Citrus Sinensis ID: 014741
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| 224113753 | 465 | predicted protein [Populus trichocarpa] | 1.0 | 0.901 | 0.830 | 0.0 | |
| 224117960 | 467 | predicted protein [Populus trichocarpa] | 1.0 | 0.897 | 0.830 | 0.0 | |
| 297741763 | 717 | unnamed protein product [Vitis vinifera] | 1.0 | 0.584 | 0.806 | 0.0 | |
| 359494826 | 617 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.679 | 0.806 | 0.0 | |
| 356520091 | 583 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.718 | 0.809 | 0.0 | |
| 356564474 | 579 | PREDICTED: DUF246 domain-containing prot | 1.0 | 0.723 | 0.799 | 0.0 | |
| 449513539 | 672 | PREDICTED: DUF246 domain-containing prot | 0.997 | 0.622 | 0.791 | 0.0 | |
| 449455459 | 672 | PREDICTED: DUF246 domain-containing prot | 0.997 | 0.622 | 0.789 | 0.0 | |
| 255554775 | 642 | conserved hypothetical protein [Ricinus | 1.0 | 0.652 | 0.817 | 0.0 | |
| 357480375 | 620 | hypothetical protein MTR_4g132590 [Medic | 0.990 | 0.669 | 0.797 | 0.0 |
| >gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/419 (83%), Positives = 383/419 (91%)
Query: 1 MNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVK 60
MNQQRVA+CNAVV+ARLLN+TLV+P+FMYSSVWRDVSQFSDIYQEEHFINYLTPDIR+VK
Sbjct: 47 MNQQRVAVCNAVVIARLLNSTLVIPRFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRIVK 106
Query: 61 ELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPI 120
ELP +LQSLDLEAIGSVVTD DI KESKPSFYLKNI+PILL+N VVH +GFGNRLAFDPI
Sbjct: 107 ELPKELQSLDLEAIGSVVTDADIGKESKPSFYLKNILPILLKNRVVHFVGFGNRLAFDPI 166
Query: 121 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKR 180
PFQLQ LRCRCNFHALQF+PKIQET ALL++RLRK+ HSGPLDHYL+GPYA+ ++EK
Sbjct: 167 PFQLQTLRCRCNFHALQFSPKIQETVALLIQRLRKNAAHSGPLDHYLIGPYAEKNLQEKV 226
Query: 181 GQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPS 240
G + KASRYLA+HLRFEIDMVAHSLCE+GGGEEER+ELE YREIHFPAL LKKT KLPS
Sbjct: 227 GHAVKASRYLALHLRFEIDMVAHSLCEYGGGEEERKELEAYREIHFPALTLLKKTNKLPS 286
Query: 241 PAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKE 300
PA +R EGLCPLTPEEAVLMLAALGF+RKTH+F+AGA IYGG RL AL SLYP LVTKE
Sbjct: 287 PAMLREEGLCPLTPEEAVLMLAALGFSRKTHIFIAGANIYGGRSRLTALTSLYPNLVTKE 346
Query: 301 NLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTI 360
LLSATEL+PF NFSSQLAALDFI CTA++AFAMTDSGSQLSSLVSG+RIYYGGGKMPTI
Sbjct: 347 KLLSATELKPFMNFSSQLAALDFIACTASDAFAMTDSGSQLSSLVSGFRIYYGGGKMPTI 406
Query: 361 RPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 419
RPNKRRLA IF KN++IEWK+FEQRVRKAVRQTKH+ R K RSVYRYPRCKECMC T+
Sbjct: 407 RPNKRRLADIFRKNNSIEWKIFEQRVRKAVRQTKHVLQRPKARSVYRYPRCKECMCLTE 465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 1.0 | 0.642 | 0.726 | 3e-165 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.570 | 0.405 | 0.698 | 1.2e-149 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.983 | 0.674 | 0.560 | 7e-125 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.568 | 0.419 | 0.353 | 3.7e-68 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.460 | 0.350 | 0.406 | 1.1e-66 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.570 | 0.425 | 0.348 | 2.7e-65 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.384 | 0.289 | 0.386 | 1.3e-62 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.534 | 0.408 | 0.357 | 3.6e-62 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.959 | 0.797 | 0.345 | 7.9e-62 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.534 | 0.394 | 0.341 | 9.9e-62 |
| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 305/420 (72%), Positives = 347/420 (82%)
Query: 1 MNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVK 60
