   +
Sbjct: 187 EM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244

Query: 406 EAQAEA 411
           E   E 
Sbjct: 245 EQDEEQ 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	100.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	100.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	100.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.46
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.4
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.33
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.15
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.1
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	98.98
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.94
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.92
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.87
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.82
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.76
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	98.75
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.73
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.72
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.67
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.65
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.6
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.57
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.56
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.56
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.56
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.55
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.5
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.5
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.48
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.48
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.48
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.47
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.4
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.4
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.39
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.37
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.32
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.32
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.32
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.31
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.25
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.23
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.22
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.22
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.18
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.15
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.11
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.02
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.0
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.0
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.99
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.99
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.98
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.96
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.88
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.87
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.84
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.84
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.79
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.75
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.72
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.68
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.66
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.64
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.62
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	97.6
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.58
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.54
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.49
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.47
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.47
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.38
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.29
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.26
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.25
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.1
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.1
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.06
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.9
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	96.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.74
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.66
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	96.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.45
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	96.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.15
3ray_A	237	PR domain-containing protein 11; structural genomi	95.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.96
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.73
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.38
2o8p_A	227	14-3-3 domain containing protein; signaling protei	94.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.74
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	94.59
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.98
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.9
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	93.87
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.64
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	93.56
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	93.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	92.36
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.28
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.02
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.75
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	91.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	91.47
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	91.29
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.6
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.47
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	90.16
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	90.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.9
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	88.81
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	88.61
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	88.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	88.29
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.01
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.8
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	87.17
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	85.91
2npm_A	260	14-3-3 domain containing protein; cell regulator p	85.91
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	85.89
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.3
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	84.87
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	84.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	84.74
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.68
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	82.93
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	82.11
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.63
2o8p_A	227	14-3-3 domain containing protein; signaling protei	81.02

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=100.00  E-value=2.2e-71  Score=556.63  Aligned_cols=400  Identities=22%  Similarity=0.374  Sum_probs=343.3

Q ss_pred             CCCCCCCeeEeeCCceeccCCCCCCccCccccCC-CCCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchhhhccCC
Q 014710            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (420)
Q Consensus         3 ~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~~~~~~~   81 (420)
                      ++|++||+|+.|+|+++++.......+|++|++. .++.+|++|++++|||++||+.+|++|+.||+.++.+..    .+
T Consensus        25 r~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~----~p  100 (490)
T 3n71_A           25 KEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGK----VP  100 (490)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHHTS----CC
T ss_pred             cCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhcCc----CC
Confidence            6899999999999999988877889999999997 458999999999999999999999999999999988742    45


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhHHHHhhccCCCCHHHHHH-HHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 014710           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLL-YAQIANLVNLILQ-WPEISINEIAENFSK  159 (420)
Q Consensus        82 ~~~~~l~~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~~~~~~~~-~~~~~~~~~~l~~-~~~~~~~~i~~~~~~  159 (420)
                      +..+|+++|+|++...++...    ....+..+..|++|.+++.+++... ...+..++..+.. ...++.++|.+++++
T Consensus       101 ~~~~rl~lRiL~~~~~~~~~~----~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (490)
T 3n71_A          101 NENIRLAARIMWRVEREGTGL----TEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGV  176 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSB----CTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHHHSCTTSCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccCccC----cchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHHHccccccCCCHHHHHHHHHH
Confidence            678899999998765443321    2345677899999999998766432 3334445543322 235789999999999


Q ss_pred             hhhcccccccCC-CcccccchhhhccccCCCCcCCceeEEeCC-------------EEEEEEecCCCCCCccCCCh----
Q 014710          160 LACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGR-------------LAVVRAVQHVPKGAEGQFDD----  221 (420)
Q Consensus       160 ~~~N~~~i~~~~-~~~~g~glyp~~s~~NHSC~PN~~~~f~~~-------------~~~vra~r~I~~Gee~~~~~----  221 (420)
                      +.+|+|+|.+.+ ...+|.||||.+|+|||||+||+.+.|+++             +++|+|+|||++|||||++|    
T Consensus       177 ~~~N~f~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~  256 (490)
T 3n71_A          177 INCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFL  256 (490)
T ss_dssp             HHTTEEEEECTTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSC
T ss_pred             HhccCcccccCCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCCC
Confidence            999999999876 468899999999999999999999999987             99999999999999987443    


Q ss_pred             ----HhHHHHhc--CccccCCCCCCCcccCCCCCccccCCCCCccCHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 014710          222 ----IQESAILE--GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTY  295 (420)
Q Consensus       222 ----~~~~~l~~--~~~C~c~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~  295 (420)
                          .|+..|.+  +|.|.|++|....... ....+   .++...+.+.+..+.+.++.+++++..+..+|++++|+.++
T Consensus       257 ~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~-~~~~~---~~~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~  332 (490)
T 3n71_A          257 HLSEERRRQLKKQYYFDCSCEHCQKGLKDD-LFLAA---KEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLC  332 (490)
T ss_dssp             SCHHHHHHHHHHHHSSCCCCHHHHHTTTHH-HHTCB---CSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCeEeeCCCCCCCCccc-chhhc---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                36677764  7999999998533110 00112   12334577889998898999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHH
Q 014710          296 KMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA  375 (420)
Q Consensus       296 ~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA  375 (420)
                      ++++.+++++||++|+.++.++++|+.+|..+|+|++|+.+++++|.+++++||++||.+|..+++||.+|..+|++++|
T Consensus       333 ~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA  412 (490)
T 3n71_A          333 RECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVG  412 (490)
T ss_dssp             HHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcc
Q 014710          376 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  414 (420)
Q Consensus       376 ~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~  414 (420)
                      +.+|++|++|++.++|++||.+.+++.+|.+++.++...
T Consensus       413 ~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          413 HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             HHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=100.00  E-value=3.6e-71  Score=546.85  Aligned_cols=393  Identities=23%  Similarity=0.472  Sum_probs=330.9

Q ss_pred             CCCCCCCeeEeeCCceeccCCCCCCccCccccCC-CCCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchhhhccCC
Q 014710            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (420)
Q Consensus         3 ~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~~~~~~~   81 (420)
                      ++|++||+|+.|+|+++++.......+|++|++. .++.+|++|+.++|||++||+.+|++|+.||+.++.+....  .+
T Consensus        25 r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~--~p  102 (433)
T 3qww_A           25 RPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENW--NP  102 (433)
T ss_dssp             SCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSSTTC--CC
T ss_pred             CCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhCccC--CC
Confidence            6899999999999999999877889999999997 56899999999999999999999999999999998875432  35


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhHHHHhhccCCCCHHHHHH-HHHHHHHHHHHhcC-CCCCHHHHHHHHHH
Q 014710           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLL-YAQIANLVNLILQW-PEISINEIAENFSK  159 (420)
Q Consensus        82 ~~~~~l~~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~~~~~~~~-~~~~~~~~~~l~~~-~~~~~~~i~~~~~~  159 (420)
                      +..+++++|+|++...+++.    ...+.+..+..|++|.+++..++... ...+..+...+... ..++.++|++++++
T Consensus       103 ~~~~rl~~Ril~~~~~~~~~----~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~  178 (433)
T 3qww_A          103 SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQ  178 (433)
T ss_dssp             CHHHHHHHHHHHHHHHCCSC----CGGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhcccc----CchhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            66789999999886554321    11235566788999999988764332 22333333333222 34588999999999


Q ss_pred             hhhcccccccCCCcccccchhhhccccCCCCcCCceeEEeCCEEEEEEecCCCCCCccC--CCh------HhHHHHhc--
Q 014710          160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDD------IQESAILE--  229 (420)
Q Consensus       160 ~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~~~~f~~~~~~vra~r~I~~Gee~~--~~~------~~~~~l~~--  229 (420)
                      +.+|+|+|.+.+...+|.||||.+|+|||||+||+.+.|+|++++|+|++||++|||++  |.+      .|+..|.+  
T Consensus       179 ~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~  258 (433)
T 3qww_A          179 VNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY  258 (433)
T ss_dssp             HHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHH
T ss_pred             HcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcC
Confidence            99999999988888899999999999999999999999999999999999999999986  433      36677764  


Q ss_pred             CccccCCCCCCCcccCCCCCccccCC--CCCccCHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcC
Q 014710          230 GYRCKDDGCSGFLLRDSDDKGFTCQQ--CGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH  307 (420)
Q Consensus       230 ~~~C~c~~C~~~~~~~~~~~~~~C~~--C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~  307 (420)
                      +|.|.|++|..+..     +...|..  |+.....++++.+.......+++..+....|++++|+.++++++++++++||
T Consensus       259 ~F~C~C~~C~~~~~-----d~~~~~~~~~~~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg  333 (433)
T 3qww_A          259 FFTCECRECTTKDK-----DKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE  333 (433)
T ss_dssp             SCCCCSHHHHHCTT-----HHHHTCBCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC
T ss_pred             CEEeECCCCCCCCc-----chhhhhhhhcCCCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC
Confidence            79999999985321     1222322  3334566777777766666666666666789999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ++|+.++.++++|+.+|..+|+|++|+.+++++|.+++++||++||.+|..+++||.+|..+|++++|+.+|++|++|++
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHH
Q 014710          388 ITHGTNSPFMKELILKLEE  406 (420)
Q Consensus       388 ~~~G~~h~~~~~~~~~l~~  406 (420)
                      .++|++||.+++++.+|++
T Consensus       414 ~~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          414 VAHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             HHTCTTCHHHHHHHHHHHC
T ss_pred             HHcCCCChHHHHHHHHHhc
Confidence            9999999999999988763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=100.00  E-value=6.7e-70  Score=538.85  Aligned_cols=388  Identities=26%  Similarity=0.435  Sum_probs=325.2

Q ss_pred             CCCCCCCeeEeeCCceeccCCCCCCccCccccCC-CCCcCCCCCCcccccChhhchhhhhhhHhhchhhhhchhhhccCC
Q 014710            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (420)
Q Consensus         3 ~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~~~~~~~~~~   81 (420)
                      ++|++||+|+.|+|+++++.......+|.+|++. .++.+|++|++++|||++||+.+|+.|+.||+.++.+.+   ..+
T Consensus        23 r~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~---~~~   99 (429)
T 3qwp_A           23 TPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKP---RYP   99 (429)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHTTT---CCC
T ss_pred             CCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhcCc---cCC
Confidence            6899999999999999999987889999999997 468999999999999999999999999999999988753   245


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCC------CCCHHHHHH
Q 014710           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP------EISINEIAE  155 (420)
Q Consensus        82 ~~~~~l~~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~h~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~i~~  155 (420)
                      ...+++++|++++.....    + +..+.|..+..|++|.++++.++...+..+...+..++...      ..+.+++++
T Consensus       100 ~~~~rl~~rill~~~~~~----~-~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (429)
T 3qwp_A          100 PDSVRLLGRVVFKLMDGA----P-SESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFE  174 (429)
T ss_dssp             CHHHHHHHHHHHHHHHSC----C-CGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHH
T ss_pred             ChHHHHHHHHHHHHhcCC----C-CchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHH
Confidence            577899999988754311    1 22345667889999999988765544444443344444321      234568999


Q ss_pred             HHHHhhhcccccccCCCcccccchhhhccccCCCCcCCceeEEeCCEEEEEEecCCCCCCccCCCh--------HhHHHH
Q 014710          156 NFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDD--------IQESAI  227 (420)
Q Consensus       156 ~~~~~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~~~~f~~~~~~vra~r~I~~Gee~~~~~--------~~~~~l  227 (420)
                      +++++.+|+|+|.+.+...+|.||||.+|+|||||.||+.+.|+|++++|+|+|||++||||+++|        .|+..|
T Consensus       175 ~~~~~~~N~f~i~~~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L  254 (429)
T 3qwp_A          175 AFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL  254 (429)
T ss_dssp             HHHHHHHHCEEEECTTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHH
T ss_pred             HHHHHHhcCccccccccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999988888899999999999999999999999999999999999999999986433        367777


Q ss_pred             hc--CccccCCCCCCCcccCCCCCccccCCCCCccCHHHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh
Q 014710          228 LE--GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL  305 (420)
Q Consensus       228 ~~--~~~C~c~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~  305 (420)
                      .+  +|.|.|++|..+....     ..-     ..+..    ....++.+......+..+|++++|++++++++.+++++
T Consensus       255 ~~~~~F~C~C~~C~~~~~~~-----~~~-----~~~~~----~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~  320 (429)
T 3qwp_A          255 RDQYCFECDCFRCQTQDKDA-----DML-----TGDEQ----VWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSER  320 (429)
T ss_dssp             HHHHCCCCCSHHHHHTTTHH-----HHT-----CSCHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC
T ss_pred             hccCCeEeeCCCCCCCcccc-----ccc-----ccchh----hhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc
Confidence            64  7999999998532110     000     00111    11223344455566677899999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          306 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       306 l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ||++|+.++.++++|+.+|..+|+|++|+.+++++|.+++++||++||.+|..+++||.+|..+|++++|+.+|++|++|
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          386 LRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       386 ~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      ++.++|++||.+.+++.+|++++.||.
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.46  E-value=5e-13  Score=133.66  Aligned_cols=112  Identities=13%  Similarity=-0.071  Sum_probs=105.6

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .++...|..+..+|++++|+.++++++.++++++|++||.++.++++||.+|..+|++++|..++++++.++++++|++|
T Consensus       352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H  431 (490)
T 3n71_A          352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH  431 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            44445666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      |.++..+..|+.++.+++.+++|+.+|++|.+
T Consensus       432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999854

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.40  E-value=6.1e-14  Score=99.25  Aligned_cols=59  Identities=32%  Similarity=0.619  Sum_probs=41.1

Q ss_pred             CCCCCCCeeEeeCCceeccCCCCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhh
Q 014710            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (420)
Q Consensus         3 ~~i~~Ge~il~e~p~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (420)
                      .+|++||+||.+.|         ....|..|++. .+.+|++|+.++|||++||..+|+.|+.+|..+.
T Consensus         2 ~~~~~G~~il~~~~---------~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~   60 (64)
T 2odd_A            2 NLYFQGENLYFQGD---------SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   60 (64)
T ss_dssp             -------------C---------CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred             CcCCCCCEEeeCCC---------CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence            47999999999998         25789999984 6889999999999999999999999999998653

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.35  E-value=7.8e-14  Score=125.10  Aligned_cols=79  Identities=24%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             hhcccccccCCCcccccchhhh-ccccCCCCcCCceeEEe-CCEEEEEEecCCCCCCccCCChHhHHHHhcCccccCCCC
Q 014710          161 ACNAHTICNSELRPLGTGLYPV-ISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC  238 (420)
Q Consensus       161 ~~N~~~i~~~~~~~~g~glyp~-~s~~NHSC~PN~~~~f~-~~~~~vra~r~I~~Gee~~~~~~~~~~l~~~~~C~c~~C  238 (420)
                      ..|.|.|..+. .....++|+. ++++||||.||+.+.+. ++++.|+|+|||++||||+++|...-.-..+|.|.|.+|
T Consensus       155 ~~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~~~~f~C~C~~C  233 (247)
T 3rq4_A          155 GENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTC  233 (247)
T ss_dssp             TTSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSSGGGTTCCCHHH
T ss_pred             cCCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcCCCCCEEECCCC
Confidence            46888776442 3457889887 88999999999988865 679999999999999999866542211113689999999


Q ss_pred             CC
Q 014710          239 SG  240 (420)
Q Consensus       239 ~~  240 (420)
                      ..
T Consensus       234 ~~  235 (247)
T 3rq4_A          234 ER  235 (247)
T ss_dssp             HH
T ss_pred             CC
Confidence            63

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.33  E-value=6.6e-11  Score=108.01  Aligned_cols=139  Identities=17%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|+..+++++...++.+++.++....++..++.++...|++++|+.++++++..++..+++++
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            33445566677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      |..+..+..+|.++..+|++++|+.++++|+++.+...|+++|....+...++.+....
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999888888888775443

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.26  E-value=5e-13  Score=121.03  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             HhhhcccccccCCCcccccchhhhccccCCCCcCCceeEEeCC-EEEEEEecCCCCCCccCCChHhHHHHhcCccccCCC
Q 014710          159 KLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDG  237 (420)
Q Consensus       159 ~~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~~~~f~~~-~~~vra~r~I~~Gee~~~~~~~~~~l~~~~~C~c~~  237 (420)
                      ....|.|.|........+......++++||||.||+.+.++|. ++.++|+|||++||||+++|.....-..+|.|.|.+
T Consensus       182 ~~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~~~~f~C~C~~  261 (273)
T 3s8p_A          182 RHGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYT  261 (273)
T ss_dssp             CTTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTSGGGTTCCCHH
T ss_pred             hhcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcCCCCeEEECCC
Confidence            3456777775433222233333457899999999999998765 899999999999999986654221111368899988


Q ss_pred             CC
Q 014710          238 CS  239 (420)
Q Consensus       238 C~  239 (420)
                      |.
T Consensus       262 c~  263 (273)
T 3s8p_A          262 CE  263 (273)
T ss_dssp             HH
T ss_pred             Cc
Confidence            75

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=1.2e-10  Score=106.21  Aligned_cols=128  Identities=14%  Similarity=0.041  Sum_probs=120.1

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      ....|++++|+..+++++....+.+++.++....++..++.++...|++++|+.++++++...+..+|+++|..+..+..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          362 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       362 La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      +|.++...|++++|+.++++|+++.+...|+++|....+...++.+..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888888887754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.19  E-value=5.1e-11  Score=117.26  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=80.7

Q ss_pred             HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      ..|+|++|+.+++++|.+.++++|++||.++..+.+||.+|..+|++++|+.++++|++|.+..+|++||.+...+.+|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 014710          406 EAQA  409 (420)
Q Consensus       406 ~~~~  409 (420)
                      .+..
T Consensus       390 ~~~~  393 (433)
T 3qww_A          390 RLYM  393 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8844

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=1.2e-09  Score=101.28  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=125.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|+..+++++...++.+++.++....++..++.++...|++++|+.++++++...+..+|+.+|..
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (311)
T 3nf1_A           73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV  152 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            34455567789999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      +..+..+|.++...|++++|+.++++++++.+...|+++|....+...++.+....
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  208 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ  208 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999888888887775443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=1.4e-09  Score=100.79  Aligned_cols=135  Identities=15%  Similarity=0.091  Sum_probs=124.0

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      +...+..+...|++++|+..+++++.+..+..++.++....++..++.++...|++++|+.++++++...+..+|.++|.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            34445556778999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      .+..+..+|.++...|++++|+.++++++++.+..+|+++|....+...++.+..
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888877644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.15  E-value=2.1e-10  Score=112.96  Aligned_cols=97  Identities=10%  Similarity=-0.027  Sum_probs=89.2

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      ++...+..+..+|+|++|+.++++++.++++++|++||.++.++++|+.+|..+|++++|+.++++++.+++..+|++||
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp  410 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS  410 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            34445566677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHhhc
Q 014710          354 LLGLQYYTCGKLEWFLG  370 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g  370 (420)
                      .++..+.+|+.+..+++
T Consensus       411 ~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          411 LIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999876543

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.10  E-value=2e-11  Score=98.08  Aligned_cols=47  Identities=19%  Similarity=0.125  Sum_probs=42.1

Q ss_pred             cccchhhhccccCCCCcCCceeEEe--CCEEEEEEecCCCCCCccCCCh
Q 014710          175 LGTGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       175 ~g~glyp~~s~~NHSC~PN~~~~f~--~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+..+++.++++||||.|||...++  +.++.++|+|||++|||++++|
T Consensus        57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y  105 (119)
T 1n3j_A           57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY  105 (119)
T ss_dssp             EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCC
T ss_pred             ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEec
Confidence            4677889999999999999999997  4589999999999999998765

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=98.98  E-value=2.6e-10  Score=98.88  Aligned_cols=61  Identities=28%  Similarity=0.461  Sum_probs=44.1

Q ss_pred             hccccCCCCcCCceeEE---eC-CEEEEEEecCCCCCCccCCChHhHH-HHhcCccccC--CCCCCCc
Q 014710          182 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDIQES-AILEGYRCKD--DGCSGFL  242 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f---~~-~~~~vra~r~I~~Gee~~~~~~~~~-~l~~~~~C~c--~~C~~~~  242 (420)
                      .+.++||||.||+...+   +| .++.++|+|+|++||||+++|.... .....|.|.|  +.|.|.+
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~~~~~~C~Cgs~~Crg~l  191 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL  191 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-------CCBCCCCCTTCCSBC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcCCCCceeECCCCCCcCcC
Confidence            46789999999999763   33 3789999999999999987654211 1224788988  5787764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.94  E-value=2.8e-08  Score=80.36  Aligned_cols=101  Identities=12%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      .+.+..++.+|++++|++.|++++.+     .|.+   ..++.+++.+|..+|++++|++.+++++.+... .+..++.+
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~   82 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHH
Confidence            34456678899999999999999875     3444   557889999999999999999999999988654 45678899


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +..++++|.++..+|++++|+.+|++|+.+
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.92  E-value=3e-08  Score=79.49  Aligned_cols=121  Identities=11%  Similarity=0.020  Sum_probs=101.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..+......|++++|++.+++++..     .|.++....++..++.++...|++++|+.++++++..     .+.++..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~   75 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKA   75 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCccc
Confidence            44566677789999999999998764     4788888888999999999999999999999998765     3667777


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      ...++.+|.++..+|++++|+.++++++...     |+++........+..+...+
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhhh
Confidence            8899999999999999999999999998753     78888888888887775543

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.88  E-value=8.3e-10  Score=76.61  Aligned_cols=45  Identities=38%  Similarity=0.761  Sum_probs=40.8

Q ss_pred             CCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhh
Q 014710           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (420)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (420)
                      ....|..|++. .+.+|.+|+.++|||++||..+|+.|+.||..+.
T Consensus        14 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~   58 (60)
T 2dj8_A           14 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS   58 (60)
T ss_dssp             CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred             CCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence            46899999984 6889999999999999999999999999998764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=6.3e-08  Score=78.19  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=87.1

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..++.+|++++|++.|++++.+     .|.+   ..++.+++.++..+|++++|+..+++++.+        .|
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p   78 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL--------DS   78 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hh
Confidence            3345567778899999999999999875     3444   467788999999999999999999999876        45


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      .....++.+|.++..+|++++|+..|++|+++     -|+++....
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~~  119 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEARE  119 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHHH
Confidence            55678999999999999999999999999986     566765544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.87  E-value=5.2e-08  Score=81.90  Aligned_cols=108  Identities=12%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhc---CCC-------ChhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPF-------SVNLMQTREKLIKILMELEDWKEALAYCQL  339 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l---~~~-------h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  339 (420)
                      +.+..+...+..++..|++++|+..|++++.......   .|.       ++....++.+++.++...|+|++|+.++.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456666778888889999999999999998754332   222       455677899999999999999999999999


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          340 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       340 ~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+        .|.-...++.+|.++..+|++++|+..|++|+.+
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            9887        4566779999999999999999999999999987

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.82  E-value=1.2e-09  Score=73.55  Aligned_cols=46  Identities=30%  Similarity=0.746  Sum_probs=37.4

Q ss_pred             CCCCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchh
Q 014710           23 NSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQV   69 (420)
Q Consensus        23 ~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~   69 (420)
                      +......|..|++. .+.+|++|+.++|||++||..+|+.|+.+|..
T Consensus         5 ~~~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~   50 (52)
T 2jw6_A            5 AERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ   50 (52)
T ss_dssp             ------CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTTC
T ss_pred             ccccCCcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHcc
Confidence            34457899999986 68999999999999999999999999999973

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.82  E-value=1.1e-09  Score=98.12  Aligned_cols=61  Identities=28%  Similarity=0.349  Sum_probs=44.1

Q ss_pred             hccccCCCCcCCceeEE--eC--CEEEEEEecCCCCCCccCCChHhHHHHhcCccccC--CCCCCCc
Q 014710          182 VISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKD--DGCSGFL  242 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f--~~--~~~~vra~r~I~~Gee~~~~~~~~~~l~~~~~C~c--~~C~~~~  242 (420)
                      .+.++||||.||+.+.+  .+  .++.|+|+|+|++|||||++|.....-...|.|.|  +.|.|++
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~C~CGs~~CrG~l  231 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFL  231 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTCTTCBCCCCCTTCCSBC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCCCCcEeECCCCcCcCcC
Confidence            45688999999998864  33  46889999999999999977642111112588877  4677654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.80  E-value=2.2e-07  Score=74.34  Aligned_cols=121  Identities=15%  Similarity=0.125  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .+.+...+..+...|++++|+..|++++..     .|.+   ..++.+++.++...|++++|+..+++++.+        
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK--------   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            344556677778899999999999999875     3444   467888999999999999999999999876        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~  410 (420)
                      .|.....++.+|.++..+|++++|+..+++++++-....  +.|....+...+..+...
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence            355567899999999999999999999999999874432  334455566666666544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.77  E-value=1.3e-07  Score=79.15  Aligned_cols=112  Identities=9%  Similarity=0.076  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ...+...+..+...|++++|+..|++++.+     .|.+   ..++.+++.++...|++++|+..+++++.+-     ++
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~  102 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-----KN  102 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----CC
Confidence            344556667778899999999999999875     3555   4467889999999999999999999998763     33


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      +   ...++++|.++..+|++++|+..|++|+++     .++++........|
T Consensus       103 ~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l-----~~~~~~~~~A~~ll  147 (151)
T 3gyz_A          103 D---YTPVFHTGQCQLRLKAPLKAKECFELVIQH-----SNDEKLKIKAQSYL  147 (151)
T ss_dssp             C---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
T ss_pred             C---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence            4   457899999999999999999999999986     35666444333333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.76  E-value=1.8e-07  Score=78.29  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=102.7

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC--CCh--hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP--FSV--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  346 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~--~h~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  346 (420)
                      +...+...+...+..|++++|+..|.+++.+....-..  .+.  ....++.+++.++..+|+|++|+..+.++|.++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            44555667777888899999999999999875431000  021  23448899999999999999999999999998766


Q ss_pred             hcCCCChHHHHHH----HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          347 VYPQFHPLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       347 ~~g~~hp~~~~~l----~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .. +-.|..+..+    ++.|.++..+|+++||+..|++|+++--.--| --+....+..++++-+
T Consensus        90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~-~~~~~~~~~~~~~~~~  153 (159)
T 2hr2_A           90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRI  153 (159)
T ss_dssp             HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHH
T ss_pred             cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHH
Confidence            64 6677888888    99999999999999999999999999655332 2234444444444433

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=98.75  E-value=3.1e-09  Score=94.73  Aligned_cols=63  Identities=27%  Similarity=0.368  Sum_probs=45.1

Q ss_pred             hccccCCCCcCCceeEE--eCC--EEEEEEecCCCCCCccCCChHhHH-HHhcCccccCC--CCCCCccc
Q 014710          182 VISIINHSCLPNAVLVF--EGR--LAVVRAVQHVPKGAEGQFDDIQES-AILEGYRCKDD--GCSGFLLR  244 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f--~~~--~~~vra~r~I~~Gee~~~~~~~~~-~l~~~~~C~c~--~C~~~~~~  244 (420)
                      .+.++||||.||+.+.+  .++  ++.|+|+|+|++||||+++|.... .....|.|.|.  .|.|.+..
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~~C~CGs~~Crg~i~~  215 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGG  215 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCCSCCCBCCCCCTTCCSBCC-
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCCcCCCEeeCCCcCCCCccCC
Confidence            35578999999998775  333  789999999999999997764211 11235777764  68887754

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.74  E-value=8.1e-09  Score=73.64  Aligned_cols=45  Identities=38%  Similarity=0.890  Sum_probs=41.0

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhhh
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSR   72 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~   72 (420)
                      ...|..|.+. .+..|.+|+.++|||++||..+|+.|+.+|..+..
T Consensus        15 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~   59 (70)
T 2d8q_A           15 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ   59 (70)
T ss_dssp             CCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred             CCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence            6799999985 68899999999999999999999999999997754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.73  E-value=4.8e-07  Score=74.46  Aligned_cols=130  Identities=15%  Similarity=0.082  Sum_probs=104.3

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++......  +.......++..++.++...|++++|+.++++++...+..  .+.+
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~   86 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRA   86 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcH
Confidence            33445555667899999999999998886553  3445567888999999999999999999999999988765  5567


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ..+..+..+|.++...|++++|+.++++|+++....-  +++........++.+..
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999987652  34455556666665543

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.72  E-value=4.4e-09  Score=72.87  Aligned_cols=45  Identities=36%  Similarity=0.741  Sum_probs=40.4

Q ss_pred             CCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhhh
Q 014710           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (420)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (420)
                      ....|..|++. .+..|.+|+.++|||++||..+|+.|+.+|..+.
T Consensus        12 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~   56 (60)
T 2od1_A           12 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   56 (60)
T ss_dssp             CSSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSS
T ss_pred             CCCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHcccc
Confidence            46899999984 6889999999999999999999999999998653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.72  E-value=4e-07  Score=74.70  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=93.4

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ..+...+..+...|++++|+..+++++..     .|.++   .++..++.++...|++++|+.++++++.+.     +.+
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~   85 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALMD-----INE   85 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCC
Confidence            34455666677889999999999999764     45554   556789999999999999999999998752     344


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhc
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                      |   ..++.+|.++..+|++++|+..|++++++.     |++|....+..........+..
T Consensus        86 ~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           86 P---RFPFHAAECHLQLGDLDGAESGFYSARALA-----AAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             T---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCGGGHHHHHHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHHh
Confidence            4   467899999999999999999999999875     4667666666666555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.70  E-value=5.4e-07  Score=74.80  Aligned_cols=120  Identities=11%  Similarity=0.084  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .......+..+..+|++++|+..+++++..     .|.++   .++..++.++...|++++|+..+++++.+.     +.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----p~   87 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----IX   87 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CC
Confidence            445556677778899999999999999764     35554   456789999999999999999999998762     33


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      +   ...++.+|.++..+|++++|+..|++|+++.     |++|....+..........+.
T Consensus        88 ~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A           88 E---PRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHHHHHC-
T ss_pred             C---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHHHHHHH
Confidence            4   4578999999999999999999999998765     456666555555555444433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.68  E-value=3.5e-07  Score=88.09  Aligned_cols=127  Identities=9%  Similarity=0.029  Sum_probs=108.0

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+......|++++|+..+++++.+....  ++++....++..++.+|...|++++|+.++++++.+++.. +...+..+.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~  185 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHH
Confidence            5666778899999999999998876553  5566688999999999999999999999999999998776 556889999


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      .+..||.++..+|++++|+.++++|+++....  .+++....+...++.+..
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876  455666666666666643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.67  E-value=1e-06  Score=73.95  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ...+...+..+...|++++|+..|++++.+.     |.+   ..++..++.+|...|++++|+.++++++.+        
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------   74 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PAN---PIYLSNRAAAYSASGQHEKAAEDAELATVV--------   74 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            3444556667778899999999999998752     444   567888999999999999999999999877        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +|.....++.+|.++..+|++++|+.+|++++++-
T Consensus        75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            35557789999999999999999999999999865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.65  E-value=8.5e-07  Score=85.36  Aligned_cols=130  Identities=12%  Similarity=0.183  Sum_probs=107.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+......|++++|+..+++++.+..+. +..++....++..++.+|...|++++|++++++++.+.+..  ++++
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  221 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQ  221 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChH
Confidence            33445556677899999999999999987654 33467788999999999999999999999999999998877  6788


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      ..+..+++||.++..+|++++|+.++++|+++.+..-.  .|....+...++.+.
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887632  144455556665553

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=98.63  E-value=9.4e-09  Score=87.55  Aligned_cols=40  Identities=25%  Similarity=0.227  Sum_probs=32.7

Q ss_pred             hccccCCCCcCCceeEE--eCC--EEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCLPNAVLVF--EGR--LAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f--~~~--~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++||||.|||....  .++  ++.+.|+|||++|||||++|
T Consensus       107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  150 (166)
T 3f9x_A          107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY  150 (166)
T ss_dssp             SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECC
T ss_pred             hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEc
Confidence            35678999999987763  343  68899999999999998665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.61  E-value=1.8e-06  Score=74.45  Aligned_cols=130  Identities=8%  Similarity=0.039  Sum_probs=102.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+......|++++|+..+++++...+..  ...+....++.+++.++...|++++|+.++++++.+.+ -.|...
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~  103 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDP  103 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccH
Confidence            334445556677899999999999999877653  34566788999999999999999999999999999987 445455


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      +..+..+..+|.++..+|++++|+.++++|+++.... | +......++..++.+
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~la~~  156 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-D-DQVAIACAFRGLGDL  156 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-c-chHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999987653 2 222233344444444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.61  E-value=2.1e-06  Score=74.43  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCCh----------hHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV----------NLMQTREKLIKILMELEDWKEALAYCQL  339 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~----------~~~~~~~~L~~~~~~~g~~~~A~~~~~~  339 (420)
                      .....+...+..+..+|++++|+..|++++.....  .+...          ....++.+++.++...|++++|+.++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34555666777888899999999999999875422  11111          1247788999999999999999999999


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          340 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       340 ~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      ++..        +|.....++.+|.++..+|++++|+.++++|+.+     .|+++.+...+
T Consensus       114 al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l  162 (198)
T 2fbn_A          114 VLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSY  162 (198)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred             HHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHH
Confidence            9876        3555678999999999999999999999999976     45665554433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.60  E-value=3.5e-06  Score=66.65  Aligned_cols=103  Identities=13%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..... .+..++
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~   76 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHH
Confidence            3445566667789999999999999775     2333   466788999999999999999999999987653 356677


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .....++.+|.++...|++++|..++++++.+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            77999999999999999999999999999984

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.60  E-value=1.7e-06  Score=80.19  Aligned_cols=129  Identities=10%  Similarity=0.033  Sum_probs=103.3

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|+..+++++.....  .+.....+.++.+++.+|...|++++|+.++++++..++.. +.+++..+..
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~  198 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKV  198 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHH
Confidence            33345678999999999999875322  22334467789999999999999999999999999988664 5688999999


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      ++++|.++..+|++++|+.++++|+++....  .+++....+...++.+...+.
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998765  245555666666666655443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.59  E-value=2.9e-06  Score=68.30  Aligned_cols=113  Identities=12%  Similarity=0.081  Sum_probs=88.1

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p   74 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   74 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------Cc
Confidence            3445566677889999999999999875     3444   467888999999999999999999999875        24


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  402 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~  402 (420)
                      .....++.+|.++..+|++++|+..+++|+.+-......-.+.+...+.
T Consensus        75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B           75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence            4566899999999999999999999999999876632222344443333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-06  Score=71.46  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+......|++++|++.+++++..     .|.+.....++..++.++...|++++|+.++++++..        +|.
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~   97 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGG   97 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------Ccc
Confidence            344556667789999999999998653     4666666888999999999999999999999998875        233


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  403 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~  403 (420)
                      ....++.+|.++..+|++++|+.++++++.+     .|+++.+...+..
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  141 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRN  141 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHH
Confidence            4678899999999999999999999999875     4666655544433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.57  E-value=1.4e-06  Score=71.62  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|++.+++++......  +..+....++..++.++...|++++|++++++++...+..  .+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~  126 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI  126 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence            34445666778899999999999998876553  3445567888999999999999999999999999988765  3568


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ..+..+..+|.++...|++++|..++++|+++.+.
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999998764

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.56  E-value=2.1e-08  Score=92.85  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=45.5

Q ss_pred             hccccCCCCcCCceeEE---eC--CEEEEEEecCCCCCCccCCChHhH----------HHH---hcCccccC--CCCCCC
Q 014710          182 VISIINHSCLPNAVLVF---EG--RLAVVRAVQHVPKGAEGQFDDIQE----------SAI---LEGYRCKD--DGCSGF  241 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f---~~--~~~~vra~r~I~~Gee~~~~~~~~----------~~l---~~~~~C~c--~~C~~~  241 (420)
                      .+.++||||.||+.+..   ++  .++.|+|+|+|++||||+++|...          +.+   ...+.|.|  +.|.|.
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~  284 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAF  284 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSB
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCcc
Confidence            45689999999998763   33  489999999999999999776421          011   12477887  578887


Q ss_pred             cc
Q 014710          242 LL  243 (420)
Q Consensus       242 ~~  243 (420)
                      +.
T Consensus       285 l~  286 (290)
T 3bo5_A          285 LP  286 (290)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.56  E-value=1.9e-08  Score=93.94  Aligned_cols=61  Identities=36%  Similarity=0.604  Sum_probs=33.9

Q ss_pred             hccccCCCCcCCceeEEe-C-------CEEEEEEecCCCCCCccCCChHhH-----------HHHhcCccccC--CCCCC
Q 014710          182 VISIINHSCLPNAVLVFE-G-------RLAVVRAVQHVPKGAEGQFDDIQE-----------SAILEGYRCKD--DGCSG  240 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f~-~-------~~~~vra~r~I~~Gee~~~~~~~~-----------~~l~~~~~C~c--~~C~~  240 (420)
                      .+.++||||.||+.+... +       .++.++|+|+|++||||+++|...           ..+...+.|.|  +.|.|
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Crg  299 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRG  299 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC------------------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCcc
Confidence            356899999999987542 2       279999999999999999776311           01223477877  46765


Q ss_pred             Cc
Q 014710          241 FL  242 (420)
Q Consensus       241 ~~  242 (420)
                      .+
T Consensus       300 ~l  301 (302)
T 1ml9_A          300 YL  301 (302)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.56  E-value=2e-06  Score=79.72  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=93.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhH-HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      ....+..+...|++++|+..+++++...+..  +.+... ..++.+++.+|...|++++|+.++++++.+...  ...+.
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~  233 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMA  233 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHH
Confidence            3444556677899999999999999876542  333433 388999999999999999999999999998754  46677


Q ss_pred             HHHHHHHHhhHHHHhhcChHHH-HHHHHHHHHHHHHh
Q 014710          354 LLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRIT  389 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA-~~~l~~A~~i~~~~  389 (420)
                      .++..++++|.++..+|++++| ..++++|+.+.+..
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999 88999999998875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=1.2e-06  Score=81.33  Aligned_cols=112  Identities=18%  Similarity=0.137  Sum_probs=96.2

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..+++++...+.. +..++....++.+++.+|...|++++|+.++++++.+....  ..++.
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~  234 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMAL  234 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHH
Confidence            3344555677899999999999999876543 34667788899999999999999999999999999988765  56778


Q ss_pred             HHHHHHHhhHHHHhhcC-hHHHHHHHHHHHHHHHHh
Q 014710          355 LGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRIT  389 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~-~~eA~~~l~~A~~i~~~~  389 (420)
                      .+..++.+|.++..+|+ +++|+.++++|+.+.+..
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            89999999999999995 699999999999999964

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.56  E-value=1.1e-06  Score=79.69  Aligned_cols=114  Identities=13%  Similarity=0.149  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ..++..+..++..|++++|+..+++++.     ..|.++....++..++.++...|++++|+.++++++...     +.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~   85 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QID   85 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCC
Confidence            4456667777889999999999999865     358888889999999999999999999999999987764     667


Q ss_pred             hHHHHHHHHhhHHHHh--------hcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          353 PLLGLQYYTCGKLEWF--------LGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       353 p~~~~~l~~La~~~~~--------~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      |.....++.+|.++..        .|++++|+..++++++.     .|+++.....+
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~  137 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDAT  137 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHH
Confidence            8888999999999999        99999999999999875     36777776665

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.55  E-value=6.8e-08  Score=89.14  Aligned_cols=57  Identities=25%  Similarity=0.354  Sum_probs=41.0

Q ss_pred             ccccCCCCcCCceeE--Ee-C-----CEEEEEEecCCCCCCccCCChHhH--HHHhcCccccC--CCCC
Q 014710          183 ISIINHSCLPNAVLV--FE-G-----RLAVVRAVQHVPKGAEGQFDDIQE--SAILEGYRCKD--DGCS  239 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~--f~-~-----~~~~vra~r~I~~Gee~~~~~~~~--~~l~~~~~C~c--~~C~  239 (420)
                      +.++||||.||+...  |. +     .++.+.|+|+|++||||+++|-..  +.....|.|.|  +.|.
T Consensus       217 aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~~~~~~~C~CGs~~CR  285 (287)
T 3hna_A          217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR  285 (287)
T ss_dssp             GGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHHHTTTCCCCCCCTTCS
T ss_pred             hheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcccccCCCcCEeeCCCCCCC
Confidence            457799999999753  32 1     289999999999999999776432  22234688876  3454

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.53  E-value=4.8e-08  Score=90.68  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=34.0

Q ss_pred             hccccCCCCcCCceeE--E-eC-----CEEEEEEecCCCCCCccCCChH
Q 014710          182 VISIINHSCLPNAVLV--F-EG-----RLAVVRAVQHVPKGAEGQFDDI  222 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~--f-~~-----~~~~vra~r~I~~Gee~~~~~~  222 (420)
                      .+.++||||.||+.+.  + ++     .++.+.|+|+|++||||+++|.
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~  263 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ  263 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGG
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECC
Confidence            5678999999999875  2 21     4799999999999999997764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.53  E-value=2.8e-06  Score=81.64  Aligned_cols=130  Identities=10%  Similarity=0.089  Sum_probs=106.1

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++....+. +...+....++..++.++...|++++|++++++++.+.+..  ++.+
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~  219 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDR  219 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            33445556677899999999999999887543 22244678899999999999999999999999999998776  5566


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ..+..+.+||.++..+|++++|+.++++|+++.+..   .+|....++..++.+..
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHH
Confidence            889999999999999999999999999999998887   45555666666666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.51  E-value=2.4e-06  Score=82.34  Aligned_cols=124  Identities=13%  Similarity=0.153  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh--------cCCCChhHHHHHHHHHHHHHHhhcHHHHHHH
Q 014710          265 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAY  336 (420)
Q Consensus       265 ~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--------l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~  336 (420)
                      .....+....+...+..+..+|++++|+..|++++......        ....++....++.+++.+|...|+|++|+++
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34444556667778888899999999999999998854331        1114566778899999999999999999999


Q ss_pred             HHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          337 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       337 ~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      +++++.+        +|..+..++.+|.++..+|++++|+..|++|+++     .|+++.+...+
T Consensus       296 ~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l  347 (370)
T 1ihg_A          296 CLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAEL  347 (370)
T ss_dssp             HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            9999874        4566788999999999999999999999999986     45666554433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.50  E-value=2.7e-06  Score=78.76  Aligned_cols=128  Identities=10%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|+..+++++......  ........++..++.+|...|++++|+.++++++.+.+... .........
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-~~~~~~~~~  198 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKV  198 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-ccccchHHH
Confidence            344566789999999999987654332  23334678899999999999999999999999999887653 222223389


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      ++++|.++..+|++++|+.++++|+++...  ..++.....+...++.+...+
T Consensus       199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999854  445666667777776664433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.50  E-value=1.4e-06  Score=78.97  Aligned_cols=118  Identities=8%  Similarity=0.072  Sum_probs=98.7

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHH--------------HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--------------EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~--------------~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      .|++++|+..+++++..     .|.++....+.              ..++.+|...|++++|+..+++++...     +
T Consensus       110 ~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p  179 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----P  179 (261)
T ss_dssp             CHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred             chhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----C
Confidence            78899999999999775     47777666665              788999999999999999999987653     5


Q ss_pred             CChHHHHHHHHhhHHHHhh----------cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhccccc
Q 014710          351 FHPLLGLQYYTCGKLEWFL----------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS  417 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~----------g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~~~~~~  417 (420)
                      .++.....++.+|.++..+          |++++|+..++++++..     |+++.+......+.++..++...+..
T Consensus       180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            6777888999999999977          88999999999988754     89999999999999888777665543

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.50  E-value=2.6e-08  Score=92.54  Aligned_cols=40  Identities=28%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             hccccCCCCcCCceeE--EeC------CEEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~--f~~------~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++||||.||+.+.  +.+      .++.++|+|+|++||||+++|
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  260 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY  260 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECC
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEc
Confidence            4568999999999864  322      389999999999999998665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=4e-06  Score=64.95  Aligned_cols=107  Identities=23%  Similarity=0.233  Sum_probs=84.9

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   68 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K   68 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------C
Confidence            44455666777889999999999999765     3444   456778999999999999999999998875        2


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  400 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~  400 (420)
                      |.....++.+|.++...|++++|..++++++++     .|+++.....
T Consensus        69 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~  111 (118)
T 1elw_A           69 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEG  111 (118)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHHHH
Confidence            344568899999999999999999999999864     5666655433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.48  E-value=1.5e-06  Score=85.73  Aligned_cols=118  Identities=10%  Similarity=0.043  Sum_probs=99.3

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYH-PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~-~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .+.....+|++++|++.+++++++.+...+ ..++..+.++.+++.+|..+|++++|..++++++.+.+.+.++.++..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            344556789999999999999988655433 3477788899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHhh--cChHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 014710          357 LQYYTCGKLEWFL--GDTENAIKSMTEAVEILRITHGTNSPFMKEL  400 (420)
Q Consensus       357 ~~l~~La~~~~~~--g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~  400 (420)
                      ..+.++|.++...  +++++|+.+|++|+.+     .|++|.....
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~  177 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSG  177 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHH
Confidence            9999998877665  5799999999999876     5777765443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.48  E-value=3.3e-06  Score=81.10  Aligned_cols=110  Identities=11%  Similarity=0.007  Sum_probs=94.5

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+......|++++|++.+++++.+.++.  +.......++.+|+.+|...|++++|+.++++++.+.+..   .+|.
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~  259 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDL  259 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGG
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChh
Confidence            3445556677899999999999999887554  3445678899999999999999999999999999998876   4566


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+..++.||.++..+|++++|+.++++|+++....
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999987654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.48  E-value=4.5e-06  Score=80.56  Aligned_cols=130  Identities=12%  Similarity=0.067  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      ....+...+..+...|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++...+..  
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--  119 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--  119 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--
Confidence            3455556677778899999999999999875     466655 45788999999999999999999999999998776  


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      .++|..+..++.+|.++...|++++|+.++++|+++....  .+++....+...++.+..
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999998875  245555555555555543

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.48  E-value=3.9e-08  Score=89.44  Aligned_cols=41  Identities=20%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             hccccCCCCcCCceeEE-eC---CE-EEEEEecCCCCCCccCCChH
Q 014710          182 VISIINHSCLPNAVLVF-EG---RL-AVVRAVQHVPKGAEGQFDDI  222 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f-~~---~~-~~vra~r~I~~Gee~~~~~~  222 (420)
                      .+.++||||.|||...+ .+   ++ +.++|+|||++||||+++|-
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg  231 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYG  231 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCC
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcC
Confidence            35688999999999987 22   34 48999999999999997653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=4.3e-06  Score=72.07  Aligned_cols=113  Identities=11%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+......|++++|+..+++++...+. .+........++.+++.++...|++++|+.++++++.+.+..  .+..
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  144 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQV  144 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchH
Confidence            3344555667789999999999999988653 333344778889999999999999999999999999987653  3456


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ..+..+..+|.++..+|++++|..++++|+++.+..
T Consensus       145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            678889999999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.47  E-value=1.9e-06  Score=71.48  Aligned_cols=109  Identities=11%  Similarity=-0.048  Sum_probs=88.0

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..|..+...|++++|++.+++++++     .|++   ..++..++.++...|++++|+.++++++.+        .|.-
T Consensus        35 ~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~   98 (150)
T 4ga2_A           35 FYFAKLYYEAKEYDLAKKYICTYINV-----QERD---PKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQ   98 (150)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCC
Confidence            34556677889999999999999875     3454   567888999999999999999999999876        3555


Q ss_pred             HHHHHHhhHHHHhhcChHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIK-SMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~-~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      ...+++||.++...|++++|.. ++++|+++     -|+||.+..++..|.
T Consensus        99 ~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           99 KDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHH
Confidence            6689999999999999987665 56889875     588988876665553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.46  E-value=5.6e-06  Score=76.73  Aligned_cols=123  Identities=11%  Similarity=-0.036  Sum_probs=96.3

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  359 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l  359 (420)
                      ..+...|++++|++.|++++.+..+.  .+......++.+++.+|...|++++|+.++++++.++...  ++....+..+
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~  120 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFK  120 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            34566899999999999999887553  2334567899999999999999999999999999988654  3455668899


Q ss_pred             HHhhHHHHhh-cChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          360 YTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       360 ~~La~~~~~~-g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .++|.++... |++++|+.+|++|+++.... | +++....++..++.+.
T Consensus       121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A          121 FELGEILENDLHDYAKAIDCYELAGEWYAQD-Q-SVALSNKCFIKCADLK  168 (292)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-C-ChHHHHHHHHHHHHHH
Confidence            9999999996 99999999999999998743 1 1122234455555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.44  E-value=1.1e-06  Score=69.46  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .|++++|+..+++++..     ++.++....++..++.++...|++++|+.++++++..        +|.-...++.+|.
T Consensus         3 ~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~   69 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAM   69 (117)
T ss_dssp             ----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHH
Confidence            46788899999888653     3446778899999999999999999999999999876        2444678899999


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      ++..+|++++|+.++++++..     .|++|.+....
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~  101 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAE-----TSDDETIQSYK  101 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHH
Confidence            999999999999999999875     35666554433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.43  E-value=2.1e-06  Score=89.93  Aligned_cols=93  Identities=20%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|+..|++++++        ++....++.+|+.++..+|++++|++++++++.+        +|..+
T Consensus        48 nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~  111 (723)
T 4gyw_A           48 NLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFA  111 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3344444555555555555555543        1222345555666666666666666666665544        34445


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+++||.++..+|++++|+..|++|+++
T Consensus       112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A          112 DAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55666666666666666666666666553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.41  E-value=9.8e-06  Score=71.02  Aligned_cols=107  Identities=12%  Similarity=0.170  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH----------------HHHHHHHhhcHHHHHH
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK----------------LIKILMELEDWKEALA  335 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~----------------L~~~~~~~g~~~~A~~  335 (420)
                      ++.++..+......|++++|+..+++++...        |.-..++..                ++.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            3455667777788999999999999998752        222333444                9999999999999999


Q ss_pred             HHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          336 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       336 ~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      .+++++..        +|.-...++.+|.++...|++++|+..|++|+++     .|+++....
T Consensus        76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~  126 (208)
T 3urz_A           76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANI  126 (208)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence            99999876        3555678999999999999999999999999985     567765543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.41  E-value=1.5e-05  Score=66.03  Aligned_cols=106  Identities=13%  Similarity=0.111  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      ........+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..       
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   76 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            4455566777778899999999999999875     2333   567788999999999999999999998876       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                       +|.....++.+|.++..+|++++|+.++++++.+     .|+++..
T Consensus        77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~  117 (166)
T 1a17_A           77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDA  117 (166)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHH
T ss_pred             -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHH
Confidence             2445678999999999999999999999999875     4555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.41  E-value=1.1e-05  Score=74.72  Aligned_cols=126  Identities=16%  Similarity=0.129  Sum_probs=102.2

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .+...+......|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++...+..  .++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            3445566677889999999999999875     455555 46788999999999999999999999999998877  577


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      |..+..+..+|.++...|++++|+.++++|+++....  .+++....+...++.+.
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~  133 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVY  133 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999998875  23344444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.40  E-value=1.9e-06  Score=68.82  Aligned_cols=94  Identities=12%  Similarity=-0.042  Sum_probs=77.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+..+++++.+        .|.-
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~   84 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKD   84 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            34455566789999999999999875     3444   567788999999999999999999998876        2444


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...++.||.++...|++++|+..+++++++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            558899999999999999999999999864

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.40  E-value=1.4e-07  Score=78.21  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=35.0

Q ss_pred             ccccCCCCcC---CceeEEeCCEEEEEEecCCCCCCccCCCh
Q 014710          183 ISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       183 ~s~~NHSC~P---N~~~~f~~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      +-++||||.|   |+...-.++++.++|+|+|++|||++|+|
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY  141 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY  141 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEcc
Confidence            5688999999   99986668899999999999999999765

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.40  E-value=6.3e-08  Score=90.27  Aligned_cols=39  Identities=21%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             ccccCCCCcCCceeEE-eC---CE-EEEEEecCCCCCCccCCCh
Q 014710          183 ISIINHSCLPNAVLVF-EG---RL-AVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~f-~~---~~-~~vra~r~I~~Gee~~~~~  221 (420)
                      +.++||||.|||...+ ..   ++ +.|+|+|||++|||||+++
T Consensus       241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Y  284 (293)
T 1h3i_A          241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY  284 (293)
T ss_dssp             GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEE
T ss_pred             eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEec
Confidence            5578999999999987 22   34 4899999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.39  E-value=5.9e-06  Score=65.68  Aligned_cols=94  Identities=16%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|..
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~   83 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTF   83 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCc
Confidence            34455566789999999999998753     3333   567788999999999999999999998875        2445


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...++.+|.++..+|++++|+.++++++.+
T Consensus        84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           84 IKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            668899999999999999999999999876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.39  E-value=1.4e-05  Score=62.90  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .......+......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++.+++..        
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   75 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI--------   75 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------
Confidence            344455566677789999999999999765     2333   557788999999999999999999998875        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .|.....++.+|.++...|++++|+.++++++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            2334668899999999999999999999999876

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.39  E-value=2.1e-07  Score=92.82  Aligned_cols=89  Identities=12%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHhhhcccccccCCCcccccchhhhccccCCCCcCCce-eEEeCCEEEEEEecCCCCCCccC--CChHh
Q 014710          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAV-LVFEGRLAVVRAVQHVPKGAEGQ--FDDIQ  223 (420)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~~-~~f~~~~~~vra~r~I~~Gee~~--~~~~~  223 (420)
                      .++.+.+...++.+.+++|.+...++...+.+|+|.+.|+||||.||.. +.++++.+.++|.++|++|||++  |.+..
T Consensus       237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~  316 (497)
T 3smt_A          237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRS  316 (497)
T ss_dssp             CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCC
T ss_pred             ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCC
Confidence            4678888889999999999997766656678999999999999999643 33457889999999999999975  66554