+NQQRVA+CN VV+AR+LNATLV+PKFM+S VW D SQF DIYQ EHFI YL+PDIR+VK
Sbjct: 233 INQQRVAVCNIVVVARMLNATLVIPKFMFSDVWTDASQFGDIYQVEHFIKYLSPDIRIVK 292
Query: 61 ELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPI 120
+LP +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAFDPI
Sbjct: 293 KLPKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAFDPI 352
Query: 121 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIMKEK 179
PF+LQRLRCRCNFHAL F PKIQETGA+L+RRLR H P+D YLVGP +A I+ +K
Sbjct: 353 PFELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFILDKK 412
Query: 180 RGQSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTTKLP 239
G KAS+YLA+HLRFEIDMVAHSLC HFP LA+L KT K+P
Sbjct: 413 AGPLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQKMP 472
Query: 240 SPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTK 299
SP ++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP LVTK
Sbjct: 473 SPDDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNLVTK 532
Query: 300 ENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 359
EN+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GKMPT
Sbjct: 533 ENVLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGKMPT 592
Query: 360 IRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 419
IRPNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+ R GRSVYRYPRCKECMC D
Sbjct: 593 IRPNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMCNED 652
|
|
| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.XI.1485.1 | hypothetical protein (462 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-133 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-107 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 6e-05 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 383 bits (985), Expect = e-133
Identities = 146/355 (41%), Positives = 194/355 (54%), Gaps = 76/355 (21%)
Query: 2 NQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKE 61
NQQR IC+AV +ARLLNATLV+P+ +SVW D S+F DIY +HFI L D+R+VK+
Sbjct: 11 NQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKK 70
Query: 62 LPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIP 121
LP +L S E +T +P S PS+YL+ ++P+L ++GV+ L F +RLA D +P
Sbjct: 71 LPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDLLP 125
Query: 122 FQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRG 181
++QRLRCR NFHAL+F P+I+E G L+ RLR+ G
Sbjct: 126 PEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG----------------------- 162
Query: 182 QSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSP 241
+LA+HLRFE DM+A S C
Sbjct: 163 ------PFLALHLRFEKDMLAFSGC----------------------------------- 181
Query: 242 AEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKEN 301
G CPLTPEE L+L ALGF R T +++A +IYGG RRL L S++P L TKE
Sbjct: 182 ------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYTKET 235
Query: 302 LLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 356
L +A EL PF SS+LAALD+I C ++ F T G + V+G+R Y G K
Sbjct: 236 LATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRYLGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 83.14 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=441.41 Aligned_cols=304 Identities=39% Similarity=0.598 Sum_probs=207.7
Q ss_pred CcchhhHHHHHHHHHHHhcceEeeccccCCCcccCCCC-----CCCcCchHHHHHhccCCeEEeccCchhhhccchhhh-
Q 014741 1 MNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAI- 74 (419)
Q Consensus 1 LNQqR~~IcDaVaVARlLNATLViP~l~~~s~w~D~S~-----F~DIfD~dhFI~~L~~dVrIVk~LP~~~~~~~~~~~- 74 (419)
+|+||.++++||++|++||+|||||.|.....|++.++ |+|+||+++|+++++++|.+.+.+|..+........