Q ss_pred             HHHHh--cCccccC
Q 014710          224 ESAIL--EGYRCKD  235 (420)
Q Consensus       224 ~~~l~--~~~~C~c  235 (420)
                      ...|+  +||.+..
T Consensus       317 n~~Ll~~YGFv~~~  330 (497)
T 3smt_A          317 NAEFVIHSGFFFDN  330 (497)
T ss_dssp             HHHHHHHHSCCCTT
T ss_pred             hHHHHHHCCCCCCC
Confidence            44443  4888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.38  E-value=4.9e-06  Score=73.86  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .+...+..+...|++++|+..+++++..     .|.++....++..++.++...|+|++|+..+++++...     +.++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~   75 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence            3455666677789999999999999764     57788888899999999999999999999999987643     5677


Q ss_pred             HHHHHHHHhhHHHHh------------------hcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWF------------------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       354 ~~~~~l~~La~~~~~------------------~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      .....++.+|.++..                  .|++++|+..++++++.     -|+++...+.+..+..+
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~  142 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFL  142 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHH
Confidence            777888999988875                  46888888888887654     36777766655544444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.37  E-value=2e-06  Score=84.83  Aligned_cols=96  Identities=8%  Similarity=-0.104  Sum_probs=83.2

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      +.....+++.|+.++...|++++|++++++++++.+...+ ..+|..+..+.++|.+|..+|++++|+.++++|+.+...
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            4445677889999999999999999999999999998887 569999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHH
Q 014710          389 THGTNSPFMKELILKLE  405 (420)
Q Consensus       389 ~~G~~h~~~~~~~~~l~  405 (420)
                      ..++.++...++...+.
T Consensus       127 ~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEG  143 (472)
T ss_dssp             SCCSSCCCCHHHHHHHH
T ss_pred             cccccchhhHHHHHHHH
Confidence            98888876666554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.37  E-value=8.8e-06  Score=78.48  Aligned_cols=130  Identities=11%  Similarity=0.051  Sum_probs=105.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++......  ..+.....++..++.++...|++++|+.++++++.+....  .+++
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  300 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GERE  300 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            33445566677899999999999998887652  3555677788999999999999999999999999998776  5667


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ..+..+..+|.++...|++++|+.++++|+.+....  .+++....+...++.+..
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~  354 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHS  354 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999998876  244455556666665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.37  E-value=1.2e-05  Score=76.98  Aligned_cols=133  Identities=20%  Similarity=0.153  Sum_probs=108.5

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++......  +.+.....++..++.++...|++++|+.++++++.+....  .+++
T Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~  304 (406)
T 3sf4_A          229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRI  304 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcH
Confidence            33445566677899999999999998876553  4566678899999999999999999999999999988775  4578


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      ..+..+..+|.++...|++++|+.++++|+++.... | +.+....+...++++...+-
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV-G-DKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-c-CCcchhHHHHHHHHHHHHhh
Confidence            889999999999999999999999999999998775 2 34556667777777755443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.36  E-value=1.3e-05  Score=76.45  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=94.4

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|+..+++++......  ........++..++.++...|++++|+.++++++...+..-+..+|..+
T Consensus        58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           58 VLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            33444566799999999999998876552  2334456778899999999999999999999999999988778889999


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ..+..+|.++...|++++|+.++++++++...
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999998765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.35  E-value=1.3e-05  Score=76.64  Aligned_cols=124  Identities=16%  Similarity=0.145  Sum_probs=101.6

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      +...+..+...|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++.+.+..  .+.|
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~   84 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQL   84 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccH
Confidence            344566677789999999999999875     455555 56789999999999999999999999999998776  5778


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ..+..+..+|.++...|++++|+.++++|+++....-  +++....+...++.+
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~  136 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNV  136 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHH
Confidence            9999999999999999999999999999999988762  334444444444444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.33  E-value=4.1e-06  Score=87.68  Aligned_cols=97  Identities=22%  Similarity=0.275  Sum_probs=83.6

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +.+...+..+..+|++++|++.|++++++     .|++   ..++.+|+.+|...|++++|++++++++.+        .
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~   73 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEV-----FPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRI--------S   73 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            44455566677899999999999999875     2444   567889999999999999999999999876        4


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      |..+..+++||.++..+|++++|+..|++|+++
T Consensus        74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l  106 (723)
T 4gyw_A           74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI  106 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            667789999999999999999999999999976

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.32  E-value=1.6e-05  Score=75.37  Aligned_cols=114  Identities=12%  Similarity=0.127  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcC-------CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~-------~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      ........+..+...|++++|+..|++++.+......       ..++....++.+++.++...|++++|+.++++++.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445556677778889999999999999876422100       011334678899999999999999999999999886


Q ss_pred             HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                              .|.-...++.+|.++..+|++++|+..|++|+++     .|+++..
T Consensus       226 --------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a  266 (336)
T 1p5q_A          226 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAA  266 (336)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHH
T ss_pred             --------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHH
Confidence                    3555678999999999999999999999999986     4555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.32  E-value=7.3e-06  Score=76.52  Aligned_cols=121  Identities=16%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+...|++++|+..+++++.+..+.  ........++.+++.+|...|++++|+.++++++.++...  .+....+..+.
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~  120 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALD  120 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            3556788888988888888876543  2334567788888899999999999999999998887542  34456778888


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      ++|.++.. |++++|+.+|++|+++.... | +......++..++.+.
T Consensus       121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~  165 (307)
T 2ifu_A          121 RAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLL  165 (307)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHH
Confidence            99999888 99999999999999888763 2 1223344555555553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.32  E-value=1.1e-05  Score=75.17  Aligned_cols=108  Identities=10%  Similarity=0.015  Sum_probs=87.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|+..+++++.+....  ........++.+++.+|.. |++++|+.++++++.++...  ...+..+
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~  155 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA  155 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence            34445566789999999999998876542  1223457888999999988 99999999999999988763  3345668


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ..+.++|.++..+|++++|+.++++|+.+....
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            899999999999999999999999999987664

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.31  E-value=7.7e-07  Score=87.80  Aligned_cols=86  Identities=20%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHhhhcccccccCC----CcccccchhhhccccCCCCcCCceeEEeCCEEEEEEecCCCCCCcc--CCCh
Q 014710          148 ISINEIAENFSKLACNAHTICNSE----LRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEG--QFDD  221 (420)
Q Consensus       148 ~~~~~i~~~~~~~~~N~~~i~~~~----~~~~g~glyp~~s~~NHSC~PN~~~~f~~~~~~vra~r~I~~Gee~--~~~~  221 (420)
                      ++.+.....++.+.+-+|.+...+    ....+.+|.|.+.|+||||.||+.+.|+++.+.++|.++|++|||+  +|.+
T Consensus       184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~  263 (449)
T 3qxy_A          184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQ  263 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSS
T ss_pred             CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCC
Confidence            566677777788888888764321    2357899999999999999999999999999999999999999996  5776


Q ss_pred             HhHHHHh--cCccc
Q 014710          222 IQESAIL--EGYRC  233 (420)
Q Consensus       222 ~~~~~l~--~~~~C  233 (420)
                      .....|+  +||..
T Consensus       264 ~~n~~ll~~YGF~~  277 (449)
T 3qxy_A          264 MANWQLIHMYGFVE  277 (449)
T ss_dssp             CCHHHHHHHHSCCC
T ss_pred             CCHHHHHHhCCCCC
Confidence            5455544  36755

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.31  E-value=3e-06  Score=84.54  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=86.8

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+..+|++++|++.++++++.     +|.   ...++.+++.++...|++++|++++++++.+        +|..
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~   73 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKY   73 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCC
Confidence            34455667789999999999999875     233   3678889999999999999999999999876        5666


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      +..++++|.++..+|++++|+.++++|+++     .|+++.....+
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~l  114 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKY  114 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            789999999999999999999999999986     46666554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.31  E-value=3e-05  Score=60.45  Aligned_cols=102  Identities=23%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|..
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~   76 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNN   76 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCcc
Confidence            34455566789999999999998765     2333   456778999999999999999999998764        2333


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      ...++.+|.++...|++++|..++++++.+     .|+++...
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~  114 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAK  114 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence            567889999999999999999999999875     35555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.28  E-value=7.9e-06  Score=77.58  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|...
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~  281 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTV-----RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFI  281 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCch
Confidence            3344556679999999999999875     3444   457788999999999999999999999876        46667


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM----KELILKLEEA  407 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~----~~~~~~l~~~  407 (420)
                      ..++.+|.++..+|++++|+.++++|+++.....|++++..    ..+...|..+
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~  336 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA  336 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence            89999999999999999999999999999998888776544    3344444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.25  E-value=2.1e-05  Score=72.67  Aligned_cols=128  Identities=13%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|++.+++++......  +.++....++..++.++...|++++|+.++++++......  .+.+.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~  121 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVG  121 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchH
Confidence            3345556677899999999999998876654  4566778899999999999999999999999999988775  45678


Q ss_pred             HHHHHHHhhHHHHhhcC--------------------hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGD--------------------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~--------------------~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      .+..+..+|.++...|+                    +++|+.++++++.+....  .+.+....+...++.+.
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~  193 (338)
T 3ro2_A          122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTH  193 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHH
Confidence            89999999999999999                    999999999999988775  24455555555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.23  E-value=1e-05  Score=64.94  Aligned_cols=89  Identities=12%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcC
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  391 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G  391 (420)
                      ....++.+|+..+...|+|++|++++.+++.+        +|.-+..++++|.++..+|++++|+..+++|+.+-.. ..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cc
Confidence            34556788999999999999999999999876        4566778999999999999999999999999998655 45


Q ss_pred             CCCchHHHHHHHHHHHHH
Q 014710          392 TNSPFMKELILKLEEAQA  409 (420)
Q Consensus       392 ~~h~~~~~~~~~l~~~~~  409 (420)
                      .+++....++..+..+..
T Consensus        77 ~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            566666666666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.22  E-value=3.1e-05  Score=71.31  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=82.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .+...+..+...|++++|+..|++++..     .|.+   ..++.+++.++...|++++|+.++++++.+        +|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p   69 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   69 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence            3445666777889999999999999875     3444   466788999999999999999999998865        45


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .....++.+|.++..+|++++|+.+|++|+++--
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            5567899999999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.22  E-value=7.1e-06  Score=68.01  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=75.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ..+|++++|+..++++.        +.++.-......++.+|...|+|++|++++++++.+        +|.-...++.|
T Consensus         8 ~~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l   71 (150)
T 4ga2_A            8 RSKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFL   71 (150)
T ss_dssp             CCHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             HHcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            34566777777776663        334555556678999999999999999999999877        45567789999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      |.++...|++++|+..|++|+++     .|+++.+
T Consensus        72 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  101 (150)
T 4ga2_A           72 GLLYELEENTDKAVECYRRSVEL-----NPTQKDL  101 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHh-----CCCCHHH
Confidence            99999999999999999999976     5566543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.22  E-value=3.1e-05  Score=76.64  Aligned_cols=116  Identities=15%  Similarity=0.233  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcC-------CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  342 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~-------~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  342 (420)
                      .........+..++.+|++++|+..|++++.+....-.       ..++....++.+++.+|..+|+|++|+.++.+++.
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34455566777888899999999999999876422100       01234467889999999999999999999999988


Q ss_pred             HHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       343 ~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      +        .|.....++++|.++..+|++++|+..|++|+++     .|+++...
T Consensus       346 ~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-----~P~~~~a~  388 (457)
T 1kt0_A          346 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAAR  388 (457)
T ss_dssp             H--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C----CHH
T ss_pred             c--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence            6        3455778999999999999999999999999875     44555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.20  E-value=7.3e-05  Score=71.17  Aligned_cols=124  Identities=14%  Similarity=0.067  Sum_probs=99.7

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCCh-hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .+......|++++|+..+++++...    .+.++ ....+...++.++...|++++|..++++++.+....  ++....+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~   93 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYAL   93 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence            3444566899999999999987643    33333 356678899999999999999999999999988763  3345667


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      ..+..+|.++...|++++|+.++++++++.....++++|....+...++.+
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            889999999999999999999999999999988777777766666666555

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.18  E-value=2.5e-05  Score=72.31  Aligned_cols=109  Identities=16%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .....+..+...|++++|+..+++++.+....  ........++.+++.+|... |++++|+.++++++.+....  ...
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~  154 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSV  154 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CCh
Confidence            33445555677899999999999999886542  22333567889999999996 99999999999999987643  223


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +..+..+.++|.++..+|++++|+.++++|+++.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4456789999999999999999999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.17  E-value=2.1e-05  Score=66.86  Aligned_cols=91  Identities=18%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......++++.++..++++...     .|.+   ..+...++.++...|++++|++++++++.+        +|.....
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~-----~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~  143 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIAL-----NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRA  143 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhH
Confidence            33445567788888887777653     3444   356678899999999999999999998876        4566778


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+|.++..+|++++|+.++++|+++
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            999999999999999999999999875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.15  E-value=4.9e-05  Score=71.11  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=92.7

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      +......+..+...|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++..       
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------  301 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------  301 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            334445566778889999999999999765     355544 4467788999999999999999999999876       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                       +|.....++.+|.++...|++++|+.++++|+++     .|+++.....+..+...
T Consensus       302 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          302 -EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKAQRL  352 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence             3545678999999999999999999999999975     57777665554444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.15  E-value=4e-05  Score=72.46  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|...
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~  285 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYI  285 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcH
Confidence            3455566789999999999999775     3444   457788999999999999999999999876        35556


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT---NSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~---~h~~~~~~~~~l~~~~~~~  411 (420)
                      ..++.+|.++..+|++++|+.++++|+.+.....|+   .++....+...++.+...+
T Consensus       286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  343 (368)
T 1fch_A          286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML  343 (368)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence            789999999999999999999999999988766443   3455566666676665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.13  E-value=2.9e-05  Score=68.46  Aligned_cols=97  Identities=16%  Similarity=0.093  Sum_probs=77.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-----------hcHHHHHHHHHHhHH
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP  342 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~  342 (420)
                      .....+......|++++|+..+++++++     .|.+   ..++..++.++...           |++++|+..+++++.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVAR-----TPRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            3444556667789999999999999875     3444   45677889999999           999999999999987


Q ss_pred             HHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       343 ~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      .        .|.-...++.+|.++..+|++++|+..+++|+++-
T Consensus       113 ~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          113 V--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             h--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            6        35555677888899888999999999888888764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.11  E-value=7.2e-05  Score=66.50  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|.
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~  205 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPN  205 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHH
Confidence            344555667789999999999999875     2444   467788999999999999999999999875        244


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  406 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~  406 (420)
                      ....++.+|.++..+|++++|..++++|+++.....  +.|...++...|++
T Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            567899999999999999999999999999875542  34444555555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.11  E-value=5.4e-05  Score=63.92  Aligned_cols=117  Identities=7%  Similarity=0.010  Sum_probs=91.5

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHH-HHHhhcH--HHHHHHHHHhHHHHHHhcC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDW--KEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~-~~~~g~~--~~A~~~~~~~l~~~~~~~g  349 (420)
                      ......+..+...|++++|+..+++++...     |.+   ..++..++.+ +...|++  ++|+.++++++..      
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------  110 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL------  110 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------
Confidence            344455666777899999999999998753     444   3466778888 7889998  9999999998875      


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~  410 (420)
                        .|.-...++.+|.++...|++++|+.++++++++     .|+++....+...+.+++.-
T Consensus       111 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~i~~~~~~  164 (177)
T 2e2e_A          111 --DSNEITALMLLASDAFMQANYAQAIELWQKVMDL-----NSPRINRTQLVESINMAKLL  164 (177)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTSCHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHHHh
Confidence              2444567899999999999999999999999865     55667777777777766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.10  E-value=4.3e-05  Score=67.40  Aligned_cols=113  Identities=19%  Similarity=0.112  Sum_probs=86.9

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh----HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN----LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~----~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      .....+..+...|++++|+..+++++..     .|.++.    +..++..++.++...|++++|++++++++..      
T Consensus        78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------  146 (228)
T 4i17_A           78 AYIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV------  146 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc------
Confidence            3444566667789999999999999875     355553    4467889999999999999999999998875      


Q ss_pred             CCChH--HHHHHHHhhHHHHhhcCh---------------------------HHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 014710          350 QFHPL--LGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKEL  400 (420)
Q Consensus       350 ~~hp~--~~~~l~~La~~~~~~g~~---------------------------~eA~~~l~~A~~i~~~~~G~~h~~~~~~  400 (420)
                        +|.  ....++.||.++...|+.                           ++|+.++++|+++     .|+++.+..+
T Consensus       147 --~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~  219 (228)
T 4i17_A          147 --TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQM  219 (228)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             --CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHH
Confidence              577  788899999999888887                           6777777777764     5777766655


Q ss_pred             HHHH
Q 014710          401 ILKL  404 (420)
Q Consensus       401 ~~~l  404 (420)
                      +..+
T Consensus       220 l~~i  223 (228)
T 4i17_A          220 QDQV  223 (228)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.09  E-value=1.6e-05  Score=75.56  Aligned_cols=118  Identities=14%  Similarity=0.160  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh--------------HHHHHHHHHHHHHHhhcHHHHH
Q 014710          269 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--------------LMQTREKLIKILMELEDWKEAL  334 (420)
Q Consensus       269 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~--------------~~~~~~~L~~~~~~~g~~~~A~  334 (420)
                      .+........+..++..|++++|+..|++++....     .+..              ...++.+++.++...|+|++|+
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-----HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34455566778888899999999999999987532     2210              1137889999999999999999


Q ss_pred             HHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          335 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       335 ~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      .++++++.+        +|.-...++++|.++..+|++++|+..|++|+++     .|+++.....+..+
T Consensus       251 ~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-----~p~~~~a~~~L~~l  307 (338)
T 2if4_A          251 GHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-----APDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Confidence            999999875        3555678999999999999999999999999875     35555554444333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.09  E-value=1.6e-05  Score=60.94  Aligned_cols=93  Identities=17%  Similarity=0.098  Sum_probs=74.4

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|++++++++..    .| . ......
T Consensus        13 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~-~-~~~~~~   78 (112)
T 2kck_A           13 GVLQYDAGNYTESIDLFEKAIQL-----DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV----IE-D-EYNKDV   78 (112)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----SC-C-TTCHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----Cc-c-cchHHH
Confidence            44556789999999999999765     2443   456778999999999999999999998765    22 2 114568


Q ss_pred             HHHhhHHHHhh-cChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFL-GDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~-g~~~eA~~~l~~A~~i  385 (420)
                      ++.+|.++..+ |++++|+.++++++..
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            89999999999 9999999999998653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.08  E-value=3.1e-05  Score=68.27  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|..
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~   72 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKE-----NPQD---PEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRY   72 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc
Confidence            44555667789999999999998753     3444   566788999999999999999999999876        3555


Q ss_pred             HHHHHHhhHHHHhh-----------cChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          356 GLQYYTCGKLEWFL-----------GDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       356 ~~~l~~La~~~~~~-----------g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      ...++.+|.++..+           |++++|+..+++|+++     .|+++..
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~  120 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL  120 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence            67889999999999           9999999999999986     4555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.06  E-value=0.0001  Score=65.23  Aligned_cols=123  Identities=9%  Similarity=-0.010  Sum_probs=91.2

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH------------------hhcHHHHHH
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME------------------LEDWKEALA  335 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~------------------~g~~~~A~~  335 (420)
                      .....+..+...|++++|+..++++++.     .|.++....++..++.++..                  .|++++|+.
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            3445566677889999999999999864     57887776777777777765                  578999999


Q ss_pred             HHHHhHHHHHHhcCCCChHHH--------------HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          336 YCQLTIPVYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       336 ~~~~~l~~~~~~~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      .+++++..+     |+++...              ...+.+|.++...|++++|+..++++++..     |++|...+.+
T Consensus       118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~  187 (225)
T 2yhc_A          118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL  187 (225)
T ss_dssp             HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred             HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence            988876543     3444332              223678899999999999999999998764     5667666777


Q ss_pred             HHHHHHHHHH
Q 014710          402 LKLEEAQAEA  411 (420)
Q Consensus       402 ~~l~~~~~~~  411 (420)
                      ..++.+...+
T Consensus       188 ~~l~~~~~~~  197 (225)
T 2yhc_A          188 PLMENAYRQM  197 (225)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            7777664443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.05  E-value=1.9e-05  Score=74.63  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc---CC
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY---PQ  350 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~---g~  350 (420)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++.+.....   +.
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  324 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALEL-----QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  324 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence            3344555667789999999999999775     3333   46778899999999999999999999998876552   34


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      .++.....+..||.++..+|++++|...++++++++...+|.+
T Consensus       325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  367 (368)
T 1fch_A          325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP  367 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred             ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence            5677788999999999999999999999999999999998865

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6.6e-05  Score=66.75  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .+.+...+......|++++|+..+++++...      .+   ..++..++.++...|++++|+.++++++...... ++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~   74 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RAD   74 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccc
Confidence            4555666777788999999999999998763      22   4577889999999999999999999999876543 456


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++..+..++.+|.++...|++++|+.++++++.+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  108 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE  108 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            7777999999999999999999999999999985

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.04  E-value=3.9e-05  Score=63.93  Aligned_cols=100  Identities=13%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcH----------HHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW----------KEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .|++|++.+++++.+     .|.+   ..++.+++.++...+++          ++|+..++++|.+        .|...
T Consensus        17 ~feeA~~~~~~Ai~l-----~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP~~~   80 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS-----NPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------CcCcH
Confidence            356677777777654     3444   45666777777777654          5788887777776        47777


Q ss_pred             HHHHHhhHHHHhhc-----------ChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLG-----------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       357 ~~l~~La~~~~~~g-----------~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                      .++++||.+|..+|           ++++|+.+|++|+++     -|+++.+...+....++
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhC
Confidence            88999999998875           899999999999986     67788777665554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.02  E-value=0.00016  Score=62.76  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=65.4

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .+..+...|++++|++.+++++..     .|.+   ..++..++.++... |++++|+.++++++.      .+.+|...
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~  113 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSI-----KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPY  113 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchH
Confidence            344455667777777777777653     2333   34556777777788 888888887777765      24556667


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..++.+|.++...|++++|+.+++++++.
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77788888888888888888888887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.00  E-value=5.2e-05  Score=66.86  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .+...+..+...|++++|++.+++++....    +.+.   .++..++.++...|++++|+.++++++..        .|
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p   73 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------NY   73 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------Cc
Confidence            445566677788999999999999987531    1333   45566999999999999999999998843        56


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .....++.+|.++..+|++++|+..+++|+++
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.00  E-value=8.8e-05  Score=66.08  Aligned_cols=91  Identities=9%  Similarity=0.051  Sum_probs=54.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++.      .+.+|.....++
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~  145 (252)
T 2ho1_A           80 VFQTEMEPKLADEEYRKALAS-----DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFE  145 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHH
Confidence            334455666666666555443     1222   34455566666666666666666666554      234555666666


Q ss_pred             HhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          361 TCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       361 ~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+|.++...|++++|+.+++++++.
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            6777777777777777777766654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.00  E-value=0.00018  Score=56.48  Aligned_cols=91  Identities=24%  Similarity=0.350  Sum_probs=69.3

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|++++|+..+++++..     +|.+   ..++..++.++...|++++|+.++++++..        .|.....
T Consensus         8 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~   71 (136)
T 2fo7_A            8 GNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEA   71 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCchHH
Confidence            44455668889999988888654     2333   445667888888999999999998887654        1333456


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+|.++...|++++|+.++++++.+
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            788899999999999999999998875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.00  E-value=5e-05  Score=60.81  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      -+|.....+.+++..+...|+|++|++++++++.+        .|.-...++++|.++..+|++++|+..+++|+++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            47888899999999999999999999999999876        4555778999999999999999999999999975   


Q ss_pred             hcCCCCch
Q 014710          389 THGTNSPF  396 (420)
Q Consensus       389 ~~G~~h~~  396 (420)
                        .|+++.
T Consensus        77 --~p~~~~   82 (126)
T 4gco_A           77 --DSKFIK   82 (126)
T ss_dssp             --CTTCHH
T ss_pred             --hhhhhH
Confidence              555553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.99  E-value=4.6e-05  Score=66.18  Aligned_cols=104  Identities=10%  Similarity=-0.058  Sum_probs=82.2

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc------
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY------  348 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~------  348 (420)
                      ....+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++......-      
T Consensus        40 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           40 CFNIGCMYTILKNMTEAEKAFTRSINR-----DKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            344555667789999999999999775     2333   56778999999999999999999999876431100      


Q ss_pred             -C-CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          349 -P-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       349 -g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                       | ..+|.....++++|.++..+|++++|+.++++|+.+.
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence             0 1456778999999999999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.99  E-value=0.00013  Score=64.89  Aligned_cols=93  Identities=9%  Similarity=-0.057  Sum_probs=73.9

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+..+...|++++|++.+++++.      .+.++....++..++.++...|++++|+.++++++..        .|....
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~  176 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPS  176 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHH
Confidence            34445667888888888887754      3456666778888999999999999999999988765        233356


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .++.+|.++...|++++|+.+++++++
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            788999999999999999999999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.99  E-value=5.6e-05  Score=58.96  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh
Q 014710          290 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  369 (420)
Q Consensus       290 ~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~  369 (420)
                      +++..+++++.     ..|.+   ..++..++.++...|++++|+.++++++..        .|.....++.||.++..+
T Consensus         3 ~a~~~~~~al~-----~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLA-----QGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHT-----TTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            35566666654     23444   457788999999999999999999999875        344566889999999999


Q ss_pred             cChHHHHHHHHHHHHHHHHh
Q 014710          370 GDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       370 g~~~eA~~~l~~A~~i~~~~  389 (420)
                      |++++|+.+|++|+++....
T Consensus        67 g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccc
Confidence            99999999999999986553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.98  E-value=0.00019  Score=59.98  Aligned_cols=92  Identities=14%  Similarity=0.075  Sum_probs=70.1

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+......|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++..        +|....
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~  111 (186)
T 3as5_A           48 LGIAYVKTGAVDRGTELLERSLAD-----APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFN  111 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHH
Confidence            344455678888898888888764     2333   455677888888899999999988888765        233456


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+..+|.++...|++++|+.++++++..
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            7788899999999999999999988875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.97  E-value=7e-05  Score=67.48  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=82.2

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~  107 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------D  107 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            33445566677789999999999999875     3444   456788999999999999999999999876        2


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      |.....++.+|.++...|++++|+.++++++++     .|+++
T Consensus       108 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~  145 (275)
T 1xnf_A          108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP  145 (275)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh
Confidence            334578899999999999999999999999874     45555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.96  E-value=0.00017  Score=70.18  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      ....+......|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++..        +|
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p  326 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EP  326 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc
Confidence            344566677789999999999999764     455655 3578899999999999999999999998876        45


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      .....++.+|.++...|++++|+.++++|+++     .|+++.+...+..+.
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEKAQ  373 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHHHH
Confidence            55678999999999999999999999999873     567766655554433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.90  E-value=8.9e-05  Score=64.33  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=77.4