T Consensus 10 fnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~ 89 (351)
T PF10250_consen 10 FNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYC 89 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhc
Confidence 49999999999999999999999999999999999998 999999999999999999999999877755322100
Q ss_pred -----------------------cccccccCCCC-CCChhHHHhhhhhhhhhc------ceEEEeccCCcccCCCCchhh
Q 014741 75 -----------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPIPFQL 124 (419)
Q Consensus 75 -----------------------~~~~~~~~~~~-~s~~~~Y~~~vlP~l~k~------~Vi~l~~~~~rLa~~~~p~~i 124 (419)
........... ++.+.+|+++++|.+.++ +|+.|.++..++..+..+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (351)
T PF10250_consen 90 WSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDL 169 (351)
T ss_dssp SS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGG
T ss_pred ccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccc
Confidence 00011122233 788999999999999987 999999999999988889999
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhhhhc
Q 014741 125 QRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHS 204 (419)
Q Consensus 125 QrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~~~~~~~~~~~~~~ylAlHLRfE~DMlA~s 204 (419)
|| +|+|.++|+++|+++|++++.. +++|||+|||+|+|| ++
T Consensus 170 ~r--------~l~~~~~i~~~a~~~i~~~~~~-----------------------------~~~yiavHlR~~~D~--~~ 210 (351)
T PF10250_consen 170 QR--------YLRFSPEIRELADKFIKRLLAG-----------------------------GGPYIAVHLRRGKDW--FS 210 (351)
T ss_dssp GG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH--HH
T ss_pred eE--------EEecCHHHHHHHHHHHHHhhcc-----------------------------cCceEEEeecccCch--Hh
Confidence 88 9999999999999999999832 258999999999999 89
Q ss_pred cccCCCChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeceecCccc
Q 014741 205 LCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTR 284 (419)
Q Consensus 205 gC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGG~~ 284 (419)
+|.+++ ++..|+.+|... .+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+
T Consensus 211 ~C~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~ 277 (351)
T PF10250_consen 211 ACEFKG---ERHLLASPRCWG----------KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGER 277 (351)
T ss_dssp HHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS------
T ss_pred hcccCC---chHHHHHhHhhc----------cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccch
Confidence 999955 778888888541 1234577889999999999999999999999999999999999999999
Q ss_pred ccchhHhhCCCccccccCCCccccccccccccccchhheeeeccCceeeecCCCCchhhhhhhhhccccCCCCcc
Q 014741 285 RLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 359 (419)
Q Consensus 285 ~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~SDvFv~t~~G~n~a~~v~GhR~y~G~~~~kT 359 (419)
.|.+|+++||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+..|+++|.|.|..++||
T Consensus 278 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 278 RLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp -----HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred hHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 99999999999999999999999999986 899999999999999999999 6689999999999999887555
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 4e-07
Identities = 47/315 (14%), Positives = 86/315 (27%), Gaps = 97/315 (30%)
Query: 10 NAVVLARLLNATL------VVPKFM-------YSSVW-------RDVSQFSDIYQEEH-- 47
+AV L TL +V KF+ Y + R S + +Y E+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 48 -------FINYLTPDIRMVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKP 89
F Y ++ +L L L G + V DV
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------- 170
Query: 90 SFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQ 143
+ + + L N + + + LQ+L + N+ +
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 144 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIH 193
+ LRRL K + + L LV ++ + ++ A +R+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 194 LRFEIDMVAH-SLCEFGGGEEERQELE---KYREIHFPALAHLKKTTKLPSPAEIRSEGL 249
H SL + KY + + LP +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---------RPQDLPREVLTTN--- 326
Query: 250 CPLTPEEAVLMLAAL 264
P + ++A
Sbjct: 327 -PR----RLSIIAES 336
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.39 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 98.38 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 92.64 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 81.51 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=131.14 Aligned_cols=283 Identities=22% Similarity=0.196 Sum_probs=156.3
Q ss_pred cchhhHHHHHHHHHHHhcce----EeeccccCCCcccCC------CCCCCcCchHHHHHhccCCeEEeccCchhhhcc-c
Q 014741 2 NQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLTPDIRMVKELPNKLQSL-D 70 (419)
Q Consensus 2 NQqR~~IcDaVaVARlLNAT----LViP~l~~~s~w~D~------S~F~DIfD~dhFI~~L~~dVrIVk~LP~~~~~~-~ 70 (419)
|-||...=.|.++|+.||.| ||||-+..-.-|+-+ -.|++.||++.+ +..|+|+.. +++... .
T Consensus 36 n~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~vpVI~m--eeFl~~~~ 109 (408)
T 4ap5_A 36 NLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKNIPVIEY--EQFIAESG 109 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTTSCEEEH--HHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----HhhCCeeEH--HHHHHHhC
Confidence 67899999999999999999 999977544456543 259999999864 445566532 222100 0
Q ss_pred hhhh-------------ccc----------c------cccCCCCCCChhHHHh-----------------hhhhhhhhc-
Q 014741 71 LEAI-------------GSV----------V------TDVDIPKESKPSFYLK-----------------NIIPILLRN- 103 (419)
Q Consensus 71 ~~~~-------------~~~----------~------~~~~~~~~s~~~~Y~~-----------------~vlP~l~k~- 103 (419)
+..+ ... + ...+.....++.|-.. .+-|.+.+.
T Consensus 110 ~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~~~~~~~~~~~~~~~ 189 (408)
T 4ap5_A 110 GPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNT 189 (408)
T ss_dssp SSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEECSBGGGGHHHHHHCT
T ss_pred CCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEeecchhhhhhhhhcC
Confidence 0000 000 0 0000000011222111 122333332
Q ss_pred --ceEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchh------
Q 014741 104 --GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSI------ 175 (419)
Q Consensus 104 --~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~~~I~~lg~~LV~RLr~~~~~~~~~~~~~~gpf~~~~------ 175 (419)
.-+-+..+...|+.-.-..+...+| ..|+|++.|.+.|+..++..-.. ++...+
T Consensus 190 ~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~-------------~~~~~h~r~~~d 251 (408)
T 4ap5_A 190 SARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNS-------------TDDADRIPFQED 251 (408)
T ss_dssp TCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCC-------------CTTTTTCCCCSS
T ss_pred ChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCc-------------ccceeecccchh
Confidence 2223333333443222223333322 47999999999999998876432 111111
Q ss_pred -hh-hhhcccccCCceEEEeechhhhhhhhccccCCCChhHHHHHHHHHHhhchhhhhcccCCCCCChHhhhcCCCCCCC
Q 014741 176 -MK-EKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLT 253 (419)
Q Consensus 176 -~~-~~~~~~~~~~~ylAlHLRfE~DMlA~sgC~~g~~~~E~~eL~~~R~~~~~~~~~~~~~~~~~~~~~~R~~G~CPLt 253 (419)
.. ........+++|+|+|+|-+.=+.+...|... ......
T Consensus 252 w~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~---------------------------------- 293 (408)
T 4ap5_A 252 WMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR---------------------------------- 293 (408)
T ss_dssp GGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH----------------------------------
T ss_pred HhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH----------------------------------
Confidence 00 01112234678999999976322333333211 111111
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeeceecCcccccchhHhhCCCccccccCCCccccccccccccccchhheeeeccCceee
Q 014741 254 PEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFA 333 (419)
Q Consensus 254 PeEvgl~L~alGf~~~T~IYlA~geiyGG~~~L~pL~~~FPnl~tKe~L~s~~EL~pf~~~ss~laALDy~Vc~~SDvFv 333 (419)
.+.-+++.. +-+.||||+-+. +..+.-|++.+|.++.-.. ..+++..+. ...+|.||-+||.+||+||
T Consensus 294 --~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~Fi 361 (408)
T 4ap5_A 294 --KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFI 361 (408)
T ss_dssp --HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEE
T ss_pred --HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeE
Confidence 111122222 334699998742 3446789999998764332 233444443 3457899999999999999
Q ss_pred ecCCCCchhhhhhhhhccccCCCCcc
Q 014741 334 MTDSGSQLSSLVSGYRIYYGGGKMPT 359 (419)
Q Consensus 334 ~t~~G~n~a~~v~GhR~y~G~~~~kT 359 (419)
+|.. |+|+..|.=.|-+.|+....|
T Consensus 362 Gt~~-StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 362 GTSV-STFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp BCTT-CHHHHHHHHHHHHHTBCGGGT
T ss_pred eCCc-CchhHHHHHHHHhcCCCCCcc
Confidence 9985 479999999999999875434
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00