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      .+..+......|++++|+..+++++       .+ +   ..++..++.++...|++++|+.++++++..        +|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~   69 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-------DP-H---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   69 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-------SC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-------CC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Ccc
Confidence            4556667778899999998887662       22 2   458889999999999999999999999876        245


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ....++.+|.++..+|++++|+..+++|+++.
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.90  E-value=0.00018  Score=62.79  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH---
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---  354 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~---  354 (420)
                      .+..+...|++++|+..+++++.+     .|.+   ..++..++.++...|++++|+.++++++.+-     +.++.   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~  126 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK-----APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANI  126 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHH
Confidence            566677889999999999999875     3554   4677889999999999999999999988752     22211   


Q ss_pred             -HH----------------------------HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          355 -LG----------------------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       355 -~~----------------------------~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                       +|                            ..++.+|..+..+|++++|+.+|++|+++.     |+ +.....+..+.
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~-~~~~~~l~~i~  200 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-----PS-TEAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS-----CC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC-HHHHHHHHHHH
Confidence             11                            123344555555677888888888887653     33 24555666666


Q ss_pred             HHHHHH
Q 014710          406 EAQAEA  411 (420)
Q Consensus       406 ~~~~~~  411 (420)
                      +.+.++
T Consensus       201 ~~~~~~  206 (208)
T 3urz_A          201 RIEKEV  206 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.90  E-value=0.00015  Score=67.74  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ++.....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            345566677778899999999999999864     3444   457788999999999999999999999876        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .|.....++.+|.++...|++++|+.++++++.+
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  100 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  100 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            3444578999999999999999999999999865

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.89  E-value=0.00025  Score=61.44  Aligned_cols=94  Identities=10%  Similarity=0.014  Sum_probs=72.4

Q ss_pred             HHhhhhcC-CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          278 KTLALTSC-GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       278 ~a~~~~~~-g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .+..+... |++++|+..+++++.      .|.++....++..++.++...|++++|+.++++++..        .|...
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  147 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFP  147 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCc
Confidence            34445667 888888888888764      3456666778888889999999999999988888664        23335


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+..+|.++...|++++|..++++++.+
T Consensus       148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          148 PAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            67888899999999999999999888774

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.89  E-value=2.6e-05  Score=74.00  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=90.0

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..+++++..     +|.+   ..++..++.++...|++++|+.++++++.+.....++.++.
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  321 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEI-----QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVP  321 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccc
Confidence            344555667789999999999999875     3444   66788999999999999999999999999988877765554


Q ss_pred             H----HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710          355 L----GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  394 (420)
Q Consensus       355 ~----~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  394 (420)
                      .    +..+..|+.++..+|+.+.|.....++++++...+|.++
T Consensus       322 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~  365 (365)
T 4eqf_A          322 HPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP  365 (365)
T ss_dssp             -----CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC-
T ss_pred             hhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCCC
Confidence            4    778899999999999999999999999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.88  E-value=3.9e-05  Score=58.63  Aligned_cols=71  Identities=25%  Similarity=0.250  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      |.-..++..++.++...|++++|+.++++++..        .|.....++.||.++..+|++++|+..|++|+++....
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            334466788999999999999999999999876        24445589999999999999999999999999986653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.87  E-value=0.0002  Score=56.26  Aligned_cols=92  Identities=24%  Similarity=0.339  Sum_probs=73.3

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|....
T Consensus        41 ~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~  104 (136)
T 2fo7_A           41 LGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAE  104 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChH
Confidence            344455678999999999988764     2333   346678899999999999999999988764        233356


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .++.+|.++...|++++|..++.+++.+
T Consensus       105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            7888999999999999999999999865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.87  E-value=0.00015  Score=67.09  Aligned_cols=108  Identities=9%  Similarity=0.022  Sum_probs=86.2

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC-hHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLG  356 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-p~~~  356 (420)
                      .+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++.......+... |...
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSI-----APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            344556678999999999988654     3444   466788999999999999999999999998766655333 5667


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      ..+..+|.++...|++++|+.++++++++     .|+++.+.
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~  273 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVL-----IPQNASTY  273 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCSHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CccchHHH
Confidence            78999999999999999999999999976     45555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.86  E-value=8.5e-05  Score=66.93  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=51.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..|..+...|++++|+..+++++..     .|.++.   ++..++.++...|++++|++++++++.     .|.+....+
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~   74 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFS-----KVNATKAKS   74 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST---THHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTCCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhHHH
Confidence            3444455556666666666666542     233322   344455566666666666666665544     122223335


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ..++.+|.++...|++++|+.++++|++
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~  102 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVD  102 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            5556666666666666666666666655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.85  E-value=0.0002  Score=52.57  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  392 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~  392 (420)
                      ...++..++.++...|++++|+.++++++..        .|.....++.+|.++...|++++|+.++++|+++     .|
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CC
Confidence            4567788999999999999999999999875        2444568899999999999999999999999986     35


Q ss_pred             CCchHH
Q 014710          393 NSPFMK  398 (420)
Q Consensus       393 ~h~~~~  398 (420)
                      +++...
T Consensus        75 ~~~~~~   80 (91)
T 1na3_A           75 NNAEAK   80 (91)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            555433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.84  E-value=0.00015  Score=73.62  Aligned_cols=96  Identities=17%  Similarity=-0.003  Sum_probs=79.3

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++..        +|
T Consensus        25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p   88 (568)
T 2vsy_A           25 AWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDA--------AP   88 (568)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence            3444555666779999999999998763     3444   567788999999999999999999999876        34


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .-...++.+|.++..+|++++|+.+|++|+++
T Consensus        89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.84  E-value=0.00024  Score=70.55  Aligned_cols=94  Identities=12%  Similarity=0.018  Sum_probs=77.5

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh--------hcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      |++++|++.+++++.+     .|.+   ..++..++.+|...        |++++|++++++++.+.     +.++....
T Consensus       193 g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~  259 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQM-----DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPD  259 (474)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHH
T ss_pred             hhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHH
Confidence            7889999999999875     3444   45678899999999        99999999999998872     11227888


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      .++++|.++..+|++++|+..|++|+++     .|+++..
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a  294 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEP  294 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            9999999999999999999999999986     4566643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.83  E-value=0.00025  Score=59.94  Aligned_cols=118  Identities=16%  Similarity=0.167  Sum_probs=70.1

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH------------
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------------  345 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~------------  345 (420)
                      .+.....+|++++|++.|++++++     .|++   ..++..++.++...|++++|+..+.+++....            
T Consensus        11 lG~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A           11 IGDKKRTKGDFDGAIRAYKKVLKA-----DPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            344455667777777777777654     3444   34555666677777777776666655543210            


Q ss_pred             -HhcC-------------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          346 -RVYP-------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       346 -~~~g-------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                       ...+             ..+|.-...+..+|.++..+|++++|+..+++++++     .|+++   ++...++.+...+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~  154 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFI---RAYQSIGLAYEGK  154 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhh---hHHHHHHHHHHHC
Confidence             0000             013344456777788888888888888888888775     34443   4445555554433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.83  E-value=0.00014  Score=64.16  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+......|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|...
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  193 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVEL-----NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHA  193 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccH
Confidence            3445556678999999999988765     2333   346778899999999999999999988765        23445


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      ..++.+|.++...|++++|..++++++++     .|+++.....+..+.
T Consensus       194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          194 DAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHHH
Confidence            67899999999999999999999999874     567776665554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.83  E-value=0.00011  Score=67.95  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=87.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ...+..+...|++++|+..+++++......-.+.. +....++..++.++...|++++|+.++++++...        |.
T Consensus       197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~  268 (330)
T 3hym_B          197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQ  268 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------cc
Confidence            34455566789999999999999987655433333 3345678889999999999999999999998762        44


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      ....+..+|.++..+|++++|..++++|+++     .|+++....
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  308 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVT  308 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHH
Confidence            4568899999999999999999999998764     466665443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.80  E-value=0.00046  Score=63.55  Aligned_cols=98  Identities=15%  Similarity=0.064  Sum_probs=79.5

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|..
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~  239 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVEL-----RPDD---AQLWNKLGATLANGNRPQEALDAYNRALDI--------NPGY  239 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCC
Confidence            33455566789999999999998765     3444   456788999999999999999999998775        2444


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ...++.+|.++..+|++++|+.++++++.+....
T Consensus       240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            5678999999999999999999999999876553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.79  E-value=0.00044  Score=63.64  Aligned_cols=103  Identities=13%  Similarity=0.028  Sum_probs=80.6

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH----------
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------  343 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------  343 (420)
                      .....|......|++++|+..|++++..     .|.++   .++..++.++...|++++|+.++++++..          
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQNG---EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSCH---HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcch---hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            3455566677789999999999999875     35554   67888999999999999999998887541          


Q ss_pred             -----------------HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          344 -----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       344 -----------------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                                       +++.. ..+|.-...++.||.++...|++++|+..|+++++.
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al-~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQV-AENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                             11111 125566678999999999999999999999999885

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.79  E-value=0.00028  Score=58.90  Aligned_cols=94  Identities=17%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++...        |...
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~  144 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEA-----NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEG  144 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc-----CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------ccch
Confidence            3344556678999999999998765     3443   4567789999999999999999999987652        3335


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ..++.+|.++...|++++|..++++++.+.
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            788999999999999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.00015  Score=69.38  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|++++|++.+++++..     .|.++   .++..++.++...|++++|+.++++++..        +|.....
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  341 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRL-----CPTHA---DSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAA  341 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh-----CcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHH
Confidence            33344456666666666666543     23332   34455666666677777777666666542        3555566


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ++.+|.++...|++++|+.++++|++
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          342 HSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            77777777777777777777777765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.77  E-value=0.00043  Score=60.85  Aligned_cols=93  Identities=15%  Similarity=0.020  Sum_probs=71.9

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|++.+++++...     |.+   ..++..++.++...|++++|+.++++++..        .|...
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  159 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDT  159 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccH
Confidence            34455566788999999888887642     344   345677888899999999999999888765        23345


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..++.+|.++...|++++|+.+++++++.
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          160 EARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57888999999999999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.76  E-value=0.00025  Score=65.54  Aligned_cols=105  Identities=12%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710          284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  363 (420)
Q Consensus       284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  363 (420)
                      ..|++++|+..+++++..     .|.+   ..++..++.++...|++++|..++++++..-        |.-...++++|
T Consensus       178 ~~~~~~eA~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~~~~~l~~l~  241 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADK-----CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDKD--------SGHPETLINLV  241 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHH-----SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence            357889999999998764     3444   4577889999999999999999999998762        44455689999


Q ss_pred             HHHHhhcChHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          364 KLEWFLGDTEN-AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       364 ~~~~~~g~~~e-A~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      .++..+|+..+ +..+++++++     ..|+||.+.++..+-..-..
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~~d~~~~~~~fd~  283 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFIKEYRAKENDFDR  283 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHH
Confidence            99999999987 5688888764     57999999998777665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.76  E-value=0.00011  Score=66.10  Aligned_cols=91  Identities=10%  Similarity=-0.018  Sum_probs=75.9

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ..+|++++|++.+++++..    ....++....++..++.++...|++++|+.++++++..        +|.....++.+
T Consensus        16 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l   83 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYL   83 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence            3457788999988888653    12334667889999999999999999999999999876        34456688999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      |.++...|++++|+.++++|+++
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999999986

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.75  E-value=0.00014  Score=67.19  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=89.5

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC---
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF---  351 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~---  351 (420)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|++++++++.......+..   
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  280 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDI-----NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA  280 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc
Confidence            344555667789999999999998765     2333   44677899999999999999999999988753322222   


Q ss_pred             -ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          352 -HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       352 -hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                       +......+..+|.++..+|++++|..+++++++++...+|.++.
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  325 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSM  325 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSCC
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHHh
Confidence             22267889999999999999999999999999999999887663

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.74  E-value=0.00023  Score=70.70  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=79.6

Q ss_pred             HHHHHHhhhhcCCCh-HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          274 ILSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~-~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      .....+..+...|++ ++|++.+++++.+     .|.+   ..++..++.+|...|++++|++++++++...        
T Consensus       104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------  167 (474)
T 4abn_A          104 ALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--------  167 (474)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------
Confidence            344556666778999 9999999999875     2333   5678899999999999999999999998752        


Q ss_pred             hHHHHHHHHhhHHHHhh---------cChHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFL---------GDTENAIKSMTEAVEI  385 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~---------g~~~eA~~~l~~A~~i  385 (420)
                      |. ...+..||.++..+         |++++|+.++++|+++
T Consensus       168 p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          168 KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence            33 48899999999999         9999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.0011  Score=64.19  Aligned_cols=116  Identities=15%  Similarity=0.014  Sum_probs=97.7

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++.+|+..++.++......  ..++..+.++..++.+|...|+|++|..++++++.+...+. ..+...+
T Consensus       140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~  216 (434)
T 4b4t_Q          140 KLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHH
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHH
Confidence            33455667799999999999987765432  45677889999999999999999999999999999887664 4566788


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      ..+..+|.++...|++++|..++.+|+......-..++.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            999999999999999999999999999999887666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00029  Score=53.85  Aligned_cols=88  Identities=17%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCC
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  393 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~  393 (420)
                      ...+..++..+...|++++|++++++++..        .|.-...++++|.++..+|++++|+..+++|+++     .|+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence            456778999999999999999999999876        3444677899999999999999999999999875     344


Q ss_pred             Cc---hHHHHHHHHHHHHHHHhcc
Q 014710          394 SP---FMKELILKLEEAQAEASYK  414 (420)
Q Consensus       394 h~---~~~~~~~~l~~~~~~~~~~  414 (420)
                      ++   ....+...++.+...+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhH
Confidence            41   2245556666665555433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.68  E-value=0.00049  Score=69.57  Aligned_cols=110  Identities=13%  Similarity=0.036  Sum_probs=86.6

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChh-HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ...+..+...|++++|++.+++++....+.  +.++. ...++..++.++...|++++|++++++++...        |.
T Consensus       479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~  548 (597)
T 2xpi_A          479 NELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TN  548 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CC
Confidence            344555667899999999999998765431  23444 47888999999999999999999999988762        33


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  400 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~  400 (420)
                      -...+..||.++...|++++|+.++++++++     .|+++.....
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~  589 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAI-----SPNEIMASDL  589 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHH
Confidence            4578899999999999999999999999885     5666655443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.66  E-value=0.00024  Score=56.02  Aligned_cols=83  Identities=11%  Similarity=-0.055  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      +..++..+...|++++|+.++++++..     .+.++.....++.+|.++...|++++|+.+++++++.     .|+++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence            456788899999999999999988764     3577888889999999999999999999999999874     577766


Q ss_pred             HHHHHHHHHHHHH
Q 014710          397 MKELILKLEEAQA  409 (420)
Q Consensus       397 ~~~~~~~l~~~~~  409 (420)
                      ..+....++.+..
T Consensus        75 ~~~~~~~la~~~~   87 (129)
T 2xev_A           75 AAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            6666666666543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00035  Score=68.98  Aligned_cols=99  Identities=11%  Similarity=0.037  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      .++.+...+..+...|++++|+..|++++...     | +   ..++..++.++...|++++|+.++++++..       
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------   68 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----E-D---PVFYSNLSACYVSVGDLKKVVEMSTKALEL-------   68 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----c-c---HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------
Confidence            45666777888888999999999999998753     4 2   567888999999999999999999999875       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                       +|.....++.+|.++..+|++++|+..+++++.+-
T Consensus        69 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           69 -KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             -CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             -ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence             35556789999999999999999999999987653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0004  Score=67.26  Aligned_cols=76  Identities=16%  Similarity=0.046  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          311 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       311 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      +...++...|+.++...|+|.+|+.++++++....  -..+++..+..+..++.++..+|++++|..++++|+.+...
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK--KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            33444555555555555555555555555433321  12445555555555555555555555555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.65  E-value=0.0002  Score=59.37  Aligned_cols=77  Identities=9%  Similarity=-0.057  Sum_probs=66.5

Q ss_pred             CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          308 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       308 ~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .-+|.-..++..++.++...|++++|+.++++++..        .|.-...++.||.++..+|++++|+..|++|+.+  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            346777888999999999999999999999999876        4555668999999999999999999999999876  


Q ss_pred             HhcCCCCchH
Q 014710          388 ITHGTNSPFM  397 (420)
Q Consensus       388 ~~~G~~h~~~  397 (420)
                         .|++|..
T Consensus       100 ---~P~~~~~  106 (151)
T 3gyz_A          100 ---GKNDYTP  106 (151)
T ss_dssp             ---SSSCCHH
T ss_pred             ---CCCCcHH
Confidence               4667654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.64  E-value=0.00029  Score=67.94  Aligned_cols=62  Identities=6%  Similarity=-0.088  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.+++.++..+|++++|+..+++++.+        .|.-...++++|.++..+|++++|+.++++|+++
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3444444455555555555555554443        2333445555555655566666666666665553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.64  E-value=0.00013  Score=65.78  Aligned_cols=96  Identities=14%  Similarity=-0.004  Sum_probs=69.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|++.+++++..     +++......++..++.++...|++++|++++++++..        +|...
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~  108 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFSK-----VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRL  108 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT-----SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhc-----cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccH
Confidence            3444556678888888888877641     2333334667788888888888888888888888764        23344


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+..+|.++...|++++|+.++++|+++
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            57788888888888888888888887765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.64  E-value=0.00058  Score=65.14  Aligned_cols=87  Identities=18%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  361 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  361 (420)
                      +...|++++|++.+++++..     .|.++   .++..++.++...|++++|++++++++..        +|.-...+..
T Consensus       247 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  310 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIEL-----QPHFP---DAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNN  310 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT-----CSSCH---HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHH
Confidence            34445555555555555432     23332   23455566666666666666666655543        1223345556


Q ss_pred             hhHHHHhhcChHHHHHHHHHHHH
Q 014710          362 CGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       362 La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      +|.++...|++++|+.+++++++
T Consensus       311 l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          311 LANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666666666666666666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.63  E-value=4e-05  Score=58.87  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC-
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-  351 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-  351 (420)
                      ......+......|++++|++.+++++..     .|.+   ..++.+++.++...|++++|++++++++.+    .|.. 
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~   72 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY----TSTAE   72 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcc
Confidence            34455667778889999999999999875     3444   456789999999999999999999998764    2321 


Q ss_pred             -ChHHHHHHHHhhHHHHhhcChHHHHHHH
Q 014710          352 -HPLLGLQYYTCGKLEWFLGDTENAIKSM  379 (420)
Q Consensus       352 -hp~~~~~l~~La~~~~~~g~~~eA~~~l  379 (420)
                       ....+..++.+|.++..+|++++|+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence             1224778899999999988877765544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.62  E-value=0.00013  Score=61.79  Aligned_cols=102  Identities=12%  Similarity=0.057  Sum_probs=74.2

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHH-----------
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY-----------  344 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~-----------  344 (420)
                      +..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++...           
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~   81 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDE-----LQSR---GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK   81 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHH-----HHTS---HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence            44555666788999999888887654     2333   5667788889999999999988887664321           


Q ss_pred             ---HHhcCC------------CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          345 ---QRVYPQ------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       345 ---~~~~g~------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                         ....+.            .+|.-...++.+|.++...|++++|+..|++++++
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence               000111            14555678899999999999999999999998764

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=97.60  E-value=7.2e-05  Score=73.67  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHhhhcccccccCCCcccccchhhhccccCCCCcCCc---eeEEe--------CCEEEEEEecCCCCCCc
Q 014710          148 ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA---VLVFE--------GRLAVVRAVQHVPKGAE  216 (420)
Q Consensus       148 ~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~---~~~f~--------~~~~~vra~r~I~~Gee  216 (420)
                      ++.+.....+..+.+.+|.+.+    ..+.+|.|.+-|+||||.||.   .+.++        ++.++++|.++|++|||
T Consensus       159 ~t~~~f~wA~~~v~SRaf~~~~----~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Gee  234 (440)
T 2h21_A          159 VTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQ  234 (440)
T ss_dssp             CCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSB
T ss_pred             CCHHHHHHHHHHhcccceeccC----CCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCE
Confidence            4677788888999999997643    246899999999999999974   33332        35799999999999999


Q ss_pred             cC--CChH-hHHHHh--cCcccc
Q 014710          217 GQ--FDDI-QESAIL--EGYRCK  234 (420)
Q Consensus       217 ~~--~~~~-~~~~l~--~~~~C~  234 (420)
                      ++  |.+. -...|+  +||...
T Consensus       235 i~~sYG~~~~N~~LL~~YGFv~~  257 (440)
T 2h21_A          235 VYIQYDLNKSNAELALDYGFIEP  257 (440)
T ss_dssp             CEECSCTTCCHHHHHHHSSCCCS
T ss_pred             EEEeCCCCCCHHHHHHhCCCCcC
Confidence            75  6654 344443  478664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.60  E-value=0.0017  Score=62.89  Aligned_cols=104  Identities=12%  Similarity=0.016  Sum_probs=82.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHH---------HHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR---------EKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~---------~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      ......+..+...|++++|+..+++++..     .|.+......+         ..++.++...|++++|+.++++++..
T Consensus       212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  286 (450)
T 2y4t_A          212 EAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT  286 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34445566677789999999999999754     56666655444         44488999999999999999998763


Q ss_pred             HHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          344 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       344 ~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                          .|.+.......+..+|.++...|++++|+.++++++.+
T Consensus       287 ----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          287 ----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM  324 (450)
T ss_dssp             ----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                44444444778999999999999999999999999976

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.58  E-value=3.3e-05  Score=76.97  Aligned_cols=109  Identities=14%  Similarity=-0.009  Sum_probs=81.8

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|++.+++++++     +|.   ...++.+++.+|..+|++++|++++++++.+        +
T Consensus        41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~  104 (477)
T 1wao_1           41 IYYGNRSLAYLRTECYGYALGDATRAIEL-----DKK---YIKGYYRRAASNMALGKFRAALRDYETVVKV--------K  104 (477)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            44455677778889999999999999764     344   3567889999999999999999999999876        2


Q ss_pred             hHHHHHHHHhhHH--HHhhcChHHHHHHHH-----------HHHHHHHHhcCCCCchH
Q 014710          353 PLLGLQYYTCGKL--EWFLGDTENAIKSMT-----------EAVEILRITHGTNSPFM  397 (420)
Q Consensus       353 p~~~~~l~~La~~--~~~~g~~~eA~~~l~-----------~A~~i~~~~~G~~h~~~  397 (420)
                      |.....+..++.+  +..+|++++|+..++           +|+++-....|+.++..
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  162 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG  162 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence            3333456667666  888899999999999           88888888888888863

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00053  Score=54.10  Aligned_cols=65  Identities=18%  Similarity=0.063  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ....+..++..+...|+|++|+.++++++..        .|.-...++++|.++..+|++++|+..+++|+++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3456778899999999999999999999876        3445688999999999999999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.58  E-value=0.00041  Score=57.54  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC----------ChHHHHHHHHhhHHHHhhcChHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----------HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  381 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  381 (420)
                      .....+...+..+...|+|++|+.++.+++.......+..          .|.....++++|.++..+|++++|+..+.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456678899999999999999999999999877664322          567788999999999999999999999999


Q ss_pred             HHHH
Q 014710          382 AVEI  385 (420)
Q Consensus       382 A~~i  385 (420)
                      |+.+
T Consensus        89 al~~   92 (162)
T 3rkv_A           89 VLKR   92 (162)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9886

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.54  E-value=0.0015  Score=53.66  Aligned_cols=100  Identities=12%  Similarity=-0.003  Sum_probs=77.3

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..     .+.++.
T Consensus        50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~  116 (166)
T 1a17_A           50 YGNRSLAYLRTECYGYALGDATRAIEL-----DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD  116 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH
Confidence            344555667789999999999999875     2444   456788999999999999999999998765     233433


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                       +...+.++..+...|++++|+..+.++..++..
T Consensus       117 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          117 -AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence             334466666688899999999999999888754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.54  E-value=0.0011  Score=66.90  Aligned_cols=103  Identities=14%  Similarity=0.091  Sum_probs=78.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH-HHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQY  359 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l  359 (420)
                      .+...|++++|++.+++++..     .|.++   .++..++.++...|++++|++++++++......  +..|. .+..+
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~  519 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYAL-----FQYDP---LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATW  519 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHH
Confidence            334456777777777766543     34444   457788999999999999999999998876543  33455 48899


Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      ..+|.++...|++++|+.++++++++     +|+++.+.
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~  553 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVH  553 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----SSCCHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHH
Confidence            99999999999999999999999876     46666443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.54  E-value=0.00076  Score=52.68  Aligned_cols=88  Identities=11%  Similarity=0.038  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCC
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  392 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~  392 (420)
                      ....+..++..+...|++++|+.++++++...        |.....++.+|.++...|++++|+.++++++.+... .++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cch
Confidence            34567789999999999999999999988752        334578899999999999999999999999998764 345


Q ss_pred             CCchHHHHHHHHHHHHH
Q 014710          393 NSPFMKELILKLEEAQA  409 (420)
Q Consensus       393 ~h~~~~~~~~~l~~~~~  409 (420)
                      +++....+...++.+..
T Consensus        74 ~~~~~~~~~~~la~~~~   90 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYF   90 (131)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            55444555555655533

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.53  E-value=0.00029  Score=67.98  Aligned_cols=87  Identities=9%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|++++|+..+++++.+     .|.+   ..++.+++.++...|++++|++++++++.+        +|.-...++++
T Consensus       177 ~~~g~~~eAl~~~~kal~l-----dP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~l  240 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQ-----DAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQR  240 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh-----CccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            3345555555555555543     2333   345566777777778888888877777765        35556677777


Q ss_pred             hHHHHh-hcChHHH-----HHHHHHHHHH
Q 014710          363 GKLEWF-LGDTENA-----IKSMTEAVEI  385 (420)
Q Consensus       363 a~~~~~-~g~~~eA-----~~~l~~A~~i  385 (420)
                      |.++.. .|..++|     +.++++|+.+
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            777777 4444666     4667777664

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.53  E-value=0.00014  Score=61.29  Aligned_cols=96  Identities=9%  Similarity=0.071  Sum_probs=71.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++...        |.-...++
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~   82 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYA   82 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHH-----CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHH
Confidence            345567888888888888764     3444   3577889999999999999999999988764        22356788


Q ss_pred             HhhHH-HHhhcCh--HHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          361 TCGKL-EWFLGDT--ENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       361 ~La~~-~~~~g~~--~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      .+|.+ +...|++  ++|+.++++++++     .|+++..
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  117 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALAL-----DSNEITA  117 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcHHH
Confidence            99999 7789998  9999999999986     4555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.53  E-value=0.0012  Score=55.03  Aligned_cols=93  Identities=13%  Similarity=0.026  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC----C-ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ----F-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~----~-hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ...+.+.+..+...|+|++|+..+.++|.+-.. +|.    + .|..+..+.++|.++..+|++++|+..+.+|++++.+
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            455677888999999999999999999988644 111    1 2345669999999999999999999999999998665


Q ss_pred             hcCCCCchHHHHH----HHHHHHH
Q 014710          389 THGTNSPFMKELI----LKLEEAQ  408 (420)
Q Consensus       389 ~~G~~h~~~~~~~----~~l~~~~  408 (420)
                      . |+-.|......    ..+..+.
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL  112 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALAL  112 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHH
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHH
Confidence            4 45555555544    5554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.49  E-value=0.00078  Score=55.96  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=60.0

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.....+..++.++...|+|++|+.++++++...        |.....++.+|.++..+|++++|+..+++|+.+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45567788899999999999999999999998763        445678999999999999999999999999986

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.47  E-value=0.0012  Score=61.01  Aligned_cols=100  Identities=14%  Similarity=0.011  Sum_probs=74.1

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...|++++|++.+++++..     .|.+. ..........++...|++++|+..+++++..    +    |.....
T Consensus       137 ~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~----p~~~~~  202 (291)
T 3mkr_A          137 VQILLKLDRLDLARKELKKMQDQ-----DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----C----SPTLLL  202 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----S----CCCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhh-----CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----C----CCcHHH
Confidence            33455679999999999998765     35543 2222233334445569999999999998765    2    345668


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      ++.+|.++..+|++++|+..|++|+++     .|+++.+
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~  236 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET  236 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            999999999999999999999999975     3566654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.47  E-value=0.0021  Score=49.30  Aligned_cols=80  Identities=9%  Similarity=-0.074  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      -...|+..+...|+|..|+.+++.++.....-.. .-+.....+..||.++..+|++++|..++++|+.     +.|+|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~   80 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCH
Confidence            3467899999999999999999999887642211 1245668889999999999999999999999986     478887


Q ss_pred             hHHHHH
Q 014710          396 FMKELI  401 (420)
Q Consensus       396 ~~~~~~  401 (420)
                      .+..-+
T Consensus        81 ~~~~n~   86 (104)
T 2v5f_A           81 RANGNL   86 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHhhH
Confidence            664433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.47  E-value=0.0011  Score=54.44  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=63.5

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ++.....+..++.++...|++++|+.++++++..        .|.-...++.+|.++..+|++++|+..|++|+.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            5666778889999999999999999999998765        3444567899999999999999999999999875    


Q ss_pred             cCCCCchH
Q 014710          390 HGTNSPFM  397 (420)
Q Consensus       390 ~G~~h~~~  397 (420)
                       .|+++..
T Consensus        85 -~p~~~~~   91 (148)
T 2vgx_A           85 -DIXEPRF   91 (148)
T ss_dssp             -STTCTHH
T ss_pred             -CCCCchH
Confidence             5677654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.44  E-value=0.0013  Score=53.24  Aligned_cols=76  Identities=17%  Similarity=0.131  Sum_probs=63.9

Q ss_pred             CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      .++.-...+..++..+...|++++|+.++++++..        +|.-...++.+|.++...|++++|+..+++|+.+   
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   81 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---   81 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            45666777888999999999999999999998764        3444567899999999999999999999999885   


Q ss_pred             hcCCCCchH
Q 014710          389 THGTNSPFM  397 (420)
Q Consensus       389 ~~G~~h~~~  397 (420)
                        .|++|..
T Consensus        82 --~p~~~~~   88 (142)
T 2xcb_A           82 --DINEPRF   88 (142)
T ss_dssp             --CTTCTHH
T ss_pred             --CCCCcHH
Confidence              5677654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.44  E-value=0.001  Score=67.36  Aligned_cols=96  Identities=11%  Similarity=-0.093  Sum_probs=79.8

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|++.++++++.     .|.+   ..++..++.++...|++++|++++++++..        +|.
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~  123 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDA-----APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPE  123 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            344555667789999999999999875     3444   567788999999999999999999998876        344


Q ss_pred             HHHHHHHhhHHHHhh---cChHHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFL---GDTENAIKSMTEAVEIL  386 (420)
Q Consensus       355 ~~~~l~~La~~~~~~---g~~~eA~~~l~~A~~i~  386 (420)
                      ....+..+|.++..+   |++++|...++++++.-
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            467889999999999   99999999999998754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0018  Score=63.68  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH---hhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ....+..+...|++++|+..+++++......  +.......++..++.++..   .|++++|+.++++++..        
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------  444 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------  444 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------
Confidence            3445566677899999999999998764321  1222224477889999999   99999999999998875        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      .|.....++.+|.++...|++++|..++++|+++     .|+++.....+..+.
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-----ARTMEEKLQAITFAE  493 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHH
Confidence            2444568899999999999999999999999985     567776665554333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.41  E-value=0.0018  Score=61.10  Aligned_cols=103  Identities=9%  Similarity=-0.037  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .......+..+...|++++|+..+++++.+     .|.+   ..++..++.+|..+|++++|+.++++++.+        
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  259 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL--------  259 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence            445566777788899999999999999875     3444   567789999999999999999999999876        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHH-HHHHHHHHHHHHHhc
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRITH  390 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA-~~~l~~A~~i~~~~~  390 (420)
                      .|.-...+..||.++..+|++++| ..+|++.++.+....
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  299 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE  299 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            344456889999999999999998 567888877666544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.38  E-value=0.00081  Score=52.85  Aligned_cols=71  Identities=14%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          307 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       307 ~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+..+.....+..++..+...|++++|+.++++++..        .|.-...++.+|.++...|++++|+.++++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4566778888999999999999999999999998764        3344678999999999999999999999999985

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.38  E-value=0.0014  Score=65.10  Aligned_cols=94  Identities=12%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC
Q 014710          271 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  350 (420)
Q Consensus       271 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  350 (420)
                      ....+...+..+...|++++|++.|++++..     .|.+   ..++..++.++...|++++|++.+++++..       
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------   88 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-------   88 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4566677888888999999999999999875     3444   467888999999999999999999999875       


Q ss_pred             CChHHHHHHHHhhHHHHhhcChHHHHHHHH
Q 014710          351 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT  380 (420)
Q Consensus       351 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~  380 (420)
                       +|.-...++.+|.++..+|++++|+..++
T Consensus        89 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           89 -KPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             35556789999999999999999999883

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.32  E-value=0.0025  Score=46.41  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ...+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|..
T Consensus        13 ~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~   76 (91)
T 1na3_A           13 YNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNN   76 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCC
Confidence            34455566789999999999999865     3444   456778999999999999999999998875        2444


Q ss_pred             HHHHHHhhHHHHhhc
Q 014710          356 GLQYYTCGKLEWFLG  370 (420)
Q Consensus       356 ~~~l~~La~~~~~~g  370 (420)
                      ...+..+|.++..+|
T Consensus        77 ~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            567788888876654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.32  E-value=0.00051  Score=71.49  Aligned_cols=94  Identities=10%  Similarity=-0.022  Sum_probs=68.7

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  354 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  354 (420)
                      ....+..+...|++++|+..++++++.     .|.+   ..++..++.++...|++++|++.+++++..-        |.
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~  499 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAER-----VGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PG  499 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence            344556667789999999999999875     2444   4677789999999999999999999988762        33


Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      -...++++|.++..+|++++ +.+|++|+++
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWST  529 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence            34455666666666676666 6666666653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.29  E-value=0.0017  Score=52.11  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=61.3

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++.....+..++..+...|++++|+.++++++..     .+.++.....++.+|.++...|++++|+.++++++.+
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3445677788999999999999999999998764     3556667899999999999999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.29  E-value=0.0028  Score=62.91  Aligned_cols=93  Identities=19%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++...        |...
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~  344 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDL-----NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENV  344 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCS
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCH
Confidence            3344455567777777777776553     2333   3445667777777777777777777766531        2223


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+..+|.++...|++++|+.++++++++
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLK  373 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666777777777777777777777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.28  E-value=0.00069  Score=70.51  Aligned_cols=95  Identities=13%  Similarity=0.014  Sum_probs=74.7

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|++++|++.+++++...-..-...++....++..++.++...|++++|++.+++++...        |.-...++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHH
Confidence            55789999999999887221111223345555678889999999999999999999998763        4556789999


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      |.++..+|++++|+..|++|+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.27  E-value=0.0016  Score=51.77  Aligned_cols=66  Identities=20%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .....+..++..+...|+|++|+.++++++..        .|.....++.+|.++..+|++++|+..+++|+.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34567788999999999999999999998876        3445678999999999999999999999999986

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.26  E-value=0.0032  Score=49.57  Aligned_cols=69  Identities=12%  Similarity=-0.008  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCc
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  395 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~  395 (420)
                      ....++..+...|++++|+..+++++..        .|.-...++.||.++...|++++|+..+++|+++     .|+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~   85 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI   85 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH
Confidence            3567888999999999999999998875        3555778999999999999999999999999885     56666


Q ss_pred             hH
Q 014710          396 FM  397 (420)
Q Consensus       396 ~~  397 (420)
                      ..
T Consensus        86 ~~   87 (121)
T 1hxi_A           86 AV   87 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.25  E-value=0.0011  Score=49.64  Aligned_cols=67  Identities=28%  Similarity=0.367  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH-HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~-~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      ...+..+...|++++|+.++++++..        +|.-.. .++.+|.++..+|++++|+..+++|+++     .|+++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence            35677889999999999999998875        233445 8899999999999999999999999975     566664


Q ss_pred             H
Q 014710          397 M  397 (420)
Q Consensus       397 ~  397 (420)
                      .
T Consensus        71 ~   71 (99)
T 2kc7_A           71 L   71 (99)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.23  E-value=0.0027  Score=57.24  Aligned_cols=81  Identities=16%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+++++|++.++++...       .   -..+...++.+|..    .+++++|+.++++++..       .   ....++
T Consensus        55 ~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~  114 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDL-------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCA  114 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHH
Confidence            66777777777776543       1   24556677777777    77788887777777653       1   235677


Q ss_pred             HhhHHHHh----hcChHHHHHHHHHHHHH
Q 014710          361 TCGKLEWF----LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       361 ~La~~~~~----~g~~~eA~~~l~~A~~i  385 (420)
                      .||.++..    .+++++|+.++++|++.
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence            78888877    78888888888887763

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.20  E-value=0.0027  Score=49.27  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+.....+..++..+...|++++|+.++++++..        +|.....++.+|.++...|++++|+.++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            4455677788999999999999999999998875        2344678999999999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.15  E-value=0.0029  Score=48.62  Aligned_cols=64  Identities=23%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..++..++..+...|++++|++++++++..        .|.....++.+|.++...|++++|+.++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            566778899999999999999999998765        2333567899999999999999999999999875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.10  E-value=0.0042  Score=47.25  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...+..++..+...|++++|+.++++++...        |.-...++.+|.++...|++++|..++++++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            4567788999999999999999999987652        333568899999999999999999999999886

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.10  E-value=0.0065  Score=55.57  Aligned_cols=95  Identities=9%  Similarity=-0.103  Sum_probs=73.9

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhH-HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH-H
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-L  355 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~  355 (420)
                      .+......++|++|+..++.+       ....++.. ..++..++.++..+|++++|+.++++++.      |+.-|. .
T Consensus       141 ~a~l~~~~~r~~dA~~~l~~a-------~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~  207 (282)
T 4f3v_A          141 KAVVYGAAERWTDVIDQVKSA-------GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACA  207 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTG-------GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-------hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcccc
Confidence            334556678999998887633       11124443 45889999999999999999999998752      332266 7


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ....+.+|.++..+|+.++|...|+++++.
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            778999999999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.06  E-value=0.00084  Score=50.86  Aligned_cols=62  Identities=13%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++..++.++...|++++|+.++++++...        |.....++.+|.++..+|++++|+.++++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34568888999999999999999987752        333567899999999999999999999999876

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.00  E-value=0.00037  Score=57.70  Aligned_cols=40  Identities=15%  Similarity=0.033  Sum_probs=34.6

Q ss_pred             hccccCCCCcC---CceeEEeCCEEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~P---N~~~~f~~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++||+|.|   |+...-.++++.++|+|+|++|||+.+.+
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Y  139 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYY  139 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEE
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEec
Confidence            56789999965   99887779999999999999999987543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.90  E-value=0.0018  Score=50.44  Aligned_cols=62  Identities=19%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             HhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchH
Q 014710          326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  397 (420)
Q Consensus       326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~  397 (420)
                      ..|++++|+.++++++..     +..+|.....++.||.++..+|++++|+.++++|+++     .|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHH
Confidence            468899999999988763     3446899999999999999999999999999999976     5566543

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=96.87  E-value=0.00054  Score=57.61  Aligned_cols=40  Identities=18%  Similarity=0.096  Sum_probs=34.4

Q ss_pred             hccccCCCCc---CCceeEEeCCEEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~---PN~~~~f~~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      ++.++||+|.   +|+...-.++++.++|+|+|++|||+.+.+
T Consensus       101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwY  143 (170)
T 3ep0_A          101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWY  143 (170)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEE
T ss_pred             eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEee
Confidence            4568899997   898877778999999999999999987544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.87  E-value=0.0041  Score=57.06  Aligned_cols=69  Identities=14%  Similarity=0.038  Sum_probs=58.6

Q ss_pred             ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH--HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          310 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL--GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       310 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~--~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      +|.-..++.+++.++...|++++|+..+++++..        +|..  +..+..|+.++..+|+.++|...|++++..+
T Consensus       215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~  285 (287)
T 3qou_A          215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYAL  285 (287)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence            3444567889999999999999999999998876        3444  6788999999999999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.86  E-value=0.0052  Score=56.24  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=67.6

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH-HH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL  357 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~  357 (420)
                      |..+...|++++|.+++..+..     .+|.++    ....++.++.+.++|++|+.+++++..       ..+|.. ..
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~-----~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~d~~~~~~  172 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPV-----AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSAGK-------WPDKFLAGA  172 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCC-----TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTGGG-------CSCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHhhc-------cCCcccHHH
Confidence            3334556889999887765532     233333    678888899999999999999875422       225654 45


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      ..+.||.++..+|++++|+..|++|.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            89999999999999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.86  E-value=0.004  Score=59.58  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh--------cCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRV--------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~--------~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...+..++..+...|+|++|+.++++++......        .....|..+..++++|.++..+|++++|+.++++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            4456778999999999999999999999876553        11257888999999999999999999999999999985

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.79  E-value=0.0092  Score=53.67  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=65.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+++++|++.++++...       .   -..++..++.+|..    .+++++|+.++++++..     +  +   ...++
T Consensus        91 ~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~--~---~~a~~  150 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----N--D---GDGCT  150 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T--C---HHHHH
T ss_pred             ccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----C--c---HHHHH
Confidence            88888998888888653       1   24677888999998    89999999999988763     1  2   35778


Q ss_pred             HhhHHHHh----hcChHHHHHHHHHHHHH
Q 014710          361 TCGKLEWF----LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       361 ~La~~~~~----~g~~~eA~~~l~~A~~i  385 (420)
                      .||.++..    .+++++|+.++++|++.
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            89999988    89999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.77  E-value=0.0048  Score=51.76  Aligned_cols=67  Identities=13%  Similarity=-0.041  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ..++..++.++...|++++|+.++++++..    .|..  .-...+..||.++..+|+.++|+..|++++..+
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~--~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKV----NLGA--QDGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTT--TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----Cccc--ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            467788999999999999999999988654    1211  113478899999999999999999999998754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.74  E-value=0.0033  Score=57.55  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...+..++..+...|++++|+.++++++..        +|.....++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            456678899999999999999999999876        4555678999999999999999999999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.74  E-value=0.012  Score=44.19  Aligned_cols=82  Identities=10%  Similarity=0.016  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhhc---HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcC
Q 014710          315 QTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  391 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G  391 (420)
                      .++..++.++...++   .++|..+++++|..        .|.-...++.||.+++..|++++|+.+|+++++.     .
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-----~   73 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-----N   73 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC-----C
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence            444556666655444   68999999999886        5777778899999999999999999999998763     4


Q ss_pred             CCCchHHHHHHHHHHHHH
Q 014710          392 TNSPFMKELILKLEEAQA  409 (420)
Q Consensus       392 ~~h~~~~~~~~~l~~~~~  409 (420)
                      |+.|....+...+++++.
T Consensus        74 p~~~~~~~i~~~I~~A~~   91 (93)
T 3bee_A           74 DPNLDRVTIIESINKAKK   91 (93)
T ss_dssp             CTTCCHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHh
Confidence            457777778888887765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.73  E-value=0.0035  Score=46.80  Aligned_cols=60  Identities=18%  Similarity=0.279  Sum_probs=48.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      ..+..+...|++++|+..+++++..     .|.++.  .++..++.++...|++++|++++++++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4455666789999999999999774     355432  27788999999999999999999998865

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.71  E-value=0.0069  Score=51.76  Aligned_cols=88  Identities=9%  Similarity=-0.111  Sum_probs=68.5

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|++++++++.+        +
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~  152 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNN---VKALYKLGVANMYFGFLEEAKENLYKAASL--------N  152 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------S
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------C
Confidence            33445566677889999999999999875     3333   567788999999999999999999998876        3


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAI  376 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~  376 (420)
                      |.-...+..++.++..+++.+++.
T Consensus       153 p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          153 PNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            444567888899988888887776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.67  E-value=0.032  Score=45.80  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHHhh---cHHHHHHHHHHhHHHHHHhcCCCCh-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ...++..+++-.+.+.+   ++++++.+++.++..-       +| .....+|.||..+..+|+|++|+.++++++++  
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            45567777777888765   7888988888776532       56 66889999999999999999999999999875  


Q ss_pred             HhcCCCCchHHHHHHHHHHHH
Q 014710          388 ITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       388 ~~~G~~h~~~~~~~~~l~~~~  408 (420)
                         -|+|....+++..+.+..
T Consensus       101 ---eP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A          101 ---EPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             ---CTTCHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHH
Confidence               578888888777766554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.66  E-value=0.036  Score=45.96  Aligned_cols=104  Identities=12%  Similarity=0.058  Sum_probs=73.4

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC----
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----  351 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~-~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----  351 (420)
                      +....+...+.|+.|+-+...++.....--.. .-..-+++...+++++...|+|.+|..+++++|...+.+.-..    
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            33344555678888888888877765321111 1123567788899999999999999999999999887442111    


Q ss_pred             -------------ChHHHHHHHHhhHHHHhhcChHHHHHHHH
Q 014710          352 -------------HPLLGLQYYTCGKLEWFLGDTENAIKSMT  380 (420)
Q Consensus       352 -------------hp~~~~~l~~La~~~~~~g~~~eA~~~l~  380 (420)
                                   -+.=...-|++|..+.+++++++|+..|+
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                         11123577999999999999999887765

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=96.51  E-value=0.0014  Score=56.36  Aligned_cols=41  Identities=12%  Similarity=0.032  Sum_probs=35.2

Q ss_pred             hccccCCCCc---CCceeEEeCCEEEEEEecCCCCCCccCCChH
Q 014710          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDDI  222 (420)
Q Consensus       182 ~~s~~NHSC~---PN~~~~f~~~~~~vra~r~I~~Gee~~~~~~  222 (420)
                      .+-++||+|.   +|+...-.++++.++|+|+|++|||+.+.+-
T Consensus       131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg  174 (196)
T 3dal_A          131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYC  174 (196)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEEC
T ss_pred             eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecC
Confidence            5678999997   7988877799999999999999999986543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.49  E-value=0.014  Score=43.93  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  345 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  345 (420)
                      ...+..+...|++++|+..+++++..     .|.++   .++..++.+|...|++++|++++++++.+..
T Consensus        11 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           11 YALAQEHLKHDNASRALALFEELVET-----DPDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            44555667789999999999999875     34444   4778899999999999999999999988754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.45  E-value=0.012  Score=58.03  Aligned_cols=90  Identities=6%  Similarity=-0.029  Sum_probs=70.8

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      ......+..+...|++++|+..+++++.+     .|.+   ..++..++.+|..+|++++|+.++++++.+        .
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~  381 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGL-----DSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N  381 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            33445666677889999999999999875     3444   567889999999999999999999998875        4


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKS  378 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~  378 (420)
                      |.-...+..|+.++..++++++|...
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55567889999999999999887643

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=96.31  E-value=0.0022  Score=52.95  Aligned_cols=40  Identities=13%  Similarity=-0.007  Sum_probs=35.3

Q ss_pred             hccccCCCCc---CCceeEEeCCEEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~---PN~~~~f~~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++||+|.   +|+...-.++++.++|+|+|++|||+.+.+
T Consensus        96 Wmr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y  138 (152)
T 3ihx_A           96 WMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWY  138 (152)
T ss_dssp             GGGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEE
T ss_pred             ceeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEec
Confidence            5678999998   799987778999999999999999988654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.28  E-value=0.015  Score=53.66  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh
Q 014710          289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  368 (420)
Q Consensus       289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~  368 (420)
                      ++|+..+++++..    +.|.+   ..++..++.++...|++++|.+.+++++.+     ++.++..  .+..+|.++..
T Consensus        81 ~~A~~~~~rAl~~----~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~  146 (308)
T 2ond_A           81 DEAANIYERAIST----LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHTT----TTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHH
Confidence            7788888777642    23444   346677888888889999999998888763     3444432  67778888888


Q ss_pred             hcChHHHHHHHHHHHHH
Q 014710          369 LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       369 ~g~~~eA~~~l~~A~~i  385 (420)
                      .|++++|+..|++|++.
T Consensus       147 ~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          147 AEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHCHHHHHHHHHHHHTS
T ss_pred             hcCHHHHHHHHHHHHhc
Confidence            88888888888888753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.15  E-value=0.04  Score=50.71  Aligned_cols=94  Identities=10%  Similarity=-0.059  Sum_probs=50.4

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHH-------------HH-hcCC
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY-------------QR-VYPQ  350 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~-------------~~-~~g~  350 (420)
                      .|++++|+..|+++++     +.|.++..  ++..++.++...|++++|...+++++..-             +. ..|.
T Consensus       112 ~~~~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  184 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             TTCHHHHHHHHHHHHT-----SSSSCTHH--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             cCCHHHHHHHHHHHHh-----ccccCccH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence            4566666666666654     23443321  44445555555566666655555554310             00 0000


Q ss_pred             -------------CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          351 -------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       351 -------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                                   .+|.-...+..+|.++..+|++++|+.+|++|+..
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                         01233455666777777778888888888877764

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=95.97  E-value=0.0045  Score=54.45  Aligned_cols=41  Identities=12%  Similarity=-0.055  Sum_probs=35.3

Q ss_pred             hccccCCCCc---CCceeEEeCCEEEEEEecCCCCCCccCCChH
Q 014710          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDDI  222 (420)
Q Consensus       182 ~~s~~NHSC~---PN~~~~f~~~~~~vra~r~I~~Gee~~~~~~  222 (420)
                      ++.++||+|.   +|++..-.++++.++|+|+|++|||+.+.+-
T Consensus       140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg  183 (237)
T 3ray_A          140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYS  183 (237)
T ss_dssp             GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEEC
T ss_pred             ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeC
Confidence            5678999996   6988877799999999999999999986543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.97  E-value=0.031  Score=48.50  Aligned_cols=64  Identities=13%  Similarity=-0.031  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh----hcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~A~~i  385 (420)
                      +..+|+.+|..    .+++++|+++++++...      ..+......+++||.++..    .+++++|+.++++|.+.
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            34455555554    45566666665555432      1122557777777777777    66777777777777654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.96  E-value=0.012  Score=55.42  Aligned_cols=96  Identities=8%  Similarity=-0.145  Sum_probs=50.9

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      .....+..+...|++++|+..+++++.+     .|.+   ..++..++.+|...|++++|+.++++++.+.        |
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p  295 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYA--------P  295 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------C
Confidence            4455677778889999999999999875     3444   5678899999999999999999999998763        3


Q ss_pred             HHHHHHHHhhHHHH-hhcChHHHHHHHHHHHHH
Q 014710          354 LLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       354 ~~~~~l~~La~~~~-~~g~~~eA~~~l~~A~~i  385 (420)
                      .-...+..|+.+.. ..+..+++..+|.+++..
T Consensus       296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ---------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            33455666777633 456667777788777654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.83  E-value=0.2  Score=47.96  Aligned_cols=107  Identities=17%  Similarity=0.022  Sum_probs=86.0

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      +.+.-+...|++.+|.+++.++..-..+.  .....+++++..-+++|...+++..+..++.++..+...+|  .||.+-
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~  179 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQ  179 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence            45566778899999999999988766543  34577889999999999999999999999999998888776  667544


Q ss_pred             HH-HHHhhHHHH-hhcChHHHHHHHHHHHHHHH
Q 014710          357 LQ-YYTCGKLEW-FLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       357 ~~-l~~La~~~~-~~g~~~eA~~~l~~A~~i~~  387 (420)
                      .. ...-|.+++ ..++|.+|..++-+|..-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            44 444477777 79999999999999976554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.73  E-value=0.073  Score=46.03  Aligned_cols=65  Identities=14%  Similarity=0.008  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhh-c-----ChHHHHHHHHH
Q 014710          312 NLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-G-----DTENAIKSMTE  381 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~-g-----~~~eA~~~l~~  381 (420)
                      ....+..+|+.+|..    .+++++|+.++++++..      +.++.   .+++||.+|... |     ++++|+.+|++
T Consensus       123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~  193 (212)
T 3rjv_A          123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY---AEYWAGMMFQQGEKGFIEPNKQKALHWLNV  193 (212)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH---HHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence            346677777777777    66777777777766421      44443   567777777653 3     67777777777


Q ss_pred             HHHH
Q 014710          382 AVEI  385 (420)
Q Consensus       382 A~~i  385 (420)
                      |.+.
T Consensus       194 A~~~  197 (212)
T 3rjv_A          194 SCLE  197 (212)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            7654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.68  E-value=0.23  Score=47.63  Aligned_cols=112  Identities=8%  Similarity=0.050  Sum_probs=80.0

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhh-hcCCC--Ch-----------hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHh
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKK-LYHPF--SV-----------NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV  347 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~-~l~~~--h~-----------~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~  347 (420)
                      ....|+.+++...+++++.+++. .|...  ..           ..+.+...++.++...|++.+|+..+++++..    
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----  200 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----  200 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            33457778888888888887653 23221  11           12234456667777889999999888877544    


Q ss_pred             cCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chHHHHH
Q 014710          348 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELI  401 (420)
Q Consensus       348 ~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~~~~~  401 (420)
                          ||.-=..+..|-.++...|+..+|+..|++..+.+...+|-+. |.+..+.
T Consensus       201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence                4555556777778888999999999999999999999999665 3444444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.55  E-value=0.081  Score=40.36  Aligned_cols=64  Identities=11%  Similarity=-0.014  Sum_probs=51.4

Q ss_pred             HHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH
Q 014710          274 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  345 (420)
Q Consensus       274 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  345 (420)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++.+..
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3344556667789999999999999875     3444   45678899999999999999999999988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.40  E-value=0.3  Score=36.79  Aligned_cols=73  Identities=7%  Similarity=-0.073  Sum_probs=55.2

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ..+..++.++++..|+..++.++.....-- ........++..|+.++.++|+++.|+.+.++++..     -|.|+..
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~   82 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQRA   82 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHH
Confidence            345556778999999999999987653211 013456678899999999999999999999998764     4666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.38  E-value=0.12  Score=41.42  Aligned_cols=82  Identities=16%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHH
Q 014710          284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  359 (420)
Q Consensus       284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l  359 (420)
                      ..+..++|++.|+++...       .+   ..+..+|+.+|..    .+++++|+.+++++.+.       .+   ...+
T Consensus        37 ~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~   96 (138)
T 1klx_A           37 SQINKQKLFQYLSKACEL-------NS---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGC   96 (138)
T ss_dssp             TTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHH
T ss_pred             cCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHH
Confidence            345567788888877553       22   4667889999988    78999999999998653       23   4578


Q ss_pred             HHhhHHHHh----hcChHHHHHHHHHHHHH
Q 014710          360 YTCGKLEWF----LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       360 ~~La~~~~~----~g~~~eA~~~l~~A~~i  385 (420)
                      ++||.+|..    .+++++|+.+|++|.+.
T Consensus        97 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           97 LILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999999998    89999999999999774

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=94.79  E-value=0.3  Score=42.52  Aligned_cols=98  Identities=9%  Similarity=-0.035  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          292 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      ..++..++.+..+.|=|..-.-.-.+..-++.|..     .|+.+.|.+.++.+.++...-+|+.||.+.....+.+..|
T Consensus        98 ~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFy  177 (227)
T 2o8p_A           98 KAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYIL  177 (227)
T ss_dssp             HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Confidence            34555666666666656541222222333343333     3567889999999999999999999999999999998888


Q ss_pred             Hh-hcChHHHHHHHHHHHHHHHHh
Q 014710          367 WF-LGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       367 ~~-~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+ +++.++|..+.++|.++.+..
T Consensus       178 YEIln~p~~Ac~lAk~Afd~~~~~  201 (227)
T 2o8p_A          178 SEKYGEKKQVFNMLNSLGKILELQ  201 (227)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHH
Confidence            75 699999999999999986443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.74  E-value=0.41  Score=47.44  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=35.5

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  342 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  342 (420)
                      ...|++++|+.+|++++..     .|.++.  .++..++.++...|++++|.+++++++.
T Consensus       332 ~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          332 ESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHS-----SSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHHhCc-----cccCch--HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4467888888888888753     344432  3555666666677777777777776654

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.59  E-value=0.021  Score=37.89  Aligned_cols=38  Identities=29%  Similarity=0.690  Sum_probs=30.8

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhchhh
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~   70 (420)
                      ...|.-|.. .....|++|.. .|||-.|.+    .|+.+|.-.
T Consensus        12 ~~~C~vC~~-~~kY~CPrC~~-~yCSl~C~k----~Hk~~C~~~   49 (56)
T 2yqq_A           12 TVVCVICLE-KPKYRCPACRV-PYCSVVCFR----KHKEQCNPE   49 (56)
T ss_dssp             CCCCTTTCS-CCSEECTTTCC-EESSHHHHH----HHHHHCCCC
T ss_pred             CCccCcCcC-CCeeeCCCCCC-CeeCHHHHH----HHHhhCcCC
Confidence            447999999 67899999998 599999985    677668543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.52  E-value=0.19  Score=45.72  Aligned_cols=86  Identities=12%  Similarity=-0.058  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-----hcHHHHHHHHHHhHHHHHHhcCCCChHH-HHHHHHh
Q 014710          289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTC  362 (420)
Q Consensus       289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~L  362 (420)
                      .++..++++++++-      .++.-..++..|+.+|...     |+.++|.++++++|.+        +|.- ....+..
T Consensus       180 ~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~Y  245 (301)
T 3u64_A          180 HAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHHH
Confidence            45666677776652      2333455888888889885     9999999999999988        4643 6678888


Q ss_pred             hHHHHh-hcChHHHHHHHHHHHHHHHH
Q 014710          363 GKLEWF-LGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       363 a~~~~~-~g~~~eA~~~l~~A~~i~~~  388 (420)
                      |..+.. .|++++|..++++|+++=-.
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            998887 49999999999999885433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.09  E-value=0.31  Score=53.82  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHH----------------------HHHhcCCCChHHHHHHHHhhHHHHhhcChH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPV----------------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTE  373 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------------------~~~~~g~~hp~~~~~l~~La~~~~~~g~~~  373 (420)
                      .+..++..+.+.|+|++|+++++.+...                      ++.+..  .+.. ..+.++|..+...|+++
T Consensus      1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~--~~n~-ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A         1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--GPNN-AHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHh--CCCH-HHHHHHHHHHHhcCCHH
Confidence            4455788888889999999988664422                      122221  1222 24557888888899999


Q ss_pred             HHHHHHHHH
Q 014710          374 NAIKSMTEA  382 (420)
Q Consensus       374 eA~~~l~~A  382 (420)
                      +|..+|.+|
T Consensus      1213 eA~~~Y~kA 1221 (1630)
T 1xi4_A         1213 AAKLLYNNV 1221 (1630)
T ss_pred             HHHHHHHhh
Confidence            999999887

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.01  E-value=0.17  Score=55.88  Aligned_cols=94  Identities=10%  Similarity=-0.030  Sum_probs=67.7

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH---------
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------  346 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---------  346 (420)
                      ...+..+...|++++|+..|..+                ..+..++..+.++|++++|++.++++....-.         
T Consensus      1199 ~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1199 QQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            34566667778888888777764                35677888999999999999999888664221         


Q ss_pred             --------hcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          347 --------VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       347 --------~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                              .+|-....-+..+..++..|...|.++||+.++++|+.+
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                    112222223345668888898999999999999999653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.98  E-value=0.55  Score=43.31  Aligned_cols=106  Identities=11%  Similarity=0.014  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC--ChHHHHHHHHhhH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF--HPLLGLQYYTCGK  364 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~--hp~~~~~l~~La~  364 (420)
                      ++.+|...|+++...     .|. ......+.+   ++..+|+|++|.+..++++..+-.+-..+  .|.-+..+.++..
T Consensus       193 ~~q~A~~~f~El~~~-----~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~  263 (310)
T 3mv2_B          193 TATSNFYYYEELSQT-----FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT  263 (310)
T ss_dssp             TTTHHHHHHHHHHTT-----SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh-----CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence            778888888886432     122 111222222   79999999999998886665542221110  1333556667777


Q ss_pred             HHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  408 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~  408 (420)
                      +...+|+  +|..++.++.+     .-|+||.+.++..+=+.-.
T Consensus       264 l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~k~~~Fd  300 (310)
T 3mv2_B          264 LALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQEIDAKFD  300 (310)
T ss_dssp             HHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence            7777887  88888888765     4599999998876655443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.97  E-value=0.15  Score=40.86  Aligned_cols=76  Identities=12%  Similarity=0.011  Sum_probs=58.7

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      ++++|++.|+++.+.       .++.-.     |+.+|...+.+++|+++++++.+.       .+   ...+++||.++
T Consensus        10 d~~~A~~~~~~aa~~-------g~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y   67 (138)
T 1klx_A           10 DLKKAIQYYVKACEL-------NEMFGC-----LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHT-------TCTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC-------CCHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHHH
Confidence            456778888777543       233322     788888888888999999988654       23   46889999999


Q ss_pred             Hh----hcChHHHHHHHHHHHH
Q 014710          367 WF----LGDTENAIKSMTEAVE  384 (420)
Q Consensus       367 ~~----~g~~~eA~~~l~~A~~  384 (420)
                      ..    .+++++|+.+|++|.+
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~   89 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACG   89 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHc
Confidence            98    8999999999999976

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.90  E-value=0.22  Score=49.48  Aligned_cols=86  Identities=12%  Similarity=0.052  Sum_probs=61.6

Q ss_pred             CCChH-------HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          285 CGNHQ-------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       285 ~g~~~-------~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .|+++       +|+..+++++..    +.|.   -..++..++.++...|++++|...+++++.+     ++.++.  .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~----~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIST----LLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--L  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTT----TCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHH--H
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHH----hCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCch--H
Confidence            57776       677777776431    1233   3556778888999999999999999998864     444442  4


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+..++.++...|++++|+.++++|++
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            667777777777788888888887765

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=93.87  E-value=0.018  Score=38.51  Aligned_cols=36  Identities=28%  Similarity=0.696  Sum_probs=29.1

Q ss_pred             CccCccccC---CCCCcCCCCCCcccccChhhchhhhhhhHhhch
Q 014710           27 ISRCDGCFA---SSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (420)
Q Consensus        27 ~~~C~~C~~---~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~   68 (420)
                      ...|.-|..   ......||+|.. .|||-.|.+    .|+ +|.
T Consensus        11 ~~~C~vC~~~~~~~akY~CPrC~~-rYCSl~C~k----~Hk-~Cs   49 (59)
T 1x4s_A           11 AGPCGFCPAGEVQPARYTCPRCNA-PYCSLRCYR----THG-TCA   49 (59)
T ss_dssp             CEEECSSCTTCCEEECEECTTTCC-EESSHHHHH----HHC-CGG
T ss_pred             CCcCcCCCCCcCCCccccCcCCCC-CccChHHHH----HHh-HhC
Confidence            468999986   345899999998 599999996    566 784

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.64  E-value=1.4  Score=34.58  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhc
Q 014710          312 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  390 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~  390 (420)
                      ...++..++|-++.....-..    -++.+.+++.++...+| ..-..+|.||..+..+|+|++|+.+.+..+++     
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-----  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence            455666777777776543332    12344445555555557 78889999999999999999999998887764     


Q ss_pred             CCCCchHHHHHHHHHH
Q 014710          391 GTNSPFMKELILKLEE  406 (420)
Q Consensus       391 G~~h~~~~~~~~~l~~  406 (420)
                      -|+++....+...+.+
T Consensus       104 eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A          104 EPQNNQAKELERLIDK  119 (126)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            5677777766665554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.62  E-value=0.095  Score=50.92  Aligned_cols=82  Identities=15%  Similarity=0.020  Sum_probs=53.2

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      |+.+...|++++|++.++++          ++   ..++..+..++...|+|+.|...+..+         ..||.-   
T Consensus       155 A~~L~~Lg~yq~AVea~~KA----------~~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---  209 (449)
T 1b89_A          155 ASTLVHLGEYQAAVDGARKA----------NS---TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---  209 (449)
T ss_dssp             HHHHHTTTCHHHHHHHHHHH----------TC---HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---
T ss_pred             HHHHHHhccHHHHHHHHHHc----------CC---chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---
Confidence            44445566666666666655          11   345566667777777777775544431         134543   


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +..+..+|..+|++++|+.+|++++.+
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            446788899999999999999998643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=93.56  E-value=0.53  Score=46.14  Aligned_cols=80  Identities=11%  Similarity=-0.001  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .+++++|+..++++...       .+   ..+...|+.+|..    .+++++|+++++++.+.       .+   ...++
T Consensus        56 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~  115 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ-------GY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GL---PQAQQ  115 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHH
Confidence            56677777777666432       11   2345556666665    56666666666665431       12   13344


Q ss_pred             HhhHHHHh----hcChHHHHHHHHHHHH
Q 014710          361 TCGKLEWF----LGDTENAIKSMTEAVE  384 (420)
Q Consensus       361 ~La~~~~~----~g~~~eA~~~l~~A~~  384 (420)
                      .||.++..    .+++++|+.+|++|.+
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            45555554    4455555555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=93.52  E-value=0.45  Score=46.67  Aligned_cols=59  Identities=7%  Similarity=-0.041  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh----hcChHHHHHHHHHHHH
Q 014710          316 TREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  384 (420)
Q Consensus       316 ~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~A~~  384 (420)
                      +...|+.+|..    .+++++|+++++++++.       .+   ...++.||.++..    .+++++|+.+|++|.+
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            34444444444    44555555555544331       11   2345556666655    5666666666666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.49  E-value=0.15  Score=42.15  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh-----------cHHHHHHHHHHhHHH
Q 014710          288 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----------DWKEALAYCQLTIPV  343 (420)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~l~~  343 (420)
                      +++|+..|++++++        +|....++.+++.+|..+|           ++++|++++++++.+
T Consensus        62 ~~eAi~~le~AL~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           62 IQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            45777777777765        4445667788999988774           899999999999877

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.36  E-value=0.57  Score=34.63  Aligned_cols=65  Identities=11%  Similarity=-0.102  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHH
Q 014710          288 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  365 (420)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~  365 (420)
                      .++|..++++++..        +|.-.+++..++..+...|+|++|+.+.++++..    .|. .|.+...-..++.+
T Consensus        25 ~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~----~p~-~~~~~~i~~~I~~A   89 (93)
T 3bee_A           25 TDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS----NDP-NLDRVTIIESINKA   89 (93)
T ss_dssp             CHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC----CCT-TCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-CccHHHHHHHHHHH
Confidence            57899999999874        5555677778899999999999999999988653    344 66666555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.28  E-value=5.8  Score=37.77  Aligned_cols=105  Identities=16%  Similarity=0.091  Sum_probs=75.4

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHH--HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhh
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  363 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~--~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  363 (420)
                      +..+..++++..++.-.+.    .+-..++  +-..|+.+|...|+|.+|++...+++.-..+.  .+.......+..-.
T Consensus        73 ~~~~~~~~~~~~~~~~a~~----~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~  146 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQ----EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLES  146 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence            3444445555555443221    1222334  44589999999999999999999998877664  33466667777779


Q ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHH
Q 014710          364 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  398 (420)
Q Consensus       364 ~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~  398 (420)
                      +++..++++.++..+|.+|..+....+  -||.+.
T Consensus       147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~  179 (394)
T 3txn_A          147 KTYHALSNLPKARAALTSARTTANAIY--CPPKVQ  179 (394)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence            999999999999999999999987664  666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.02  E-value=1.2  Score=43.04  Aligned_cols=101  Identities=6%  Similarity=-0.112  Sum_probs=75.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH-
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-  355 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-  355 (420)
                      +.|.-+...|++++|.+.+.++....   .++  -..+++...+++++...++|..+..+..++.....   ...+|.. 
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~~  207 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWERR  207 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHHH
Confidence            45555667799999999998886644   222  45678888899999999999999999999865543   3344443 


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +....--|.+++..++|.+|..+|.++...
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            444445577888899999999999887653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.79  E-value=0.52  Score=44.55  Aligned_cols=64  Identities=16%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          313 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ...++..++.++...|++++|+.++++++.+-        |. ...+..+|+++...|++++|++.|.+|+.+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33445556666666799999999999998872        22 456788999999999999999999999885

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.75  E-value=2  Score=34.86  Aligned_cols=87  Identities=11%  Similarity=0.157  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh
Q 014710          289 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  368 (420)
Q Consensus       289 ~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~  368 (420)
                      ++.++.|+++......--+......+.+.-.-|. +...+|.++|.++++.++.+        |...|..+...|+--..
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiR  106 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELS  106 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHH
Confidence            5666777777654211112222223333322332 24558999999999998875        55557777777888788


Q ss_pred             hcChHHHHHHHHHHHH
Q 014710          369 LGDTENAIKSMTEAVE  384 (420)
Q Consensus       369 ~g~~~eA~~~l~~A~~  384 (420)
                      +|+...|.+.|.+|+.
T Consensus       107 qgnl~kARkILg~AiG  122 (161)
T 4h7y_A          107 QGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhc
Confidence            9999999999999988

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=91.74  E-value=6.5  Score=34.65  Aligned_cols=77  Identities=10%  Similarity=-0.015  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLE  405 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~---~G~~h~~~~~~~~~l~  405 (420)
                      .+.|.+.++.+.++...-+|+.||.+....++.+..|.+ +++.++|..+.++|.+-....   +++++  +++....|.
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~ees--ykDstlImq  224 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDS--YKDSTLIMQ  224 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCccc--hHHHHHHHH
Confidence            356788899999999999999999999999999988887 799999988888877654433   33432  455444444


Q ss_pred             HHH
Q 014710          406 EAQ  408 (420)
Q Consensus       406 ~~~  408 (420)
                      -+|
T Consensus       225 LLR  227 (248)
T 3uzd_A          225 LLR  227 (248)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=91.47  E-value=0.69  Score=45.03  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=13.0

Q ss_pred             HHHHhhHHHHhhc-----ChHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLG-----DTENAIKSMTEAV  383 (420)
Q Consensus       358 ~l~~La~~~~~~g-----~~~eA~~~l~~A~  383 (420)
                      .+++||.++. .|     ++++|+.+|++|.
T Consensus       285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            4455555554 33     5555555555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=91.29  E-value=0.13  Score=50.02  Aligned_cols=54  Identities=9%  Similarity=0.029  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++..++..+...|.|++|..++.++                ..+..||.++..+|++++|.+.+++|..+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence            8889999999999999999999876                47889999999999999999999998433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.60  E-value=5.5  Score=38.63  Aligned_cols=102  Identities=10%  Similarity=0.001  Sum_probs=75.2

Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhhcCCC-ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChH-HHHHH
Q 014710          282 LTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQY  359 (420)
Q Consensus       282 ~~~~g~~~~a~~~~~~~~~~~~~~l~~~-h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l  359 (420)
                      ....|++.+|.+++..+..   ...+.. ....++.+...+++|...+||..|..+..++.......  ..+|. .+..+
T Consensus       147 ~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~  221 (445)
T 4b4t_P          147 KKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYY  221 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHH
Confidence            4456899999998888753   223333 34467788888899999999999999998875543333  34454 55666


Q ss_pred             HHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          360 YTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       360 ~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ..+|.++...++|.+|..+|.++......
T Consensus       222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          222 NLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            67799999999999999999988775544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.60  E-value=1.2  Score=36.33  Aligned_cols=72  Identities=10%  Similarity=-0.041  Sum_probs=51.5

Q ss_pred             HHHHHHHhhhhcCC---ChHHHHHHHHHHHHHhhhhcCCCCh-hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710          273 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  348 (420)
Q Consensus       273 ~~l~~~a~~~~~~g---~~~~a~~~~~~~~~~~~~~l~~~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  348 (420)
                      ++.+.-|..+....   ++++++.+++.+++.       .+| ..-+.++.|+..+.+.|+|++|++++.++|.+-    
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie----  101 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE----  101 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence            44455566555554   456788888777653       234 456788999999999999999999999998873    


Q ss_pred             CCCChHHH
Q 014710          349 PQFHPLLG  356 (420)
Q Consensus       349 g~~hp~~~  356 (420)
                       |+|+...
T Consensus       102 -P~n~QA~  108 (152)
T 1pc2_A          102 -PQNNQAK  108 (152)
T ss_dssp             -TTCHHHH
T ss_pred             -CCCHHHH
Confidence             5555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.47  E-value=3.6  Score=33.94  Aligned_cols=95  Identities=14%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             HHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-----
Q 014710          321 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-----  394 (420)
Q Consensus       321 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-----  394 (420)
                      +..+...|.|+.|.-.+..++.+.+.--....| .....++.+|.+++..|+|..|..+|++|+...+...-...     
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            345566789999999888877775431111123 45667888899999999999999999999998885431111     


Q ss_pred             ------------chHHHHHHHHHHHHHHHhccc
Q 014710          395 ------------PFMKELILKLEEAQAEASYKL  415 (420)
Q Consensus       395 ------------~~~~~~~~~l~~~~~~~~~~~  415 (420)
                                  +.-.++..+++.+..++...+
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence                        112367788888877665443

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=90.16  E-value=6.6  Score=34.94  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhhhcCCCC--hhHHHHHHHHHHHHHHh-----h-----cHHHHHHHHHHhHHHHHHhc--CCCChHHHH
Q 014710          292 VSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMEL-----E-----DWKEALAYCQLTIPVYQRVY--PQFHPLLGL  357 (420)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~h--~~~~~~~~~L~~~~~~~-----g-----~~~~A~~~~~~~l~~~~~~~--g~~hp~~~~  357 (420)
                      ..++..++.+..+.|=|..  ...+-.+..-++.|..+     |     -.+.|.+.++.+.++.+.-+  |+.||.+..
T Consensus       118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG  197 (268)
T 3efz_A          118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA  197 (268)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence            4455566666555444432  11122223334444432     2     24567888999999998889  999999999


Q ss_pred             HHHHhhHHHHh-hcChHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWF-LGDTENAIKSMTEAVEI  385 (420)
Q Consensus       358 ~l~~La~~~~~-~g~~~eA~~~l~~A~~i  385 (420)
                      ...+.+..|.+ +++.++|..+.++|.+-
T Consensus       198 LaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          198 TILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999886 79999999999999887

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=90.04  E-value=6.2  Score=35.11  Aligned_cols=57  Identities=11%  Similarity=0.033  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~  386 (420)
                      .+.|.+.++.+.++.+.-+|+.||.+....++.+..|.+ +++.++|..+.++|.+-.
T Consensus       151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            346788899999999888999999999999999988887 699999888877766544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.90  E-value=6  Score=31.26  Aligned_cols=82  Identities=16%  Similarity=0.024  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHh---hcHHHHHHHHHHhHHHHHHhcCCCCh-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          313 LMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       313 ~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ..++..+.|-.+...   .+..+++.++..++.        .+| ..-..+|.||..+..+|+|++|+.+....++    
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~----  106 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----  106 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----
Confidence            345666666666654   455566666655443        235 5788999999999999999999999887665    


Q ss_pred             hcCCCCchHHHHHHHHHHH
Q 014710          389 THGTNSPFMKELILKLEEA  407 (420)
Q Consensus       389 ~~G~~h~~~~~~~~~l~~~  407 (420)
                       .-|++.....+...+.+.
T Consensus       107 -~eP~N~QA~~Lk~~Ie~k  124 (134)
T 3o48_A          107 -HERNNKQVGALKSMVEDK  124 (134)
T ss_dssp             -TCTTCHHHHHHHHHHHHH
T ss_pred             -hCCCCHHHHHHHHHHHHH
Confidence             356677677666665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.87  E-value=6.5  Score=31.47  Aligned_cols=83  Identities=14%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHh---hcHHHHHHHHHHhHHHHHHhcCCCCh-HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          312 NLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       312 ~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ...++..+.|-.+...   .+..+++.+++.++..        +| ..-..+|.||..+..+|+|++|+.+.+..+++  
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--  106 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--  106 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--
Confidence            4556666677666665   4556677766665442        33 57778999999999999999999998887763  


Q ss_pred             HhcCCCCchHHHHHHHHHHH
Q 014710          388 ITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       388 ~~~G~~h~~~~~~~~~l~~~  407 (420)
                         .|++....++...+.+.
T Consensus       107 ---eP~n~QA~~Lk~~Ie~~  123 (144)
T 1y8m_A          107 ---ERNNKQVGALKSMVEDK  123 (144)
T ss_dssp             ---CCCCHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHH
Confidence               56777676666655543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=88.81  E-value=2.3  Score=41.20  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=17.3

Q ss_pred             HHHHHHhhHH-H--HhhcChHHHHHHHHHHH
Q 014710          356 GLQYYTCGKL-E--WFLGDTENAIKSMTEAV  383 (420)
Q Consensus       356 ~~~l~~La~~-~--~~~g~~~eA~~~l~~A~  383 (420)
                      ...+++||.+ +  ...+++++|+.+|++|.
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            3455666666 3  34666777777777765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=88.61  E-value=3.2  Score=38.12  Aligned_cols=54  Identities=7%  Similarity=-0.095  Sum_probs=41.6

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  342 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  342 (420)
                      ...|++++|++.+.+.+..     +| +...+.++..+++++...|+.+.|.+..+++..
T Consensus       111 ~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          111 AILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3468999999888776431     12 257788888899999999999999998876543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=88.43  E-value=12  Score=32.66  Aligned_cols=61  Identities=11%  Similarity=0.036  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHhc
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITH  390 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~~  390 (420)
                      .+.|.+.++.++++.+.-+|+.||.+.....+.+..|.+ +++.++|..+.++|.+-....+
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~el  207 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAEL  207 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence            346888899999999889999999999999999988887 7999999888888776544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=88.29  E-value=5.4  Score=40.00  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             hcCCCh-HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhc----------HHHHHHHHHHhHHHHHHhcCCC
Q 014710          283 TSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----------WKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       283 ~~~g~~-~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~----------~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ...|++ ++|++.+.+++.+     .|.++..-..+   +.++...|+          +++|++++.+++..        
T Consensus        39 ~~~~~~~eeal~~~~~~l~~-----nP~~~taW~~R---~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------  102 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGA-----NPDFATLWNCR---REVLQHLETEKSPEESAALVKAELGFLESCLRV--------  102 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH-----CTTCHHHHHHH---HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH-----CchhHHHHHHH---HHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------
Confidence            334444 5778888888764     45665554444   444445555          88888888888754        


Q ss_pred             ChHHHHHHHHhhHHHHhhc--ChHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEI  385 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g--~~~eA~~~l~~A~~i  385 (420)
                      +|.--.+++.-+-++...|  ++++|+.++.+|+++
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            4555556666677777778  668888888888875

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.01  E-value=3.6  Score=29.64  Aligned_cols=59  Identities=20%  Similarity=0.145  Sum_probs=42.7

Q ss_pred             HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHhc
Q 014710          355 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEASY  413 (420)
Q Consensus       355 ~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~~~~~~~~~  413 (420)
                      .|..+.+-|.-.-..|++++|+.+|.+|++.+...  +.+|...-..+..++.+....++.
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~   70 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISY   70 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666678999999999999999988764  567776555567777777554443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.80  E-value=3.8  Score=40.40  Aligned_cols=88  Identities=8%  Similarity=0.026  Sum_probs=65.1

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      ...|++++|.++++.....   -+.|    -..+++.|...|.+.|++++|.+++.++...      +-.|.. .++..|
T Consensus       116 ~~~g~~~~A~~l~~~M~~~---g~~P----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~Pd~-~ty~~L  181 (501)
T 4g26_A          116 VAKDDPEMAFDMVKQMKAF---GIQP----RLRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVPEE-PELAAL  181 (501)
T ss_dssp             HHHTCHHHHHHHHHHHHHT---TCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCCCH-HHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHc---CCCC----ccceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCCH-HHHHHH
Confidence            3458899999998887542   2223    2456788999999999999999998877431      223333 367778


Q ss_pred             hHHHHhhcChHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      -..+...|+.++|..+|++-.+
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHH
Confidence            8888999999999999988543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=87.17  E-value=4.2  Score=29.28  Aligned_cols=57  Identities=16%  Similarity=0.085  Sum_probs=39.9

Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHh
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEAS  412 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l~~~~~~~~  412 (420)
                      |..+..-|.-.-..|++++|..+|.+|++.+...  +.+|...-..+..++.+....++
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE   77 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE   77 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            3344444555568899999999999999988764  55666554456677777655444

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=85.91  E-value=18  Score=32.03  Aligned_cols=77  Identities=13%  Similarity=0.074  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLE  405 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~---~G~~h~~~~~~~~~l~  405 (420)
                      .+.|.+.++.+.++...-+|+.||.+....++.+..|.+ +++.++|..+.++|.+-....   +++++  +++....|.
T Consensus       172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~ees--ykDstlImQ  249 (261)
T 3ubw_A          172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEES--YKDSTLIMQ  249 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHH
Confidence            356788899999999899999999999999999988887 699999988888777654333   44443  555444444


Q ss_pred             HHH
Q 014710          406 EAQ  408 (420)
Q Consensus       406 ~~~  408 (420)
                      -+|
T Consensus       250 LLR  252 (261)
T 3ubw_A          250 LLR  252 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=85.91  E-value=18  Score=32.05  Aligned_cols=59  Identities=19%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+.|.+.++.++++. .-+|+.||.+....++.+..|.+ +++.++|..+.++|.+-....
T Consensus       172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~e  231 (260)
T 2npm_A          172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQ  231 (260)
T ss_dssp             HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            346788889999988 88999999999999999998887 799999998888887755443

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=85.89  E-value=17  Score=31.72  Aligned_cols=60  Identities=12%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHHh
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .+.|.+.++.+.++...-+|+.||.+.....+.+..|.+ +++.++|..+.++|.+-....
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~e  209 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMAD  209 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            456888899999999999999999999999999988875 699999998888887654443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.30  E-value=1.7  Score=42.84  Aligned_cols=63  Identities=17%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .+.+..|+++......+..|..+|.+++.+.        |..|..+++||.++...|+.-+|.-+|.+|+.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            3456678888888888999999999998884        99999999999999999999999999998874

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=84.87  E-value=8.7  Score=35.67  Aligned_cols=54  Identities=22%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      +++++.+++.+.+++|+..|..   -+--+|.-+.+.+++.||+..+.+|-++....
T Consensus       276 ~l~L~~~AI~sa~~yY~n~HvY---PYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y  329 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHIY---PYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY  329 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhccCCcc---chhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence            7899999999999999999864   66678888889999999999999999887653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=84.82  E-value=7.2  Score=30.51  Aligned_cols=41  Identities=17%  Similarity=0.079  Sum_probs=32.5

Q ss_pred             hhhcCCCCh-hHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          303 KKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       303 ~~~l~~~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +.++...++ ..-..++.||..+.++|+|.+|+.++..+|.+
T Consensus        62 e~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           62 EELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344544445 45667888999999999999999999998876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=84.74  E-value=7.5  Score=35.56  Aligned_cols=100  Identities=12%  Similarity=0.073  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCh-HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh--cHHHHHHHHHH
Q 014710          263 EEIKKIASEVNILSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQL  339 (420)
Q Consensus       263 ~~~~~~~~~~~~l~~~a~~~~~~g~~-~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~  339 (420)
                      ++...+...+.++.+       .|.+ ++|++.+.+++.+     .|.|+..-..   -+.++..+|  ++++++++..+
T Consensus        30 ~~y~~~~~~~~a~~~-------~~e~s~~aL~~t~~~L~~-----nP~~~taWn~---R~~~L~~l~~~~~~eeL~~~~~   94 (306)
T 3dra_A           30 EDYKQIMGLLLALMK-------AEEYSERALHITELGINE-----LASHYTIWIY---RFNILKNLPNRNLYDELDWCEE   94 (306)
T ss_dssp             HHHHHHHHHHHHHHH-------TTCCSHHHHHHHHHHHHH-----CTTCHHHHHH---HHHHHHTCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHH-----CcHHHHHHHH---HHHHHHHcccccHHHHHHHHHH
Confidence            344444544444332       3443 5899999888765     4555554444   455566677  99999999999


Q ss_pred             hHHHHHHhcCCCChHHHHHHHHhhHHH----Hhh---cChHHHHHHHHHHHHH
Q 014710          340 TIPVYQRVYPQFHPLLGLQYYTCGKLE----WFL---GDTENAIKSMTEAVEI  385 (420)
Q Consensus       340 ~l~~~~~~~g~~hp~~~~~l~~La~~~----~~~---g~~~eA~~~l~~A~~i  385 (420)
                      +|..--+.|        .+++.-+.++    ...   +++++++.++.+++.+
T Consensus        95 ~L~~nPk~y--------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           95 IALDNEKNY--------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             HHHHCTTCC--------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HHHHCcccH--------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            886532222        2222222332    333   6788888888888763

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.68  E-value=17  Score=33.31  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=32.2

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  346 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  346 (420)
                      .|++-+|-++++.+...+.+-  ..+...++++..-+..+.+.|++..|.+++.-+++++++
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~   85 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDL   85 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence            356666666665555443221  233345555555556666666666666655555555443

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=82.93  E-value=8.1  Score=36.57  Aligned_cols=72  Identities=11%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh-cCCCCc-hHHHHHHHHHHH
Q 014710          333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSP-FMKELILKLEEA  407 (420)
Q Consensus       333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~-~G~~h~-~~~~~~~~l~~~  407 (420)
                      +++++.+++.+.+++|...|   .+-|--+|--+...+++.+|+..+.+|-+++... |+.+.. ++++++....+.
T Consensus       283 ~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel  356 (489)
T 4gq4_A          283 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV  356 (489)
T ss_dssp             HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence            67899999999999999988   3466777888888999999999999999887764 554443 344444433333

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=82.11  E-value=13  Score=35.13  Aligned_cols=54  Identities=11%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             HHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          333 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       333 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      +++++.+++...+++|+..|..   -|.-+|.-+...+++.||+..+.+|-++....
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~HvY---PYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y  351 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDEHIY---PYMYLAGYHCRNRNVREALQAWADTATVIQDY  351 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhccCCcc---ceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence            7889999999999999998864   66778888889999999999999999887654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.64  E-value=9.7  Score=36.07  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-CC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF  351 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~  351 (420)
                      ..+...+......|++.+++..++.++..     +|.+   =.++..|+.++...|+..+|++.|++....+..-+| ..
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFE-----HPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            33344555666789999998888777543     3444   446677889999999999999999999999888888 67


Q ss_pred             ChHHHHHHHHh
Q 014710          352 HPLLGLQYYTC  362 (420)
Q Consensus       352 hp~~~~~l~~L  362 (420)
                      .|.+-..+..+
T Consensus       244 ~~~l~~l~~~i  254 (388)
T 2ff4_A          244 GPTLRALNERI  254 (388)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88777655553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.63  E-value=3.9  Score=42.32  Aligned_cols=92  Identities=13%  Similarity=0.040  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHH--HHHhcC-CCChHHHHHHHHh---------hH-HHHhhcChHHHHHHHHH
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPV--YQRVYP-QFHPLLGLQYYTC---------GK-LEWFLGDTENAIKSMTE  381 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--~~~~~g-~~hp~~~~~l~~L---------a~-~~~~~g~~~eA~~~l~~  381 (420)
                      ..+..|++++.+.|+++.|.+.+.++-+.  +..+|- ...+.....+-++         |. +++.+|++++|+++|.+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            46688999999999999999998876332  222221 2222222222222         22 45557999999888764


Q ss_pred             ------HHHHHHHhcCCCCchHHHHHHHHHHH
Q 014710          382 ------AVEILRITHGTNSPFMKELILKLEEA  407 (420)
Q Consensus       382 ------A~~i~~~~~G~~h~~~~~~~~~l~~~  407 (420)
                            |+.+.+ .+|+.+..+.+++.++++-
T Consensus       762 ~~~~~~A~~lA~-~~~~~~~~i~~~~~~~~~~  792 (814)
T 3mkq_A          762 SQRFSEAAFLGS-TYGLGDNEVNDIVTKWKEN  792 (814)
T ss_dssp             TTCHHHHHHHHH-HTTCCHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHH-HhCCChHHHHHHHHHHHHH
Confidence                  555444 4777764466666666544

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=81.02  E-value=14  Score=32.00  Aligned_cols=63  Identities=10%  Similarity=-0.061  Sum_probs=53.4

Q ss_pred             hcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHH
Q 014710          283 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQ  345 (420)
Q Consensus       283 ~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~  345 (420)
                      +..|+.+.+...|+.+..+..+-+.|.||..+.+..+.+..|.. +++.++|..+++++.++.+
T Consensus       136 ~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~  199 (227)
T 2o8p_A          136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE  199 (227)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            34566788999999999998878999999999988888877776 5899999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	3e-11
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	1e-10
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	1e-10

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 3e-11
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          RC  C A +  K+CS CQ  WYC   CQ   W+ H   C
Sbjct: 10 RCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   + + +C+ C  V YC + CQ+ DWK H+  C
Sbjct: 2  CVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 1e-10
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           S   C  C   +  + CS C    YCGS CQ  DW+ H   C
Sbjct: 6  DSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHIC 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.1
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.08
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	98.99
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	98.94
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	98.92
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.88
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.85
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.83
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.8
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.5
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.48
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.42
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.39
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.37
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.34
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.23
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	98.21
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.94
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.08
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.75
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.76
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	93.58
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.44
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.33
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.53
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.05
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.69
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.32
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	90.96
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	90.69
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	89.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	87.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	84.62
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	81.82
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	80.06

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.10  E-value=2.4e-09  Score=88.22  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=110.7

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC----CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhc
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP----FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  348 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~----~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  348 (420)
                      ...+.++...+..|++++|+..|++++.+....-..    .++....++.+++.+|..+|+|++|+..+++++.++.+..
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            334556777788899999999999999987553211    1233456789999999999999999999999999988764


Q ss_pred             ---CCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          349 ---PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       349 ---g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                         +..++..+..++++|.++..+|++++|+..|++|+++.....| +.+....++..+++..+.+
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHc
Confidence               3557788889999999999999999999999999999987655 5566677777776665544

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.08  E-value=2.8e-11  Score=109.04  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHhhhcccccccCCCcccccchhhhccccCCCCcCCceeEEe-----------CCEEEEEEecCCCCCC
Q 014710          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE-----------GRLAVVRAVQHVPKGA  215 (420)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~glyp~~s~~NHSC~PN~~~~f~-----------~~~~~vra~r~I~~Ge  215 (420)
                      .++.+....++..+.+++|.+.+    ..|.+|||.++|+||||.||+.+.|+           ++.++|||+|+|++||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~----~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GE  232 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  232 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC-------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTS
T ss_pred             ccCHHHHHHHHHHhhcccccccc----cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCC
Confidence            45677888888899999997743    46889999999999999999998874           2468999999999999


Q ss_pred             ccC--CChH-hHHHHh--cCcccc
Q 014710          216 EGQ--FDDI-QESAIL--EGYRCK  234 (420)
Q Consensus       216 e~~--~~~~-~~~~l~--~~~~C~  234 (420)
                      ||+  |... -...|+  .||.+.
T Consensus       233 EI~isYG~~~~n~~ll~~yGFv~~  256 (261)
T d2h2ja2         233 QVYIQYDLNKSNAELALDYGFIEP  256 (261)
T ss_dssp             BCEECSCSSCCHHHHHHHSSCCCS
T ss_pred             EEEEecCCCCCHHHHHHhCCCCCC
Confidence            975  6421 223333  477653

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6e-11  Score=71.99  Aligned_cols=38  Identities=37%  Similarity=0.948  Sum_probs=34.4

Q ss_pred             cCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhc
Q 014710           29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (420)
Q Consensus        29 ~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (420)
                      .|..|.+. .+.+|++|+.++|||++||+.+|+.|+.+|
T Consensus         1 sC~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           1 SCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             CccccCcc-ccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            38889876 578999999999999999999999999987

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-10  Score=73.23  Aligned_cols=42  Identities=38%  Similarity=0.844  Sum_probs=37.7

Q ss_pred             CCCccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhc
Q 014710           25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (420)
Q Consensus        25 ~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (420)
                      .....|..|.+. ....|++|+.++|||++||..+|+.|+.+|
T Consensus         6 ~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CCSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             cCCCcCCCCCcc-ccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            457889999975 567899999999999999999999999988

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=73.19  Aligned_cols=40  Identities=43%  Similarity=0.987  Sum_probs=36.1

Q ss_pred             CccCccccCCCCCcCCCCCCcccccChhhchhhhhhhHhhc
Q 014710           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (420)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (420)
                      ...|.+|.+. ....|++|+.++|||++||..+|+.|+.+|
T Consensus         8 ~~~C~~Cg~~-~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCC-CCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCcCcCCCCh-hhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            4579999887 567999999999999999999999999887

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.8e-08  Score=76.76  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      -+....++..|+|++|++.|.+++.+     .|.+   ..++.+++.+|...|+|++|++.+.+++.+-.. .+..++.+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~   78 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQI   78 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            34556678889999999999999875     4554   457889999999999999999999999987654 45678899


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +..+..+|.++..++++++|+.++++++..
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999863

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.1e-08  Score=78.04  Aligned_cols=112  Identities=23%  Similarity=0.228  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      ++.+.+.+..++..|++++|+..|.+++..        +|.-..++..++.++...|++++|+..+.+++.+-       
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------   67 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------   67 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHhc-------
Confidence            455667788888999999999999999875        34445678889999999999999999999998763       


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                       |.-...++.+|.++..+|++++|+..|++|+.     .-|++|.+...+..+
T Consensus        68 -p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          68 -PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK-----HEANNPQLKEGLQNM  114 (117)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTCHHHHHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHH
Confidence             45556899999999999999999999999996     457777665544433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.88  E-value=5.9e-08  Score=79.29  Aligned_cols=120  Identities=11%  Similarity=0.056  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC--------hhHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 014710          269 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--------VNLMQTREKLIKILMELEDWKEALAYCQLT  340 (420)
Q Consensus       269 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h--------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  340 (420)
                      .+++..+.+++..++.+|++.+|+..|++++......-....        ...+.++.+++.+|..+|+|++|+.+++++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            345556667788889999999999999999876543222222        223467788999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          341 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       341 l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                      |.+        +|.-...++.+|.++..+|++++|+..|++|+++     .|+++.+...+
T Consensus        94 l~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~n~~~~~~l  141 (153)
T d2fbna1          94 LKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSY  141 (153)
T ss_dssp             HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred             ccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            865        4666789999999999999999999999999987     47777665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8e-08  Score=79.98  Aligned_cols=124  Identities=12%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCC-------ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhH
Q 014710          269 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-------SVNLMQTREKLIKILMELEDWKEALAYCQLTI  341 (420)
Q Consensus       269 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~-------h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  341 (420)
                      ++.+..+.+.+..++.+|++++|+..|++++..........       +.....++.+++.+|...|+|++|+.++.++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            33456666778888899999999999999988754322222       23445677889999999999999999999998


Q ss_pred             HHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 014710          342 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  405 (420)
Q Consensus       342 ~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~  405 (420)
                      .+        +|.-...++.+|.++..+|++++|+..|++|+.+     .|+++.+...+..+.
T Consensus        90 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          90 EL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHH
T ss_pred             hc--------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence            77        4556778999999999999999999999999885     678887766554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=4.7e-08  Score=82.94  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=86.1

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      +.+...+..++..|++++|+..|++++.+     .|.+   ..++.+++.+|...|++++|+.++++++.+        .
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            44556677788899999999999999875     3444   567788999999999999999999999865        4


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      |.....++++|.++..+|++++|+..|++|+.+--..
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            6667789999999999999999999999999987544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.6e-08  Score=79.38  Aligned_cols=111  Identities=13%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  349 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  349 (420)
                      +..+.+..++..++..|++++|+..|++++..        +|.-..++.+++.++...|++++|+..+++++.+      
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence            44566677788889999999999999999875        3445667789999999999999999999999887      


Q ss_pred             CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 014710          350 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  401 (420)
Q Consensus       350 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~  401 (420)
                        .|.....++.+|.++..+|++++|+..+++|+.+     .|+++.+...+
T Consensus        74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~~~~~l  118 (159)
T d1a17a_          74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKY  118 (159)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred             --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHH
Confidence              4666778999999999999999999999999875     56777665444

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=98.80  E-value=1e-09  Score=86.16  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=36.4

Q ss_pred             hhhccccCCCCcCCceeEEe--CCEEEEEEecCCCCCCccCCCh
Q 014710          180 YPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       180 yp~~s~~NHSC~PN~~~~f~--~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++++||||.|||...++  +..+.++|+|+|++||||+++|
T Consensus        62 ~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dY  105 (119)
T d2g46a1          62 LGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY  105 (119)
T ss_dssp             CSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCC
T ss_pred             cCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEec
Confidence            35678999999999999886  4579999999999999998765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.76  E-value=1.9e-07  Score=77.45  Aligned_cols=122  Identities=15%  Similarity=0.209  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCC-------CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHH
Q 014710          270 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP-------FSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  342 (420)
Q Consensus       270 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~-------~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  342 (420)
                      +.++.+.+.+..++..|++.+|+..|++++.........       .+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            446666778888999999999999999998865433222       2344566788899999999999999999999987


Q ss_pred             HHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          343 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       343 ~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      +        +|.-...++.+|.++..+|++++|+..|.+|+.+     .|+++.+...+..+
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARLQIFMC  141 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            6        5666789999999999999999999999999864     57777665544333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=1.3e-07  Score=78.34  Aligned_cols=126  Identities=14%  Similarity=0.166  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhh--------cCCCChhHHHHHHHHHHHHHHhhcHHHHHHHH
Q 014710          266 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAYC  337 (420)
Q Consensus       266 ~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--------l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~  337 (420)
                      .......+.+...+..+...|++.+|++.|.+++......        ....++....++.+++.++..+|+|++|+..+
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            3333334444556777788899999999999987653211        11235667788899999999999999999999


Q ss_pred             HHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 014710          338 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  404 (420)
Q Consensus       338 ~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l  404 (420)
                      .++|.+        +|.-+..++.+|.++..+|++++|+..|++|+++     .|+++.+...+..+
T Consensus       101 ~~al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~~l~~~  154 (169)
T d1ihga1         101 LEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred             hhhhhh--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            999865        4666778999999999999999999999999985     56676655444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-07  Score=73.26  Aligned_cols=108  Identities=12%  Similarity=0.062  Sum_probs=80.6

Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH---hhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          280 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       280 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ......+++++|.+.|++++..        +|.-..++.++|.++..   .+++++|+.++++++..      ...|...
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~~   72 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQR   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchHH
Confidence            3444556788999999999874        33345577788888875   46677777776665432      2236667


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  406 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~  406 (420)
                      ..+++||.++..+|++++|+.+|++|+++     .|+|+....++..+.+
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHH
Confidence            79999999999999999999999999986     5888877766655544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.50  E-value=4.5e-07  Score=69.65  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=78.3

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+...+.+|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++.+        +|.-.
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~   84 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDI   84 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-----cccc---chhhhhhhhhhhhhhhHHHhhccccccccc--------ccccc
Confidence            3445567789999999999999875     3444   577788999999999999999999999887        57777


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAV  383 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~  383 (420)
                      ..++.||.++..+|++++|++.+++.+
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            899999999999999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.48  E-value=1.8e-06  Score=72.13  Aligned_cols=122  Identities=7%  Similarity=-0.004  Sum_probs=97.8

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCC--------------ChhHHHHHHHHHHHHHHhhcHHHHHHHH
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALAYC  337 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~--------------h~~~~~~~~~L~~~~~~~g~~~~A~~~~  337 (420)
                      ++.....+......|++++|++.|.+++.+.+.-+-+.              ....+.+...++.++...|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            44555566667788999999999999998765322111              1234567788999999999999999999


Q ss_pred             HHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chHHHHH
Q 014710          338 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELI  401 (420)
Q Consensus       338 ~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~~~~~  401 (420)
                      ++++..        +|.--..+..|+.++...|++.+|+..|+++.+.+...+|-+- +.+..+.
T Consensus        91 ~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~  147 (179)
T d2ff4a2          91 EALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  147 (179)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            999886        5777889999999999999999999999999999999999874 3444443

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.42  E-value=4e-08  Score=88.80  Aligned_cols=39  Identities=36%  Similarity=0.567  Sum_probs=32.5

Q ss_pred             ccccCCCCcCCceeEEe--C------CEEEEEEecCCCCCCccCCCh
Q 014710          183 ISIINHSCLPNAVLVFE--G------RLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~f~--~------~~~~vra~r~I~~Gee~~~~~  221 (420)
                      +.++||||.||+.+...  +      .++.+.|+|+|++||||+++|
T Consensus       213 aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  259 (284)
T d1ml9a_         213 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDY  259 (284)
T ss_dssp             GGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECT
T ss_pred             hheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEec
Confidence            56889999999987632  1      378999999999999999665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.2e-06  Score=63.54  Aligned_cols=88  Identities=9%  Similarity=-0.062  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC
Q 014710          315 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  394 (420)
Q Consensus       315 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  394 (420)
                      +-...++.++.+.|+|.+|+.++++++.+.... +...+..+..+.+||.++..+|++++|+.++++|+++     -|+|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~   79 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCC
Confidence            445689999999999999999999999877543 4556788999999999999999999999999999986     5788


Q ss_pred             chHHHHHHHHHHHHHHH
Q 014710          395 PFMKELILKLEEAQAEA  411 (420)
Q Consensus       395 ~~~~~~~~~l~~~~~~~  411 (420)
                      +..   ..+++..+..|
T Consensus        80 ~~a---~~Nl~~~~~~l   93 (95)
T d1tjca_          80 QRA---NGNLKYFEYIM   93 (95)
T ss_dssp             HHH---HHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHh
Confidence            754   45555555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=6.2e-06  Score=74.16  Aligned_cols=127  Identities=13%  Similarity=-0.011  Sum_probs=103.2

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +..+...++|++|++.|+++..+..+.  .+++....++.+++.+|...|++++|++++++++.++...  +.....+..
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~  119 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHH
Confidence            444567789999999999999987653  4556788999999999999999999999999999998775  556677889


Q ss_pred             HHHhhHHHHh-hcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  411 (420)
Q Consensus       359 l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~~  411 (420)
                      +.++|.++.. .|++++|+.+|++|+++....  .+.+....+..+++.+....
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~  171 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALD  171 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHc
Confidence            9999999864 699999999999999998765  23345566677777764433

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.8e-08  Score=80.39  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             hccccCCCCcCCceeEE--e---CCEEEEEEecCCCCCCccCCCh
Q 014710          182 VISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       182 ~~s~~NHSC~PN~~~~f--~---~~~~~vra~r~I~~Gee~~~~~  221 (420)
                      .+.++||||.||+....  .   +..+.++|+|+|++||||+++|
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dY  142 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY  142 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECC
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEe
Confidence            46689999999998642  2   2467899999999999998664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=73.50  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=79.6

Q ss_pred             HHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCC
Q 014710          273 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  352 (420)
Q Consensus       273 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  352 (420)
                      -.++.++......|+|++|++.|.++        .+.++   .++.+++.+|..+|++++|++.+++++.+        .
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~~---~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------d   66 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV--------QDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINR--------D   66 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc--------CCCCH---HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------h
Confidence            35566777778889999998877543        33443   46789999999999999999999999876        4


Q ss_pred             hHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          353 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       353 p~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      |..+..++++|.++..+|++++|+..+++|+..+
T Consensus        67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            6778899999999999999999999999999754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=3e-06  Score=74.22  Aligned_cols=98  Identities=11%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  351 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  351 (420)
                      .......+..+...|++++|+..|++++.+     .|++   ..++..++.++...|++++|+..+++++.+        
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------  100 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------  100 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHH--------
Confidence            445566677788899999999999999875     4555   456788999999999999999999999876        


Q ss_pred             ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          352 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       352 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      +|..+..++++|.++..+|++++|+..+++|+++
T Consensus       101 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3455568999999999999999999999999875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.4e-05  Score=72.17  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=104.1

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCC-hhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      .|.....+|++++|+..+++++...    +.++ +..+.++..++.++...|++++|+.++++++......  ++++..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~   91 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYAL   91 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHH
Confidence            3555678899999999999997643    2222 3355678899999999999999999999999887654  6778889


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~  409 (420)
                      ..+..++.++...|++.+|...+.+|+.+.....++.++........++.+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  144 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  144 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888877666666655533

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.2e-05  Score=72.80  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=85.7

Q ss_pred             HhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHH
Q 014710          279 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  358 (420)
Q Consensus       279 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  358 (420)
                      +......|++++|+..+++++..     .|.+   ..++..++.++...|++++|++++++++..        .|.-+..
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a  242 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRS  242 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHHHHHhhhhccccccccc-----cccc---ccchhhhhhcccccccchhHHHHHHHHHHH--------hhccHHH
Confidence            44456679999999999998764     3444   457778999999999999999999999875        3445668


Q ss_pred             HHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHH
Q 014710          359 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS---PFMKELILKLEEAQA  409 (420)
Q Consensus       359 l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h---~~~~~~~~~l~~~~~  409 (420)
                      ++.||.++..+|++++|+.+|++|+++.....++..   .....+...+..+..
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~  296 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  296 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776554332   233334444444433

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=2.8e-07  Score=82.13  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             ccccCCCCcCCceeEE--eC------CEEEEEEecCCCCCCccCCCh
Q 014710          183 ISIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEGQFDD  221 (420)
Q Consensus       183 ~s~~NHSC~PN~~~~f--~~------~~~~vra~r~I~~Gee~~~~~  221 (420)
                      +-++||||.||+.+..  .+      .++.+.|+|+|++||||+++|
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DY  259 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY  259 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECC
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEec
Confidence            4578999999998753  22      268999999999999999664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.4e-05  Score=73.05  Aligned_cols=109  Identities=18%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             HHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHH
Q 014710          278 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  357 (420)
Q Consensus       278 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  357 (420)
                      .+..+...|++++|++.++.+...     .|.   .......++.++...|++++|++++++++.+        +|..+.
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~  340 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRL-----CPT---HADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA  340 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhcc-----CCc---cchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            344445566777777777666443     222   3445567778888888999998888887754        466677


Q ss_pred             HHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 014710          358 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  410 (420)
Q Consensus       358 ~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~l~~~~~~  410 (420)
                      .++.||.++..+|++++|+..|++|+++     -|+++   +....|+.+..+
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~---~a~~~lg~~~~~  385 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA---DAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH
Confidence            8999999999999999999999999865     34554   445566655444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=3.5e-05  Score=69.04  Aligned_cols=111  Identities=16%  Similarity=0.111  Sum_probs=90.7

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHHHhcCCCCh
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHP  353 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~~~g~~hp  353 (420)
                      +...+..+...|++++|++.+++++.+....  ........+...++.++.. .|++++|++++++++.++...  ...+
T Consensus        80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~  155 (290)
T d1qqea_          80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVA  155 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--Cchh
Confidence            3344555667899999999999999887653  3455567788889988855 699999999999999988764  4456


Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ..+..+.++|.++..+|++++|+.+++++..+....
T Consensus       156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            788899999999999999999999999998876543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.5e-05  Score=67.13  Aligned_cols=114  Identities=10%  Similarity=-0.018  Sum_probs=86.6

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHH-------h
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-------V  347 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~-------~  347 (420)
                      ....+......|++++|++.|++++++        ++....++.+++.++..+|++++|+..+++++...+.       .
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            445566677889999999999999875        3344667888999999999999999999999864321       1


Q ss_pred             cC-CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 014710          348 YP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  399 (420)
Q Consensus       348 ~g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~  399 (420)
                      .| ...+.-+..++++|.++..+|++++|+..+.+|+.+-..   ++|..+..
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~---~~~~~~~~  160 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---PRHSKIDK  160 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS---GGGGHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cchHHHHH
Confidence            12 223344678899999999999999999999998876432   34544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=72.83  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      +.|...+..|++++|++.++++++.     .|.++   .++..++.++...|++++|+.++++++..        +|..+
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~   67 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLA   67 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3455667789999999999999764     45554   46678999999999999999999998875        45556


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..++.||.++..+|++++|+..+.++...
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~   96 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccc
Confidence            78999999999999999999999988764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.6e-05  Score=59.36  Aligned_cols=87  Identities=11%  Similarity=0.068  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      ...++..+...|+|++|+.++.+++.+        +|.-...++++|.++..+|++++|+..+.+|+.+-... ...++.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~   77 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HHHHHH
Confidence            457899999999999999999999986        45556789999999999999999999999999986664 444555


Q ss_pred             HHHHHHHHHHHHHHHh
Q 014710          397 MKELILKLEEAQAEAS  412 (420)
Q Consensus       397 ~~~~~~~l~~~~~~~~  412 (420)
                      ...++..+..+...+.
T Consensus        78 ~a~~~~~lg~~~~~~~   93 (128)
T d1elra_          78 IAKAYARIGNSYFKEE   93 (128)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            5666666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.1e-05  Score=69.03  Aligned_cols=95  Identities=12%  Similarity=-0.017  Sum_probs=79.7

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ++++...+..|++++|+..|+++++.     .|.+   ..++..++.++...|++++|+.++.+++.+        +|.-
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~   86 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKH---MEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDN   86 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cccc
Confidence            34566677889999999999999763     3444   567888999999999999999999999876        3455


Q ss_pred             HHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ...+..+|.++...|++++|...+.+++.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  117 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYT  117 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccccccccccchhhHHHhc
Confidence            6789999999999999999999999998754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.82  E-value=5.4e-05  Score=61.11  Aligned_cols=96  Identities=11%  Similarity=0.071  Sum_probs=71.7

Q ss_pred             HHHHHHH--HHHHHHhhcHHHHHHHHHHhHHHHHHhcC----CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHH
Q 014710          314 MQTREKL--IKILMELEDWKEALAYCQLTIPVYQRVYP----QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       314 ~~~~~~L--~~~~~~~g~~~~A~~~~~~~l~~~~~~~g----~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~  387 (420)
                      ..++..+  +..+...|+|++|++.+++++.+......    ..++..+..+.++|.++..+|++++|...+++|+.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3444444  56677789999999999999998876543    22456788999999999999999999999999999988


Q ss_pred             HhcCC---CCchHHHHHHHHHHHHH
Q 014710          388 ITHGT---NSPFMKELILKLEEAQA  409 (420)
Q Consensus       388 ~~~G~---~h~~~~~~~~~l~~~~~  409 (420)
                      .....   .++....++..++.+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~  111 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALD  111 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHH
Confidence            76432   23444444555555533

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00026  Score=63.37  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=97.9

Q ss_pred             HHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHH
Q 014710          277 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  356 (420)
Q Consensus       277 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  356 (420)
                      ..+..+...|++++|+..+++++.....  .+..+....+...++..+...|++..|...+.+++.+.....+..++..+
T Consensus        56 ~lg~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~  133 (366)
T d1hz4a_          56 VLGEVLHCKGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  133 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence            3455566789999999999999887654  35667778888999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          357 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       357 ~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      ..+..+|.++...|++++|...+.++.......
T Consensus       134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.0002  Score=52.40  Aligned_cols=83  Identities=7%  Similarity=-0.066  Sum_probs=64.2

Q ss_pred             HHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          276 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       276 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +..+.....+|++.+|+..+++++.+.... ....+....++.+|+.++...|++++|+++++++|.+-     |+|+  
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-----P~~~--   80 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEHQ--   80 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH--
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-----cCCH--
Confidence            344556678899999999999998876442 33455678999999999999999999999999998873     5555  


Q ss_pred             HHHHHHhhHHHH
Q 014710          356 GLQYYTCGKLEW  367 (420)
Q Consensus       356 ~~~l~~La~~~~  367 (420)
                       .++.+|+.+..
T Consensus        81 -~a~~Nl~~~~~   91 (95)
T d1tjca_          81 -RANGNLKYFEY   91 (95)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             -HHHHHHHHHHH
Confidence             45666655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00016  Score=62.60  Aligned_cols=75  Identities=11%  Similarity=0.006  Sum_probs=63.6

Q ss_pred             CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          309 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       309 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ..+....++..++.+|...|++++|+..+++++.+        +|.-...++.+|.++..+|++++|+..+++|+++   
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---  100 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---  100 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH---
Confidence            34556778899999999999999999999999876        3445667999999999999999999999999986   


Q ss_pred             hcCCCCch
Q 014710          389 THGTNSPF  396 (420)
Q Consensus       389 ~~G~~h~~  396 (420)
                        .|+++.
T Consensus       101 --~p~~~~  106 (259)
T d1xnfa_         101 --DPTYNY  106 (259)
T ss_dssp             --CTTCTH
T ss_pred             --Hhhhhh
Confidence              455554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00017  Score=59.95  Aligned_cols=62  Identities=19%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .+...+..+...|+|++|+.++.+++.+        .|..+..++++|.+|..+|++++|+..+.+|+.+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            3456788999999999999999999887        4666789999999999999999999999999765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=0.00057  Score=54.16  Aligned_cols=103  Identities=11%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh----------hcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----------EDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      +.|++|+..+++++.+     .|+++.   ++.+++.++...          +.+++|+..+++++.+        .|.-
T Consensus        11 ~~fe~A~~~~e~al~~-----~P~~~~---~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~P~~   74 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKS-----NPLDAD---NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             ccHHHHHHHHHHHHhh-----CCcchH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------cchh
Confidence            3567888888888764     466654   444566665543          4556777777777655        4666


Q ss_pred             HHHHHHhhHHHHhhcC----hHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Q 014710          356 GLQYYTCGKLEWFLGD----TENAIKSMTEAVEILRIT--HGTNSPFMKELILKL  404 (420)
Q Consensus       356 ~~~l~~La~~~~~~g~----~~eA~~~l~~A~~i~~~~--~G~~h~~~~~~~~~l  404 (420)
                      ...+++||.++..+|+    ..++...+.+|.+.++..  .-|+++.+...+...
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            7788999999987653    334444444444444433  457777776555433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.30  E-value=0.001  Score=50.01  Aligned_cols=68  Identities=12%  Similarity=-0.010  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      ...++..+.+.|++++|+..+++++..        .|.-...++.||.++...|++++|+..+++|+++     .|+++.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   85 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIA   85 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc-----cccccc
Confidence            456788899999999999999999876        3555789999999999999999999999999886     455554


Q ss_pred             H
Q 014710          397 M  397 (420)
Q Consensus       397 ~  397 (420)
                      +
T Consensus        86 a   86 (112)
T d1hxia_          86 V   86 (112)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0011  Score=53.16  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      +...+..+...|+|++|+.++++++.+        +|.-...++++|.++..+|++++|+..+.+|+++     .|+++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~p~~~~   79 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIK   79 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-----cccchH
Confidence            345677889999999999999999876        5777889999999999999999999999999876     355553


Q ss_pred             H
Q 014710          397 M  397 (420)
Q Consensus       397 ~  397 (420)
                      .
T Consensus        80 a   80 (159)
T d1a17a_          80 G   80 (159)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0028  Score=56.94  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             cCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh-cHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHh
Q 014710          284 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  362 (420)
Q Consensus       284 ~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  362 (420)
                      .++.+++|++.+++++++     .|.|   ..++...+.++...| ++++|+.++.+++.+        +|.-...++.+
T Consensus        55 ~~e~~~~Al~~~~~ai~l-----nP~~---~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~  118 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIEL-----NAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHR  118 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             hCCchHHHHHHHHHHHHH-----CCCC---hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHH
Confidence            356678888888888764     2333   455566677777766 478888888877766        46667778888


Q ss_pred             hHHHHhhcChHHHHHHHHHHHHH
Q 014710          363 GKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       363 a~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      |.++..+|++++|+.++.+|+++
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhh
Confidence            88888888888888888888765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.08  E-value=0.0016  Score=52.64  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCC-------CChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      .......|..+...|+|.+|+..+.+++......++.       ..+.....+.++|.++..+|++++|+.++.+|+.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            3445678889999999999999999999887655543       34456777889999999999999999999999976

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0012  Score=49.86  Aligned_cols=68  Identities=13%  Similarity=0.060  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCch
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  396 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~  396 (420)
                      +..-+..+...|+|++|+.++.+++..        .|.-...++.+|.++..+|++++|+..+.+|+.+     .|+++.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   72 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh-----ccchhh
Confidence            345688899999999999999999875        4666789999999999999999999999999976     355554


Q ss_pred             H
Q 014710          397 M  397 (420)
Q Consensus       397 ~  397 (420)
                      .
T Consensus        73 ~   73 (117)
T d1elwa_          73 G   73 (117)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0024  Score=51.77  Aligned_cols=78  Identities=14%  Similarity=0.046  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCC-------ChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          314 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       314 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                      ...+...|..+...|+|++|+..+++++.......+..       ++.....+.++|.++..+|++++|+.++.+|+.+ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            34456778899999999999999999998765444333       3455667788999999999999999999999987 


Q ss_pred             HHhcCCCCch
Q 014710          387 RITHGTNSPF  396 (420)
Q Consensus       387 ~~~~G~~h~~  396 (420)
                          .|+++.
T Consensus        92 ----~p~~~~   97 (170)
T d1p5qa1          92 ----DSNNEK   97 (170)
T ss_dssp             ----CTTCHH
T ss_pred             ----cccchh
Confidence                455543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00078  Score=64.90  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=62.0

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .|+.++|+..++.++..          ...+++..|+.++...|+|++|+.++++++.+        .|..|..+++||.
T Consensus       133 ~~~~~~A~~~~~~al~~----------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~  194 (497)
T d1ya0a1         133 QTHTSAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAI  194 (497)
T ss_dssp             ----------CCHHHHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHH
Confidence            44555555555544432          12356778999999999999999999999988        5899999999999


Q ss_pred             HHHhhcChHHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++...|+..+|+.+|.||+.+
T Consensus       195 ~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHcCCHHHHHHHHHHHHhC
Confidence            999999999999999999753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.79  E-value=0.0037  Score=50.40  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC--------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYP--------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g--------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      ....+..+...|+|.+|+..+.+++........        ..+|.....+.++|.++..+|++++|+..+.+|+++   
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  106 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  106 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence            345677788899999999999999886554332        236888899999999999999999999999999864   


Q ss_pred             hcCCCCch
Q 014710          389 THGTNSPF  396 (420)
Q Consensus       389 ~~G~~h~~  396 (420)
                        .|+++.
T Consensus       107 --~p~~~~  112 (169)
T d1ihga1         107 --DPSNTK  112 (169)
T ss_dssp             --CTTCHH
T ss_pred             --hhhhhh
Confidence              455553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.72  E-value=0.0049  Score=48.82  Aligned_cols=85  Identities=12%  Similarity=0.015  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCCh--------HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHH
Q 014710          317 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP--------LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       317 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp--------~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~  388 (420)
                      +...+..+...|+|.+|+..+++++..+.........        .....+.++|.++..+|++++|+.++++|+.+   
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~---   96 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---   96 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc---
Confidence            3446667888899999999999998765444333222        23457789999999999999999999999865   


Q ss_pred             hcCCCCchHHHHHHHHHHHHH
Q 014710          389 THGTNSPFMKELILKLEEAQA  409 (420)
Q Consensus       389 ~~G~~h~~~~~~~~~l~~~~~  409 (420)
                        .|+++   ..+..++.+..
T Consensus        97 --~p~~~---ka~~~~g~~~~  112 (153)
T d2fbna1          97 --DKNNV---KALYKLGVANM  112 (153)
T ss_dssp             --STTCH---HHHHHHHHHHH
T ss_pred             --cchhh---hhhHHhHHHHH
Confidence              34443   44445554433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0035  Score=56.21  Aligned_cols=83  Identities=8%  Similarity=-0.062  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  366 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~  366 (420)
                      ++++|+..+++++..        +|.-..++..++.++..+|++++|++++.+++..        +|.-...++++|.++
T Consensus        93 ~~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          93 DLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVI  156 (315)
T ss_dssp             CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHH
Confidence            477888888877664        3444566777788888888888888888888765        455567788888888


Q ss_pred             HhhcChHHHHHHHHHHHHH
Q 014710          367 WFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       367 ~~~g~~~eA~~~l~~A~~i  385 (420)
                      ..+|++++|+..+.+|+.+
T Consensus       157 ~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         157 QEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            8888888888888888775

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.56  E-value=0.0098  Score=51.80  Aligned_cols=98  Identities=15%  Similarity=0.009  Sum_probs=69.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHH----------H-----
Q 014710          281 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY----------Q-----  345 (420)
Q Consensus       281 ~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~----------~-----  345 (420)
                      ..+.+|++++|+..++++++.        +|.-...+..|+.++...|+|++|++.+++++...          .     
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            456789999999999999764        45556678889999999999999999888877641          0     


Q ss_pred             -----Hhc-C------CCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHH
Q 014710          346 -----RVY-P------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       346 -----~~~-g------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~  386 (420)
                           .+. +      ..+|.-...+...+.++...|+.++|...+.++.+..
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                 000 1      1234444455555666667788888888877776653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.021  Score=43.11  Aligned_cols=81  Identities=15%  Similarity=0.004  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHh---hcHHHHHHHHHHhHHHHHHhcCCCChH-HHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHh
Q 014710          314 MQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  389 (420)
Q Consensus       314 ~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~  389 (420)
                      .++..+.|-.+...   .++++++.+++.++..        +|. ....+|.||..+..+|++++|+.++++++++    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            46666777666643   5677788777665432        343 4579999999999999999999999999875    


Q ss_pred             cCCCCchHHHHHHHHHHH
Q 014710          390 HGTNSPFMKELILKLEEA  407 (420)
Q Consensus       390 ~G~~h~~~~~~~~~l~~~  407 (420)
                       .|+|.....+...+.+.
T Consensus       103 -eP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1         103 -ERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             -CTTCHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHH
Confidence             68888888777766654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.75  E-value=0.045  Score=44.32  Aligned_cols=82  Identities=15%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcC-C
Q 014710          272 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-Q  350 (420)
Q Consensus       272 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~  350 (420)
                      +......+......|++++|+..+++++..        +|.--.++..++.++...|++.+|++.++++...+..-+| .
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            455556677778899999999999999874        3444567788999999999999999999999999888888 4


Q ss_pred             CChHHHHHHHH
Q 014710          351 FHPLLGLQYYT  361 (420)
Q Consensus       351 ~hp~~~~~l~~  361 (420)
                      ..|.+...+..
T Consensus       139 P~~~l~~l~~~  149 (179)
T d2ff4a2         139 PGPTLRALNER  149 (179)
T ss_dssp             CCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            46766544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.093  Score=39.34  Aligned_cols=58  Identities=12%  Similarity=0.003  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcCh---HHHHHHHHHHH
Q 014710          318 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT---ENAIKSMTEAV  383 (420)
Q Consensus       318 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~---~eA~~~l~~A~  383 (420)
                      .+|+..+...+++++|.+.++++|..        .|....+++++|.++...++.   ++|+.+|++++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l   63 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL   63 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            46778888999999999999999876        355566889999999875544   45666666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.76  E-value=0.085  Score=45.53  Aligned_cols=67  Identities=13%  Similarity=0.021  Sum_probs=54.3

Q ss_pred             HHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 014710          324 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  403 (420)
Q Consensus       324 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h~~~~~~~~~  403 (420)
                      ....|++++|++.+++.+..        +|.-+..+..||+++...|++++|+..|++++++     .|+++.....+..
T Consensus         6 aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~l~~   72 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRH   72 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHH
Confidence            44569999999999998765        6888889999999999999999999999999875     4555555444433

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=93.58  E-value=0.43  Score=39.48  Aligned_cols=97  Identities=9%  Similarity=-0.041  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh
Q 014710          294 TYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  368 (420)
Q Consensus       294 ~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~  368 (420)
                      .+..++......+-|+.-..+-.+..-|+.|..     .|.-++|...++++..+...-+++.||.+.....+.+..+.+
T Consensus        98 ~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yE  177 (220)
T d2o8pa1          98 FLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSE  177 (220)
T ss_dssp             HHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence            344444444455544322222223333443332     367788999999999999999999999999999999998886


Q ss_pred             -hcChHHHHHHHHHHHHHHHHhc
Q 014710          369 -LGDTENAIKSMTEAVEILRITH  390 (420)
Q Consensus       369 -~g~~~eA~~~l~~A~~i~~~~~  390 (420)
                       +++.++|..+.++|.+.+....
T Consensus       178 i~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         178 KYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHH
Confidence             6999999999999966555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.44  E-value=0.15  Score=45.02  Aligned_cols=84  Identities=11%  Similarity=0.044  Sum_probs=50.3

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhh--cHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      .+++|+..++.++..     +|.++   .+...++.++...+  ++++|+..+.+++..    .|.   ......+.+|.
T Consensus        88 ~~~~al~~~~~~l~~-----~pk~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~---~~~~~~~~~~~  152 (334)
T d1dcea1          88 LVKAELGFLESCLRV-----NPKSY---GTWHHRCWLLSRLPEPNWARELELCARFLEA----DER---NFHCWDYRRFV  152 (334)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----CCCcH---HHHHHhhHHHHHhccccHHHHHHHHHHHHhh----Cch---hhhhhhhHHHH
Confidence            345566666665542     34444   33444555555543  578888888877665    222   22223456677


Q ss_pred             HHHhhcChHHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVEI  385 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~i  385 (420)
                      ++...+++++|+.++++++.+
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHhccccHHHHHHHHHHHHc
Confidence            777788888888887777554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.54  Score=44.08  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             HHHHHhhhhcCCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHH
Q 014710          275 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  343 (420)
Q Consensus       275 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  343 (420)
                      +...++.....|++++|+..|++++.+        +|....++++||.++...|++.+|+.++.++|.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            344455566788999999999999876        4555678899999999999999999999998754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.53  E-value=0.38  Score=36.84  Aligned_cols=49  Identities=10%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             ChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhc-----------HHHHHHHHHHhHHH
Q 014710          287 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-----------WKEALAYCQLTIPV  343 (420)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~l~~  343 (420)
                      .+++|+..+++++++     .|.+   ..++.+++.+|..+|+           |++|.+++++++.+
T Consensus        56 ~~~~Ai~~~~kAl~l-----~P~~---~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          56 MIQEAITKFEEALLI-----DPKK---DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----cchh---hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            456777888777764     3555   4456678888877653           56666666666554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.05  E-value=0.74  Score=34.21  Aligned_cols=85  Identities=11%  Similarity=-0.018  Sum_probs=54.3

Q ss_pred             ccCHHHHHHHHHHH----------HHHHHHHhhhhcC---CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH
Q 014710          259 VRSKEEIKKIASEV----------NILSKKTLALTSC---GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM  325 (420)
Q Consensus       259 ~~~~~~~~~~~~~~----------~~l~~~a~~~~~~---g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~  325 (420)
                      +++.+++..+.++.          ++-+.-|..+...   .+..+++.+++.+++.     +|.  ..-+.+..|+..|.
T Consensus        12 pl~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~--~~rd~lY~Lav~yy   84 (124)
T d2pqrb1          12 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AES--RRRECLYYLTIGCY   84 (124)
T ss_dssp             CCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGG--GHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----Cch--hHHHHHHHHHHHHH
Confidence            35566666655432          3334444444322   2345677777766542     122  23578889999999


Q ss_pred             HhhcHHHHHHHHHHhHHHHHHhcCCCChHH
Q 014710          326 ELEDWKEALAYCQLTIPVYQRVYPQFHPLL  355 (420)
Q Consensus       326 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  355 (420)
                      ++|+|++|+.++.++|.+-     |.|+..
T Consensus        85 klgdy~~A~~~~~~~L~ie-----P~n~qA  109 (124)
T d2pqrb1          85 KLGEYSMAKRYVDTLFEHE-----RNNKQV  109 (124)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-----TTCHHH
T ss_pred             HHhhHHHHHHHHHHHHccC-----CCcHHH
Confidence            9999999999999998873     555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.69  E-value=1.1  Score=39.02  Aligned_cols=85  Identities=14%  Similarity=0.047  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH-------HHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          288 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK-------ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~-------~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      .++|++.+++++..     .|.++.....+..+..       .+...|.+++|+.++++++..        +|.-...++
T Consensus        45 ~~~al~~~~~~l~~-----~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~pk~~~~~~  111 (334)
T d1dcea1          45 DESVLELTSQILGA-----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWH  111 (334)
T ss_dssp             SHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred             cHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CCCcHHHHH
Confidence            37899999988764     5777665444444433       344456777888877777654        566666778


Q ss_pred             HhhHHHHhhc--ChHHHHHHHHHHHHH
Q 014710          361 TCGKLEWFLG--DTENAIKSMTEAVEI  385 (420)
Q Consensus       361 ~La~~~~~~g--~~~eA~~~l~~A~~i  385 (420)
                      .+|.++...+  ++++|+..+.+|+.+
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            8888777665  478999999998886

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.32  E-value=3.3  Score=34.16  Aligned_cols=59  Identities=12%  Similarity=0.022  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI  388 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~~  388 (420)
                      .+.|.+.+++++.+.+.-+++.||.+.....+.+..+.+ +|+.++|..+.++|++-...
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            346888999999999989999999999999999988876 69999999998888865543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=90.96  E-value=2.8  Score=34.70  Aligned_cols=57  Identities=11%  Similarity=0.033  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  386 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~  386 (420)
                      .+.|.+.+++++.+...-+++.||.+.....+.+..+.+ .++.++|..+.++|++-.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            456888899999999888999999999999999999886 589999888877766533

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=90.69  E-value=3.7  Score=33.60  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhHHHHHHh--cCCCChHHHHHHHHhhHHHHh-hcChHHHHHHHHHHHHHHH
Q 014710          330 WKEALAYCQLTIPVYQRV--YPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILR  387 (420)
Q Consensus       330 ~~~A~~~~~~~l~~~~~~--~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~A~~i~~  387 (420)
                      .+.|.+.+++++++.+..  +++.||.+.....+.+..+.+ +++.++|..+.++|.+...
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~  183 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAE  183 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            356888899999988874  569999999999999998886 7999999999999998543

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.048  Score=32.93  Aligned_cols=30  Identities=20%  Similarity=0.517  Sum_probs=25.8

Q ss_pred             ccCccccCCCCCcCCCCCCcccccChhhchh
Q 014710           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKL   58 (420)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~   58 (420)
                      ..|..|........||+|.. .|||-.|-+.
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~-~yCSL~CyK~   37 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNA-PYCSLRCYRT   37 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCC-EESSHHHHHH
T ss_pred             ccChhhhCccccccCCCCCC-ceechHHHhh
Confidence            46888888878899999988 5999999974

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.77  E-value=1  Score=38.89  Aligned_cols=83  Identities=8%  Similarity=-0.036  Sum_probs=47.8

Q ss_pred             CChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHH-HHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhH
Q 014710          286 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  364 (420)
Q Consensus       286 g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~-~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  364 (420)
                      |+++.|++++++++.     .+|.+....   ...+.. +...|+.+.|..++++++...        |.....+...++
T Consensus       148 ~~~~~ar~i~~~al~-----~~~~~~~~~---~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~  211 (308)
T d2onda1         148 EGIKSGRMIFKKARE-----DARTRHHVY---VTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYID  211 (308)
T ss_dssp             HCHHHHHHHHHHHHT-----STTCCTHHH---HHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH-----hCCCcHHHH---HHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHH
Confidence            456667777766643     234433322   222322 233467777777777766532        333445566667


Q ss_pred             HHHhhcChHHHHHHHHHHHH
Q 014710          365 LEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       365 ~~~~~g~~~eA~~~l~~A~~  384 (420)
                      .....|++++|+.+|++|+.
T Consensus       212 ~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         212 YLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHH
Confidence            77777777777777777765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.40  E-value=4  Score=34.74  Aligned_cols=62  Identities=10%  Similarity=-0.022  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHhhcChHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  384 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~  384 (420)
                      ++...+......|+++.|...+.+++..    .|.+ +  ...+..++......|++++|+..+++|+.
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~----~~~~-~--~~~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAI----EDID-P--TLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSC-T--HHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHH----hcCC-h--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3444555666667777776666665531    1222 1  12334445555556666666666666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=84.62  E-value=2.2  Score=31.50  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             CCChHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHH
Q 014710          285 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  360 (420)
Q Consensus       285 ~g~~~~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  360 (420)
                      ..+.+++++.++++.+.       .|+   .+...|+.+|..    ..++++|+++++++.+.       .+|   ...+
T Consensus        36 ~~~~~~a~~~~~~aa~~-------g~~---~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~   95 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL-------NSG---NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCL   95 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHH
T ss_pred             ccCHHHHHHHHhhhhcc-------cch---hhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHHH
Confidence            34677788777776432       232   345667777765    35789999999887543       233   4678


Q ss_pred             HhhHHHHh----hcChHHHHHHHHHHHH
Q 014710          361 TCGKLEWF----LGDTENAIKSMTEAVE  384 (420)
Q Consensus       361 ~La~~~~~----~g~~~eA~~~l~~A~~  384 (420)
                      .||.+|..    ..+.++|..+|++|.+
T Consensus        96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          96 ILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            89998876    3588999999999875

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.87  E-value=3.4  Score=28.70  Aligned_cols=54  Identities=9%  Similarity=-0.050  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhHHHHhhcChHHHHHHHHHHHHHHHHhcCCCC-chHHH-HHHHHHHH
Q 014710          354 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKE-LILKLEEA  407 (420)
Q Consensus       354 ~~~~~l~~La~~~~~~g~~~eA~~~l~~A~~i~~~~~G~~h-~~~~~-~~~~l~~~  407 (420)
                      ..|..+.+-|.-+-..|+|++|+.+|.+|++.+......+- +..++ +..++.+.
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            34556666677778899999999999999999888765433 33333 33444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=81.82  E-value=1.8  Score=35.92  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHhcCCCChHHHHHHHHhhHHHHh----hcChHHHHHHHHHHHH
Q 014710          316 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  384 (420)
Q Consensus       316 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~A~~  384 (420)
                      ++..|+..+...||+.+|+++++++.+.     |  +   +...+.||.++..    ..++.+|..+++++..
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL-----K--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            5667888888999999999999988543     2  2   3467888988876    4577777777776544

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.06  E-value=5.8  Score=32.55  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHhHHHHH
Q 014710          290 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQ  345 (420)
Q Consensus       290 ~a~~~~~~~~~~~~~~l~~~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~  345 (420)
                      .|...|+.+..+..+-+.|.||..+.+..+.+..+.. .++.++|.++++++++-.-
T Consensus       144 ~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai  200 (230)
T d2o02a1         144 QSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5677788888887778999999999998888877665 5999999999999887543